BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13480
(615 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 596 bits (1537), Expect = e-170, Method: Compositional matrix adjust.
Identities = 304/597 (50%), Positives = 411/597 (68%), Gaps = 18/597 (3%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+GV G+P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG LSVELGPG+L SI+DGIQRPL+ I E + +I +GV PAL RD W F P
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
K+G + GGD G V E +++ HK+++PP +G + IA G+Y ++EV+ + + G
Sbjct: 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M EKLP PL+TGQRV+D+ FP GGT AIPGAFG GKTV
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGAFGSGKTV 242
Query: 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTSNM
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNM 300
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 360
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 361 ASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDAD 420
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA+R+HFP+INWL SYS Y+ A+ D++ KN PE+ +R K +LQ+E +L EIV++VG
Sbjct: 421 LARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 481 PDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINR 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRN 612
E +I +R+ ++ MKF+ V +K R+ D+ E ++ F+
Sbjct: 541 GVPLE-EIAKLPVRE-------EIGRMKFERDV----SKIRSLIDKTNEQFEELFKK 585
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 594 bits (1531), Expect = e-170, Method: Compositional matrix adjust.
Identities = 303/597 (50%), Positives = 410/597 (68%), Gaps = 18/597 (3%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+GV G+P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG LSVELGPG+L SI+DGIQRPL+ I E + +I +GV PAL RD W F P
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
K+G + GGD G V E +++ HK+++PP +G + IA G+Y ++EV+ + + G
Sbjct: 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M EKLP PL+TGQRV+D+ FP GGT AIPG FG GKTV
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKTV 242
Query: 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTSNM
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNM 300
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 360
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 361 ASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDAD 420
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA+R+HFP+INWL SYS Y+ A+ D++ KN PE+ +R K +LQ+E +L EIV++VG
Sbjct: 421 LARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 481 PDALPERERAILLVARMLREDYLQQDAWDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINR 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRN 612
E +I +R+ ++ MKF+ V +K R+ D+ E ++ F+
Sbjct: 541 GVPLE-EIAKLPVRE-------EIGRMKFERDV----SKIRSLIDKTNEQFEELFKK 585
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 594 bits (1531), Expect = e-170, Method: Compositional matrix adjust.
Identities = 303/597 (50%), Positives = 410/597 (68%), Gaps = 18/597 (3%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+GV G+P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG LSVELGPG+L SI+DGIQRPL+ I E + +I +GV PAL RD W F P
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
K+G + GGD G V E +++ HK+++PP +G + IA G+Y ++EV+ + + G
Sbjct: 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M EKLP PL+TGQRV+D+ FP GGT AIPG FG GKTV
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKTV 242
Query: 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTSNM
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNM 300
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 360
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 361 ASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDAD 420
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA+R+HFP+INWL SYS Y+ A+ D++ KN PE+ +R K +LQ+E +L EIV++VG
Sbjct: 421 LARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 481 PDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINR 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRN 612
E +I +R+ ++ MKF+ V +K R+ D+ E ++ F+
Sbjct: 541 GVPLE-EIAKLPVRE-------EIGRMKFERDV----SKIRSLIDKTNEQFEELFKK 585
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 592 bits (1527), Expect = e-169, Method: Compositional matrix adjust.
Identities = 302/597 (50%), Positives = 410/597 (68%), Gaps = 18/597 (3%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+GV G+P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG LSVELGPG+L SI+DGIQRPL+ I E + +I +GV PAL RD W F P
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
K+G + GGD G V E +++ HK+++PP +G + IA G+Y ++EV+ + + G
Sbjct: 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M EKLP PL+TGQRV+D+ FP GGT AIPG FG GKTV
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKTV 242
Query: 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTSNM
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNM 300
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 360
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 361 ASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDAD 420
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA+R+H+P+INWL SYS Y+ A+ D++ KN PE+ +R K +LQ+E +L EIV++VG
Sbjct: 421 LARRRHWPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 481 PDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINR 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRN 612
E +I +R+ ++ MKF+ V +K R+ D+ E ++ F+
Sbjct: 541 GVPLE-EIAKLPVRE-------EIGRMKFERDV----SKIRSLIDKTNEQFEELFKK 585
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 592 bits (1526), Expect = e-169, Method: Compositional matrix adjust.
Identities = 302/597 (50%), Positives = 409/597 (68%), Gaps = 18/597 (3%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+GV G+P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG LSVELGPG+L SI+DGIQRPL+ I E + +I +GV PAL RD W F P
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
K+G + GGD G V E +++ HK+++PP +G + IA G+Y ++EV+ + + G
Sbjct: 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M EKLP PL+TGQRV+D+ FP GGT AIP FG GKTV
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPAPFGSGKTV 242
Query: 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTSNM
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNM 300
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 360
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 361 ASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDAD 420
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA+R+HFP+INWL SYS Y+ A+ D++ KN PE+ +R K +LQ+E +L EIV++VG
Sbjct: 421 LARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 481 PDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINR 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRN 612
E +I +R+ ++ MKF+ V +K R+ D+ E ++ F+
Sbjct: 541 GVPLE-EIAKLPVRE-------EIGRMKFERDV----SKIRSLIDKTNEQFEELFKK 585
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 592 bits (1526), Expect = e-169, Method: Compositional matrix adjust.
Identities = 302/597 (50%), Positives = 409/597 (68%), Gaps = 18/597 (3%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+GV G+P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG LSVELGPG+L SI+DGIQRPL+ I E + +I +GV PAL RD W F P
Sbjct: 65 VVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
K+G + GGD G V E +++ HK+++PP +G + IA G+Y ++EV+ + + G
Sbjct: 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M EKLP PL+TGQRV+D+ FP GGT AIPG F GKTV
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFASGKTV 242
Query: 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTSNM
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNM 300
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 360
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 361 ASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDAD 420
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA+R+HFP+INWL SYS Y+ A+ D++ KN PE+ +R K +LQ+E +L EIV++VG
Sbjct: 421 LARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 481 PDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINR 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRN 612
E +I +R+ ++ MKF+ V +K R+ D+ E ++ F+
Sbjct: 541 GVPLE-EIAKLPVRE-------EIGRMKFERDV----SKIRSLIDKTNEQFEELFKK 585
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 591 bits (1524), Expect = e-169, Method: Compositional matrix adjust.
Identities = 302/597 (50%), Positives = 409/597 (68%), Gaps = 18/597 (3%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+GV G+P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG LSVELGP +L SI+DGIQRPL+ I E + +I +GV PAL RD W F P
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
K+G + GGD G V E +++ HK+++PP +G + IA G+Y ++EV+ + + G
Sbjct: 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M EKLP PL+TGQRV+D+ FP GGT AIPG FG GKTV
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGAGKTV 242
Query: 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTSNM
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNM 300
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 360
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 361 ASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDAD 420
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA+R+HFP+INWL SYS Y+ A+ D++ KN PE+ +R K +LQ+E +L EIV++VG
Sbjct: 421 LARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 481 PDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINR 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRN 612
E +I +R+ ++ MKF+ V +K R+ D+ E ++ F+
Sbjct: 541 GVPLE-EIAKLPVRE-------EIGRMKFERDV----SKIRSLIDKTNEQFEELFKK 585
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 591 bits (1523), Expect = e-169, Method: Compositional matrix adjust.
Identities = 302/597 (50%), Positives = 409/597 (68%), Gaps = 18/597 (3%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+GV G+P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG LSVELGP +L SI+DGIQRPL+ I E + +I +GV PAL RD W F P
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
K+G + GGD G V E +++ HK+++PP +G + IA G+Y ++EV+ + + G
Sbjct: 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M EKLP PL+TGQRV+D+ FP GGT AIPG FG GKTV
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKTV 242
Query: 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTSNM
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNM 300
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 360
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 361 ASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDAD 420
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA+R+HFP+INWL SYS Y+ A+ D++ KN PE+ +R K +LQ+E +L EIV++VG
Sbjct: 421 LARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 481 PDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINR 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRN 612
E +I +R+ ++ MKF+ V +K R+ D+ E ++ F+
Sbjct: 541 GVPLE-EIAKLPVRE-------EIGRMKFERDV----SKIRSLIDKTNEQFEELFKK 585
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 589 bits (1519), Expect = e-168, Method: Compositional matrix adjust.
Identities = 301/597 (50%), Positives = 408/597 (68%), Gaps = 18/597 (3%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+GV G+P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG LSVELGP +L SI+DGIQRPL+ I E + +I +GV PAL RD W F P
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
K+G + GGD G V E +++ HK+++PP +G + IA G+Y ++EV+ + + G
Sbjct: 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M EKLP PL+TGQRV+D+ FP GGT AIPG FG KTV
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSAKTV 242
Query: 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTSNM
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNM 300
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 360
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 361 ASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDAD 420
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA+R+HFP+INWL SYS Y+ A+ D++ KN PE+ +R K +LQ+E +L EIV++VG
Sbjct: 421 LARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 481 PDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINR 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRN 612
E +I +R+ ++ MKF+ V +K R+ D+ E ++ F+
Sbjct: 541 GVPLE-EIAKLPVRE-------EIGRMKFERDV----SKIRSLIDKTNEQFEELFKK 585
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 589 bits (1519), Expect = e-168, Method: Compositional matrix adjust.
Identities = 301/597 (50%), Positives = 408/597 (68%), Gaps = 18/597 (3%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+GV G+P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG LSVELGP +L SI+DGIQRPL+ I E + +I +GV PAL RD W F P
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
K+G + GGD G V E +++ HK+++PP +G + IA G+Y ++EV+ + + G
Sbjct: 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M EKLP PL+TGQRV+D+ FP GGT AIPG FG GK V
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKAV 242
Query: 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTSNM
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNM 300
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 360
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 361 ASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDAD 420
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA+R+HFP+INWL SYS Y+ A+ D++ KN PE+ +R K +LQ+E +L EIV++VG
Sbjct: 421 LARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 481 PDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINR 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRN 612
E +I +R+ ++ MKF+ V +K R+ D+ E ++ F+
Sbjct: 541 GVPLE-EIAKLPVRE-------EIGRMKFERDV----SKIRSLIDKTNEQFEELFKK 585
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 589 bits (1518), Expect = e-168, Method: Compositional matrix adjust.
Identities = 301/597 (50%), Positives = 408/597 (68%), Gaps = 18/597 (3%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+GV G+P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG LSVELGP +L SI+DGIQRPL+ I E + +I +GV PAL RD W F P
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
K+G + GGD G V E +++ HK+++PP +G + IA G+Y ++EV+ + + G
Sbjct: 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M EKLP PL+TGQRV+D+ FP GGT AIPG FG G TV
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGATV 242
Query: 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTSNM
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNM 300
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 360
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 361 ASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDAD 420
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA+R+HFP+INWL SYS Y+ A+ D++ KN PE+ +R K +LQ+E +L EIV++VG
Sbjct: 421 LARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 481 PDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINR 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRN 612
E +I +R+ ++ MKF+ V +K R+ D+ E ++ F+
Sbjct: 541 GVPLE-EIAKLPVRE-------EIGRMKFERDV----SKIRSLIDKTNEQFEELFKK 585
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 588 bits (1515), Expect = e-168, Method: Compositional matrix adjust.
Identities = 301/597 (50%), Positives = 408/597 (68%), Gaps = 18/597 (3%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+GV G+P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG LSVELGP +L SI+DGIQRPL+ I E + +I +GV PAL RD W F P
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
K+G + GGD G V E +++ HK+++PP +G + IA G+Y ++EV+ + + G
Sbjct: 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M EKLP PL+TGQRV+D+ FP GGT AIPG G GKTV
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGKTV 242
Query: 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTSNM
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNM 300
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 360
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 361 ASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDAD 420
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA+R+HFP+INWL SYS Y+ A+ D++ KN PE+ +R K +LQ+E +L EIV++VG
Sbjct: 421 LARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 481 PDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINR 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRN 612
E +I +R+ ++ MKF+ V +K R+ D+ E ++ F+
Sbjct: 541 GVPLE-EIAKLPVRE-------EIGRMKFERDV----SKIRSLIDKTNEQFEELFKK 585
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 562 bits (1448), Expect = e-160, Method: Compositional matrix adjust.
Identities = 299/597 (50%), Positives = 398/597 (66%), Gaps = 24/597 (4%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + ++GP V A+ M G+ MY++ +VG LVGEIIRL+GD A +QVYE+TSG+ VG+P
Sbjct: 4 GVIQKIAGPAVIAKGMLGARMYDICKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEP 63
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG PL+VELGPG+L I+DGIQRPL+ I E IYI +GV + AL+R+ W + PM
Sbjct: 64 VVSTGLPLAVELGPGMLNGIYDGIQRPLERIRE-KTGIYITRGVVVHALDREKKWAWTPM 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGE 197
+K G + GG G V E HK+++PP +G V + PAG Y V+E V+ E DG
Sbjct: 123 -VKPGDEVRGGMVLGTVPEFGFT-HKILVPPDVRGRVKEVKPAGEYTVEEPVVVLE-DGT 179
Query: 198 KSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVI 257
+ K M KL N P LTG R+LD LFP +GGT AIPG FG GKTV
Sbjct: 180 ELK--MYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKTVT 237
Query: 258 SQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMP 317
Q+L+K+SN+DV+VYVGCGERGNEM +VL +FPELT G +M RT L+ANTSNMP
Sbjct: 238 QQSLAKWSNADVVVYVGCGERGNEMTDVLVEFPELTDPKTG--GPLMHRTVLIANTSNMP 295
Query: 318 VAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLG 377
VAAREASIY G+T++EYFRD G++V++MADSTSRWAEALREIS RL EMPA+ GYP YL
Sbjct: 296 VAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLA 355
Query: 378 ARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 437
ARLA+FYERAG+V LG EG+V+IVGAVSPPGGD S+PVT +TL IV FW LD L
Sbjct: 356 ARLAAFYERAGKVITLGG--EEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASL 413
Query: 438 AQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVP-LRTKVKEILQEEEDLSEIVQLVGK 496
A R+HFP+INW SYS + ALD +Y +N E P LR + E+LQ E L EIVQLVG
Sbjct: 414 AFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVGP 473
Query: 497 ASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVEST 556
+L +++++ +EV +++++DFLQQN+Y D +C K G+++ ++AFY + A++
Sbjct: 474 DALQDAERLVIEVGRIIREDFLQQNAYHEVDAYCSMKKAYGIMKMILAFYKEAEAAIKRG 533
Query: 557 AQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRNL 613
+ + V L ++ ++ E + A F++ ++IQ AF+ L
Sbjct: 534 VSIDEILQLPV--------LERIGRARYVS-----EEEFPAYFEEAMKEIQGAFKAL 577
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 552 bits (1423), Expect = e-157, Method: Compositional matrix adjust.
Identities = 296/597 (49%), Positives = 396/597 (66%), Gaps = 24/597 (4%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + ++GP V A+ M G+ MY++ +VG LVGEIIRL+GD A +QVYE+TSG+ VG+P
Sbjct: 4 GVIQKIAGPAVIAKGMLGARMYDISKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEP 63
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG PL+VELGPG+L I+DGIQRPL+ I E IYI +GV + AL+R+ W + PM
Sbjct: 64 VVSTGLPLAVELGPGMLNGIYDGIQRPLERIRE-KTGIYITRGVVVHALDREKKWAWTPM 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGE 197
+K G + GG G V E HK+++PP +G V + PAG Y V+E V+ E DG
Sbjct: 123 -VKPGDEVRGGMVLGTVPEFGFT-HKILVPPDVRGRVKEVKPAGEYTVEEPVVVLE-DGT 179
Query: 198 KSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVI 257
+ K M KL N P LTG R+LD LFP +GGT AIPG FG GK+V
Sbjct: 180 ELK--MYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVT 237
Query: 258 SQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMP 317
Q+L+K+SN+DV+VYVG GERGNEM +VL +FPELT G +M RT L+ANTSNMP
Sbjct: 238 QQSLAKWSNADVVVYVGSGERGNEMTDVLVEFPELTDPKTG--GPLMHRTVLIANTSNMP 295
Query: 318 VAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLG 377
VAAREASIY G+T++EYFRD G++V++MADSTSRWAEALREIS RL EMPA+ GYP YL
Sbjct: 296 VAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLA 355
Query: 378 ARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 437
ARLA+FYERAG+V LG EG+V+IVGAVSPPGGD S+PVT +TL IV FW LD L
Sbjct: 356 ARLAAFYERAGKVITLGG--EEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASL 413
Query: 438 AQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVP-LRTKVKEILQEEEDLSEIVQLVGK 496
A R+HFP+INW SYS + ALD +Y +N E P LR + E+LQ E L EIVQLVG
Sbjct: 414 AFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVGP 473
Query: 497 ASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVEST 556
+L +++++ +EV +++++DFLQQN+Y D + K G+++ ++AFY + A++
Sbjct: 474 DALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMKMILAFYKEAEAAIKRG 533
Query: 557 AQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRNL 613
+ + V L ++ ++ E + A F++ ++IQ AF+ L
Sbjct: 534 VSIDEILQLPV--------LERIGRARYVS-----EEEFPAYFEEAMKEIQGAFKAL 577
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 551 bits (1420), Expect = e-157, Method: Compositional matrix adjust.
Identities = 271/539 (50%), Positives = 380/539 (70%), Gaps = 5/539 (0%)
Query: 16 RFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVG 75
+ G + VSGP+V AE MS +++ ++ VG ++GEII + D+A+IQVYEETSG+ G
Sbjct: 9 QIGKIIKVSGPLVMAENMSEASIQDMCLVGDLGVIGEIIEMRQDVASIQVYEETSGIGPG 68
Query: 76 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFN 135
+PV TG+ LSVELGPGI+ +FDGIQRPL E++QS ++ +GV +PAL+ + W F
Sbjct: 69 EPVRSTGEALSVELGPGIISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFE 128
Query: 136 PMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFD 195
++ G+ ++ GD G V E +++HK+++P KGTV I +G++ +D+ + E +
Sbjct: 129 A-TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKIE-SGSFTIDDPICVIETE 186
Query: 196 GEKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT 255
+ TM +KL + P++TGQRV+D+ FP GG A+PG FG GKT
Sbjct: 187 QGLKELTMMQKWPVRRGRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKT 246
Query: 256 VISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSN 315
V+ ++K+S+ D++VYVGCGERGNEM +V+ +FPEL G ES+M+RT L+ANTSN
Sbjct: 247 VVQHQIAKWSDVDLVVYVGCGERGNEMTDVVNEFPELIDPNTG--ESLMERTVLIANTSN 304
Query: 316 MPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAY 375
MPVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALRE+SGRL EMP D GYPAY
Sbjct: 305 MPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAY 364
Query: 376 LGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDK 435
LG+RLA +YER+GRV LG+ REGS++ + AVSP GGD S+PVT TL +V+VFWGLD
Sbjct: 365 LGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDS 424
Query: 436 KLAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLV 494
LAQ++HFPSINW+ SYS Y + + D+ ++ + T+ ILQEEE L+EIV+LV
Sbjct: 425 SLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVRLV 484
Query: 495 GKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAV 553
G SL+++D++TLEVAK +++D+LQQN++ D F K ML+ ++ F +R A+
Sbjct: 485 GIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKAL 543
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 521 bits (1342), Expect = e-148, Method: Compositional matrix adjust.
Identities = 263/539 (48%), Positives = 365/539 (67%), Gaps = 5/539 (0%)
Query: 16 RFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVG 75
+ G + VSGP+V AE S +++ + VG ++GEII D+A+IQVYEETSG+ G
Sbjct: 9 QIGKIIKVSGPLVXAENXSEASIQDXCLVGDLGVIGEIIEXRQDVASIQVYEETSGIGPG 68
Query: 76 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFN 135
+PV TG+ LSVELGPGI+ FDGIQRPL E++QS ++ +GV +PAL+ + W F
Sbjct: 69 EPVRSTGEALSVELGPGIISQXFDGIQRPLDTFXEVTQSNFLGRGVQLPALDHEKQWWFE 128
Query: 136 PMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFD 195
++ G+ ++ GD G V E +++HK+ +P KGTV I +G++ +D+ + E +
Sbjct: 129 -ATIEEGTEVSAGDIIGYVDETKIIQHKIXVPNGIKGTVQKIE-SGSFTIDDPICVIETE 186
Query: 196 GEKSKYTMXXXXXXXXXXXXTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT 255
+ T +KL + P +TGQRV+D+ FP GG A+PG FG GKT
Sbjct: 187 QGLKELTXXQKWPVRRGRPIKQKLNPDVPXITGQRVIDTFFPVTKGGAAAVPGPFGAGKT 246
Query: 256 VISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSN 315
V+ ++K+S+ D++VYVGCGERGNE +V+ +FPEL G ES+ +RT L+ANTSN
Sbjct: 247 VVQHQIAKWSDVDLVVYVGCGERGNEXTDVVNEFPELIDPNTG--ESLXERTVLIANTSN 304
Query: 316 MPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAY 375
PVAAREASIYTGIT++EYFRD GY+V++ ADSTSRWAEALRE SGRL E P D GYPAY
Sbjct: 305 XPVAAREASIYTGITIAEYFRDXGYDVAIXADSTSRWAEALREXSGRLEEXPGDEGYPAY 364
Query: 376 LGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDK 435
LG+RLA +YER+GRV LG+ REGS++ + AVSP GGD S+PVT TL +V+VFWGLD
Sbjct: 365 LGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDS 424
Query: 436 KLAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLV 494
LAQ++HFPSINW+ SYS Y + + D+ ++ T+ ILQEEE L+EIV+LV
Sbjct: 425 SLAQKRHFPSINWIQSYSLYSTEVGRYXDQILQQDWSDXVTEGXRILQEEEQLNEIVRLV 484
Query: 495 GKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAV 553
G SL+++D++TLEVAK +++D+LQQN++ D F K L+ ++ F +R A+
Sbjct: 485 GIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNXLKVILTFGKEARKAL 543
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 151/306 (49%), Gaps = 32/306 (10%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK---YSNSDVIVYVGCGER--- 278
L TG +V+D L P + GG + G G GKTV+ Q L + + V+ G GER
Sbjct: 135 LETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTRE 194
Query: 279 GNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRD- 337
GN++ ++D ++ +T +V N P AR TG+T++EYFRD
Sbjct: 195 GNDLYHEMKD------------SGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDE 242
Query: 338 MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPD 397
G + + D+ R+ +A E+S L MP+ GY L + ER
Sbjct: 243 QGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERI-------TST 295
Query: 398 REGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMR 457
+GS++ + A+ P D++DP + T + L++KLA+ +P+++ L+S S+ +
Sbjct: 296 AKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALA 355
Query: 458 ALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDF 517
+ + H + + KV++ L+ ++L +I+ ++G L++ DK+ + A+ ++ F
Sbjct: 356 P--EIVGEEHYQ---VARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQ-FF 409
Query: 518 LQQNSY 523
L QN +
Sbjct: 410 LSQNFH 415
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 18 GFVYAVSGPVVTAEKMSGS--AMYELVRVGY---------FELVGEI-IRLEGDMATIQV 65
G V V GPVV + +G A+Y +++ + +L E+ + L D
Sbjct: 4 GRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIA 63
Query: 66 YEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
T G+ G V+ TG P+SV +G LG +F+ + P+
Sbjct: 64 MASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPI 103
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 32/307 (10%)
Query: 221 ANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQAL---SKYSNSDVIVYVGCGE 277
A+ L TG +V+D L P GG + G G GKTV+ Q L + + V+ G GE
Sbjct: 124 ADEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGE 183
Query: 278 R---GNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEY 334
R GN++ ++D ++ +T++V N P AR TG+T++EY
Sbjct: 184 RTREGNDLYHEMKD------------SGVISKTSMVFGQMNEPPGARLRVALTGLTMAEY 231
Query: 335 FRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL 393
FRD G +V + D+ R+ +A E+S L MP+ GY L + ER K
Sbjct: 232 FRDREGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK-- 289
Query: 394 GNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYS 453
+GS++ + A+ P D++DP + T + L++KLA+ +P+++ L S S
Sbjct: 290 -----KGSITSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLAEMGIYPAVDPLASTS 344
Query: 454 KYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLL 513
+ + + H + V+++LQ DL +I+ ++G L++ DK+ + A+ +
Sbjct: 345 RILSPA--VVGEEHYR---VARGVQQVLQRYNDLQDIIAILGMDELSDEDKLIVARARKI 399
Query: 514 KDDFLQQ 520
+ FL Q
Sbjct: 400 Q-RFLSQ 405
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 18 GFVYAVSGPVVTAEKMSGSA--MYELVRV----GYFELVGEIIRLEGDMATIQVYEETSG 71
G + V GPVV + SG +Y + + G V + L ++ T G
Sbjct: 4 GRIIQVMGPVVDIQFESGQLPDIYNAITIERPQGGTLTVEAAVHLGDNVVRCVAMASTDG 63
Query: 72 VTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELS 112
+ G + TG P+SV +G LG +F+ + P+ + E++
Sbjct: 64 LVRGLEAVDTGAPISVPVGKATLGRVFNVLGEPIDEQGEVN 104
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 114/236 (48%), Gaps = 17/236 (7%)
Query: 222 NYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNE 281
+ P + G R +D L C +G I G GK+ + + +++D+IV GERG E
Sbjct: 52 DQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGRE 111
Query: 282 MAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYN 341
+ E L P+ S + + LV TS+ P R + +T T++EYFRD G N
Sbjct: 112 VNEFLALLPQ----------STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKN 161
Query: 342 VSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401
V +M DS +R+A A R++ E G+P + + L ERAG P +GS
Sbjct: 162 VLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAG-------PAPKGS 214
Query: 402 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMR 457
++ + V + +DP+ I+ L ++LA+ HFP+I+ +S S+ M
Sbjct: 215 ITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMH 270
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 149/304 (49%), Gaps = 29/304 (9%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK---YSNSDVIVYVGCGERGNE 281
L TG +V+D L P GG + G G GKTV Q L ++ V+ G GER E
Sbjct: 129 LETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTRE 188
Query: 282 MAEVLRDFPEL-TIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDM-G 339
++ R+ E I ++G ES + LV N P AR TG+T++EYFRD G
Sbjct: 189 GNDLYREMKETGVINLEG--ES---KVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 243
Query: 340 YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDRE 399
+V + D+ R+ +A E+S L +P+ GY L + ER K +
Sbjct: 244 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTK-------K 296
Query: 400 GSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRAL 459
GSV+ V AV P D +DP + T + L + +++ +P+++ L S S+ + A
Sbjct: 297 GSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAA 356
Query: 460 ---DDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDD 516
+ YD + +KV+E LQ + L +I+ ++G L+E DK+T+E A+ ++
Sbjct: 357 VVGQEHYD--------VASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQ-R 407
Query: 517 FLQQ 520
FL Q
Sbjct: 408 FLSQ 411
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPAL-N 127
T G+ G+ VL TG P+SV +G LG I + I P+ + + + P + P+
Sbjct: 62 TEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAE 121
Query: 128 RDVSWEFNPMNLKI 141
+ S E +K+
Sbjct: 122 QSTSAEILETGIKV 135
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 149/304 (49%), Gaps = 29/304 (9%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK---YSNSDVIVYVGCGERGNE 281
L TG +V+D L P GG + G G GKTV Q L ++ V+ G GER E
Sbjct: 129 LETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTRE 188
Query: 282 MAEVLRDFPEL-TIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDM-G 339
++ R+ E I ++G ES + LV N P AR TG+T++EYFRD G
Sbjct: 189 GNDLYREMKETGVINLEG--ES---KVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 243
Query: 340 YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDRE 399
+V + D+ R+ +A E+S L +P+ GY L + ER K +
Sbjct: 244 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTK-------K 296
Query: 400 GSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRAL 459
GSV+ V AV P D +DP + T + L + +++ +P+++ L S S+ + A
Sbjct: 297 GSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAA 356
Query: 460 ---DDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDD 516
+ YD + +KV+E LQ + L +I+ ++G L+E DK+T+E A+ ++
Sbjct: 357 VVGQEHYD--------VASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQ-R 407
Query: 517 FLQQ 520
FL Q
Sbjct: 408 FLSQ 411
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPAL-N 127
T G+ G+ VL TG P+SV +G LG I + I P+ + + + P + P+
Sbjct: 62 TEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAE 121
Query: 128 RDVSWEFNPMNLKI 141
+ S E +K+
Sbjct: 122 QSTSAEILETGIKV 135
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 149/304 (49%), Gaps = 29/304 (9%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK---YSNSDVIVYVGCGERGNE 281
L TG +V+D L P GG + G G GKTV Q L ++ V+ G GER E
Sbjct: 140 LETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTRE 199
Query: 282 MAEVLRDFPEL-TIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDM-G 339
++ R+ E I ++G ES + LV N P AR TG+T++EYFRD G
Sbjct: 200 GNDLYREMKETGVINLEG--ES---KVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 254
Query: 340 YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDRE 399
+V + D+ R+ +A E+S L +P+ GY L + ER K +
Sbjct: 255 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTK-------K 307
Query: 400 GSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRAL 459
GSV+ V AV P D +DP + T + L + +++ +P+++ L S S+ + A
Sbjct: 308 GSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAA 367
Query: 460 ---DDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDD 516
+ YD + +KV+E LQ + L +I+ ++G L+E DK+T+E A+ ++
Sbjct: 368 VVGQEHYD--------VASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQ-R 418
Query: 517 FLQQ 520
FL Q
Sbjct: 419 FLSQ 422
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPAL-N 127
T G+ G+ VL TG P+SV +G LG I + I P+ + + + P + P+
Sbjct: 73 TEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAE 132
Query: 128 RDVSWEFNPMNLKI 141
+ S E +K+
Sbjct: 133 QSTSAEILETGIKV 146
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 149/304 (49%), Gaps = 29/304 (9%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK---YSNSDVIVYVGCGERGNE 281
L TG +V+D L P GG + G G GKTV Q L ++ V+ G GER E
Sbjct: 134 LETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTRE 193
Query: 282 MAEVLRDFPEL-TIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDM-G 339
++ R+ E I ++G ES + LV N P AR TG+T++EYFRD G
Sbjct: 194 GNDLYREMKETGVINLEG--ES---KVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 248
Query: 340 YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDRE 399
+V + D+ R+ +A E+S L +P+ GY L + ER K +
Sbjct: 249 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTK-------K 301
Query: 400 GSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRAL 459
GSV+ V AV P D +DP + T + L + +++ +P+++ L S S+ + A
Sbjct: 302 GSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAA 361
Query: 460 ---DDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDD 516
+ YD + +KV+E LQ + L +I+ ++G L+E DK+T+E A+ ++
Sbjct: 362 VVGQEHYD--------VASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQ-R 412
Query: 517 FLQQ 520
FL Q
Sbjct: 413 FLSQ 416
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPAL-N 127
T G+ G+ VL TG P+SV +G LG I + I P+ + + + P + P+
Sbjct: 67 TEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAE 126
Query: 128 RDVSWEFNPMNLKI 141
+ S E +K+
Sbjct: 127 QSTSAEILETGIKV 140
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 148/304 (48%), Gaps = 29/304 (9%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK---YSNSDVIVYVGCGERGNE 281
L TG +V+D L P GG + G G GKTV Q L ++ V+ G GER E
Sbjct: 140 LETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTRE 199
Query: 282 MAEVLRDFPEL-TIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDM-G 339
++ R+ E I ++G + + LV N P AR TG+T++EYFRD G
Sbjct: 200 GNDLYREMKETGVINLEGES-----KVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 254
Query: 340 YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDRE 399
+V + D+ R+ +A E+S L +P+ GY L + ER K +
Sbjct: 255 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAFGYQPTLATDMGLLQERITTTK-------K 307
Query: 400 GSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRAL 459
GSV+ V AV P D +DP + T + L + +++ +P+++ L S S+ + A
Sbjct: 308 GSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAA 367
Query: 460 ---DDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDD 516
+ YD + +KV+E LQ + L +I+ ++G L+E DK+T+E A+ ++
Sbjct: 368 VVGQEHYD--------VASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQ-R 418
Query: 517 FLQQ 520
FL Q
Sbjct: 419 FLSQ 422
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPAL-N 127
T G+ G+ VL TG P+SV +G LG I + I P+ + + + P + P+
Sbjct: 73 TEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAE 132
Query: 128 RDVSWEFNPMNLKI 141
+ S E +K+
Sbjct: 133 QSTSAEILETGIKV 146
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 148/304 (48%), Gaps = 29/304 (9%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK---YSNSDVIVYVGCGERGNE 281
L TG +V+D L P GG + G G GKTV Q L ++ V+ G GER E
Sbjct: 167 LETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTRE 226
Query: 282 MAEVLRDFPEL-TIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDM-G 339
++ R+ E I ++G + + LV N P AR TG+T++EYFRD G
Sbjct: 227 GNDLYREMKETGVINLEGES-----KVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 281
Query: 340 YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDRE 399
+V + D+ R+ +A E+S L +P+ GY L + ER K +
Sbjct: 282 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTK-------K 334
Query: 400 GSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRAL 459
GSV+ V AV P D +DP + T + L + +++ +P+++ L S S+ + A
Sbjct: 335 GSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAA 394
Query: 460 ---DDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDD 516
+ YD + +KV+E LQ + L +I+ ++G L+E DK+T+E A+ ++
Sbjct: 395 VVGQEHYD--------VASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQ-R 445
Query: 517 FLQQ 520
FL Q
Sbjct: 446 FLSQ 449
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPAL-N 127
T G+ G+ VL TG P+SV +G LG I + I P+ + + + P + P+
Sbjct: 100 TEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAE 159
Query: 128 RDVSWEFNPMNLKI 141
+ S E +K+
Sbjct: 160 QSTSAEILETGIKV 173
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 42/338 (12%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV--------ISQALSKYSNSDVIVYVGCG 276
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 137 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 191
Query: 277 ERGNEMAEVLRDFPELTIEVDGVT--ESIMKRTTLVANTSNMPVAAREASIYTGITLSEY 334
ER E ++ + E GV + + LV N P AR TG+T++EY
Sbjct: 192 ERTREGNDLYHEMIE-----SGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 246
Query: 335 FRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL 393
FRD G +V + D+ R+ +A E+S L +P+ GY L + + ER K
Sbjct: 247 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-- 304
Query: 394 GNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYS 453
+GS++ V A+ P D +DP + T + L + +A+ +P+++ L S S
Sbjct: 305 -----KGSITSVQAIXVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS 359
Query: 454 KYMRALDDFYDKN--HPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITL---- 507
+ M D N E + V++ILQ+ + L +I+ ++G L+E DK+T+
Sbjct: 360 RIM-------DPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRAR 412
Query: 508 EVAKLLKDDFLQQNSYSPY-DRFCPFYKTVGMLRNMIA 544
++ + L F ++ + + P +T+ + ++A
Sbjct: 413 KIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILA 450
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKD 107
T G+ G VL +G P+ + +GP LG I + I P+ +
Sbjct: 70 TEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDE 108
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 42/338 (12%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV--------ISQALSKYSNSDVIVYVGCG 276
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 125 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 179
Query: 277 ERGNEMAEVLRDFPELTIEVDGVT--ESIMKRTTLVANTSNMPVAAREASIYTGITLSEY 334
ER E ++ + E GV + + LV N P AR TG+T++EY
Sbjct: 180 ERTREGNDLYHEMIE-----SGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 234
Query: 335 FRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL 393
FRD G +V + D+ R+ +A E+S L +P+ GY L + + ER K
Sbjct: 235 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-- 292
Query: 394 GNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYS 453
+GS++ V A+ P D +DP + T + L + +A+ +P+++ L S S
Sbjct: 293 -----KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS 347
Query: 454 KYMRALDDFYDKN--HPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITL---- 507
+ M D N E + V++ILQ+ + L +I+ ++G L+E DK+T+
Sbjct: 348 RIM-------DPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRAR 400
Query: 508 EVAKLLKDDFLQQNSYSPY-DRFCPFYKTVGMLRNMIA 544
++ + L F ++ + + P +T+ + ++A
Sbjct: 401 KIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILA 438
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKD 107
T G+ G VL +G P+ + +GP LG I + I P+ +
Sbjct: 58 TEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDE 96
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 42/338 (12%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV--------ISQALSKYSNSDVIVYVGCG 276
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 133 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 187
Query: 277 ERGNEMAEVLRDFPELTIEVDGVT--ESIMKRTTLVANTSNMPVAAREASIYTGITLSEY 334
ER E ++ + E GV + + LV N P AR TG+T++EY
Sbjct: 188 ERTREGNDLYHEMIE-----SGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 242
Query: 335 FRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL 393
FRD G +V + D+ R+ +A E+S L +P+ GY L + + ER K
Sbjct: 243 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-- 300
Query: 394 GNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYS 453
+GS++ V A+ P D +DP + T + L + +A+ +P+++ L S S
Sbjct: 301 -----KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS 355
Query: 454 KYMRALDDFYDKN--HPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITL---- 507
+ M D N E + V++ILQ+ + L +I+ ++G L+E DK+T+
Sbjct: 356 RIM-------DPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRAR 408
Query: 508 EVAKLLKDDFLQQNSYSPY-DRFCPFYKTVGMLRNMIA 544
++ + L F ++ + + P +T+ + ++A
Sbjct: 409 KIQRFLSQPFQVAEVFTGHMGKLVPLKETIKGFQQILA 446
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIP 124
T G+ G VL +G P+ + +GP LG I + I P+ + + + P P
Sbjct: 66 TEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAP 121
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 42/338 (12%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV--------ISQALSKYSNSDVIVYVGCG 276
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 135 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 189
Query: 277 ERGNEMAEVLRDFPELTIEVDGVT--ESIMKRTTLVANTSNMPVAAREASIYTGITLSEY 334
ER E ++ + E GV + + LV N P AR TG+T++EY
Sbjct: 190 ERTREGNDLYHEMIE-----SGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 244
Query: 335 FRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL 393
FRD G +V + D+ R+ +A E+S L +P+ GY L + + ER K
Sbjct: 245 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-- 302
Query: 394 GNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYS 453
+GS++ V A+ P D +DP + T + L + +A+ +P+++ L S S
Sbjct: 303 -----KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS 357
Query: 454 KYMRALDDFYDKN--HPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITL---- 507
+ M D N E + V++ILQ+ + L +I+ ++G L+E DK+T+
Sbjct: 358 RIM-------DPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRAR 410
Query: 508 EVAKLLKDDFLQQNSYSPY-DRFCPFYKTVGMLRNMIA 544
++ + L F ++ + + P +T+ + ++A
Sbjct: 411 KIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILA 448
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKD 107
T G+ G VL +G P+ + +GP LG I + I P+ +
Sbjct: 68 TEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDE 106
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 42/338 (12%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV--------ISQALSKYSNSDVIVYVGCG 276
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 137 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 191
Query: 277 ERGNEMAEVLRDFPELTIEVDGVT--ESIMKRTTLVANTSNMPVAAREASIYTGITLSEY 334
ER E ++ + E GV + + LV N P AR TG+T++EY
Sbjct: 192 ERTREGNDLYHEMIE-----SGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 246
Query: 335 FRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL 393
FRD G +V + D+ R+ +A E+S L +P+ GY L + + ER K
Sbjct: 247 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-- 304
Query: 394 GNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYS 453
+GS++ V A+ P D +DP + T + L + +A+ +P+++ L S S
Sbjct: 305 -----KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS 359
Query: 454 KYMRALDDFYDKN--HPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITL---- 507
+ M D N E + V++ILQ+ + L +I+ ++G L+E DK+T+
Sbjct: 360 RIM-------DPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRAR 412
Query: 508 EVAKLLKDDFLQQNSYSPY-DRFCPFYKTVGMLRNMIA 544
++ + L F ++ + + P +T+ + ++A
Sbjct: 413 KIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILA 450
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKD 107
T G+ G VL +G P+ + +GP LG I + I P+ +
Sbjct: 70 TEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDE 108
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 42/338 (12%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV--------ISQALSKYSNSDVIVYVGCG 276
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 137 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 191
Query: 277 ERGNEMAEVLRDFPELTIEVDGVT--ESIMKRTTLVANTSNMPVAAREASIYTGITLSEY 334
ER E ++ + E GV + + LV N P AR TG+T++EY
Sbjct: 192 ERTREGNDLYHEMIE-----SGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 246
Query: 335 FRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL 393
FRD G +V + D+ R+ +A E+S L +P+ GY L + + ER K
Sbjct: 247 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-- 304
Query: 394 GNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYS 453
+GS++ V A+ P D +DP + T + L + +A+ +P+++ L S S
Sbjct: 305 -----KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS 359
Query: 454 KYMRALDDFYDKN--HPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITL---- 507
+ M D N E + V++ILQ+ + L +I+ ++G L+E DK+T+
Sbjct: 360 RIM-------DPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRAR 412
Query: 508 EVAKLLKDDFLQQNSYSPY-DRFCPFYKTVGMLRNMIA 544
++ + L F ++ + + P +T+ + ++A
Sbjct: 413 KIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILA 450
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKD 107
T G+ G VL +G P+ + +GP LG I + I P+ +
Sbjct: 70 TEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDE 108
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 42/338 (12%)
Query: 225 LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV--------ISQALSKYSNSDVIVYVGCG 276
L+TG +V+D L P GG + G G GKTV +++A YS V+ G G
Sbjct: 183 LVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-----VFAGVG 237
Query: 277 ERGNEMAEVLRDFPELTIEVDGVT--ESIMKRTTLVANTSNMPVAAREASIYTGITLSEY 334
ER E ++ + E GV + + LV N P AR TG+T++EY
Sbjct: 238 ERTREGNDLYHEMIE-----SGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEY 292
Query: 335 FRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL 393
FRD G +V + D+ R+ +A E+S L +P+ GY L + + ER K
Sbjct: 293 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-- 350
Query: 394 GNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYS 453
+GS++ V A+ P D +DP + T + L + +A+ +P+++ L S S
Sbjct: 351 -----KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS 405
Query: 454 KYMRALDDFYDKN--HPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITL---- 507
+ M D N E + V++ILQ+ + L +I+ ++G L+E DK+T+
Sbjct: 406 RIM-------DPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRAR 458
Query: 508 EVAKLLKDDFLQQNSYSPY-DRFCPFYKTVGMLRNMIA 544
++ + L F ++ + + P +T+ + ++A
Sbjct: 459 KIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILA 496
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKD 107
T G+ G VL +G P+ + +GP LG I + I P+ +
Sbjct: 116 TEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDE 154
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 146/311 (46%), Gaps = 20/311 (6%)
Query: 217 EKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276
++ P + L TG R +++L G + G GK+V+ +++Y+ +DVIV G
Sbjct: 133 QRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG 192
Query: 277 ERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFR 336
ERG E+ +DF E + DG S++ + A P+ + + Y ++E FR
Sbjct: 193 ERGREV----KDFIENILGPDGRARSVV----IAAPADVSPLLRMQGAAYA-TRIAEDFR 243
Query: 337 DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNP 396
D G +V ++ DS +R+A A REI+ + E PA GYP + A+L + ERAG G
Sbjct: 244 DRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGG-- 301
Query: 397 DREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYM 456
GS++ V G D DP+ + I+ L ++LA+ H+P+I+ S S+ M
Sbjct: 302 ---GSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAM 358
Query: 457 RALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDD 516
AL + H V L ++ Q DL V K S DK +L +
Sbjct: 359 TAL---ITEQHYARVRLFKQLLSSFQRNRDLVS-VGAYAKGSDPMLDKAITLWPQL--EA 412
Query: 517 FLQQNSYSPYD 527
FLQQ + D
Sbjct: 413 FLQQGIFERAD 423
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 21/107 (19%)
Query: 48 ELVGEIIRLEGDMATIQVYEETSGVTVGDPV---------LRTGKPLSVELGPGILGSIF 98
E+ E++ G + EE G+ G V L++GK L LGP +LG +
Sbjct: 46 EVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLP--LGPALLGRVL 103
Query: 99 DGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHI 145
DG +PL + P + AL ++ FNP+ H+
Sbjct: 104 DGGGKPLDGLPA-------PDTLETGAL---ITPPFNPLQRTPIEHV 140
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 144/311 (46%), Gaps = 32/311 (10%)
Query: 217 EKLPANYPLL-TGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK---YSNSDVIVY 272
E+L + LL TG +V+D + P GG + G G GKTV L + +S V+
Sbjct: 117 EELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVF 176
Query: 273 VGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLS 332
G GER E + + E+T +++ + +LV N P R TG+T++
Sbjct: 177 AGVGERTREGNDF---YHEMT------DSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMA 227
Query: 333 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKC 392
E FRD G +V + D+ R+ A E+S L MP+ GY L + ER K
Sbjct: 228 EKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKT 287
Query: 393 LGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISY 452
GS++ V AV P D +DP + T + L +++A +P+++ L S
Sbjct: 288 -------GSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDST 340
Query: 453 SKYMRAL---DDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEV 509
S+ + L + YD V+ ILQ ++L +I+ ++G L+E DK+ +
Sbjct: 341 SRQLDPLVVGQEHYDTAR--------GVQSILQRYQELKDIIAILGMDELSEEDKLVVAR 392
Query: 510 AKLLKDDFLQQ 520
A+ ++ FL Q
Sbjct: 393 ARKIQ-RFLSQ 402
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 143/299 (47%), Gaps = 21/299 (7%)
Query: 227 TGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK---YSNSDVIVYVGCGERGNEMA 283
TG +V++ L P GG + G G GKTV+ L ++ V V+ G GER E
Sbjct: 151 TGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGN 210
Query: 284 EVLRDFPEL-TIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMG-YN 341
++ + E I + ES + LV N P AR T +T++EYFRD+ +
Sbjct: 211 DLYMEMKESGVINEQNIAES---KVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQD 267
Query: 342 VSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401
V + D+ R+ +A E+S L MP+ GY L + S ER K EGS
Sbjct: 268 VLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTK-------EGS 320
Query: 402 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDD 461
++ + AV P D +DP + T + L + LA + +P+++ L S S ++
Sbjct: 321 ITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP--R 378
Query: 462 FYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQ 520
+ H E +VKE LQ ++L +I+ ++G L+E D++T+ A+ + + FL Q
Sbjct: 379 IVGEEHYEIA---QRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKI-ERFLSQ 433
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNR 128
T G+T G V+ TG PLSV +G LG IF+ + P+ ++ + P + PA +
Sbjct: 82 TDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQ 141
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 22/310 (7%)
Query: 218 KLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN------SDVIV 271
+LP + TG +D V G I A G T I+ +++ ++ + +V
Sbjct: 120 RLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHTEIALQIARQASVPGSESAFAVV 179
Query: 272 YVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITL 331
+ G E + DF E G E R + N ++ P R + +T
Sbjct: 180 FAAMGITNEEAQYFMSDF-----EKTGALE----RAVVFLNLADDPAVERIVTPRMALTA 230
Query: 332 SEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRV 390
+EY + G +V ++ + +AEALR++ E+P GYP Y+ LA+ YERAG V
Sbjct: 231 AEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIV 290
Query: 391 KCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLI 450
K +GSV+ + +S PG D + P+ + I + + ++L ++ +P IN L
Sbjct: 291 KGA-----KGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLP 345
Query: 451 SYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVA 510
S S+ M + K + + ++ E DL +V +VGK +L+E D LE A
Sbjct: 346 SLSRLMNS-GIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFA 404
Query: 511 KLLKDDFLQQ 520
L +D F++Q
Sbjct: 405 DLFEDKFVRQ 414
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 20 VYAVSGPVVTAEKMSGSAMYELVRVGYFELV---GEIIRLEGDMATIQVYEETSGVTVGD 76
+ ++GP++ EK E+V + + G+++ D+ +QV+E T G+
Sbjct: 8 ITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKDC 67
Query: 77 PVLRTGKPLSVELGPGILGSIFDGIQRP 104
V+ TG+ L + +LG I G P
Sbjct: 68 GVIFTGETLKLPASVDLLGRILSGSGEP 95
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 140/310 (45%), Gaps = 22/310 (7%)
Query: 218 KLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN------SDVIV 271
+LP + TG +D V G I A G I+ +++ ++ + +V
Sbjct: 129 RLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVV 188
Query: 272 YVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITL 331
+ G E + DF E G E R + N ++ P R + +T
Sbjct: 189 FAAMGITNEEAQYFMSDF-----EKTGALE----RAVVFLNLADDPAVERIVTPRMALTA 239
Query: 332 SEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRV 390
+EY + G +V ++ + +AEALR++ E+P GYP Y+ LA+ YERAG V
Sbjct: 240 AEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIV 299
Query: 391 KCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLI 450
K +GSV+ + +S PG D + P+ + I + + ++L ++ +P IN L
Sbjct: 300 KGA-----KGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLP 354
Query: 451 SYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVA 510
S S+ M + K + + ++ E DL +V +VGK +L+E D LE A
Sbjct: 355 SLSRLMNS-GIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFA 413
Query: 511 KLLKDDFLQQ 520
L +D F++Q
Sbjct: 414 DLFEDKFVRQ 423
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 20 VYAVSGPVVTAEKMSGSAMYELVRVGYFELV---GEIIRLEGDMATIQVYEETSGVTVGD 76
+ ++GP++ EK E+V + + G+++ D+ +QV+E T G+
Sbjct: 17 ITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKDC 76
Query: 77 PVLRTGKPLSVELGPGILGSIFDGIQRP 104
V+ TG+ L + +LG I G P
Sbjct: 77 GVIFTGETLKLPASVDLLGRILSGSGEP 104
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 140/310 (45%), Gaps = 22/310 (7%)
Query: 218 KLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN------SDVIV 271
+LP + TG +D V G I A G I+ +++ ++ + +V
Sbjct: 129 RLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVV 188
Query: 272 YVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITL 331
+ G E + DF E G E R + N ++ P R + +T
Sbjct: 189 FAAMGITNEEAQYFMSDF-----EKTGALE----RAVVFLNLADDPAVERIVTPRMALTA 239
Query: 332 SEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRV 390
+EY + G +V ++ + +AEALR++ E+P GYP Y+ LA+ YERAG V
Sbjct: 240 AEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIV 299
Query: 391 KCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLI 450
K +GSV+ + +S PG D + P+ + I + + ++L ++ +P IN L
Sbjct: 300 KGA-----KGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLP 354
Query: 451 SYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVA 510
S S+ M + K + + ++ E DL +V +VGK +L+E D LE A
Sbjct: 355 SLSRLMNS-GIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFA 413
Query: 511 KLLKDDFLQQ 520
L +D F++Q
Sbjct: 414 DLFEDKFVRQ 423
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 20 VYAVSGPVVTAEKMSGSAMYELVRVGYFELV---GEIIRLEGDMATIQVYEETSGVTVGD 76
+ ++GP++ EK E+V + + G+++ D+ +QV+E T G+
Sbjct: 17 ITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKDC 76
Query: 77 PVLRTGKPLSVELGPGILGSIFDGIQRP 104
V+ TG+ L + +LG I G P
Sbjct: 77 GVIFTGETLKLPASVDLLGRILSGSGEP 104
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 140/310 (45%), Gaps = 22/310 (7%)
Query: 218 KLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN------SDVIV 271
+LP + TG +D V G I A G I+ +++ ++ + +V
Sbjct: 120 RLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHAEIALQIARQASVPGSESAFAVV 179
Query: 272 YVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITL 331
+ G E + DF E G E R + N ++ P R + +T
Sbjct: 180 FAAMGITNEEAQYFMSDF-----EKTGALE----RAVVFLNLADDPAVERIVTPRMALTA 230
Query: 332 SEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRV 390
+EY + G +V ++ + +AEALR++ E+P GYP Y+ LA+ YERAG V
Sbjct: 231 AEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIV 290
Query: 391 KCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLI 450
K +GSV+ + +S PG D + P+ + I + + ++L ++ +P IN L
Sbjct: 291 KGA-----KGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLP 345
Query: 451 SYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVA 510
S S+ M + K + + ++ E DL +V +VGK +L+E D LE A
Sbjct: 346 SLSRLMNS-GIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFA 404
Query: 511 KLLKDDFLQQ 520
L +D F++Q
Sbjct: 405 DLFEDKFVRQ 414
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 20 VYAVSGPVVTAEKMSGSAMYELVRVGYFELV---GEIIRLEGDMATIQVYEETSGVTVGD 76
+ ++GP++ EK E+V + + G+++ D+ +QV+E T G+
Sbjct: 8 ITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKDC 67
Query: 77 PVLRTGKPLSVELGPGILGSIFDGIQRP 104
V+ TG+ L + +LG I G P
Sbjct: 68 GVIFTGETLKLPASVDLLGRILSGSGEP 95
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 140/310 (45%), Gaps = 22/310 (7%)
Query: 218 KLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN------SDVIV 271
+LP + TG +D V G I A G I+ +++ ++ + +V
Sbjct: 120 RLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPANEIALQIARQASVPGSESAFAVV 179
Query: 272 YVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITL 331
+ G E + DF E G E R + N ++ P R + +T
Sbjct: 180 FAAMGITNEEAQYFMSDF-----EKTGALE----RAVVFLNLADDPAVERIVTPRMALTA 230
Query: 332 SEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRV 390
+EY + G +V ++ + +AEALR++ E+P GYP Y+ LA+ YERAG V
Sbjct: 231 AEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIV 290
Query: 391 KCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLI 450
K +GSV+ + +S PG D + P+ + I + + ++L ++ +P IN L
Sbjct: 291 KGA-----KGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLP 345
Query: 451 SYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVA 510
S S+ M + K + + ++ E DL +V +VGK +L+E D LE A
Sbjct: 346 SLSRLMNS-GIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFA 404
Query: 511 KLLKDDFLQQ 520
L +D F++Q
Sbjct: 405 DLFEDKFVRQ 414
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 20 VYAVSGPVVTAEKMSGSAMYELVRVGYFELV---GEIIRLEGDMATIQVYEETSGVTVGD 76
+ ++GP++ EK E+V + + G+++ D+ +QV+E T G+
Sbjct: 8 ITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKDC 67
Query: 77 PVLRTGKPLSVELGPGILGSIFDGIQRP 104
V+ TG+ L + +LG I G P
Sbjct: 68 GVIFTGETLKLPASVDLLGRILSGSGEP 95
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 7/222 (3%)
Query: 304 MKRTTLVANTSNMPVAAREASIYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGR 362
+ R+ N +N P R A+ +T +EY + G +V ++ + +AEALREIS
Sbjct: 211 IDRSVXFXNLANDPAIERIATPRXALTAAEYLAYEKGXHVLVIXTDXTNYAEALREISAA 270
Query: 363 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSA 422
E+P GYP YL LA+ +ERAGR++ L +GSV+ + ++ P D + P+
Sbjct: 271 RREVPGRRGYPGYLYTNLATLFERAGRIRGL-----KGSVTQIPILTXPEDDKTHPIPDL 325
Query: 423 TLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQ 482
T I + L ++L + P I+ L S S+ ++ K + ++
Sbjct: 326 TGYITEGQIILTRELYKSGIQPPIDVLPSLSR-LKDKGTGAGKTREDHAATXNQLFAAYA 384
Query: 483 EEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYS 524
+ + E+ ++G+++L++ DKI + A+ +++++ Q Y+
Sbjct: 385 QGKQAKELAVVLGESALSDIDKIYAKFAERFENEYVNQGFYT 426
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 16/151 (10%)
Query: 20 VYAVSGPVVTAEKMSGSAMYEL--VRVGYFELV-GEIIRLEGDMATIQVYEETSGVTVGD 76
+ V GP+ EK+SG EL VR E+ G+++ ++ D A +Q++E TSG+ + +
Sbjct: 15 IKEVVGPLXAVEKVSGVKYEELIEVRXQNGEIRRGQVLEVQEDKAXVQIFEGTSGINLKN 74
Query: 77 PVLR-TGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIP-KGVNIPALNRDVSWEF 134
+R G PL + + +G +FDG+ RP + E+ Y+ G I + RD EF
Sbjct: 75 SSVRFLGHPLQLGVSEDXIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEF 134
Query: 135 NPMNLKIGSHITGGDQYGLVHENTLVKHKMI 165
I + I+ D H NTLV+ + +
Sbjct: 135 ------IQTGISAID-----HLNTLVRGQKL 154
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 144/313 (46%), Gaps = 25/313 (7%)
Query: 222 NYP---LLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY------SNSDVIVY 272
+YP + TG +D L V G + G ++ +++ S+ +V+
Sbjct: 129 DYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVF 188
Query: 273 VGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLS 332
G E + DF + T +D R+ + N +N P R A+ +T +
Sbjct: 189 AAIGITFEEAEFFMEDFRQ-TGAID--------RSVMFMNLANDPAIERIATPRMALTAA 239
Query: 333 EYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVK 391
EY + G +V ++ + +AEALREIS E+P GYP YL LA+ +ERAGR++
Sbjct: 240 EYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIR 299
Query: 392 CLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLIS 451
L +GSV+ + ++ P D + P+ T I + L ++L + P I+ L S
Sbjct: 300 GL-----KGSVTQIPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPS 354
Query: 452 YSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAK 511
S+ ++ K + ++ + + E+ ++G+++L++ DKI + A+
Sbjct: 355 LSR-LKDKGTGAGKTREDHAATMNQLFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAE 413
Query: 512 LLKDDFLQQNSYS 524
+++++ Q Y+
Sbjct: 414 RFENEYVNQGFYT 426
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 16/147 (10%)
Query: 20 VYAVSGPVVTAEKMSGSAMYEL--VRVGYFELV-GEIIRLEGDMATIQVYEETSGVTVGD 76
+ V GP++ EK+SG EL VR+ E+ G+++ ++ D A +Q++E TSG+ + +
Sbjct: 15 IKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSGINLKN 74
Query: 77 PVLR-TGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIP-KGVNIPALNRDVSWEF 134
+R G PL + + ++G +FDG+ RP + E+ Y+ G I + RD EF
Sbjct: 75 SSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEF 134
Query: 135 NPMNLKIGSHITGGDQYGLVHENTLVK 161
I + I+ D H NTLV+
Sbjct: 135 ------IQTGISAID-----HLNTLVR 150
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 24/238 (10%)
Query: 224 PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQ--ALSKYSNSDVIVYVGCGERGNE 281
PL TG +D++ P G I G GKT ++ L++ + + VYV G++ +
Sbjct: 146 PLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASS 205
Query: 282 MAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYN 341
+A+V+ +F E M+ T +VA T++ P + + YTG L+EYF +
Sbjct: 206 VAQVVTNFQE---------RGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERH 256
Query: 342 VSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERAGRVKCLGNPDR 398
++ D S+ A+A R++S L P YP YL +RL ERA ++ L
Sbjct: 257 TLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERAAKLSSLLG--- 310
Query: 399 EGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRKHFPSINWLISYSK 454
EGS++ + V GD S + + + I Q+F D L P+IN IS S+
Sbjct: 311 EGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSAD--LFNAGIRPAINVGISVSR 366
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 121/252 (48%), Gaps = 16/252 (6%)
Query: 270 IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGI 329
+V+ G E++ +++F E G + R+ L N ++ P R + +
Sbjct: 189 VVFAAMGITQRELSYFIQEF-----ERTGA----LSRSVLFLNKADDPTIERILTPRMAL 239
Query: 330 TLSEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAG 388
T++EY + Y+V ++ + ++EALREI E+P GYP Y+ LA+ YERAG
Sbjct: 240 TVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAG 299
Query: 389 RVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINW 448
V+ ++GSV+ + +S P D + P+ T I + L ++L ++ +P I+
Sbjct: 300 VVEG-----KKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDP 354
Query: 449 LISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLE 508
L S S+ M K + + ++ D+ ++V ++G+ +L E+D+ L+
Sbjct: 355 LPSLSRLMNN-GVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQ 413
Query: 509 VAKLLKDDFLQQ 520
A + F+ Q
Sbjct: 414 FADAFERFFINQ 425
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 13/75 (17%)
Query: 51 GEIIRLEGDMATIQVYEETSG-------VTVGDPVLRTGKPLSVELGPGILGSIFDGIQR 103
G++I + + A IQV+EET+G V++ + V R G +S E+ LG F+GI +
Sbjct: 45 GQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLG--VSKEM----LGRRFNGIGK 98
Query: 104 PLKDINELSQSIYIP 118
P+ + ++ +P
Sbjct: 99 PIDGLPPITPEKRLP 113
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 107/218 (49%), Gaps = 7/218 (3%)
Query: 304 MKRTTLVANTSNMPVAAREASIYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGR 362
+ R+ L N ++ P R + +T++EY + Y+V ++ + + EALREI
Sbjct: 214 LSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYCEALREIGAA 273
Query: 363 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSA 422
E+P GYP Y+ LA+ YERAG V+ ++GSV+ + +S P D + P+
Sbjct: 274 REEIPGRRGYPGYMYTDLATIYERAGVVEG-----KKGSVTQIPILSMPDDDRTHPIPDL 328
Query: 423 TLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQ 482
T I + L ++L ++ +P I+ L S S+ M K + + ++
Sbjct: 329 TGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNN-GVGKGKTREDHKQVSDQLYSAYA 387
Query: 483 EEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQ 520
D+ ++V ++G+ +L E+D+ L+ A + F+ Q
Sbjct: 388 NGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQ 425
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 13/75 (17%)
Query: 51 GEIIRLEGDMATIQVYEETSG-------VTVGDPVLRTGKPLSVELGPGILGSIFDGIQR 103
G++I + + A IQV+EET+G V++ + V R G +S E+ LG F+GI +
Sbjct: 45 GQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLG--VSKEM----LGRRFNGIGK 98
Query: 104 PLKDINELSQSIYIP 118
P+ + ++ +P
Sbjct: 99 PIDGLPPITPEKRLP 113
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 113/253 (44%), Gaps = 29/253 (11%)
Query: 217 EKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS-QALSKYSNSDV-IVYVG 274
E+ + P+ TG + +DS+ P G I G GKT ++ A+ +S + +YV
Sbjct: 138 ERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVA 197
Query: 275 CGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEY 334
G++ + ++ V+R E + T +V T++ A + + Y G + EY
Sbjct: 198 IGQKASTISNVVRKLEE---------HGALANTIVVVATASESAALQYLAPYAGCAMGEY 248
Query: 335 FRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERAGRVK 391
FRD G + ++ D S+ A A R+IS L P +P YL +RL ERA RV
Sbjct: 249 FRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRL---LERAARVN 305
Query: 392 C-------LGN-PDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRK 441
G + GS++ + + GD S V + + I Q+F L+ L
Sbjct: 306 AEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIF--LETNLFNAG 363
Query: 442 HFPSINWLISYSK 454
P++N IS S+
Sbjct: 364 IRPAVNPGISVSR 376
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 41/317 (12%)
Query: 224 PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS----------QALSKYSNSDVIVYV 273
P+ TG + +D+L P G I G GKT ++ S S VYV
Sbjct: 122 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 181
Query: 274 GCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSE 333
G++ + +A++++ + MK + +VA T++ + + +T ++ E
Sbjct: 182 AVGQKRSTVAQLVQTLEQ---------HDAMKYSIIVAATASEAAPLQYLAPFTAASIGE 232
Query: 334 YFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERAGRV 390
+FRD G + ++ D S+ A A R++S L P YP YL +RL ERA +
Sbjct: 233 WFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAK- 288
Query: 391 KCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRKHFPSINW 448
L + GS++ + + GGD S + + + I Q+F L+ +L + P+IN
Sbjct: 289 --LSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIF--LEAELFYKGIRPAINV 344
Query: 449 LISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLE 508
+S S+ A K + +K L + +++ Q + L S K TL
Sbjct: 345 GLSVSRVGSAAQVKALKQ------VAGSLKLFLAQYREVAAFAQF--GSDLDASTKQTLV 396
Query: 509 VAKLLKDDFLQQNSYSP 525
+ L L+QN YSP
Sbjct: 397 RGERLT-QLLKQNQYSP 412
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 51 GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
G + LE I ++ V G+ V RTG + V +GPG+LG + D + P+
Sbjct: 38 GMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 92
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 41/317 (12%)
Query: 224 PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS----------QALSKYSNSDVIVYV 273
P+ TG + +D+L P G I G GKT ++ S S VYV
Sbjct: 123 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 182
Query: 274 GCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSE 333
G++ + +A++++ + MK + +VA T++ + + +T ++ E
Sbjct: 183 AVGQKRSTVAQLVQTLEQ---------HDAMKYSIIVAATASEAAPLQYLAPFTAASIGE 233
Query: 334 YFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERAGRV 390
+FRD G + ++ D S+ A A R++S L P YP YL +RL ERA +
Sbjct: 234 WFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAK- 289
Query: 391 KCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRKHFPSINW 448
L + GS++ + + GGD S + + + I Q+F L+ +L + P+IN
Sbjct: 290 --LSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIF--LEAELFYKGIRPAINV 345
Query: 449 LISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLE 508
+S S+ A K + +K L + +++ Q + L S K TL
Sbjct: 346 GLSVSRVGSAAQVKALKQ------VAGSLKLFLAQYREVAAFAQF--GSDLDASTKQTLV 397
Query: 509 VAKLLKDDFLQQNSYSP 525
+ L L+QN YSP
Sbjct: 398 RGERLT-QLLKQNQYSP 413
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 51 GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
G + LE I ++ V G+ V RTG + V +GPG+LG + D + P+
Sbjct: 39 GMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 93
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 41/317 (12%)
Query: 224 PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS----------QALSKYSNSDVIVYV 273
P+ TG + +D+L P G I G GKT ++ S S VYV
Sbjct: 147 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 206
Query: 274 GCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSE 333
G++ + +A++++ + MK + +VA T++ + + +T ++ E
Sbjct: 207 AVGQKRSTVAQLVQTLEQ---------HDAMKYSIIVAATASEAAPLQYLAPFTAASIGE 257
Query: 334 YFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERAGRV 390
+FRD G + ++ D S+ A A R++S L P YP YL +RL ERA +
Sbjct: 258 WFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAK- 313
Query: 391 KCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRKHFPSINW 448
L + GS++ + + GGD S + + + I Q+F L+ +L + P+IN
Sbjct: 314 --LSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIF--LEAELFYKGIRPAINV 369
Query: 449 LISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLE 508
+S S+ A K + +K L + +++ Q + L S K TL
Sbjct: 370 GLSVSRVGSAAQVKALKQ------VAGSLKLFLAQYREVAAFAQF--GSDLDASTKQTLV 421
Query: 509 VAKLLKDDFLQQNSYSP 525
+ L L+QN YSP
Sbjct: 422 RGERLT-QLLKQNQYSP 437
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 51 GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
G + LE I ++ V G+ V RTG + V +GPG+LG + D + P+
Sbjct: 63 GMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 117
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 41/317 (12%)
Query: 224 PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS----------QALSKYSNSDVIVYV 273
P+ TG + +D+L P G I G GKT ++ S S VYV
Sbjct: 147 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 206
Query: 274 GCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSE 333
G++ + +A++++ + MK + +VA T++ + + +T ++ E
Sbjct: 207 AVGQKRSTVAQLVQTLEQ---------HDAMKYSIIVAATASEAAPLQYLAPFTAASIGE 257
Query: 334 YFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERAGRV 390
+FRD G + ++ D S+ A A R++S L P YP YL +RL ERA +
Sbjct: 258 WFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAK- 313
Query: 391 KCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRKHFPSINW 448
L + GS++ + + GGD S + + + I Q+F L+ +L + P+IN
Sbjct: 314 --LSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIF--LEAELFYKGIRPAINV 369
Query: 449 LISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLE 508
+S S+ A K + +K L + +++ Q + L S K TL
Sbjct: 370 GLSVSRVGSAAQVKALKQ------VAGSLKLFLAQYREVAAFAQF--GSDLDASTKQTLV 421
Query: 509 VAKLLKDDFLQQNSYSP 525
+ L L+QN YSP
Sbjct: 422 RGERLT-QLLKQNQYSP 437
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 72 VTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
V G+ V RTG + V +GPG+LG + D + P+
Sbjct: 84 VKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 117
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 41/317 (12%)
Query: 224 PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS----------QALSKYSNSDVIVYV 273
P+ TG + +D+L P G I G GKT ++ S S VYV
Sbjct: 182 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 241
Query: 274 GCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSE 333
G++ + +A++++ + MK + +VA T++ + + +T ++ E
Sbjct: 242 AVGQKRSTVAQLVQTLEQ---------HDAMKYSIIVAATASEAAPLQYLAPFTAASIGE 292
Query: 334 YFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERAGRV 390
+FRD G + ++ D S+ A A R++S L P YP YL +RL ERA +
Sbjct: 293 WFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAK- 348
Query: 391 KCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRKHFPSINW 448
L + GS++ + + GGD S + + + I Q+F L+ +L + P+IN
Sbjct: 349 --LSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIF--LEAELFYKGIRPAINV 404
Query: 449 LISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLE 508
+S S+ A K + +K L + +++ Q + L S K TL
Sbjct: 405 GLSVSRVGSAAQVKALKQ------VAGSLKLFLAQYREVAAFAQF--GSDLDASTKQTLV 456
Query: 509 VAKLLKDDFLQQNSYSP 525
+ L L+QN YSP
Sbjct: 457 RGERL-TQLLKQNQYSP 472
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 51 GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
G + LE I ++ V G+ V RTG + V +GPG+LG + D + P+
Sbjct: 98 GMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 152
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 41/317 (12%)
Query: 224 PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS----------QALSKYSNSDVIVYV 273
P+ TG + +D+L P G I G GKT ++ S S VYV
Sbjct: 147 PVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYV 206
Query: 274 GCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSE 333
G++ + +A++++ + MK + +VA T++ + + +T ++ E
Sbjct: 207 AVGQKRSTVAQLVQTLEQ---------HDAMKYSIIVAATASEAAPLQYLAPFTAASIGE 257
Query: 334 YFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERAGRV 390
+FRD G + ++ D S+ A A R++S L P YP YL +RL ERA +
Sbjct: 258 WFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRL---LERAAK- 313
Query: 391 KCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRKHFPSINW 448
L + GS++ + + GGD S + + + I Q+F L+ +L + P+IN
Sbjct: 314 --LSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIF--LEAELFYKGIRPAINV 369
Query: 449 LISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLE 508
+S S+ A K + +K L + +++ Q + L S K TL
Sbjct: 370 GLSVSRVGSAAQVKALKQ------VAGSLKLFLAQYREVAASAQF--GSDLDASTKQTLV 421
Query: 509 VAKLLKDDFLQQNSYSP 525
+ L L+QN YSP
Sbjct: 422 RGERLT-QLLKQNQYSP 437
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 51 GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
G + LE I ++ V G+ V RTG + V +GPG+LG + D + P+
Sbjct: 63 GMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPI 117
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 109/238 (45%), Gaps = 24/238 (10%)
Query: 224 PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT--VISQALSKYSNSDVIVYVGCGERGNE 281
PL TG + +D+L P G I G GKT I +++ + + +YV G++ +
Sbjct: 145 PLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSVAIDTIINQKDQNMICIYVAIGQKEST 204
Query: 282 MAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYN 341
+A V+ T+ G + T +V +++ P + Y G+ + EYF MG +
Sbjct: 205 VATVVE-----TLAKHGAPDY----TIVVTASASQPAPLLFLAPYAGVAMGEYFMIMGKH 255
Query: 342 VSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERAGRVKCLGNPDR 398
V ++ D S+ A A R++S L P YP YL +RL ERA + L +
Sbjct: 256 VLVVIDDLSKQAAAYRQLSLLLRRPPGREAYPGDIFYLHSRL---LERAAK---LSDAKG 309
Query: 399 EGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRKHFPSINWLISYSK 454
GS++ + V GD S + + + I Q+F D + + P+IN +S S+
Sbjct: 310 GGSLTALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVR--PAINAGLSVSR 365
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 49 LVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
++G + LE + I + +G+ GD V RTG+ + V +G ++G + + + +P+
Sbjct: 59 VMGMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPLGQPV 115
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 140/329 (42%), Gaps = 53/329 (16%)
Query: 218 KLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT--VISQALSKYSNSD------- 268
++ P+ TG + +DSL P G I G GKT I +++ +D
Sbjct: 121 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKK 180
Query: 269 -VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYT 327
+YV G++ + +A++++ + MK T +V+ T++ + + Y+
Sbjct: 181 LYCIYVAIGQKRSTVAQLVKRLTD---------ADAMKYTIVVSATASDAAPLQYLAPYS 231
Query: 328 GITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFY 384
G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 232 GCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---L 288
Query: 385 ERAGRVK-CLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRK 441
ERA ++ G GS++ + + GD S + + + I Q+F L+ +L +
Sbjct: 289 ERAAKMNDAFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETELFYKG 342
Query: 442 HFPSINWLISYSKY-----MRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGK 496
P+IN +S S+ RA+ E R +V Q DL Q +
Sbjct: 343 IRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYR-EVAAFAQFGSDLDAATQQL-- 399
Query: 497 ASLAESDKITLEVAKLLKDDFLQQNSYSP 525
L+ ++T + L+Q YSP
Sbjct: 400 --LSRGVRLT---------ELLKQGQYSP 417
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 140/329 (42%), Gaps = 53/329 (16%)
Query: 218 KLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT--VISQALSKYSNSD------- 268
++ P+ TG + +DSL P G I G GKT I +++ +D
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKK 198
Query: 269 -VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYT 327
+YV G++ + +A++++ + MK T +V+ T++ + + Y+
Sbjct: 199 LYCIYVAIGQKRSTVAQLVKRLTD---------ADAMKYTIVVSATASDAAPLQYLAPYS 249
Query: 328 GITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFY 384
G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 250 GCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---L 306
Query: 385 ERAGRVK-CLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRK 441
ERA ++ G GS++ + + GD S + + + I Q+F L+ +L +
Sbjct: 307 ERAAKMNDAFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETELFYKG 360
Query: 442 HFPSINWLISYSKY-----MRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGK 496
P+IN +S S+ RA+ E R +V Q DL Q +
Sbjct: 361 IRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYR-EVAAFAQFGSDLDAATQQL-- 417
Query: 497 ASLAESDKITLEVAKLLKDDFLQQNSYSP 525
L+ ++T + L+Q YSP
Sbjct: 418 --LSRGVRLT---------ELLKQGQYSP 435
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 140/329 (42%), Gaps = 53/329 (16%)
Query: 218 KLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT--VISQALSKYSNSD------- 268
++ P+ TG + +DSL P G I G GKT I +++ +D
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKK 198
Query: 269 -VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYT 327
+YV G++ + +A++++ + MK T +V+ T++ + + Y+
Sbjct: 199 LYCIYVAIGQKRSTVAQLVKRLTD---------ADAMKYTIVVSATASDAAPLQYLAPYS 249
Query: 328 GITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFY 384
G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 250 GCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---L 306
Query: 385 ERAGRVK-CLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRK 441
ERA ++ G GS++ + + GD S + + + I Q+F L+ +L +
Sbjct: 307 ERAAKMNDAFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETELFYKG 360
Query: 442 HFPSINWLISYSKY-----MRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGK 496
P+IN +S S+ RA+ E R +V Q DL Q +
Sbjct: 361 IRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYR-EVAAFAQFGSDLDAATQQL-- 417
Query: 497 ASLAESDKITLEVAKLLKDDFLQQNSYSP 525
L+ ++T + L+Q YSP
Sbjct: 418 --LSRGVRLT---------ELLKQGQYSP 435
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 140/329 (42%), Gaps = 53/329 (16%)
Query: 218 KLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT--VISQALSKYSNSD------- 268
++ P+ TG + +DSL P G I G GKT I +++ +D
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKK 198
Query: 269 -VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYT 327
+YV G++ + +A++++ + MK T +V+ T++ + + Y+
Sbjct: 199 LYCIYVAIGQKRSTVAQLVKRLTD---------ADAMKYTIVVSATASDAAPLQYLAPYS 249
Query: 328 GITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFY 384
G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 250 GCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---L 306
Query: 385 ERAGRVK-CLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRK 441
ERA ++ G GS++ + + GD S + + + I Q+F L+ +L +
Sbjct: 307 ERAAKMNDAFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETELFYKG 360
Query: 442 HFPSINWLISYSKY-----MRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGK 496
P+IN +S S+ RA+ E R +V Q DL Q +
Sbjct: 361 IRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYR-EVAAFAQFGSDLDAATQQL-- 417
Query: 497 ASLAESDKITLEVAKLLKDDFLQQNSYSP 525
L+ ++T + L+Q YSP
Sbjct: 418 --LSRGVRLT---------ELLKQGQYSP 435
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 116/253 (45%), Gaps = 34/253 (13%)
Query: 218 KLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT--VISQALSKYSNSD------- 268
++ P+ TG + +DSL P G I G GKT I +++ +D
Sbjct: 116 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKK 175
Query: 269 -VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYT 327
+YV G++ + +A++++ + MK T +V+ T++ + + Y+
Sbjct: 176 LYCIYVAIGQKRSTVAQLVKRLTD---------ADAMKYTIVVSATASDAAPLQYLAPYS 226
Query: 328 GITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFY 384
G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 227 GCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---L 283
Query: 385 ERAGRVK-CLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRK 441
ERA ++ G GS++ + + GD S + + + I Q+F L+ +L +
Sbjct: 284 ERAAKMNDAFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETELFYKG 337
Query: 442 HFPSINWLISYSK 454
P+IN +S S+
Sbjct: 338 IRPAINVGLSVSR 350
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 140/329 (42%), Gaps = 53/329 (16%)
Query: 218 KLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT--VISQALSKYSNSD------- 268
++ P+ TG + +DSL P G I G GKT I +++ +D
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKK 198
Query: 269 -VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYT 327
+YV G++ + +A++++ + MK T +V+ T++ + + Y+
Sbjct: 199 LYCIYVAIGQKRSTVAQLVKRLTD---------ADAMKYTIVVSATASDAAPLQYLAPYS 249
Query: 328 GITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFY 384
G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 250 GCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---L 306
Query: 385 ERAGRVK-CLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRK 441
ERA ++ G GS++ + + GD S + + + I Q+F L+ +L +
Sbjct: 307 ERAAKMNDSFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETELFYKG 360
Query: 442 HFPSINWLISYSKY-----MRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGK 496
P+IN +S S+ RA+ E R +V Q DL Q +
Sbjct: 361 IRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYR-EVAAFAQFGSDLDAATQQL-- 417
Query: 497 ASLAESDKITLEVAKLLKDDFLQQNSYSP 525
L+ ++T + L+Q YSP
Sbjct: 418 --LSRGVRLT---------ELLKQGQYSP 435
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 141/329 (42%), Gaps = 53/329 (16%)
Query: 218 KLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS--QALSKYSNSD------- 268
++ P+ TG + +DSL P G I G GKT I+ +++ +D
Sbjct: 182 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKK 241
Query: 269 -VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYT 327
+YV G++ + +A++++ + MK T +V+ T++ + + Y+
Sbjct: 242 LYCIYVAIGQKRSTVAQLVKRLTD---------ADAMKYTIVVSATASDAAPLQYLAPYS 292
Query: 328 GITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFY 384
G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 293 GCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---L 349
Query: 385 ERAGRVK-CLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRK 441
ERA ++ G GS++ + + GD S + + + I Q+F L+ +L +
Sbjct: 350 ERAAKMNDAFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETELFYKG 403
Query: 442 HFPSINWLISYSKY-----MRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGK 496
P+IN +S S+ RA+ E R +V Q DL Q +
Sbjct: 404 IRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYR-EVAAFAQFGSDLDAATQQL-- 460
Query: 497 ASLAESDKITLEVAKLLKDDFLQQNSYSP 525
L+ ++T + L+Q YSP
Sbjct: 461 --LSRGVRLT---------ELLKQGQYSP 478
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 140/329 (42%), Gaps = 53/329 (16%)
Query: 218 KLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT--VISQALSKYSNSD------- 268
++ P+ TG + +DSL P G I G GKT I +++ +D
Sbjct: 139 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKK 198
Query: 269 -VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYT 327
+YV G++ + +A++++ + MK T +V+ T++ + + Y+
Sbjct: 199 LYCIYVAIGQKRSTVAQLVKRLTD---------ADAMKYTIVVSATASDAAPLQYLAPYS 249
Query: 328 GITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFY 384
G ++ EYFRD G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 250 GCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---L 306
Query: 385 ERAGRVK-CLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRK 441
ERA ++ G GS++ + + GD S + + + I Q+F L+ +L +
Sbjct: 307 ERAAKMNDSFGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF--LETELFYKG 360
Query: 442 HFPSINWLISYSKY-----MRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGK 496
P+IN +S S+ RA+ E R +V Q DL Q +
Sbjct: 361 IRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYR-EVAAFAQFGSDLDAATQQL-- 417
Query: 497 ASLAESDKITLEVAKLLKDDFLQQNSYSP 525
L+ ++T + L+Q YSP
Sbjct: 418 --LSRGVRLT---------ELLKQGQYSP 435
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 24/238 (10%)
Query: 224 PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS-QALSKYSNSDVI-VYVGCGERGNE 281
PL TG + +DS+ P G I G GKT I+ + DVI +YV G++ +
Sbjct: 145 PLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQST 204
Query: 282 MAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYN 341
+A V+ + + T +V +++ P + Y G + EYF G +
Sbjct: 205 VAGVVETLRQ---------HDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKH 255
Query: 342 VSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERAGRVKCLGNPDR 398
++ D S+ A A RE+S L P YP YL +RL ERA + L +
Sbjct: 256 ALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRL---LERAAK---LSDEKG 309
Query: 399 EGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRKHFPSINWLISYSK 454
GS++ + + GD S + + + I Q+F L+ L P++N IS S+
Sbjct: 310 GGSLTALPFIETQAGDVSAYIPTNVISITDGQIF--LESDLFYSGVRPAVNVGISVSR 365
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 22/241 (9%)
Query: 220 PANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS--QALSKYSNSDVIVYVGCGE 277
P + PL TG + +DS P G I G GKT I+ +++ +YV G+
Sbjct: 154 PVDTPLQTGIKAIDSXIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQ 213
Query: 278 RGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRD 337
+ + +A ++ + G E TT+V +++ P + + + Y G EYF
Sbjct: 214 KKSAIARIIDKLRQY-----GAXEY----TTVVVASASDPASLQYIAPYAGCAXGEYFAY 264
Query: 338 MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERAGRVK-CL 393
G + ++ D S+ A A R++S P YP YL +RL ERA R+ L
Sbjct: 265 SGRDALVVYDDLSKHAVAYRQLSLLXRRPPGREAYPGDIFYLHSRL---LERAVRLNDKL 321
Query: 394 GNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYS 453
G GS++ + V D S + + + I L+ L P+IN +S S
Sbjct: 322 GG----GSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVS 377
Query: 454 K 454
+
Sbjct: 378 R 378
>pdb|1UM2|C Chain C, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
pdb|1UM2|D Chain D, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
Length = 21
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 265 SNSDVIVYVGCGERGNEMAE 284
SNSD I+YVG GERGNEMAE
Sbjct: 2 SNSDAIIYVGSGERGNEMAE 21
>pdb|3SG1|A Chain A, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|B Chain B, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|C Chain C, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|D Chain D, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
Length = 458
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 245 AIPGAFGCGKTVISQALSKYSNSDVIVYVGCG------ERGNEMAEVLRDFPELTIEVDG 298
A+PG G I Q L + V VG G E + A++ DFP + G
Sbjct: 136 ALPGGCAIGSRPIDQHLKGFEAMGAKVQVGNGFVEAYVEGELKGAKIYLDFPSV-----G 190
Query: 299 VTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSR 351
TE+IM TL T+ + AA+E I + L+ + MG V T R
Sbjct: 191 ATENIMSAATLAKGTTILENAAKEPEI---VDLANFLNAMGAKVRGAGTGTIR 240
>pdb|1PVO|A Chain A, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|B Chain B, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|C Chain C, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|D Chain D, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|E Chain E, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|F Chain F, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1XPR|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPU|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPO|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
Length = 419
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 36/228 (15%)
Query: 230 RVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK---YSNSDVIVYVGC-GERGNEMAEV 285
RVLD P G I GKT++ Q +++ Y++ D ++ V ER E+ E+
Sbjct: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219
Query: 286 LRDFPELTIEVDGVTESIMKRTTLVANTSNMP----VAAREASIYTGITLSEYFRDMGYN 341
R + + +VA+T + P V E I L E+ +D
Sbjct: 220 QR----------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD---- 259
Query: 342 VSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401
V ++ DS +R A A + +PA SG G + + N + GS
Sbjct: 260 VIILLDSITRLARAYNTV------VPA-SGKVLTGGVDANALHRPKRFFGAARNVEEGGS 312
Query: 402 VSIVG-AVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINW 448
++I+ A+ G + + G + L +K+A+++ FP+I++
Sbjct: 313 LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360
>pdb|2HT1|A Chain A, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
pdb|2HT1|B Chain B, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
Length = 433
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 36/228 (15%)
Query: 230 RVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK---YSNSDVIVYVGC-GERGNEMAEV 285
RVLD P G I GKT++ Q +++ Y++ D ++ V ER E+ E+
Sbjct: 182 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 241
Query: 286 LRDFPELTIEVDGVTESIMKRTTLVANTSNMP----VAAREASIYTGITLSEYFRDMGYN 341
R + + +VA+T + P V E I L E+ +D
Sbjct: 242 QR----------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD---- 281
Query: 342 VSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401
V ++ DS +R A A + +PA SG G + + N + GS
Sbjct: 282 VIILLDSITRLARAYNTV------VPA-SGKVLTGGVDANALHRPKRFFGAARNVEEGGS 334
Query: 402 VSIVG-AVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINW 448
++I+ A+ G + + G + L +K+A+++ FP+I++
Sbjct: 335 LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 382
>pdb|1MWK|A Chain A, Parm From Plasmid R1 Apo Form
pdb|1MWK|B Chain B, Parm From Plasmid R1 Apo Form
pdb|1MWM|A Chain A, Parm From Plasmid R1 Adp Form
pdb|1MWM|B Chain B, Parm From Plasmid R1 Adp Form
pdb|2QU4|A Chain A, Model For Bacterial Parm Filament
pdb|2ZGY|A Chain A, Parm With Gdp
pdb|2ZGY|B Chain B, Parm With Gdp
pdb|2ZGZ|A Chain A, Parm With Gmppnp
pdb|2ZGZ|B Chain B, Parm With Gmppnp
pdb|2ZHC|A Chain A, Parm Filament
pdb|3IKU|A Chain A, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|B Chain B, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|C Chain C, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|D Chain D, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|E Chain E, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|F Chain F, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|G Chain G, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|H Chain H, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|I Chain I, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|J Chain J, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|K Chain K, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|L Chain L, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKY|A Chain A, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|B Chain B, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|C Chain C, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|D Chain D, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|E Chain E, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|F Chain F, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|G Chain G, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|H Chain H, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|I Chain I, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|J Chain J, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|K Chain K, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|L Chain L, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|4A6J|A Chain A, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|B Chain B, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|C Chain C, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|D Chain D, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|E Chain E, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|F Chain F, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|G Chain G, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|H Chain H, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|I Chain I, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|J Chain J, Structural Model Of Parm Filament Based On Cryoem Map
Length = 320
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 28/124 (22%)
Query: 217 EKLPANYPLLTGQRVLDSLFPCVLGGTT--------------AIPGAFGCGKTVISQAL- 261
E +PA Y +L LDSL LGGTT I G G ++++ A+
Sbjct: 148 ESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVK 207
Query: 262 ----------SKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVA 311
S Y D+I++ + N + + + D +++I + + E++ K V
Sbjct: 208 DALSLARTKGSSYLADDIIIH---RKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVL 264
Query: 312 NTSN 315
NT N
Sbjct: 265 NTLN 268
>pdb|3PG5|A Chain A, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|B Chain B, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|C Chain C, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|D Chain D, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
Length = 361
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 251 GCGKTVISQALSKYS--NSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTT 308
G GKT +S ++ Y ++YV C + N L + +I +DG+ + + +R +
Sbjct: 12 GVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLXLTEEQTESIYLDGLNDEVAERNS 71
Query: 309 LVANTSNMPVAARE 322
L + V RE
Sbjct: 72 LAKTVYAIFVPLRE 85
>pdb|3R38|A Chain A, 2.23 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase (Mura)
From Listeria Monocytogenes Egd-E
Length = 454
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 245 AIPGAFGCGKTVISQALSKYSNSDVIVYVGCG--ERGNEM---AEVLRDFPELTIEVDGV 299
A+PG G + L + +V + G E E A+V DFP + G
Sbjct: 136 ALPGGCAIGSRPVDLHLKGFEAMGAVVKIENGYIEATAEKLVGAKVYLDFPSV-----GA 190
Query: 300 TESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNV 342
T++IM TL T+ + ARE I + L+ + MG V
Sbjct: 191 TQNIMMAATLAEGTTVIENVAREPEI---VDLANFLNQMGARV 230
>pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D-
Glutamate (Murd) Ligase From Streptococcus Agalactiae To
1.5a
Length = 451
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 259 QALSKYSNSDVIVYVGCGERGNEMAEVLRDFPEL 292
+ALS + N+ VI+ G +RGNE E++ D L
Sbjct: 339 KALSGFDNTKVILIAGGLDRGNEFDELIPDITGL 372
>pdb|3G2O|A Chain A, Crystal Structure Of The Glycopeptide N-methyltransferase
Mtfa Complexed With (s)-adenosyl-l-methionine (sam)
pdb|3G2O|B Chain B, Crystal Structure Of The Glycopeptide N-methyltransferase
Mtfa Complexed With (s)-adenosyl-l-methionine (sam)
pdb|3G2P|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With (S)-Adenosyl-L-Homocysteine (Sah)
pdb|3G2P|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With (S)-Adenosyl-L-Homocysteine (Sah)
pdb|3G2Q|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With Sinefungin
pdb|3G2Q|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With Sinefungin
Length = 299
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 36/173 (20%)
Query: 263 KYSNSDVIVYVGCGERGNEMAEVLRDF---------PELTIEVDGVTESIMKRTTLVANT 313
+ ++DV++ GERG VL DF +L + DG +E+ T
Sbjct: 30 RTPHADVLL-ASVGERG-----VLCDFYDEGAADTYRDLIQDADGTSEA------REFAT 77
Query: 314 SNMPVAAREASIYTGI-TLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAD--- 369
PV+ + G+ L+ F D+G+ V+ + STS A A R+ RLAE PAD
Sbjct: 78 RTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLA-AFRK---RLAEAPADVRD 133
Query: 370 ------SGYPAY-LGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDF 415
A+ L R + +G + L DR G + V PGG F
Sbjct: 134 RCTLVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKF 186
>pdb|2HUO|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase In
Complex With Substrate
pdb|3BXD|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase
(Re-Refined)
Length = 289
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 399 EGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRA 458
+ SV + D DP S LG+ Q GL+ L H + ++ ++K+
Sbjct: 155 QASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFNKFSLP 214
Query: 459 LDDFYDKNHPEFVPLRT--KVKEIL-QEEEDLSEIVQLVGKASL 499
+ FY F P T +++ Q++ D+ VQ K L
Sbjct: 215 SEAFYMIRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQEFNKFDL 258
>pdb|4A62|A Chain A, Parm From R1 Plasmid In Complex With Peptide From C-
Terminus Of Parr
pdb|4A62|B Chain B, Parm From R1 Plasmid In Complex With Peptide From C-
Terminus Of Parr
Length = 320
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 217 EKLPANYPLLTGQRVLDSLFPCVLGGTT--------------AIPGAFGCGKTVISQAL- 261
E +PA Y +L DSL LGGTT I G G ++++ A+
Sbjct: 148 ESIPAGYEVLQELDEADSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVK 207
Query: 262 ----------SKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVA 311
S Y D+I++ + N + + + D +++I + + E++ K V
Sbjct: 208 DALSLARTKGSSYLADDIIIH---RKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVL 264
Query: 312 NTSN 315
NT N
Sbjct: 265 NTLN 268
>pdb|4A61|A Chain A, Parm From Plasmid R1 In Complex With Amppnp
Length = 326
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Query: 217 EKLPANYPLLTGQRVLDSLFPCVLGGTT--------------AIPGAFGCGKTVISQAL- 261
E +PA Y +L DSL LGGTT I G G ++++ A+
Sbjct: 154 ESIPAGYEVLQELDERDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVK 213
Query: 262 ----------SKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVA 311
S Y D+I++ + N + + + D +++I + + E++ K V
Sbjct: 214 DALSLARTKGSSYLADDIIIH---RKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVL 270
Query: 312 NTSN 315
NT N
Sbjct: 271 NTLN 274
>pdb|3A4Z|A Chain A, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|B Chain B, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|C Chain C, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|D Chain D, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|E Chain E, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A50|A Chain A, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|B Chain B, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|C Chain C, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|D Chain D, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|E Chain E, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A51|A Chain A, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|B Chain B, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|C Chain C, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|D Chain D, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|E Chain E, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
Length = 411
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 282 MAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPV 318
+ + D PEL + V G+ E + +R+TLV S MPV
Sbjct: 361 IGRLFADRPELALAV-GLDELVYRRSTLVRGLSRMPV 396
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 355 ALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDRE----GSVSIVGAVSP 410
AL +ISG L + + G+ AR R+G +CLGNP E ++ ++GA
Sbjct: 2 ALADISGYLDVLDSVRGFSYLENAREVL---RSGEARCLGNPRSEPEYVKALYVIGASRI 58
Query: 411 PGGD 414
P GD
Sbjct: 59 PVGD 62
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 355 ALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDRE----GSVSIVGAVSP 410
AL +ISG L + + G+ AR R+G +CLGNP E ++ ++GA
Sbjct: 2 ALADISGYLDVLDSVRGFSYLENAREVL---RSGEARCLGNPRSEPEYVKALYVIGASRI 58
Query: 411 PGGD 414
P GD
Sbjct: 59 PVGD 62
>pdb|2IBN|B Chain B, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
Length = 240
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 399 EGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRA 458
+ SV + D DP S LG Q GLD+ L H + ++K+
Sbjct: 110 QASVVFCDSTFQDNPDLQDPRYSTELGXYQPHCGLDRVLXSWGHDEYXYQVXKFNKFSLP 169
Query: 459 LDDFYDKNHPEFVPLRT-KVKEILQEEEDLSEI 490
+ FY F P T + + L ++DL+ +
Sbjct: 170 PEAFYXIRFHSFYPWHTGRDYQQLCSQQDLAXL 202
>pdb|3G2M|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa
pdb|3G2M|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa
Length = 299
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 335 FRDMGYNVSMMADSTSRWAEALREISGRLAEMPAD---------SGYPAY-LGARLASFY 384
F D+G+ V+ + STS A A R+ RLAE PAD A+ L R +
Sbjct: 100 FLDLGWEVTALELSTSVLA-AFRK---RLAEAPADVRDRCTLVQGDXSAFALDKRFGTVV 155
Query: 385 ERAGRVKCLGNPDREGSVSIVGAVSPPGGDF 415
+G + L DR G + V PGG F
Sbjct: 156 ISSGSINELDEADRRGLYASVREHLEPGGKF 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,086,999
Number of Sequences: 62578
Number of extensions: 773102
Number of successful extensions: 2312
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1998
Number of HSP's gapped (non-prelim): 143
length of query: 615
length of database: 14,973,337
effective HSP length: 105
effective length of query: 510
effective length of database: 8,402,647
effective search space: 4285349970
effective search space used: 4285349970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)