Query psy1348
Match_columns 87
No_of_seqs 179 out of 1364
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 20:26:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 99.9 4.9E-25 1.7E-29 137.5 8.5 83 2-86 204-286 (303)
2 1okc_A ADP, ATP carrier protei 99.9 8.5E-24 2.9E-28 131.4 10.0 84 3-86 115-201 (297)
3 2lck_A Mitochondrial uncouplin 99.9 8.8E-24 3E-28 131.8 9.3 85 2-86 106-192 (303)
4 1okc_A ADP, ATP carrier protei 99.9 2.8E-23 9.7E-28 129.1 9.5 84 2-85 9-97 (297)
5 2acm_A Mucin-1; auto-catalytic 65.5 0.89 3E-05 21.6 -0.5 20 39-58 40-59 (66)
6 3tgu_G UQCRQ, mitochondrial ub 57.0 9.9 0.00034 19.1 2.4 27 58-84 38-64 (81)
7 3f2e_A SIRV coat protein; four 46.5 9.9 0.00034 19.1 1.4 34 36-69 6-43 (100)
8 1pp9_G Ubiquinol-cytochrome C 45.8 18 0.00061 18.1 2.3 32 53-84 33-64 (81)
9 3cx5_H Cytochrome B-C1 complex 42.8 28 0.00095 18.0 2.8 33 52-84 42-74 (93)
10 2bnk_A Early protein GP16.7; D 42.3 20 0.00069 16.9 2.0 45 16-61 20-65 (67)
11 2a3d_A Protein (de novo three- 40.9 29 0.001 16.2 2.9 14 19-32 9-22 (73)
12 4f9k_A CAMP-dependent protein 39.7 23 0.00078 18.4 2.1 31 48-78 43-73 (95)
13 3i71_A Ethanolamine utilizatio 36.5 21 0.00071 16.9 1.5 25 5-29 16-40 (68)
14 3vjj_A P9-1; 3.00A {Rice black 30.2 26 0.00088 22.1 1.6 47 12-68 273-319 (368)
15 3d7c_A General control of amin 29.2 45 0.0015 17.3 2.3 27 16-47 43-71 (112)
16 2d9e_A Peregrin; four-helix bu 26.9 48 0.0016 17.5 2.2 28 16-48 43-72 (121)
17 2ouo_A HUNK1 protein, bromodom 26.0 51 0.0017 17.7 2.2 28 16-48 63-92 (130)
18 1e6i_A Transcriptional activat 24.4 61 0.0021 17.1 2.4 27 16-47 49-77 (121)
19 3hme_A Bromodomain-containing 24.3 57 0.0019 17.2 2.2 28 16-48 49-78 (123)
20 2da7_A Zinc finger homeobox pr 23.4 75 0.0026 15.5 2.3 19 13-31 38-56 (71)
21 3mb4_A Protein polybromo-1; PB 23.2 61 0.0021 17.1 2.2 29 15-48 56-86 (124)
22 2yyn_A Transcription intermedi 23.1 73 0.0025 17.1 2.5 30 16-48 55-86 (135)
23 3rcw_A Bromodomain-containing 21.1 77 0.0026 17.0 2.4 28 16-48 49-78 (135)
24 2z5i_I TM, tropomyosin alpha-1 20.3 38 0.0013 14.6 0.8 12 20-31 4-15 (40)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.92 E-value=4.9e-25 Score=137.49 Aligned_cols=83 Identities=25% Similarity=0.312 Sum_probs=77.7
Q ss_pred hhhhhHHHHHHHHhhhhccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhhCccccccchHHHHHHHHHHHHHHHHHHHH
Q psy1348 2 ACGLAGGLSGLISWALIMPFDVVKSTLQSDSLTDPKYKGMFDCFRKNYRQYGWTFFFRGISITTIRAFPVNYIMFVTYEE 81 (87)
Q Consensus 2 ~~~~~g~~a~~~~~~~~~P~d~ik~~~q~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~ye~ 81 (87)
..+++|++||++++++++|+|+||+|+|.+. ...|.++++++++++++||++|||||+.|+++|.+|.++++|.+||.
T Consensus 204 ~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~--~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~ 281 (303)
T 2lck_A 204 CHFTSAFGAGFCTTVIASPVDVVKTRYMNSA--LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQ 281 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--SSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc--ccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHH
Confidence 3588999999999999999999999999984 45689999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q psy1348 82 FKCHC 86 (87)
Q Consensus 82 ~~~~~ 86 (87)
+|+.+
T Consensus 282 ~k~~l 286 (303)
T 2lck_A 282 LKRAL 286 (303)
T ss_dssp HHSCC
T ss_pred HHHHH
Confidence 99764
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.91 E-value=8.5e-24 Score=131.44 Aligned_cols=84 Identities=19% Similarity=0.381 Sum_probs=77.3
Q ss_pred hhhhHHHHHHHHhhhhccHHHHHHHHHhCCC---CCCCCCCHHHHHHHHHHhhCccccccchHHHHHHHHHHHHHHHHHH
Q psy1348 3 CGLAGGLSGLISWALIMPFDVVKSTLQSDSL---TDPKYKGMFDCFRKNYRQYGWTFFFRGISITTIRAFPVNYIMFVTY 79 (87)
Q Consensus 3 ~~~~g~~a~~~~~~~~~P~d~ik~~~q~~~~---~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y 79 (87)
.+++|++||+++.++++|+|+||+|+|++.. ....|.++.+++++++++||++|||||+.++++|.+|+++++|.+|
T Consensus 115 ~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~y 194 (297)
T 1okc_A 115 NLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVY 194 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999743 1346899999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q psy1348 80 EEFKCHC 86 (87)
Q Consensus 80 e~~~~~~ 86 (87)
|.+|+.+
T Consensus 195 e~~k~~~ 201 (297)
T 1okc_A 195 DTAKGML 201 (297)
T ss_dssp HHHHHSS
T ss_pred HHHHHHh
Confidence 9999854
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.90 E-value=8.8e-24 Score=131.81 Aligned_cols=85 Identities=27% Similarity=0.365 Sum_probs=78.4
Q ss_pred hhhhhHHHHHHHHhhhhccHHHHHHHHHhCCC--CCCCCCCHHHHHHHHHHhhCccccccchHHHHHHHHHHHHHHHHHH
Q psy1348 2 ACGLAGGLSGLISWALIMPFDVVKSTLQSDSL--TDPKYKGMFDCFRKNYRQYGWTFFFRGISITTIRAFPVNYIMFVTY 79 (87)
Q Consensus 2 ~~~~~g~~a~~~~~~~~~P~d~ik~~~q~~~~--~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y 79 (87)
..+++|++||+++.++++|+|++|+|+|.+.. ....|.++.+++++++++||++|||||+.++++|.+|+++++|.+|
T Consensus 106 ~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~y 185 (303)
T 2lck_A 106 SRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTY 185 (303)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999853 2347899999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q psy1348 80 EEFKCHC 86 (87)
Q Consensus 80 e~~~~~~ 86 (87)
|.+|+.+
T Consensus 186 e~~k~~l 192 (303)
T 2lck_A 186 DLIKDTL 192 (303)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9999865
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.90 E-value=2.8e-23 Score=129.09 Aligned_cols=84 Identities=31% Similarity=0.508 Sum_probs=77.1
Q ss_pred hhhhhHHHHHHHHhhhhccHHHHHHHHHhCCC-----CCCCCCCHHHHHHHHHHhhCccccccchHHHHHHHHHHHHHHH
Q psy1348 2 ACGLAGGLSGLISWALIMPFDVVKSTLQSDSL-----TDPKYKGMFDCFRKNYRQYGWTFFFRGISITTIRAFPVNYIMF 76 (87)
Q Consensus 2 ~~~~~g~~a~~~~~~~~~P~d~ik~~~q~~~~-----~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~ 76 (87)
..+++|++||+++.++++|+|++|+|+|.+.. ....|+++.+++++++++||++|||||+.+++++.+|.++++|
T Consensus 9 ~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f 88 (297)
T 1okc_A 9 KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNF 88 (297)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999742 1236889999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy1348 77 VTYEEFKCH 85 (87)
Q Consensus 77 ~~ye~~~~~ 85 (87)
.+||.+|+.
T Consensus 89 ~~ye~~k~~ 97 (297)
T 1okc_A 89 AFKDKYKQI 97 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999984
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=65.53 E-value=0.89 Score=21.64 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHhhCccccc
Q psy1348 39 KGMFDCFRKNYRQYGWTFFF 58 (87)
Q Consensus 39 ~~~~~~~~~i~~~~G~~~ly 58 (87)
+++.+.+.+|++++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 35778889999999998876
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=56.99 E-value=9.9 Score=19.11 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=19.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHh
Q psy1348 58 FRGISITTIRAFPVNYIMFVTYEEFKC 84 (87)
Q Consensus 58 y~G~~~~~~~~~~~~~~~~~~ye~~~~ 84 (87)
+|-....++..+|..++.+.+|++.++
T Consensus 38 ~RR~~~q~l~v~pPfi~~Y~i~~Wa~~ 64 (81)
T 3tgu_G 38 WRRFSSQVFKVAPPFLGAYLLYSWGTQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHHHHH
Confidence 333456677788888888888888764
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=46.49 E-value=9.9 Score=19.08 Aligned_cols=34 Identities=24% Similarity=0.518 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHhhCc----cccccchHHHHHHHH
Q psy1348 36 PKYKGMFDCFRKNYRQYGW----TFFFRGISITTIRAF 69 (87)
Q Consensus 36 ~~~~~~~~~~~~i~~~~G~----~~ly~G~~~~~~~~~ 69 (87)
+++.+.-.-...++.+.|+ ++.|.|+...+.|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 4556666666677777775 457888887776653
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=45.80 E-value=18 Score=18.12 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=23.6
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHHHh
Q psy1348 53 GWTFFFRGISITTIRAFPVNYIMFVTYEEFKC 84 (87)
Q Consensus 53 G~~~ly~G~~~~~~~~~~~~~~~~~~ye~~~~ 84 (87)
|+...+|-+...++..+|...+.+.+|++.++
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~ 64 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHH
Confidence 44445555677777888988899999888765
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=42.79 E-value=28 Score=17.96 Aligned_cols=33 Identities=9% Similarity=-0.076 Sum_probs=26.0
Q ss_pred hCccccccchHHHHHHHHHHHHHHHHHHHHHHh
Q psy1348 52 YGWTFFFRGISITTIRAFPVNYIMFVTYEEFKC 84 (87)
Q Consensus 52 ~G~~~ly~G~~~~~~~~~~~~~~~~~~ye~~~~ 84 (87)
+|+...+|-+...++..+|...+.+.+|++.++
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~ 74 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNE 74 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHH
Confidence 466667777777788888999999999888765
No 10
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=42.32 E-value=20 Score=16.86 Aligned_cols=45 Identities=13% Similarity=0.341 Sum_probs=25.8
Q ss_pred hhhccHHHHHHHHHhCCC-CCCCCCCHHHHHHHHHHhhCccccccch
Q psy1348 16 ALIMPFDVVKSTLQSDSL-TDPKYKGMFDCFRKNYRQYGWTFFFRGI 61 (87)
Q Consensus 16 ~~~~P~d~ik~~~q~~~~-~~~~~~~~~~~~~~i~~~~G~~~ly~G~ 61 (87)
-+--|+|.|---. .+.. ......+-...-+.-|+-|.-+.+|||.
T Consensus 20 nIrIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 20 NIRIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp TCCCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred CCcCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 3556888887554 2211 1111122334455677778888899985
No 11
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=40.89 E-value=29 Score=16.19 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=10.9
Q ss_pred ccHHHHHHHHHhCC
Q psy1348 19 MPFDVVKSTLQSDS 32 (87)
Q Consensus 19 ~P~d~ik~~~q~~~ 32 (87)
+-+..||+|+|+-+
T Consensus 9 qrlaaiktrlqalg 22 (73)
T 2a3d_A 9 QRLAAIKTRLQALG 22 (73)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhc
Confidence 45678999999874
No 12
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A
Probab=39.65 E-value=23 Score=18.38 Aligned_cols=31 Identities=10% Similarity=0.086 Sum_probs=26.7
Q ss_pred HHHhhCccccccchHHHHHHHHHHHHHHHHH
Q psy1348 48 NYRQYGWTFFFRGISITTIRAFPVNYIMFVT 78 (87)
Q Consensus 48 i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~ 78 (87)
=+++.|+..+.+++...+++.=|...+.|..
T Consensus 43 YlqkhgI~eLLqe~tv~Ll~~RPeDPv~FLa 73 (95)
T 4f9k_A 43 YVQLHGIQQVLKDCIVHLCISKPERPMKFLR 73 (95)
T ss_dssp HHHHTCTTTTTHHHHHHHHHHCCSCHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3456999999999999999999988888765
No 13
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=36.54 E-value=21 Score=16.87 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=20.0
Q ss_pred hhHHHHHHHHhhhhccHHHHHHHHH
Q psy1348 5 LAGGLSGLISWALIMPFDVVKSTLQ 29 (87)
Q Consensus 5 ~~g~~a~~~~~~~~~P~d~ik~~~q 29 (87)
--|+.+|-+++-...|+|..|..+.
T Consensus 16 ~QGMTaGEVAA~f~w~Le~ar~aLe 40 (68)
T 3i71_A 16 RQGMTAGEVAAHFGWPLEKARNALE 40 (68)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred hccccHHHHHHHhCCcHHHHHHHHH
Confidence 3467788888888899999988774
No 14
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=30.17 E-value=26 Score=22.10 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=28.0
Q ss_pred HHHhhhhccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhhCccccccchHHHHHHH
Q psy1348 12 LISWALIMPFDVVKSTLQSDSLTDPKYKGMFDCFRKNYRQYGWTFFFRGISITTIRA 68 (87)
Q Consensus 12 ~~~~~~~~P~d~ik~~~q~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~ 68 (87)
.++++--+|+|.+|..++..- +....+.+.++.+|+ |+-...+-+|.
T Consensus 273 qLaTFdnypfdllRfqL~Sli-------stp~~I~e~i~K~GL---Fk~it~~~~rg 319 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLI-------STPALIREKIAKEGL---FKIITSNTLRG 319 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCC-------CCCHHHHHHHHHSCS---EEECC------
T ss_pred eeecCCCCCHHHHHHHhhhhc-------cChHHHHHHHHhcCc---eEEEecccccC
Confidence 345667789999988777652 344677888888874 44444444443
No 15
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=29.24 E-value=45 Score=17.27 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=16.7
Q ss_pred hhhccHH--HHHHHHHhCCCCCCCCCCHHHHHHH
Q psy1348 16 ALIMPFD--VVKSTLQSDSLTDPKYKGMFDCFRK 47 (87)
Q Consensus 16 ~~~~P~d--~ik~~~q~~~~~~~~~~~~~~~~~~ 47 (87)
.+.+|+| +|+.|+... .|.+..+...+
T Consensus 43 iIk~PmdL~tI~~kl~~~-----~Y~s~~~f~~D 71 (112)
T 3d7c_A 43 VIRFPIDLKTMTERLRSR-----YYVTRKLFVAD 71 (112)
T ss_dssp HCSSCCCHHHHHHHHHTT-----CCCSHHHHHHH
T ss_pred HccCCcCHHHHHHHHcCC-----CCcCHHHHHHH
Confidence 4567776 467777654 67776555444
No 16
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.87 E-value=48 Score=17.51 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=17.3
Q ss_pred hhhccHH--HHHHHHHhCCCCCCCCCCHHHHHHHH
Q psy1348 16 ALIMPFD--VVKSTLQSDSLTDPKYKGMFDCFRKN 48 (87)
Q Consensus 16 ~~~~P~d--~ik~~~q~~~~~~~~~~~~~~~~~~i 48 (87)
.+.+|+| +|+.|+... .|.+..+...++
T Consensus 43 iIk~PmdL~tI~~kl~~~-----~Y~s~~ef~~D~ 72 (121)
T 2d9e_A 43 HIKKPMDFFTMKQNLEAY-----RYLNFDDFEEDF 72 (121)
T ss_dssp HCSSCCCHHHHHHHHHTT-----CCCSHHHHHHHH
T ss_pred HcCCCcCHHHHHHHHhcC-----CCCCHHHHHHHH
Confidence 4567777 467777654 677766555443
No 17
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=26.04 E-value=51 Score=17.66 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=16.7
Q ss_pred hhhccHH--HHHHHHHhCCCCCCCCCCHHHHHHHH
Q psy1348 16 ALIMPFD--VVKSTLQSDSLTDPKYKGMFDCFRKN 48 (87)
Q Consensus 16 ~~~~P~d--~ik~~~q~~~~~~~~~~~~~~~~~~i 48 (87)
++.+|+| +|+.|+... .|.+..+...++
T Consensus 63 iIk~PmDL~tI~~kl~~~-----~Y~s~~ef~~Dv 92 (130)
T 2ouo_A 63 IIKHPMDMSTIKSKLEAR-----EYRDAQEFGADV 92 (130)
T ss_dssp HCSSCCCHHHHHHHHHTT-----CCSSHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHcC-----CCCCHHHHHHHH
Confidence 4556666 467777654 677766555443
No 18
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=24.44 E-value=61 Score=17.05 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=16.6
Q ss_pred hhhccHH--HHHHHHHhCCCCCCCCCCHHHHHHH
Q psy1348 16 ALIMPFD--VVKSTLQSDSLTDPKYKGMFDCFRK 47 (87)
Q Consensus 16 ~~~~P~d--~ik~~~q~~~~~~~~~~~~~~~~~~ 47 (87)
.+.+|+| +|+.|+... .|.+..+...+
T Consensus 49 iIk~PmdL~tI~~kl~~~-----~Y~s~~~f~~D 77 (121)
T 1e6i_A 49 FIKEPMDLSTMEIKLESN-----KYQKMEDFIYD 77 (121)
T ss_dssp HCSSCCCHHHHHHHHHTT-----CCSSHHHHHHH
T ss_pred HcCCCCCHHHHHHHHhcC-----CCCCHHHHHHH
Confidence 4567776 467777654 66676555444
No 19
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=24.29 E-value=57 Score=17.24 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=17.4
Q ss_pred hhhccHH--HHHHHHHhCCCCCCCCCCHHHHHHHH
Q psy1348 16 ALIMPFD--VVKSTLQSDSLTDPKYKGMFDCFRKN 48 (87)
Q Consensus 16 ~~~~P~d--~ik~~~q~~~~~~~~~~~~~~~~~~i 48 (87)
.+.+|+| +|+.+++.. .|.+..+...++
T Consensus 49 iIk~PmdL~tI~~kl~~~-----~Y~~~~~f~~D~ 78 (123)
T 3hme_A 49 IIKHPMDFGTMKDKIVAN-----EYKSVTEFKADF 78 (123)
T ss_dssp HCSSCCCHHHHHHHHHTT-----CCCSHHHHHHHH
T ss_pred HCCCCCCHHHHHHHhccC-----CCCCHHHHHHHH
Confidence 4567777 467777654 566766555553
No 20
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.43 E-value=75 Score=15.49 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=15.7
Q ss_pred HHhhhhccHHHHHHHHHhC
Q psy1348 13 ISWALIMPFDVVKSTLQSD 31 (87)
Q Consensus 13 ~~~~~~~P~d~ik~~~q~~ 31 (87)
++..+..|.|+||...|..
T Consensus 38 LA~~lgL~~~VVrVWFqNr 56 (71)
T 2da7_A 38 ISIAVGLPQEFVKEWFEQR 56 (71)
T ss_dssp HHHHHTCCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHhhc
Confidence 5667788999999999875
No 21
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=23.19 E-value=61 Score=17.08 Aligned_cols=29 Identities=17% Similarity=0.372 Sum_probs=18.2
Q ss_pred hhhhccHH--HHHHHHHhCCCCCCCCCCHHHHHHHH
Q psy1348 15 WALIMPFD--VVKSTLQSDSLTDPKYKGMFDCFRKN 48 (87)
Q Consensus 15 ~~~~~P~d--~ik~~~q~~~~~~~~~~~~~~~~~~i 48 (87)
.++.+|+| +|+.++... .|.+..+...++
T Consensus 56 ~iI~~PmdL~tI~~kl~~~-----~Y~~~~~f~~D~ 86 (124)
T 3mb4_A 56 LTIKKPMDMEKIRSHMMAN-----KYQDIDSMVEDF 86 (124)
T ss_dssp HHCSSCCCHHHHHHHHHTT-----CCCSHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHcC-----CCCCHHHHHHHH
Confidence 34667777 477777654 677766655554
No 22
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=23.14 E-value=73 Score=17.15 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=18.4
Q ss_pred hhhccHH--HHHHHHHhCCCCCCCCCCHHHHHHHH
Q psy1348 16 ALIMPFD--VVKSTLQSDSLTDPKYKGMFDCFRKN 48 (87)
Q Consensus 16 ~~~~P~d--~ik~~~q~~~~~~~~~~~~~~~~~~i 48 (87)
+|.+|+| +|+.|++.. ...|.+..+...++
T Consensus 55 iIk~PmDL~tI~~kL~~~---~~~Y~s~~ef~~Dv 86 (135)
T 2yyn_A 55 IIKNPMDLSTIKKRLQED---YSMYSKPEDFVADF 86 (135)
T ss_dssp HCSSCCCHHHHHHHHHSS---SCCCSSHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHhcc---ccCCCCHHHHHHHH
Confidence 4667777 477777753 13577766555543
No 23
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=21.12 E-value=77 Score=16.95 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=17.4
Q ss_pred hhhccHH--HHHHHHHhCCCCCCCCCCHHHHHHHH
Q psy1348 16 ALIMPFD--VVKSTLQSDSLTDPKYKGMFDCFRKN 48 (87)
Q Consensus 16 ~~~~P~d--~ik~~~q~~~~~~~~~~~~~~~~~~i 48 (87)
.+.+|+| +|+.|+... .|.+..+...++
T Consensus 49 iI~~PmdL~tI~~kl~~~-----~Y~~~~~f~~D~ 78 (135)
T 3rcw_A 49 HIKHPMDFATMRKRLEAQ-----GYKNLHEFEEDF 78 (135)
T ss_dssp HCSSCCCHHHHHHHHHTT-----CCSSHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHhcC-----CCCCHHHHHHHH
Confidence 4567776 467777654 567766555543
No 24
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=20.31 E-value=38 Score=14.56 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=8.6
Q ss_pred cHHHHHHHHHhC
Q psy1348 20 PFDVVKSTLQSD 31 (87)
Q Consensus 20 P~d~ik~~~q~~ 31 (87)
-+|.||-+||.-
T Consensus 4 ~MdAIKKKMq~l 15 (40)
T 2z5i_I 4 SMDAIKKKMQML 15 (40)
T ss_dssp -CHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 468889888864
Done!