RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13477
(295 letters)
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein,
serotonin, salivary gland, binding, ligand binging
protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis}
PDB: 3q6p_A* 3q6t_A*
Length = 381
Score = 174 bits (442), Expect = 3e-52
Identities = 52/245 (21%), Positives = 85/245 (34%), Gaps = 54/245 (22%)
Query: 54 QVFQWRALDFEYPSEEIRQYAKFTKDFVPENNLPVGIEV--WRNKLFVTVPRWEDGVPST 111
Q ++W+ L + + + P+N + KLF+ VPR VP T
Sbjct: 4 QGYKWKQLLYNNVTPG---------SYNPDNMISTAFAYDAEGEKLFLAVPRKLPRVPYT 54
Query: 112 LNYIPLD----AATSSSPNLIPYPSWEANQVPPQPQDQCDTLTTTYRIKADSCDRLWVLD 167
L + SP L + + LT+ Y+ D C RLWV+D
Sbjct: 55 LAEVDTKNSLGVKGKHSPLLNKFSGHKT----------GKELTSIYQPVIDDCRRLWVVD 104
Query: 168 SGTVGIGNTTKQICPYA---IHVFDLKTDR--RIRKYQFRPEDILPGTFIANIAVDTDRR 222
G+V + + P I +DLK + +Y F + T+ AVD
Sbjct: 105 IGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDV--- 161
Query: 223 IRKYQFRPEDILPGTFIANIAVDVGKNCEDTFLYASDELAYGLLSYSWEENTSWRASHGF 282
+ +C +TF+Y ++ L L Y ++ SW +H
Sbjct: 162 ---------------------ANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT 200
Query: 283 FFPDP 287
F +
Sbjct: 201 FKAER 205
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 109 bits (272), Expect = 9e-28
Identities = 31/205 (15%), Positives = 65/205 (31%), Gaps = 52/205 (25%)
Query: 84 NNLPVGIEVWRN-KLFVTVPRWEDGVPSTLNYIPLDAATSSSPNLIPYPSWEANQVPPQP 142
+ P I + + +LF+++ ++ + + + LIP+P N
Sbjct: 16 SLAPGNITLTPDGRLFLSLHQF-YQPEMQVAEL-------TQDGLIPFPPQSGNA----- 62
Query: 143 QDQCDTLTTTYRIKADSCDRLWVLDSGTVGIGNTTKQICPYAIHVFDLKTDRRIRKYQFR 202
T T IK+D +W+LD+G + +D ++ R
Sbjct: 63 ---IITFDTVLGIKSDGNGIVWMLDNGNQ-------SKSVPKLVAWDTLNNQLSRVIYLP 112
Query: 203 PEDILPGTFIANIAVDTDRRIRKYQFRPEDILPGTFIANIAVDVGKNCEDTFLYASDELA 262
P L +F+ ++AVD +I++ + +
Sbjct: 113 PPITLSNSFVNDLAVDLIHNF-------------VYISD---------------PAPDDK 144
Query: 263 YGLLSYSWEENTSWRASHGFFFPDP 287
L+ + + R G+ P
Sbjct: 145 AALIRVDLQTGLAARVLQGYPGIAP 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.003
Identities = 44/312 (14%), Positives = 86/312 (27%), Gaps = 84/312 (26%)
Query: 6 SRSQ-MSRLEAFIVRLTNLSGVVVD--FGSGGWWFESKST----VSLGHSLEKLQ--QVF 56
SR Q +L ++ L V++D GSG K+ V L + ++ ++F
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSG------KTWVALDVCLSYKVQCKMDFKIF 185
Query: 57 QWRALDFEY---PSEEIRQ----YAKFTKDFVPEN----NLPVGIEVWRNKL--FVTVPR 103
W L+ + P + + ++ + N+ + I + +L +
Sbjct: 186 -W--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 104 WEDGVPSTLNYIPLDAATSSSPNLIPYPSWEANQVPPQPQD-QCDTLTTTYRIKADSCDR 162
+E+ + L N+ A + C L TT R K
Sbjct: 243 YENC------LLVLL-------NV-----QNAKAW--NAFNLSCKILLTT-RFKQ----- 276
Query: 163 LWVLDSGTVGIGNTTKQIC----------PYAIHVFDLKTDRRIRKYQFRPE--DILP-- 208
V D + TT I + D R E P
Sbjct: 277 --VTDFLS---AATTTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRR 329
Query: 209 -GTFIANIAVDTDR--RIRKYQFRPEDILPGTFIANIAVDVGKNC-EDTFLYASD-ELAY 263
+I + + + + + + + ++ +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 264 GLLSYSWEENTS 275
LLS W +
Sbjct: 390 ILLSLIWFDVIK 401
Score = 32.9 bits (74), Expect = 0.12
Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 34 GWWFESKSTVSLGHSLEKLQQ-----VFQWRALDFEYPSEEIRQYAKFTKDFVPENNLPV 88
+++ +GH L+ ++ +F+ LDF + ++IR + N
Sbjct: 471 QYFYSH-----IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 89 GIEVWRNKLFVTVPRWEDGVPSTLNYIPLDAATSSSPNLIPYP 131
++ ++ + P++E V + L+++P NLI
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLP-----KIEENLICSK 563
Score = 29.1 bits (64), Expect = 2.6
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 19/103 (18%)
Query: 186 HVFDLKTDRRIRKYQFRPEDILPGTFIANIAVDTDRR---------IRKYQFR-----PE 231
H D +T +YQ++ DIL F + D + + K + +
Sbjct: 5 HHMDFETGEH--QYQYK--DILS-VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 232 DILPGTFIANIAVDVGKNCEDTFLYASDELAYGLLSYSWEENT 274
+ + + + F+ + Y L +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.013
Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 40/145 (27%)
Query: 168 SGTVGIGNTTKQICPYAIHVFDLKTDRRIR-KYQFRPEDIL---PGTFIANIAVDTDRRI 223
S G+G + A V++ + D + Y F DI+ P + + +RI
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWN-RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 224 RK-YQFRPEDILPGTFIANIAVDVGKNCEDTFLYASDELAYGLLSYSWE---------EN 273
R+ Y I VD E F E+ SY++ +
Sbjct: 1685 RENYS---------AMIFETIVDGKLKTEKIF----KEINEHSTSYTFRSEKGLLSATQF 1731
Query: 274 T----------SWRA--SHGFFFPD 286
T ++ S G D
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPAD 1756
Score = 35.0 bits (80), Expect = 0.028
Identities = 46/299 (15%), Positives = 75/299 (25%), Gaps = 143/299 (47%)
Query: 1 MSSMSSRSQMSR--LEAFIVRLTNLSG----------------VVVDFGSGGWWFESKST 42
S M S S +++ ++ ++ TN +VV SG +S
Sbjct: 335 PSPMLSISNLTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKNLVV---SG----PPQSL 386
Query: 43 VSLGHSLEKLQ---QVFQWRALDFEYPSEEIRQYAKFTKDFVPENNLPVGIEVWRNKLFV 99
L +L K + + Q R P E R+ KF+ F+P V
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRI-----PFSE-RK-LKFSNRFLP----------------V 423
Query: 100 TVP----------------RWEDGV---PSTLNYIPL-DAAT-----SSSPNLIPYPSWE 134
P ++ V + IP+ D S ++
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ-IPVYDTFDGSDLRVLSGSISE----- 477
Query: 135 ANQVPPQPQDQCDTLTTTYRI---KADSCDRLWVLD---SGTVGIGNTTKQICPYAIHVF 188
D + + +LD G G+G T +
Sbjct: 478 ---------RIVDCIIRL-PVKWETTTQFKATHILDFGPGGASGLGVLTHRN-------- 519
Query: 189 DLKTDRRIRKYQFRPEDILPGTFIANIAVDTDRRIRKYQFRPEDILPGTFIANIAVDVG 247
GT + R+ I+ GT N D G
Sbjct: 520 ------------------KDGTGV---------RV---------IVAGTLDINPDDDYG 542
Score = 28.5 bits (63), Expect = 3.2
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 26/103 (25%)
Query: 192 TDRRIR-KYQFRPEDILPGT--F------IANIAVDTDRRIRKYQFRPEDILPGTFIANI 242
++R+++ +F LP F A+ ++ D F +DI I
Sbjct: 410 SERKLKFSNRF-----LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI-------QI 457
Query: 243 AV-DV--GKNCEDTFLYASDELAYGLLSYS--WEENTSWRASH 280
V D G + S+ + ++ WE T ++A+H
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 32.7 bits (75), Expect = 0.16
Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 32/111 (28%)
Query: 153 YRIKADSCDRLWVLDSGTVGIGNTTKQICPYAIHVFDLKTDRRIRKYQFRPEDILPGTFI 212
Y I D LW+ GT+ A+ F+ + + + + I
Sbjct: 455 YAILPDGEGNLWL---GTLS-----------ALVRFNPEQRSFTTIEKEKDGTPVVSKQI 500
Query: 213 ANIAVDTDRRI------------------RKYQFRPEDILPGTFIANIAVD 245
+ D+ +R+ +K P + F I
Sbjct: 501 TTLFRDSHKRLWIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEA 551
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR
genomics, joint center for structural genomics, JCSG;
HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Length = 174
Score = 30.7 bits (69), Expect = 0.37
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 14/46 (30%)
Query: 2 SSMSSRSQMSRLEAFIVRLT--------------NLSGVVVDFGSG 33
+ S+ + SRL+ FI R+ LSG V + G G
Sbjct: 5 MQIMSQPEQSRLDLFIDRMVSQRACLEHAIAQTAGLSGPVYELGLG 50
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 29.1 bits (66), Expect = 0.62
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 230 PEDILPGTFIANIAVDVG 247
PE+ GTF+ IA D+G
Sbjct: 10 PEEAKHGTFVGRIAQDLG 27
Score = 26.8 bits (60), Expect = 3.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 203 PEDILPGTFIANIAVD 218
PE+ GTF+ IA D
Sbjct: 10 PEEAKHGTFVGRIAQD 25
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 230 PEDILPGTFIANIAVDVG 247
E+ G+ + N+A D+G
Sbjct: 18 LEETDRGSLVGNLAKDLG 35
Score = 26.4 bits (59), Expect = 5.4
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 203 PEDILPGTFIANIAVD 218
E+ G+ + N+A D
Sbjct: 18 LEETDRGSLVGNLAKD 33
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 30.0 bits (68), Expect = 1.1
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 10/38 (26%)
Query: 170 TVGIGNTTKQICPYAIHVFDLKTDRRIRKYQFRPEDIL 207
VGI A+ + D++ RI Y+F+ E +L
Sbjct: 452 LVGIS---------AVMIQDMQGK-RINNYEFKWERML 479
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 1.6
Identities = 35/204 (17%), Positives = 54/204 (26%), Gaps = 70/204 (34%)
Query: 47 HSLEKLQQVFQWRALDFEYPSEEI-RQYAKFTKDFVPENNLPVGIEVWRNKLFVTVPRWE 105
E +Q+V L+ S+E Q+ D V +P E V +
Sbjct: 918 EKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYS-----VKL---- 968
Query: 106 DGVPSTLNYIPLDAATSSSPNLIPYPSWEANQVP----PQPQDQCDTLTTTYRIKAD--- 158
L AT P + + A Q+P TY I D
Sbjct: 969 -----------LKGATLYIPKALRFDRLVAGQIPTGWNA----------KTYGISDDIIS 1007
Query: 159 SCDR--LW--------VLDSG----------------TVGIGNTTKQICPYAIHVFDLKT 192
D L+ + SG G+ + D
Sbjct: 1008 QVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFK 1067
Query: 193 DRRIRKYQFRPEDILPGTFIANIA 216
D ++ DIL +FI ++
Sbjct: 1068 DEPVQN------DILQESFINTMS 1085
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A
{Plasmodium falciparum} SCOP: c.37.1.10
Length = 442
Score = 28.6 bits (65), Expect = 2.7
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 37 FESKSTVSLGHSLEKLQQVFQWRALDFEYPSEEIRQYAKFTKDFV 81
F++ ++ L ++ D E Y +D +
Sbjct: 169 FKNM----YSKLIDHLMDLYNITEYDKEKELNLFYNYHIKLRDRI 209
>4axd_A Inositol-pentakisphosphate 2-kinase; transferase, inositol kinase,
phytic acid, protein kinase, I signalling; HET: ANP CIT;
2.05A {Arabidopsis thaliana} PDB: 4axc_A 4aqk_A* 4axf_A*
4axe_A* 2xam_A* 2xal_A* 2xan_A* 2xao_A* 2xar_A* 3udz_A*
3udt_A* 3uds_A*
Length = 456
Score = 27.0 bits (58), Expect = 9.4
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 141 QPQDQCDTLTTTYRIKADSCD-----RLWVLDSGTVGIGNTTKQICP------YAIHVFD 189
P D+ + Y I A + D ++ + P Y +H D
Sbjct: 353 LPLDESLKIVKEYLIAATAKDCSIMISFQSRNAWDSEPSGDYVSLKPTNQTFDYKVHFID 412
Query: 190 L--KTDRRIRKYQFRPEDIL 207
L K +R+ Y + I+
Sbjct: 413 LSLKPLKRMESYYKLDKKII 432
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5,
PSI, protein structure initiative, midwest center for
structural genomics; 2.00A {Escherichia coli} SCOP:
d.115.1.1
Length = 188
Score = 26.3 bits (59), Expect = 9.9
Identities = 13/71 (18%), Positives = 18/71 (25%), Gaps = 24/71 (33%)
Query: 131 PSWEAN---QVPPQPQDQCDTLTTTYRIKADSCDRLWVLDSGTVGIGN-TTKQICPYAIH 186
S AN P T ++A V+ T G N +
Sbjct: 138 TS--ANLSGLPPC---------RTVDEVRAQFGAAFPVVPGETGGRLNPSE--------- 177
Query: 187 VFDLKTDRRIR 197
+ D T R
Sbjct: 178 IRDALTGELFR 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.429
Gapped
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,817,314
Number of extensions: 289630
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 688
Number of HSP's successfully gapped: 27
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)