RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13477
         (295 letters)



>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide
           transhydrogenase dI component {Rhodospirillum rubrum
           [TaxId: 1085]}
          Length = 183

 Score = 29.6 bits (66), Expect = 0.34
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 235 PGTFIANIAVDVGKNCEDT 253
           PG+ I ++AV+ G NC  +
Sbjct: 143 PGSVIIDLAVEAGGNCPLS 161


>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium
           lapideum [TaxId: 32060]}
          Length = 168

 Score = 29.1 bits (65), Expect = 0.37
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 235 PGTFIANIAVDVGKNCEDT 253
            G+ I ++AVD G   E  
Sbjct: 124 TGSVIVDVAVDQGGCVETL 142


>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli
          [TaxId: 562]}
          Length = 81

 Score = 25.5 bits (56), Expect = 2.9
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 49 LEKLQQVFQWRALDFEYPSE------EIRQYAKFTKDFVPENNLPVGIEVWRNKLF 98
           + ++ +    +   +  +E      +I Q   +     P+NNLP  I  WR +L 
Sbjct: 13 FKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0441    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,206,122
Number of extensions: 58259
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 9
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)