RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13477
(295 letters)
>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein. Royal jelly is the
food of queen bee larvae, and is responsible for the
high reproductive ability of the queen. Major royal
jelly proteins make up around 90% of larval jelly
proteins. This family also the sequence-related yellow
protein of drosophila which controls pigmentation of the
adult cuticle and larval mouth parts.
Length = 285
Score = 134 bits (340), Expect = 9e-38
Identities = 50/144 (34%), Positives = 70/144 (48%), Gaps = 28/144 (19%)
Query: 150 TTTYRIKADSCDRLWVLDSGTVGIGNTTKQICPYAIHVFDLKTDRRIRKYQFRPEDILPG 209
+ YRI D CDRLWVLDSG V KQICP + VFDL TD+ +++++ P D+
Sbjct: 1 VSVYRIAVDECDRLWVLDSGIVNTLQPPKQICPPKLLVFDLATDKLLKRFEL-PADVA-- 57
Query: 210 TFIANIAVDTDRRIRKYQFRPEDILPGTFIANIAVDVGK-NCEDTFLYASDELAYGLLSY 268
+ + N+ VDVG C+DTF+Y +D GL+ Y
Sbjct: 58 ------------------------KGNSRLVNLVVDVGDDTCDDTFVYIADAKGRGLIVY 93
Query: 269 SWEENTSWRASHGFFFPDPLLVPY 292
++ SWR H F+PDP +
Sbjct: 94 DLADDKSWRVEHNTFYPDPDFGKF 117
>gnl|CDD|226444 COG3934, COG3934, Endo-beta-mannanase [Carbohydrate transport and
metabolism].
Length = 587
Score = 30.6 bits (69), Expect = 0.95
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 9/79 (11%)
Query: 62 DFEYPSEEIRQYAKFTKDFVPENNLPVGIEVW--RNKLFVTVP-------RWEDGVPSTL 112
+ Y + K+ +D V L I W RN+ V P W + + +
Sbjct: 111 NVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYI 170
Query: 113 NYIPLDAATSSSPNLIPYP 131
++ S P+P
Sbjct: 171 KWLDDGHLVSVGDPASPWP 189
>gnl|CDD|236673 PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha;
Reviewed.
Length = 1021
Score = 30.8 bits (70), Expect = 1.0
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 178 KQICPYAIHVFDLKTDRRI--RKYQFRPEDILPGTFIANIAVDTDRRIRKYQFRPEDILP 235
+ I P IH DL K F D T A + + + Q + D+ P
Sbjct: 597 QVIAPVKIHALDLTRGELKVENKLWFTNLDDY--TLHAEVRAE-GETLASGQIKLRDVAP 653
Query: 236 GT 237
+
Sbjct: 654 NS 655
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 29.5 bits (67), Expect = 1.9
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 238 FIANIAVDVGKNCEDTFLYASDELAYGLLSYSWEENTSWRASHGF 282
+A A + K ED L S E + + S S
Sbjct: 128 ALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGS---SIMP 169
>gnl|CDD|203892 pfam08266, Cadherin_2, Cadherin-like. This cadherin domain is
usually the most N-terminal copy of the domain.
Length = 84
Score = 27.5 bits (62), Expect = 2.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 230 PEDILPGTFIANIAVDVG 247
PE+ PG+F+ N+A D+G
Sbjct: 8 PEETEPGSFVGNLAKDLG 25
>gnl|CDD|185216 PRK15316, PRK15316, RatA-like protein; Provisional.
Length = 2683
Score = 29.6 bits (66), Expect = 2.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 99 VTVPRWEDGVPSTLNYIPLDAATSSSPNLIPYP 131
+ PRWE+ P ++ + DAAT + L P P
Sbjct: 100 IATPRWENQTPPAVSLVWADAATPDTL-LDPQP 131
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 28.9 bits (64), Expect = 3.5
Identities = 19/70 (27%), Positives = 27/70 (38%)
Query: 206 ILPGTFIANIAVDTDRRIRKYQFRPEDILPGTFIANIAVDVGKNCEDTFLYASDELAYGL 265
+P F NI D D RI L + V+ G + F ++ GL
Sbjct: 200 FVPYKFPENIPGDVDFRIMLTFLEFYSTLLHFVSLKLYVEEGLDYPPKFDWSKPNFLDGL 259
Query: 266 LSYSWEENTS 275
SY EE++S
Sbjct: 260 SSYELEESSS 269
>gnl|CDD|222859 PHA02535, P, terminase ATPase subunit; Provisional.
Length = 581
Score = 28.5 bits (64), Expect = 4.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 57 QWRALDFEYPSEEIRQYAK 75
QWR LDF + EIR+ +
Sbjct: 439 QWRGLDFAEQAAEIRKLTE 457
>gnl|CDD|193168 pfam12692, Methyltransf_17, S-adenosyl-L-methionine
methyltransferase. This domain is found in bacterial
proteins. The structure of the proteins in this family
suggest that they function as a methyltransferase.
Length = 160
Score = 27.7 bits (62), Expect = 5.0
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 14/38 (36%)
Query: 10 MSRLEAFIVRLT--------------NLSGVVVDFGSG 33
MSRL++FI RLT L G V++ G G
Sbjct: 1 MSRLDSFIRRLTAQRDCLNHAAAQTAGLEGPVLELGLG 38
>gnl|CDD|182649 PRK10689, PRK10689, transcription-repair coupling factor;
Provisional.
Length = 1147
Score = 28.6 bits (64), Expect = 5.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 57 QWRALDFEYPSEEIRQYAKFTKDFVPENNLPVGIEVWRNKLFVTVPRWEDGVPSTLNYIP 116
QWR FE +++ A+ V + LP GIE W+ LF + P +P +Y P
Sbjct: 230 QWRD-TFE-----VKRDAEHIYQQVSKGTLPAGIEYWQ-PLFFSEP-----LPPLFSYFP 277
>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 273
Score = 27.3 bits (61), Expect = 8.6
Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 19/115 (16%)
Query: 36 WFESKSTVSLGHSLEKLQQVFQWRALDFEYPSEEIRQYAKFTKDFVPENNLPVGIEVWRN 95
W + GHSLE + + R DFE + +QYA +P +P E
Sbjct: 132 WKIQRDMAERGHSLEDVLASIEARKPDFEAYIDPQKQYADVVIQVLPTQLIPDDTE---G 188
Query: 96 KLFVTVPRWEDGVP-----------STLNYIPLDAA-TSSSPNLI----PYPSWE 134
K+ ++GV ST+++IP T S P + P +
Sbjct: 189 KVLRVRLIQKEGVKDFVPVYLFDEGSTISWIPCGRKLTCSYPGIKLAYGPDTYYG 243
>gnl|CDD|182557 PRK10569, PRK10569, NAD(P)H-dependent FMN reductase; Provisional.
Length = 191
Score = 26.9 bits (60), Expect = 9.4
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 37 FESKSTVSLGHSLEKLQQ----VFQWRALDFEYPSEEIRQYAKF 76
F S+S+ L ++ E L V+ W +F E++ YA+F
Sbjct: 12 FPSRSSALLEYAREWLNGLGVEVYHWNLQNF--APEDL-LYARF 52
>gnl|CDD|216347 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain.
Copper amine oxidases are a ubiquitous and novel group
of quinoenzymes that catalyze the oxidative deamination
of primary amines to the corresponding aldehydes, with
concomitant reduction of molecular oxygen to hydrogen
peroxide. The enzymes are dimers of identical 70-90 kDa
subunits, each of which contains a single copper ion and
a covalently bound cofactor formed by the
post-translational modification of a tyrosine side chain
to 2,4,5-trihydroxyphenylalanine quinone (TPQ). This
family corresponds to the catalytic domain of the
enzyme.
Length = 411
Score = 27.5 bits (62), Expect = 9.7
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 5/30 (16%)
Query: 165 VLDSGTVGIGNTTKQI-----CPYAIHVFD 189
DSG G+G + CP I D
Sbjct: 75 AFDSGEYGLGTMANSLVLGCDCPGVITYLD 104
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.429
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,544,433
Number of extensions: 1483520
Number of successful extensions: 1229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1226
Number of HSP's successfully gapped: 15
Length of query: 295
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 199
Effective length of database: 6,679,618
Effective search space: 1329243982
Effective search space used: 1329243982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)