RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1348
         (87 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 49.3 bits (116), Expect = 3e-09
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 5   LAGGLSGLISWALIMPFDVVKSTLQSDSL---TDPKYKGMFDCFRKNYRQYGWTFFFRGI 61
           +       ++  +  PFD V+  +   S     D  Y G  DC+RK  +  G   FF+G 
Sbjct: 213 MIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGA 272

Query: 62  SITTIRAFPVNYIMFVTYEE 81
               +R       + V Y+E
Sbjct: 273 WSNVLRGMG-GAFVLVLYDE 291



 Score = 44.7 bits (104), Expect = 1e-07
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 5  LAGGLSGLISWALIMPFDVVKSTLQSDSLT-----DPKYKGMFDCFRKNYRQYGWTFFFR 59
          LAGG++  IS   + P + VK  LQ    +     + +YKG+ DC  +  ++ G+  F+R
Sbjct: 11 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 70

Query: 60 GISITTIRAFPVNYIMFVTYEEFKCHCL 87
          G     IR FP   + F   +++K   L
Sbjct: 71 GNLANVIRYFPTQALNFAFKDKYKQIFL 98


>d1t06a_ a.118.1.17 (A:) Hypothetical protein BC3264 {Bacillus
          cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}
          Length = 235

 Score = 25.6 bits (56), Expect = 0.81
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 9/51 (17%)

Query: 19 MPFDVVKSTLQSDSLTDPKYKGMFDCFRKNYRQYGWTFFFRGISITTIRAF 69
          M F  V   L++  L   +        +K Y   G      G++   ++  
Sbjct: 1  MDFKTVMQELEA--LGKERT-------KKIYISNGAHEPVFGVATGAMKPI 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.144    0.485 

Gapped
Lambda     K      H
   0.267   0.0485    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,809
Number of extensions: 14030
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 7
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.5 bits)