RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1348
(87 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 78.5 bits (194), Expect = 3e-19
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 5 LAGGLSGLISWALIMPFDVVKSTLQSDSLTDPKYKGMFDCFRKNYRQYGWTFFFRGISIT 64
+ +G + + P DVVK+ + +L +Y C R+ G F++G +
Sbjct: 207 TSAFGAGFCTTVIASPVDVVKTRYMNSAL--GQYHSAGHCALTMLRKEGPRAFYKGFMPS 264
Query: 65 TIRAFPVNYIMFVTYEEFK 83
+R N +MFVTYE+ K
Sbjct: 265 FLRLGSWNVVMFVTYEQLK 283
Score = 73.9 bits (182), Expect = 1e-17
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 5 LAGGLSGLISWALIMPFDVVKSTLQSDSL--TDPKYKGMFDCFRKNYRQYGWTFFFRGIS 62
LAG +G ++ A+ P DVVK Q+ + +Y+ + ++ R+ G ++G S
Sbjct: 109 LAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTS 168
Query: 63 ITTIRAFPVNYIMFVTYEEFK 83
R VN VTY+ K
Sbjct: 169 PNVARNAIVNCAELVTYDLIK 189
Score = 53.8 bits (130), Expect = 2e-10
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 8/87 (9%)
Query: 5 LAGGLSGLISWALIMPFDVVKSTLQ--------SDSLTDPKYKGMFDCFRKNYRQYGWTF 56
L G + I+ + P D K LQ + +Y+G+ R G
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 57 FFRGISITTIRAFPVNYIMFVTYEEFK 83
+ G+ R + Y+ K
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVK 92
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 70.4 bits (173), Expect = 2e-16
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 5 LAGGLSGLISWALIMPFDVVKSTLQSDSL---TDPKYKGMFDCFRKNYRQYGWTFFFRGI 61
+ ++ + PFD V+ + S D Y G DC+RK + G FF+G
Sbjct: 214 MIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGA 273
Query: 62 SITTIRAFPVNYIMFVTYEEFK 83
+R + V Y+E K
Sbjct: 274 WSNVLRGMGGA-FVLVLYDEIK 294
Score = 67.7 bits (166), Expect = 2e-15
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 5 LAGGLSGLISWALIMPFDVVKSTLQ-----SDSLTDPKYKGMFDCFRKNYRQYGWTFFFR 59
LAGG++ IS + P + VK LQ + +YKG+ DC + ++ G+ F+R
Sbjct: 12 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 71
Query: 60 GISITTIRAFPVNYIMFVTYEEFK 83
G IR FP + F +++K
Sbjct: 72 GNLANVIRYFPTQALNFAFKDKYK 95
Score = 64.2 bits (157), Expect = 4e-14
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 5 LAGGLSGLISWALIMPFDVVKSTLQSD---SLTDPKYKGMFDCFRKNYRQYGWTFFFRGI 61
+GG +G S + P D ++ L +D ++ G+ +C K ++ G ++G
Sbjct: 117 ASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176
Query: 62 SITTIRAFPVNYIMFVTYEEFK 83
+++ F Y+ K
Sbjct: 177 NVSVQGIIIYRAAYFGVYDTAK 198
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A* 3teg_A* 3tup_A
Length = 415
Score = 25.6 bits (56), Expect = 2.1
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 22 DVVKSTLQSDSLTDPKYKGMFDCFRKNYRQYGWT 55
D+V+ D PK C+R YR T
Sbjct: 355 DLVEKVDLIDKFVHPKTHKTSHCYRITYRHMERT 388
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 25.3 bits (56), Expect = 2.4
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 33 LTDPKYKGMFDCFRKNYRQYGWTFFFRG 60
L D + + +D ++ G+ +
Sbjct: 80 LKDEQRRAEYDQLWQHRNDPGFGRQRQT 107
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu
genomics, protein structure initiative, center for
eukaryot structural genomics; 1.90A {Arabidopsis
thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Length = 326
Score = 24.4 bits (53), Expect = 5.5
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 41 MFDCFRKNYRQYGWTFFFRGISITTIRAFPVNYIMFVTYEEFK 83
+ F + G + R P ++FVTYEE K
Sbjct: 191 AVEAFCEGKFIGGPFWDHILEYWYASRENPNK-VLFVTYEELK 232
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 24.5 bits (53), Expect = 5.6
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 31 DSLTDPKYKGMFDCFRKNYRQYGWTFFFRGISITTIRAFPVNYIMFVTYEEFK 83
D +G + F+ R+Y T + + A + + + F
Sbjct: 44 DRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFP 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 5.6
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 22/73 (30%)
Query: 3 CGLAGGLSGLISWALIMPFDVVKSTLQSDSLTDPKYKGMFDCFRKNYRQY-GWTFFFRGI 61
G G GL++ I ++DS ++ F + R+ FF I
Sbjct: 268 KGATGHSQGLVTAVAI---------AETDS---------WESFFVSVRKAITVLFF---I 306
Query: 62 SITTIRAFPVNYI 74
+ A+P +
Sbjct: 307 GVRCYEAYPNTSL 319
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.4 bits (52), Expect = 5.9
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 15/42 (35%)
Query: 3 CGLAGGLSGLISWALIMPFDVVKSTLQSDSLTDPKYKGMFDC 44
G+ G SG K+ + D K + D
Sbjct: 156 DGVLG--SG-------------KTWVALDVCLSYKVQCKMDF 182
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae,
orthobunyavirus, aedes triseriatu hydrolase; 2.20A
{Bunyavirus la crosse} PDB: 2xi7_A*
Length = 184
Score = 23.8 bits (51), Expect = 8.2
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 15 WALIMPFDVVKSTLQSDSLTDPKYKGMFDCFRKNYRQYGWTFFFRGISITTIRAFPVNYI 74
I+ + V S +S +T KY ++ R + I IR PV+
Sbjct: 88 VLYIIDYKVSVSN-ESSVITYDKY---YELTRDISDRLSIPI-----EIVIIRIDPVSRD 138
Query: 75 MFVTYEEFK 83
+ + + FK
Sbjct: 139 LHINSDRFK 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.144 0.485
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,382,036
Number of extensions: 66020
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 13
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.4 bits)