Query psy13480
Match_columns 615
No_of_seqs 263 out of 1720
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 20:27:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1352|consensus 100.0 3E-185 6E-190 1428.3 36.0 606 9-615 13-618 (618)
2 TIGR01042 V-ATPase_V1_A V-type 100.0 9E-180 2E-184 1467.0 58.0 590 16-606 1-590 (591)
3 COG1155 NtpA Archaeal/vacuolar 100.0 7E-179 1E-183 1424.3 46.6 584 17-614 2-587 (588)
4 TIGR01043 ATP_syn_A_arch ATP s 100.0 7E-175 2E-179 1433.9 59.2 577 17-611 1-578 (578)
5 PRK04192 V-type ATP synthase s 100.0 4E-173 1E-177 1421.4 59.5 580 16-614 3-584 (586)
6 PRK14698 V-type ATP synthase s 100.0 3E-158 7E-163 1376.5 57.0 582 15-612 2-1014(1017)
7 cd01134 V_A-ATPase_A V/A-type 100.0 4E-131 8E-136 1034.1 32.1 369 84-455 1-369 (369)
8 PRK04196 V-type ATP synthase s 100.0 1E-112 3E-117 929.2 46.3 420 15-544 2-434 (460)
9 TIGR01041 ATP_syn_B_arch ATP s 100.0 8E-112 2E-116 921.6 45.4 419 16-544 1-432 (458)
10 PRK09280 F0F1 ATP synthase sub 100.0 7E-110 2E-114 903.9 43.4 415 17-544 3-435 (463)
11 COG1157 FliI Flagellar biosynt 100.0 7E-110 1E-114 880.0 40.4 418 7-543 15-439 (441)
12 TIGR00962 atpA proton transloc 100.0 4E-109 9E-114 908.6 47.5 481 5-610 15-499 (501)
13 PRK09281 F0F1 ATP synthase sub 100.0 6E-109 1E-113 907.4 48.2 481 5-610 16-500 (502)
14 TIGR03324 alt_F1F0_F1_al alter 100.0 9E-109 2E-113 899.7 45.6 462 5-585 16-481 (497)
15 PRK06936 type III secretion sy 100.0 9E-109 2E-113 891.1 44.0 416 9-543 16-438 (439)
16 PRK13343 F0F1 ATP synthase sub 100.0 9E-108 2E-112 894.6 47.1 481 5-610 16-500 (502)
17 PRK12597 F0F1 ATP synthase sub 100.0 1E-107 3E-112 888.0 42.8 416 16-544 2-434 (461)
18 TIGR01039 atpD ATP synthase, F 100.0 1E-106 2E-111 877.2 42.2 414 17-544 2-434 (461)
19 PRK08972 fliI flagellum-specif 100.0 1E-105 2E-110 865.8 45.3 416 12-544 21-441 (444)
20 CHL00060 atpB ATP synthase CF1 100.0 1E-105 2E-110 874.5 43.7 424 14-544 13-459 (494)
21 CHL00059 atpA ATP synthase CF1 100.0 3E-105 6E-110 869.3 47.1 472 14-610 4-479 (485)
22 TIGR03305 alt_F1F0_F1_bet alte 100.0 1E-105 3E-110 869.0 43.7 413 18-544 1-429 (449)
23 TIGR01040 V-ATPase_V1_B V-type 100.0 8E-105 2E-109 860.1 41.2 419 16-541 1-442 (466)
24 PRK08927 fliI flagellum-specif 100.0 5E-104 1E-108 855.0 43.5 422 8-544 9-437 (442)
25 PRK09099 type III secretion sy 100.0 7E-104 2E-108 855.8 44.4 417 8-543 16-439 (441)
26 PRK06820 type III secretion sy 100.0 5E-102 1E-106 840.3 44.7 411 13-543 26-439 (440)
27 PRK05688 fliI flagellum-specif 100.0 1E-101 3E-106 837.7 44.9 420 8-544 19-447 (451)
28 PRK07165 F0F1 ATP synthase sub 100.0 4E-101 9E-106 839.4 47.6 466 18-606 3-473 (507)
29 TIGR03496 FliI_clade1 flagella 100.0 1E-101 3E-106 834.2 42.7 405 18-539 1-411 (411)
30 PRK07594 type III secretion sy 100.0 3E-101 7E-106 832.7 44.2 417 7-543 12-431 (433)
31 PRK02118 V-type ATP synthase s 100.0 4E-101 8E-106 830.0 43.4 405 15-544 3-411 (436)
32 PRK08472 fliI flagellum-specif 100.0 9E-101 2E-105 829.4 42.5 417 8-543 10-433 (434)
33 TIGR03498 FliI_clade3 flagella 100.0 2E-100 4E-105 825.5 42.9 410 18-542 1-417 (418)
34 TIGR03497 FliI_clade2 flagella 100.0 5E-100 1E-104 822.1 42.8 406 18-542 1-412 (413)
35 PRK08149 ATP synthase SpaL; Va 100.0 1.6E-99 3E-104 818.6 43.1 414 14-543 4-427 (428)
36 PRK05922 type III secretion sy 100.0 2.6E-99 6E-104 817.5 43.4 416 8-544 11-432 (434)
37 TIGR02546 III_secr_ATP type II 100.0 5.8E-99 1E-103 817.1 44.1 413 14-543 3-421 (422)
38 PRK07960 fliI flagellum-specif 100.0 1.4E-98 3E-103 812.4 43.1 417 10-543 21-453 (455)
39 PTZ00185 ATPase alpha subunit; 100.0 2.3E-98 5E-103 813.4 43.1 418 14-544 37-472 (574)
40 TIGR01026 fliI_yscN ATPase Fli 100.0 9.9E-98 2E-102 809.9 43.9 421 5-543 12-439 (440)
41 PRK07196 fliI flagellum-specif 100.0 8.2E-97 2E-101 798.7 42.3 422 4-543 5-432 (434)
42 PRK06002 fliI flagellum-specif 100.0 4.4E-95 1E-99 786.0 42.1 422 7-546 16-444 (450)
43 PRK07721 fliI flagellum-specif 100.0 8.9E-93 1.9E-97 770.8 42.0 418 8-544 10-435 (438)
44 PRK06315 type III secretion sy 100.0 4.5E-92 9.8E-97 763.2 40.3 419 9-543 16-441 (442)
45 PRK06793 fliI flagellum-specif 100.0 1E-90 2.2E-95 750.9 41.9 412 12-542 17-431 (432)
46 COG0056 AtpA F0F1-type ATP syn 100.0 1.7E-86 3.6E-91 702.9 36.8 482 6-611 17-501 (504)
47 cd01135 V_A-ATPase_B V/A-type 100.0 1.3E-85 2.9E-90 673.7 25.3 235 207-455 34-276 (276)
48 cd01133 F1-ATPase_beta F1 ATP 100.0 1.8E-85 3.9E-90 673.7 25.6 236 206-457 33-273 (274)
49 cd01132 F1_ATPase_alpha F1 ATP 100.0 2.4E-85 5.2E-90 671.8 26.2 239 206-456 33-274 (274)
50 cd01136 ATPase_flagellum-secre 100.0 1.6E-83 3.6E-88 674.5 29.7 291 206-520 33-326 (326)
51 COG0055 AtpD F0F1-type ATP syn 100.0 2.6E-80 5.7E-85 644.2 30.4 418 16-544 2-438 (468)
52 COG1156 NtpB Archaeal/vacuolar 100.0 5.2E-77 1.1E-81 624.4 29.7 420 14-544 4-437 (463)
53 PF00006 ATP-synt_ab: ATP synt 100.0 3.3E-72 7.1E-77 559.5 17.4 215 227-453 1-215 (215)
54 KOG1351|consensus 100.0 3.9E-70 8.4E-75 552.9 28.3 423 12-541 19-464 (489)
55 KOG1350|consensus 100.0 1.1E-68 2.4E-73 546.7 21.8 424 14-544 49-488 (521)
56 PRK12608 transcription termina 100.0 1.5E-65 3.3E-70 544.3 23.1 301 69-494 56-362 (380)
57 PRK09376 rho transcription ter 100.0 1.6E-59 3.4E-64 499.6 23.8 252 214-494 140-398 (416)
58 PRK12678 transcription termina 100.0 7E-59 1.5E-63 509.1 23.0 243 214-494 388-645 (672)
59 TIGR00767 rho transcription te 100.0 6.5E-54 1.4E-58 458.3 21.3 242 224-494 151-397 (415)
60 cd01128 rho_factor Transcripti 100.0 6.1E-51 1.3E-55 414.9 21.8 237 229-494 4-245 (249)
61 KOG1353|consensus 100.0 2.1E-35 4.5E-40 295.0 12.7 309 13-537 17-335 (340)
62 COG1158 Rho Transcription term 100.0 1.7E-33 3.7E-38 290.9 15.2 236 230-494 162-402 (422)
63 COG1155 NtpA Archaeal/vacuolar 99.4 5.9E-13 1.3E-17 145.5 9.0 237 310-546 287-524 (588)
64 PF00306 ATP-synt_ab_C: ATP sy 99.4 9.3E-12 2E-16 112.8 14.0 109 471-615 1-113 (113)
65 cd01120 RecA-like_NTPases RecA 99.1 1.2E-09 2.6E-14 100.5 14.5 158 244-435 2-165 (165)
66 PF02874 ATP-synt_ab_N: ATP sy 98.9 2.5E-09 5.5E-14 88.1 7.4 63 20-82 1-69 (69)
67 smart00382 AAA ATPases associa 97.7 0.00014 3E-09 63.8 8.3 97 240-361 1-99 (148)
68 cd01394 radB RadB. The archaea 97.7 0.00018 3.8E-09 71.5 8.8 113 225-355 1-118 (218)
69 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00038 8.3E-09 69.5 10.0 116 225-353 1-128 (235)
70 TIGR02236 recomb_radA DNA repa 97.6 0.00017 3.7E-09 75.8 7.7 116 224-352 76-204 (310)
71 PF06745 KaiC: KaiC; InterPro 97.5 0.00013 2.8E-09 72.9 6.1 177 226-436 2-186 (226)
72 COG0467 RAD55 RecA-superfamily 97.4 0.00086 1.9E-08 68.8 10.7 126 223-353 3-137 (260)
73 PLN03187 meiotic recombination 97.4 0.00055 1.2E-08 73.8 8.8 117 222-352 105-233 (344)
74 PRK06067 flagellar accessory p 97.3 0.0013 2.9E-08 66.2 10.5 68 222-289 4-75 (234)
75 TIGR02238 recomb_DMC1 meiotic 97.3 0.00099 2.1E-08 71.0 9.3 117 222-352 75-203 (313)
76 cd01393 recA_like RecA is a b 97.3 0.0014 3E-08 65.2 9.5 53 225-277 1-63 (226)
77 PRK09302 circadian clock prote 97.2 0.0034 7.5E-08 70.7 13.2 178 221-437 251-436 (509)
78 TIGR02237 recomb_radB DNA repa 97.0 0.0046 9.9E-08 60.9 10.2 101 238-355 9-112 (209)
79 PRK04301 radA DNA repair and r 97.0 0.0029 6.3E-08 67.1 9.0 116 223-352 82-210 (317)
80 PRK04328 hypothetical protein; 97.0 0.0027 5.9E-08 65.2 8.5 66 224-289 4-73 (249)
81 PRK09361 radB DNA repair and r 97.0 0.0034 7.3E-08 62.7 8.9 55 222-276 2-60 (225)
82 TIGR02012 tigrfam_recA protein 96.9 0.0014 3E-08 70.2 6.2 119 223-365 34-157 (321)
83 PTZ00035 Rad51 protein; Provis 96.9 0.0025 5.3E-08 68.6 8.1 117 222-352 97-225 (337)
84 TIGR00416 sms DNA repair prote 96.9 0.0066 1.4E-07 67.9 11.2 57 222-278 73-133 (454)
85 PLN03186 DNA repair protein RA 96.9 0.0027 5.9E-08 68.5 7.9 117 223-353 103-231 (342)
86 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0038 8.3E-08 64.5 8.7 56 225-280 4-77 (259)
87 PRK09354 recA recombinase A; P 96.8 0.002 4.4E-08 69.6 6.0 120 222-365 38-162 (349)
88 TIGR02239 recomb_RAD51 DNA rep 96.7 0.0036 7.8E-08 66.8 7.5 116 223-352 76-203 (316)
89 cd00983 recA RecA is a bacter 96.7 0.002 4.2E-08 69.1 5.0 118 222-363 33-155 (325)
90 cd01121 Sms Sms (bacterial rad 96.7 0.018 3.8E-07 63.0 12.4 56 222-277 61-120 (372)
91 COG2256 MGS1 ATPase related to 96.5 0.0047 1E-07 67.5 6.6 75 243-360 50-124 (436)
92 PRK08533 flagellar accessory p 96.5 0.029 6.3E-07 57.1 12.1 52 238-289 21-74 (230)
93 TIGR02655 circ_KaiC circadian 96.5 0.023 5E-07 63.9 12.1 191 220-451 240-440 (484)
94 PF05496 RuvB_N: Holliday junc 96.4 0.006 1.3E-07 62.4 5.9 68 244-360 53-121 (233)
95 TIGR03880 KaiC_arch_3 KaiC dom 96.3 0.015 3.2E-07 58.2 8.3 62 228-289 1-66 (224)
96 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.0038 8.2E-08 63.4 4.1 65 225-289 3-71 (237)
97 PRK11823 DNA repair protein Ra 96.2 0.037 8E-07 61.8 11.6 61 222-282 59-123 (446)
98 PRK09519 recA DNA recombinatio 96.1 0.0086 1.9E-07 70.8 6.2 117 223-363 39-160 (790)
99 COG1124 DppF ABC-type dipeptid 96.0 0.0035 7.6E-08 64.5 2.2 35 234-268 26-60 (252)
100 TIGR03881 KaiC_arch_4 KaiC dom 96.0 0.0076 1.6E-07 60.3 4.5 64 225-288 2-69 (229)
101 PF08423 Rad51: Rad51; InterP 95.9 0.028 6E-07 58.2 8.1 119 223-355 18-148 (256)
102 COG1116 TauB ABC-type nitrate/ 95.7 0.0061 1.3E-07 62.9 2.4 35 234-268 22-56 (248)
103 cd00544 CobU Adenosylcobinamid 95.5 0.057 1.2E-06 52.7 8.3 87 244-357 2-90 (169)
104 PF05729 NACHT: NACHT domain 95.4 0.014 3.1E-07 53.9 3.7 39 243-281 2-48 (166)
105 COG2874 FlaH Predicted ATPases 95.4 0.12 2.6E-06 52.7 10.2 159 240-436 27-191 (235)
106 COG3842 PotA ABC-type spermidi 95.4 0.0088 1.9E-07 64.8 2.5 40 229-268 18-58 (352)
107 cd00009 AAA The AAA+ (ATPases 95.4 0.071 1.5E-06 47.1 7.8 38 240-278 18-58 (151)
108 cd03222 ABC_RNaseL_inhibitor T 95.3 0.012 2.6E-07 57.7 2.9 37 230-266 14-50 (177)
109 TIGR02655 circ_KaiC circadian 95.3 0.016 3.5E-07 65.2 4.2 66 224-289 2-72 (484)
110 COG4619 ABC-type uncharacteriz 95.2 0.014 3E-07 57.6 3.0 34 235-268 23-56 (223)
111 PRK13342 recombination factor 95.2 0.048 1E-06 60.1 7.6 48 242-289 37-84 (413)
112 TIGR01166 cbiO cobalt transpor 95.2 0.011 2.4E-07 57.5 2.3 32 235-266 12-43 (190)
113 COG0563 Adk Adenylate kinase a 95.2 0.018 3.8E-07 56.7 3.8 117 243-387 2-124 (178)
114 COG1136 SalX ABC-type antimicr 95.1 0.011 2.5E-07 60.3 2.2 36 233-268 23-58 (226)
115 cd03292 ABC_FtsE_transporter F 95.0 0.014 3E-07 57.6 2.3 35 233-267 19-53 (214)
116 PRK05800 cobU adenosylcobinami 95.0 0.11 2.5E-06 50.5 8.6 37 243-280 3-39 (170)
117 cd03258 ABC_MetN_methionine_tr 94.9 0.015 3.2E-07 58.4 2.3 32 235-266 25-56 (233)
118 PF13401 AAA_22: AAA domain; P 94.9 0.05 1.1E-06 48.9 5.5 48 240-289 3-58 (131)
119 PRK09302 circadian clock prote 94.9 0.019 4.1E-07 64.8 3.3 67 223-289 11-82 (509)
120 cd03229 ABC_Class3 This class 94.9 0.016 3.5E-07 56.0 2.3 32 235-266 20-51 (178)
121 TIGR02211 LolD_lipo_ex lipopro 94.9 0.016 3.4E-07 57.6 2.3 32 234-265 24-55 (221)
122 TIGR02315 ABC_phnC phosphonate 94.9 0.016 3.4E-07 58.4 2.3 32 234-265 21-52 (243)
123 cd03235 ABC_Metallic_Cations A 94.8 0.016 3.5E-07 57.2 2.3 31 235-265 19-49 (213)
124 cd03226 ABC_cobalt_CbiO_domain 94.8 0.017 3.6E-07 56.9 2.3 31 235-265 20-50 (205)
125 cd03225 ABC_cobalt_CbiO_domain 94.8 0.017 3.8E-07 56.9 2.3 33 233-265 19-51 (211)
126 cd03256 ABC_PhnC_transporter A 94.8 0.017 3.7E-07 58.0 2.3 32 234-265 20-51 (241)
127 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.7 0.018 3.9E-07 57.1 2.3 31 235-265 24-54 (218)
128 cd03224 ABC_TM1139_LivF_branch 94.7 0.017 3.7E-07 57.3 2.2 31 234-264 19-49 (222)
129 cd03254 ABCC_Glucan_exporter_l 94.7 0.018 4E-07 57.4 2.4 33 233-265 21-53 (229)
130 TIGR00960 3a0501s02 Type II (G 94.7 0.019 4.1E-07 56.9 2.3 32 234-265 22-53 (216)
131 cd03262 ABC_HisP_GlnQ_permease 94.7 0.02 4.3E-07 56.5 2.4 32 234-265 19-50 (213)
132 cd03265 ABC_DrrA DrrA is the A 94.6 0.02 4.3E-07 57.0 2.4 34 233-266 18-51 (220)
133 cd03257 ABC_NikE_OppD_transpor 94.6 0.02 4.3E-07 57.0 2.4 33 233-265 23-55 (228)
134 cd03230 ABC_DR_subfamily_A Thi 94.6 0.02 4.2E-07 55.2 2.3 32 235-266 20-51 (173)
135 cd03115 SRP The signal recogni 94.6 0.29 6.2E-06 46.8 10.2 45 244-288 3-49 (173)
136 TIGR03608 L_ocin_972_ABC putat 94.6 0.02 4.3E-07 56.2 2.3 33 233-265 16-48 (206)
137 cd03269 ABC_putative_ATPase Th 94.6 0.021 4.6E-07 56.3 2.4 31 234-264 19-49 (210)
138 TIGR02673 FtsE cell division A 94.6 0.021 4.5E-07 56.4 2.3 31 235-265 22-52 (214)
139 cd03259 ABC_Carb_Solutes_like 94.6 0.021 4.5E-07 56.5 2.3 31 235-265 20-50 (213)
140 cd03215 ABC_Carb_Monos_II This 94.6 0.021 4.5E-07 55.4 2.2 33 234-266 19-51 (182)
141 TIGR03410 urea_trans_UrtE urea 94.5 0.021 4.6E-07 57.1 2.4 33 233-265 18-50 (230)
142 PRK13540 cytochrome c biogenes 94.5 0.022 4.7E-07 56.0 2.4 33 233-265 19-51 (200)
143 TIGR03864 PQQ_ABC_ATP ABC tran 94.5 0.021 4.5E-07 57.5 2.3 31 235-265 21-51 (236)
144 PRK11124 artP arginine transpo 94.5 0.022 4.7E-07 57.5 2.4 31 235-265 22-52 (242)
145 PF00005 ABC_tran: ABC transpo 94.5 0.015 3.3E-07 53.0 1.1 32 236-267 6-37 (137)
146 cd03296 ABC_CysA_sulfate_impor 94.5 0.021 4.6E-07 57.6 2.3 32 234-265 21-52 (239)
147 cd03238 ABC_UvrA The excision 94.5 0.018 3.9E-07 56.4 1.7 28 235-262 15-42 (176)
148 cd03219 ABC_Mj1267_LivG_branch 94.5 0.021 4.5E-07 57.3 2.2 31 235-265 20-50 (236)
149 COG3839 MalK ABC-type sugar tr 94.5 0.018 3.9E-07 62.1 1.9 35 233-267 21-55 (338)
150 cd03216 ABC_Carb_Monos_I This 94.5 0.022 4.8E-07 54.5 2.3 33 235-267 20-52 (163)
151 cd00820 PEPCK_HprK Phosphoenol 94.5 0.018 4E-07 52.3 1.6 28 235-262 9-36 (107)
152 cd03218 ABC_YhbG The ABC trans 94.5 0.022 4.8E-07 56.9 2.4 31 235-265 20-50 (232)
153 cd03298 ABC_ThiQ_thiamine_tran 94.5 0.025 5.5E-07 55.8 2.6 33 233-265 16-48 (211)
154 cd03261 ABC_Org_Solvent_Resist 94.4 0.023 4.9E-07 57.2 2.3 33 233-265 18-50 (235)
155 COG3638 ABC-type phosphate/pho 94.4 0.041 9E-07 56.7 4.2 56 233-288 22-82 (258)
156 cd03245 ABCC_bacteriocin_expor 94.4 0.023 4.9E-07 56.4 2.3 32 234-265 23-54 (220)
157 cd03260 ABC_PstB_phosphate_tra 94.4 0.019 4.2E-07 57.3 1.8 32 234-265 19-50 (227)
158 PRK13539 cytochrome c biogenes 94.4 0.023 5.1E-07 56.2 2.4 33 233-265 20-52 (207)
159 cd03295 ABC_OpuCA_Osmoprotecti 94.4 0.023 5E-07 57.5 2.3 31 235-265 21-51 (242)
160 cd03250 ABCC_MRP_domain1 Domai 94.4 0.024 5.3E-07 55.7 2.3 33 234-266 24-56 (204)
161 cd03247 ABCC_cytochrome_bd The 94.4 0.025 5.4E-07 54.6 2.3 34 233-266 20-53 (178)
162 cd03293 ABC_NrtD_SsuB_transpor 94.4 0.024 5.1E-07 56.5 2.2 31 235-265 24-54 (220)
163 PRK14255 phosphate ABC transpo 94.3 0.021 4.5E-07 58.1 1.8 30 235-264 25-54 (252)
164 COG1120 FepC ABC-type cobalami 94.3 0.021 4.6E-07 59.4 1.8 32 233-264 20-51 (258)
165 PRK14247 phosphate ABC transpo 94.3 0.022 4.8E-07 57.8 1.9 33 233-265 21-53 (250)
166 PRK14974 cell division protein 94.3 0.11 2.5E-06 56.0 7.4 38 239-276 138-177 (336)
167 PRK11144 modC molybdate transp 94.3 0.028 6.1E-07 60.6 2.8 36 232-267 15-50 (352)
168 cd03268 ABC_BcrA_bacitracin_re 94.3 0.026 5.5E-07 55.6 2.3 32 234-265 19-50 (208)
169 cd01122 GP4d_helicase GP4d_hel 94.3 0.05 1.1E-06 55.7 4.5 66 222-287 10-79 (271)
170 COG1126 GlnQ ABC-type polar am 94.3 0.023 4.9E-07 57.9 1.9 39 236-274 23-63 (240)
171 PF13173 AAA_14: AAA domain 94.3 0.07 1.5E-06 48.9 4.9 24 241-264 2-25 (128)
172 cd03214 ABC_Iron-Siderophores_ 94.3 0.027 5.9E-07 54.5 2.3 34 233-266 17-50 (180)
173 PF13207 AAA_17: AAA domain; P 94.3 0.022 4.7E-07 50.8 1.5 23 243-265 1-23 (121)
174 PRK14240 phosphate transporter 94.2 0.023 4.9E-07 57.7 1.8 33 232-264 20-52 (250)
175 cd03266 ABC_NatA_sodium_export 94.2 0.027 5.8E-07 55.8 2.3 30 235-264 25-54 (218)
176 PRK13541 cytochrome c biogenes 94.2 0.03 6.5E-07 54.8 2.6 35 231-265 16-50 (195)
177 PRK10584 putative ABC transpor 94.2 0.027 6E-07 56.2 2.4 34 233-266 28-61 (228)
178 TIGR01184 ntrCD nitrate transp 94.2 0.027 5.9E-07 56.7 2.3 31 235-265 5-35 (230)
179 PRK10908 cell division protein 94.2 0.028 6.1E-07 56.0 2.4 32 235-266 22-53 (222)
180 PF13521 AAA_28: AAA domain; P 94.2 0.026 5.7E-07 53.5 2.1 36 243-284 1-36 (163)
181 PRK10575 iron-hydroxamate tran 94.2 0.027 5.8E-07 58.0 2.3 33 233-265 29-61 (265)
182 cd03263 ABC_subfamily_A The AB 94.2 0.028 6E-07 55.8 2.3 32 234-265 21-52 (220)
183 cd03223 ABCD_peroxisomal_ALDP 94.2 0.03 6.4E-07 53.8 2.4 33 233-265 19-51 (166)
184 cd03246 ABCC_Protease_Secretio 94.2 0.029 6.3E-07 54.0 2.4 32 235-266 22-53 (173)
185 cd03301 ABC_MalK_N The N-termi 94.2 0.028 6.2E-07 55.4 2.3 32 234-265 19-50 (213)
186 PF00154 RecA: recA bacterial 94.2 0.081 1.8E-06 56.9 5.9 119 223-365 32-155 (322)
187 PRK08727 hypothetical protein; 94.1 0.2 4.3E-06 51.0 8.4 127 242-386 42-173 (233)
188 PRK11248 tauB taurine transpor 94.1 0.029 6.2E-07 57.6 2.4 33 233-265 19-51 (255)
189 PRK10771 thiQ thiamine transpo 94.1 0.028 6.1E-07 56.5 2.3 33 233-265 17-49 (232)
190 TIGR01978 sufC FeS assembly AT 94.1 0.026 5.6E-07 56.8 2.0 32 233-264 18-49 (243)
191 PRK14242 phosphate transporter 94.1 0.024 5.2E-07 57.6 1.7 30 235-264 26-55 (253)
192 PRK15177 Vi polysaccharide exp 94.1 0.03 6.4E-07 56.0 2.3 32 233-264 5-36 (213)
193 cd03251 ABCC_MsbA MsbA is an e 94.1 0.025 5.5E-07 56.6 1.8 32 233-264 20-51 (234)
194 cd03231 ABC_CcmA_heme_exporter 94.1 0.03 6.6E-07 55.1 2.3 33 233-265 18-50 (201)
195 TIGR03771 anch_rpt_ABC anchore 94.1 0.032 7E-07 55.9 2.6 31 236-266 1-31 (223)
196 PRK13543 cytochrome c biogenes 94.1 0.029 6.4E-07 55.8 2.2 33 233-265 29-61 (214)
197 cd03233 ABC_PDR_domain1 The pl 94.1 0.024 5.2E-07 56.1 1.6 33 233-265 25-57 (202)
198 TIGR01526 nadR_NMN_Atrans nico 94.1 0.042 9.2E-07 58.8 3.6 106 241-352 162-281 (325)
199 PRK11432 fbpC ferric transport 94.1 0.029 6.2E-07 60.7 2.3 35 234-268 25-59 (351)
200 COG4525 TauB ABC-type taurine 94.1 0.033 7.1E-07 56.2 2.5 66 233-318 23-88 (259)
201 PRK11629 lolD lipoprotein tran 94.0 0.031 6.7E-07 56.2 2.3 32 234-265 28-59 (233)
202 PRK10895 lipopolysaccharide AB 94.0 0.031 6.7E-07 56.4 2.4 33 233-265 21-53 (241)
203 PRK11264 putative amino-acid A 94.0 0.032 6.9E-07 56.6 2.4 34 233-266 21-54 (250)
204 PRK14250 phosphate ABC transpo 94.0 0.031 6.8E-07 56.6 2.4 33 233-265 21-53 (241)
205 PRK11701 phnK phosphonate C-P 94.0 0.03 6.6E-07 57.2 2.3 33 233-265 24-56 (258)
206 PRK14267 phosphate ABC transpo 94.0 0.027 5.8E-07 57.3 1.9 32 234-265 23-54 (253)
207 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.0 0.03 6.5E-07 56.3 2.2 33 233-265 21-53 (238)
208 PRK15056 manganese/iron transp 94.0 0.031 6.7E-07 57.8 2.3 34 233-266 25-58 (272)
209 PRK14248 phosphate ABC transpo 94.0 0.026 5.7E-07 58.1 1.8 30 235-264 41-70 (268)
210 TIGR03005 ectoine_ehuA ectoine 94.0 0.033 7.1E-07 56.7 2.4 33 233-265 18-50 (252)
211 PRK09493 glnQ glutamine ABC tr 94.0 0.033 7E-07 56.2 2.3 33 233-265 19-51 (240)
212 COG4172 ABC-type uncharacteriz 94.0 0.049 1.1E-06 60.0 3.8 122 229-375 300-426 (534)
213 PRK13538 cytochrome c biogenes 94.0 0.034 7.3E-07 54.9 2.4 33 233-265 19-51 (204)
214 PRK10851 sulfate/thiosulfate t 94.0 0.031 6.7E-07 60.5 2.3 36 233-268 20-55 (353)
215 PRK14274 phosphate ABC transpo 94.0 0.027 5.9E-07 57.6 1.8 32 233-264 30-61 (259)
216 COG4555 NatA ABC-type Na+ tran 94.0 0.048 1E-06 55.2 3.4 47 230-276 17-65 (245)
217 PRK11247 ssuB aliphatic sulfon 93.9 0.033 7.1E-07 57.5 2.3 34 233-266 30-63 (257)
218 PRK14239 phosphate transporter 93.9 0.028 6.1E-07 57.0 1.8 31 234-264 24-54 (252)
219 cd03217 ABC_FeS_Assembly ABC-t 93.9 0.029 6.3E-07 55.3 1.8 32 233-264 18-49 (200)
220 PRK10247 putative ABC transpor 93.9 0.034 7.3E-07 55.8 2.3 32 233-264 25-56 (225)
221 COG4987 CydC ABC-type transpor 93.9 0.034 7.4E-07 62.8 2.6 34 235-268 358-391 (573)
222 TIGR03740 galliderm_ABC gallid 93.9 0.034 7.4E-07 55.4 2.3 31 235-265 20-50 (223)
223 TIGR01188 drrA daunorubicin re 93.9 0.034 7.4E-07 58.5 2.4 33 234-266 12-44 (302)
224 TIGR02323 CP_lyasePhnK phospho 93.9 0.035 7.6E-07 56.4 2.3 33 233-265 21-53 (253)
225 cd03252 ABCC_Hemolysin The ABC 93.8 0.035 7.5E-07 55.8 2.3 32 233-264 20-51 (237)
226 PRK11650 ugpC glycerol-3-phosp 93.8 0.034 7.3E-07 60.3 2.3 36 233-268 22-57 (356)
227 PRK14262 phosphate ABC transpo 93.8 0.03 6.6E-07 56.8 1.8 31 234-264 22-52 (250)
228 PRK13632 cbiO cobalt transport 93.8 0.035 7.7E-07 57.4 2.4 33 235-267 29-61 (271)
229 TIGR03015 pepcterm_ATPase puta 93.8 0.19 4.2E-06 51.0 7.7 26 241-266 43-68 (269)
230 cd03236 ABC_RNaseL_inhibitor_d 93.8 0.04 8.6E-07 56.9 2.7 31 238-268 23-53 (255)
231 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.8 0.036 7.9E-07 52.0 2.2 31 236-266 21-51 (144)
232 cd03290 ABCC_SUR1_N The SUR do 93.8 0.036 7.7E-07 55.1 2.3 29 236-264 22-50 (218)
233 TIGR02770 nickel_nikD nickel i 93.8 0.031 6.7E-07 56.2 1.8 33 234-266 5-37 (230)
234 TIGR03265 PhnT2 putative 2-ami 93.8 0.035 7.5E-07 60.1 2.3 36 233-268 22-57 (353)
235 PRK14273 phosphate ABC transpo 93.8 0.032 6.9E-07 56.9 1.9 32 234-265 26-57 (254)
236 PF00931 NB-ARC: NB-ARC domain 93.8 0.16 3.5E-06 52.0 7.1 43 239-281 17-63 (287)
237 PF13479 AAA_24: AAA domain 93.8 0.32 7E-06 48.7 9.1 22 240-261 2-23 (213)
238 TIGR03411 urea_trans_UrtD urea 93.8 0.037 8E-07 55.8 2.3 31 234-264 21-51 (242)
239 PRK10253 iron-enterobactin tra 93.8 0.036 7.7E-07 57.1 2.2 32 234-265 26-57 (265)
240 PRK11614 livF leucine/isoleuci 93.8 0.035 7.6E-07 55.9 2.1 30 235-264 25-54 (237)
241 TIGR02324 CP_lyasePhnL phospho 93.8 0.038 8.3E-07 55.0 2.4 33 233-265 26-58 (224)
242 PRK14256 phosphate ABC transpo 93.8 0.031 6.8E-07 56.8 1.8 30 235-264 24-53 (252)
243 cd03248 ABCC_TAP TAP, the Tran 93.7 0.038 8.2E-07 55.2 2.3 30 236-265 35-64 (226)
244 TIGR00972 3a0107s01c2 phosphat 93.7 0.033 7.2E-07 56.5 1.8 33 233-265 19-51 (247)
245 PRK14241 phosphate transporter 93.7 0.032 6.9E-07 57.1 1.7 31 234-264 23-53 (258)
246 PRK15093 antimicrobial peptide 93.7 0.033 7.1E-07 59.6 1.9 33 233-265 25-57 (330)
247 cd03267 ABC_NatA_like Similar 93.7 0.038 8.3E-07 55.9 2.3 33 233-265 39-71 (236)
248 cd03228 ABCC_MRP_Like The MRP 93.7 0.04 8.8E-07 52.9 2.3 32 235-266 22-53 (171)
249 cd03369 ABCC_NFT1 Domain 2 of 93.7 0.04 8.7E-07 54.3 2.4 32 234-265 27-58 (207)
250 PF00004 AAA: ATPase family as 93.7 0.043 9.2E-07 49.0 2.3 33 244-277 1-33 (132)
251 PRK00411 cdc6 cell division co 93.7 0.32 6.9E-06 52.5 9.4 93 240-353 54-151 (394)
252 PRK13649 cbiO cobalt transport 93.6 0.039 8.4E-07 57.2 2.2 33 234-266 26-58 (280)
253 cd03244 ABCC_MRP_domain2 Domai 93.6 0.041 8.9E-07 54.6 2.3 32 234-265 23-54 (221)
254 TIGR01189 ccmA heme ABC export 93.6 0.042 9.2E-07 53.8 2.4 32 234-265 19-50 (198)
255 CHL00131 ycf16 sulfate ABC tra 93.6 0.034 7.3E-07 56.5 1.7 30 235-264 27-56 (252)
256 PRK13639 cbiO cobalt transport 93.6 0.039 8.5E-07 57.2 2.2 34 233-266 20-53 (275)
257 PRK09544 znuC high-affinity zi 93.6 0.04 8.7E-07 56.5 2.3 32 234-265 23-54 (251)
258 PRK13638 cbiO cobalt transport 93.6 0.04 8.7E-07 56.9 2.3 32 234-265 20-51 (271)
259 TIGR02769 nickel_nikE nickel i 93.6 0.042 9.2E-07 56.5 2.4 33 233-265 29-61 (265)
260 PRK05973 replicative DNA helic 93.6 0.13 2.8E-06 53.0 6.0 53 237-289 60-114 (237)
261 PRK08118 topology modulation p 93.6 0.04 8.8E-07 53.2 2.1 26 242-267 2-27 (167)
262 cd03294 ABC_Pro_Gly_Bertaine T 93.6 0.042 9E-07 56.8 2.4 33 233-265 42-74 (269)
263 PRK14253 phosphate ABC transpo 93.6 0.035 7.7E-07 56.3 1.8 31 234-264 22-52 (249)
264 PRK09984 phosphonate/organopho 93.6 0.041 8.8E-07 56.4 2.3 34 233-266 22-55 (262)
265 PRK13648 cbiO cobalt transport 93.6 0.042 9E-07 56.7 2.3 33 233-265 27-59 (269)
266 cd03213 ABCG_EPDR ABCG transpo 93.6 0.037 8E-07 54.4 1.8 32 234-265 28-59 (194)
267 PRK11831 putative ABC transpor 93.6 0.041 8.9E-07 56.8 2.3 33 233-265 25-57 (269)
268 TIGR01288 nodI ATP-binding ABC 93.6 0.042 9E-07 57.9 2.3 34 233-266 22-55 (303)
269 PRK14272 phosphate ABC transpo 93.6 0.036 7.9E-07 56.2 1.8 31 234-264 23-53 (252)
270 PRK11300 livG leucine/isoleuci 93.5 0.041 8.8E-07 55.9 2.2 33 233-265 23-55 (255)
271 PRK13548 hmuV hemin importer A 93.5 0.042 9.1E-07 56.4 2.3 31 235-265 22-52 (258)
272 COG0468 RecA RecA/RadA recombi 93.5 0.2 4.4E-06 52.8 7.4 107 222-352 39-153 (279)
273 PRK10744 pstB phosphate transp 93.5 0.036 7.9E-07 56.8 1.8 31 234-264 32-62 (260)
274 cd03253 ABCC_ATM1_transporter 93.5 0.043 9.3E-07 55.1 2.3 33 233-265 19-51 (236)
275 cd03264 ABC_drug_resistance_li 93.5 0.041 8.8E-07 54.3 2.1 31 233-264 18-48 (211)
276 PRK14237 phosphate transporter 93.5 0.036 7.9E-07 57.1 1.8 31 235-265 40-70 (267)
277 PRK14266 phosphate ABC transpo 93.5 0.037 8E-07 56.2 1.8 33 232-264 20-52 (250)
278 cd03237 ABC_RNaseL_inhibitor_d 93.5 0.049 1.1E-06 55.9 2.7 30 237-266 21-50 (246)
279 PRK13645 cbiO cobalt transport 93.5 0.041 9E-07 57.4 2.2 32 234-265 30-61 (289)
280 PRK07261 topology modulation p 93.5 0.047 1E-06 52.9 2.4 24 242-265 1-24 (171)
281 PRK10418 nikD nickel transport 93.5 0.037 8E-07 56.5 1.8 33 233-265 21-53 (254)
282 PRK14251 phosphate ABC transpo 93.5 0.038 8.1E-07 56.2 1.8 31 234-264 23-53 (251)
283 PRK10078 ribose 1,5-bisphospho 93.5 0.055 1.2E-06 52.8 2.8 29 240-268 1-29 (186)
284 PRK14244 phosphate ABC transpo 93.5 0.038 8.3E-07 56.2 1.8 32 233-264 23-54 (251)
285 TIGR00968 3a0106s01 sulfate AB 93.4 0.045 9.9E-07 55.3 2.3 30 236-265 21-50 (237)
286 PRK14245 phosphate ABC transpo 93.4 0.038 8.2E-07 56.2 1.8 31 233-263 21-51 (250)
287 PRK13647 cbiO cobalt transport 93.4 0.044 9.5E-07 56.9 2.2 32 235-266 25-56 (274)
288 PRK14268 phosphate ABC transpo 93.4 0.039 8.4E-07 56.5 1.8 32 233-264 30-61 (258)
289 PRK14270 phosphate ABC transpo 93.4 0.039 8.5E-07 56.1 1.8 30 235-264 24-53 (251)
290 PRK14259 phosphate ABC transpo 93.4 0.039 8.5E-07 57.0 1.8 32 233-264 31-62 (269)
291 PRK09452 potA putrescine/sperm 93.4 0.044 9.5E-07 59.9 2.2 36 233-268 32-67 (375)
292 PRK14265 phosphate ABC transpo 93.4 0.04 8.7E-07 57.2 1.8 32 233-264 38-69 (274)
293 PF13191 AAA_16: AAA ATPase do 93.4 0.095 2E-06 49.7 4.2 43 236-278 19-63 (185)
294 PRK14249 phosphate ABC transpo 93.4 0.046 1E-06 55.6 2.2 34 233-266 22-55 (251)
295 PRK14261 phosphate ABC transpo 93.4 0.04 8.8E-07 56.1 1.8 31 234-264 25-55 (253)
296 cd03232 ABC_PDR_domain2 The pl 93.3 0.039 8.5E-07 54.0 1.6 29 235-263 27-55 (192)
297 PRK13646 cbiO cobalt transport 93.3 0.047 1E-06 57.0 2.3 33 234-266 26-58 (286)
298 PRK09473 oppD oligopeptide tra 93.3 0.036 7.9E-07 59.4 1.5 33 233-265 34-66 (330)
299 PRK11308 dppF dipeptide transp 93.3 0.041 8.8E-07 58.9 1.8 33 233-265 33-65 (327)
300 TIGR02982 heterocyst_DevA ABC 93.3 0.05 1.1E-06 54.2 2.4 33 233-265 23-55 (220)
301 PRK10619 histidine/lysine/argi 93.3 0.049 1.1E-06 55.6 2.3 32 234-265 24-55 (257)
302 PRK13641 cbiO cobalt transport 93.3 0.048 1E-06 57.0 2.3 34 233-266 25-58 (287)
303 PRK13640 cbiO cobalt transport 93.3 0.047 1E-06 56.9 2.2 33 234-266 26-58 (282)
304 PRK14236 phosphate transporter 93.3 0.042 9.1E-07 56.8 1.8 32 233-264 43-74 (272)
305 cd03234 ABCG_White The White s 93.2 0.043 9.3E-07 54.9 1.7 33 233-265 25-57 (226)
306 PRK14246 phosphate ABC transpo 93.2 0.05 1.1E-06 55.9 2.3 34 233-266 28-61 (257)
307 PRK11607 potG putrescine trans 93.2 0.048 1E-06 59.6 2.2 35 234-268 38-72 (377)
308 PRK13651 cobalt transporter AT 93.2 0.042 9E-07 58.2 1.7 33 233-265 25-57 (305)
309 COG4167 SapF ABC-type antimicr 93.2 0.043 9.4E-07 54.9 1.7 30 235-264 33-62 (267)
310 PRK14243 phosphate transporter 93.2 0.045 9.8E-07 56.3 1.9 32 233-264 28-59 (264)
311 PRK14260 phosphate ABC transpo 93.2 0.044 9.4E-07 56.2 1.8 31 234-264 26-56 (259)
312 TIGR02142 modC_ABC molybdenum 93.2 0.059 1.3E-06 58.2 2.8 35 233-267 15-49 (354)
313 PRK14271 phosphate ABC transpo 93.2 0.044 9.6E-07 57.0 1.8 32 233-264 39-70 (276)
314 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.2 0.053 1.1E-06 54.5 2.3 32 233-264 40-71 (224)
315 TIGR03873 F420-0_ABC_ATP propo 93.2 0.051 1.1E-06 55.5 2.2 30 236-265 22-51 (256)
316 PRK14254 phosphate ABC transpo 93.2 0.044 9.5E-07 57.3 1.8 32 233-264 57-88 (285)
317 PF13671 AAA_33: AAA domain; P 93.2 0.52 1.1E-05 43.0 8.6 23 244-266 2-24 (143)
318 PRK11231 fecE iron-dicitrate t 93.2 0.052 1.1E-06 55.4 2.3 30 235-264 22-51 (255)
319 PRK13643 cbiO cobalt transport 93.1 0.043 9.3E-07 57.4 1.6 33 233-265 24-56 (288)
320 TIGR02868 CydC thiol reductant 93.1 0.051 1.1E-06 61.3 2.4 36 233-268 353-388 (529)
321 PRK14269 phosphate ABC transpo 93.1 0.046 9.9E-07 55.5 1.8 32 233-264 20-51 (246)
322 PRK15079 oligopeptide ABC tran 93.1 0.044 9.6E-07 58.8 1.7 33 233-265 39-71 (331)
323 PRK10416 signal recognition pa 93.1 0.34 7.5E-06 51.9 8.5 38 239-276 112-151 (318)
324 PRK10419 nikE nickel transport 93.1 0.055 1.2E-06 55.9 2.4 33 233-265 30-62 (268)
325 TIGR02314 ABC_MetN D-methionin 93.1 0.053 1.1E-06 58.6 2.3 36 233-268 23-58 (343)
326 cd03299 ABC_ModC_like Archeal 93.1 0.055 1.2E-06 54.6 2.3 31 235-265 19-49 (235)
327 PRK13547 hmuV hemin importer A 93.1 0.047 1E-06 56.8 1.8 33 233-265 19-51 (272)
328 PRK13637 cbiO cobalt transport 93.1 0.053 1.1E-06 56.7 2.2 33 234-266 26-58 (287)
329 PRK14238 phosphate transporter 93.1 0.047 1E-06 56.5 1.8 32 233-264 42-73 (271)
330 PRK13650 cbiO cobalt transport 93.1 0.054 1.2E-06 56.3 2.3 33 233-265 25-57 (279)
331 PRK14275 phosphate ABC transpo 93.1 0.047 1E-06 57.1 1.8 32 233-264 57-88 (286)
332 PRK13546 teichoic acids export 93.0 0.048 1E-06 56.6 1.8 32 233-264 42-73 (264)
333 PF03308 ArgK: ArgK protein; 93.0 0.037 8E-07 57.7 1.0 98 228-325 15-188 (266)
334 PRK11000 maltose/maltodextrin 93.0 0.054 1.2E-06 58.9 2.3 35 233-267 21-55 (369)
335 PF06414 Zeta_toxin: Zeta toxi 93.0 0.058 1.3E-06 53.2 2.3 86 244-352 18-104 (199)
336 PRK11022 dppD dipeptide transp 93.0 0.046 1E-06 58.4 1.7 32 233-264 25-56 (326)
337 COG1134 TagH ABC-type polysacc 93.0 0.049 1.1E-06 56.2 1.8 32 233-264 45-76 (249)
338 PRK15112 antimicrobial peptide 93.0 0.059 1.3E-06 55.6 2.4 33 233-265 31-63 (267)
339 cd00267 ABC_ATPase ABC (ATP-bi 93.0 0.061 1.3E-06 50.7 2.3 37 232-268 16-52 (157)
340 PRK14264 phosphate ABC transpo 93.0 0.049 1.1E-06 57.5 1.8 32 233-264 63-94 (305)
341 cd01125 repA Hexameric Replica 92.9 0.61 1.3E-05 47.3 9.6 23 241-263 1-23 (239)
342 COG3840 ThiQ ABC-type thiamine 92.9 0.055 1.2E-06 54.1 1.9 30 236-265 20-49 (231)
343 cd03300 ABC_PotA_N PotA is an 92.9 0.063 1.4E-06 54.0 2.4 33 234-266 19-51 (232)
344 COG1125 OpuBA ABC-type proline 92.9 0.052 1.1E-06 56.7 1.8 37 229-265 14-51 (309)
345 PRK09580 sufC cysteine desulfu 92.9 0.052 1.1E-06 54.9 1.8 30 235-264 21-50 (248)
346 PRK14235 phosphate transporter 92.9 0.052 1.1E-06 56.0 1.8 33 233-265 37-69 (267)
347 PRK03695 vitamin B12-transport 92.9 0.05 1.1E-06 55.5 1.7 33 232-264 13-45 (248)
348 TIGR01277 thiQ thiamine ABC tr 92.9 0.061 1.3E-06 53.3 2.2 33 233-265 16-48 (213)
349 TIGR03258 PhnT 2-aminoethylpho 92.9 0.06 1.3E-06 58.6 2.3 34 233-266 23-56 (362)
350 PRK13644 cbiO cobalt transport 92.8 0.061 1.3E-06 55.8 2.2 33 233-265 20-52 (274)
351 PRK13634 cbiO cobalt transport 92.8 0.06 1.3E-06 56.4 2.2 33 235-267 27-59 (290)
352 cd03297 ABC_ModC_molybdenum_tr 92.8 0.07 1.5E-06 52.9 2.5 32 233-265 16-47 (214)
353 PRK14252 phosphate ABC transpo 92.8 0.054 1.2E-06 55.7 1.8 33 232-264 33-65 (265)
354 PRK13635 cbiO cobalt transport 92.8 0.063 1.4E-06 55.9 2.2 32 235-266 27-58 (279)
355 COG4181 Predicted ABC-type tra 92.8 0.057 1.2E-06 53.6 1.7 33 236-268 31-63 (228)
356 PRK13633 cobalt transporter AT 92.8 0.065 1.4E-06 55.7 2.3 35 233-267 28-62 (280)
357 PRK13652 cbiO cobalt transport 92.7 0.065 1.4E-06 55.6 2.3 34 233-266 22-55 (277)
358 PRK06893 DNA replication initi 92.7 0.25 5.4E-06 50.1 6.4 22 243-264 41-62 (229)
359 TIGR01186 proV glycine betaine 92.7 0.062 1.4E-06 58.5 2.2 36 233-268 11-46 (363)
360 PRK13537 nodulation ABC transp 92.7 0.067 1.5E-06 56.6 2.3 36 233-268 25-60 (306)
361 PRK13642 cbiO cobalt transport 92.7 0.066 1.4E-06 55.6 2.2 31 235-265 27-57 (277)
362 COG1123 ATPase components of v 92.7 0.089 1.9E-06 59.9 3.4 46 229-274 304-352 (539)
363 TIGR02880 cbbX_cfxQ probable R 92.6 0.71 1.5E-05 48.5 9.9 24 241-264 58-81 (284)
364 PRK00300 gmk guanylate kinase; 92.6 0.08 1.7E-06 51.9 2.6 28 239-266 3-30 (205)
365 PRK14258 phosphate ABC transpo 92.5 0.064 1.4E-06 55.1 1.8 33 233-265 25-57 (261)
366 PRK13631 cbiO cobalt transport 92.5 0.072 1.6E-06 56.9 2.3 30 236-265 47-76 (320)
367 PRK14257 phosphate ABC transpo 92.5 0.088 1.9E-06 56.4 2.9 33 233-265 100-132 (329)
368 PRK14722 flhF flagellar biosyn 92.5 0.38 8.3E-06 52.8 7.8 40 225-264 120-160 (374)
369 PRK13341 recombination factor 92.5 0.19 4.1E-06 59.6 5.9 50 239-288 50-99 (725)
370 TIGR03522 GldA_ABC_ATP gliding 92.5 0.071 1.5E-06 56.1 2.2 32 233-264 20-51 (301)
371 PRK14263 phosphate ABC transpo 92.4 0.066 1.4E-06 55.2 1.8 32 233-264 26-57 (261)
372 TIGR00235 udk uridine kinase. 92.4 0.063 1.4E-06 53.2 1.6 25 240-264 5-29 (207)
373 cd03282 ABC_MSH4_euk MutS4 hom 92.3 0.76 1.7E-05 46.0 9.2 33 230-262 18-50 (204)
374 cd03288 ABCC_SUR2 The SUR doma 92.3 0.068 1.5E-06 54.8 1.8 31 234-264 40-70 (257)
375 PRK11153 metN DL-methionine tr 92.3 0.077 1.7E-06 57.1 2.3 34 233-266 23-56 (343)
376 cd03291 ABCC_CFTR1 The CFTR su 92.3 0.082 1.8E-06 55.5 2.3 32 233-264 55-86 (282)
377 COG4559 ABC-type hemin transpo 92.2 0.081 1.8E-06 54.0 2.1 39 226-264 11-50 (259)
378 cd01124 KaiC KaiC is a circadi 92.2 0.16 3.4E-06 48.6 4.0 46 244-289 2-49 (187)
379 PRK13636 cbiO cobalt transport 92.1 0.086 1.9E-06 55.0 2.3 33 233-265 24-56 (283)
380 PRK05480 uridine/cytidine kina 92.1 0.12 2.6E-06 51.1 3.2 27 239-265 4-30 (209)
381 PRK13536 nodulation factor exp 92.1 0.087 1.9E-06 56.8 2.3 34 233-266 59-92 (340)
382 TIGR02881 spore_V_K stage V sp 92.1 0.15 3.2E-06 52.5 4.0 27 238-264 39-65 (261)
383 PRK08233 hypothetical protein; 92.1 0.12 2.7E-06 49.1 3.1 26 240-265 2-27 (182)
384 cd03270 ABC_UvrA_I The excisio 92.0 0.07 1.5E-06 53.9 1.4 25 234-258 14-38 (226)
385 PRK14962 DNA polymerase III su 92.0 0.6 1.3E-05 52.7 8.9 24 244-267 39-62 (472)
386 PF01637 Arch_ATPase: Archaeal 92.0 0.039 8.6E-07 53.7 -0.4 106 240-353 19-131 (234)
387 TIGR03269 met_CoM_red_A2 methy 92.0 0.077 1.7E-06 59.9 1.8 32 233-264 18-49 (520)
388 TIGR02322 phosphon_PhnN phosph 92.0 0.083 1.8E-06 50.7 1.8 25 241-265 1-25 (179)
389 PRK10762 D-ribose transporter 92.0 0.085 1.9E-06 59.3 2.2 32 233-264 22-53 (501)
390 cd03289 ABCC_CFTR2 The CFTR su 92.0 0.081 1.7E-06 55.4 1.8 31 235-265 24-54 (275)
391 PRK14956 DNA polymerase III su 91.9 0.58 1.3E-05 53.0 8.6 106 242-368 41-150 (484)
392 PF13238 AAA_18: AAA domain; P 91.9 0.068 1.5E-06 47.5 1.1 22 244-265 1-22 (129)
393 COG4136 ABC-type uncharacteriz 91.9 0.1 2.2E-06 50.9 2.2 34 235-268 22-55 (213)
394 PRK10636 putative ABC transpor 91.9 0.091 2E-06 61.2 2.4 33 233-265 19-51 (638)
395 cd00227 CPT Chloramphenicol (C 91.9 0.66 1.4E-05 44.7 8.0 28 240-267 1-28 (175)
396 KOG0060|consensus 91.9 0.1 2.3E-06 59.5 2.7 45 220-265 440-486 (659)
397 COG4586 ABC-type uncharacteriz 91.9 0.085 1.8E-06 55.6 1.8 34 230-263 39-72 (325)
398 PRK11147 ABC transporter ATPas 91.8 0.094 2E-06 60.9 2.3 34 233-266 21-54 (635)
399 cd02027 APSK Adenosine 5'-phos 91.7 0.75 1.6E-05 43.5 8.0 22 244-265 2-23 (149)
400 TIGR03238 dnd_assoc_3 dnd syst 91.7 0.26 5.6E-06 55.7 5.6 85 222-314 11-101 (504)
401 COG1122 CbiO ABC-type cobalt t 91.7 0.088 1.9E-06 54.1 1.7 32 233-264 22-53 (235)
402 PRK11176 lipid transporter ATP 91.7 0.1 2.2E-06 59.5 2.4 35 233-267 361-395 (582)
403 COG0470 HolB ATPase involved i 91.7 0.38 8.3E-06 49.9 6.5 22 243-264 26-47 (325)
404 CHL00195 ycf46 Ycf46; Provisio 91.6 0.37 8E-06 54.7 6.7 46 243-288 261-313 (489)
405 PRK14964 DNA polymerase III su 91.6 0.51 1.1E-05 53.6 7.8 23 242-264 36-58 (491)
406 PLN03073 ABC transporter F fam 91.6 0.087 1.9E-06 62.3 1.8 31 233-263 195-225 (718)
407 PRK12724 flagellar biosynthesi 91.6 0.77 1.7E-05 51.3 9.0 25 239-263 221-245 (432)
408 KOG0057|consensus 91.6 0.11 2.5E-06 58.9 2.5 47 235-285 372-418 (591)
409 cd00984 DnaB_C DnaB helicase C 91.6 0.11 2.4E-06 52.2 2.2 47 238-284 10-59 (242)
410 COG1127 Ttg2A ABC-type transpo 91.6 0.11 2.5E-06 53.7 2.3 36 230-265 22-58 (263)
411 TIGR00959 ffh signal recogniti 91.5 0.55 1.2E-05 52.5 7.9 91 242-351 100-193 (428)
412 cd03287 ABC_MSH3_euk MutS3 hom 91.5 0.96 2.1E-05 46.1 9.0 34 230-263 20-53 (222)
413 PRK09536 btuD corrinoid ABC tr 91.5 0.1 2.2E-06 57.7 2.1 32 234-265 22-53 (402)
414 PRK11819 putative ABC transpor 91.5 0.11 2.4E-06 59.4 2.4 32 233-264 25-56 (556)
415 PRK10070 glycine betaine trans 91.5 0.1 2.2E-06 57.7 2.0 33 233-265 46-78 (400)
416 PRK10938 putative molybdenum t 91.5 0.11 2.3E-06 58.3 2.3 32 234-265 22-53 (490)
417 PF07728 AAA_5: AAA domain (dy 91.5 0.097 2.1E-06 48.0 1.6 43 244-288 2-44 (139)
418 PRK09087 hypothetical protein; 91.5 0.71 1.5E-05 47.0 8.0 30 244-276 47-76 (226)
419 PRK15064 ABC transporter ATP-b 91.5 0.11 2.4E-06 58.8 2.4 31 234-264 20-50 (530)
420 PRK09165 replicative DNA helic 91.4 0.31 6.8E-06 55.3 5.9 42 223-264 198-240 (497)
421 PRK14957 DNA polymerase III su 91.4 0.5 1.1E-05 54.3 7.5 22 244-265 41-62 (546)
422 PRK14531 adenylate kinase; Pro 91.4 0.12 2.6E-06 50.3 2.2 33 242-277 3-35 (183)
423 PRK11174 cysteine/glutathione 91.3 0.099 2.1E-06 59.8 1.8 32 234-265 369-400 (588)
424 cd01130 VirB11-like_ATPase Typ 91.3 0.16 3.4E-06 49.7 3.0 31 238-268 22-52 (186)
425 PRK09700 D-allose transporter 91.3 0.11 2.4E-06 58.5 2.1 32 233-264 23-54 (510)
426 PRK06217 hypothetical protein; 91.3 0.13 2.9E-06 49.9 2.4 26 242-267 2-27 (183)
427 COG1118 CysA ABC-type sulfate/ 91.3 0.17 3.7E-06 54.1 3.4 36 233-268 20-55 (345)
428 PRK14530 adenylate kinase; Pro 91.3 0.13 2.7E-06 51.4 2.3 34 240-276 2-35 (215)
429 PRK15134 microcin C ABC transp 91.2 0.1 2.2E-06 59.2 1.7 32 233-264 27-58 (529)
430 TIGR03263 guanyl_kin guanylate 91.2 0.11 2.4E-06 49.7 1.8 25 241-265 1-25 (180)
431 PRK15064 ABC transporter ATP-b 91.2 0.12 2.6E-06 58.6 2.3 33 233-265 337-369 (530)
432 COG4608 AppF ABC-type oligopep 91.2 0.11 2.4E-06 54.4 1.8 60 229-288 26-95 (268)
433 TIGR00064 ftsY signal recognit 91.2 0.94 2E-05 47.5 8.8 27 238-264 69-95 (272)
434 PRK08691 DNA polymerase III su 91.2 0.64 1.4E-05 54.8 8.2 36 242-277 39-75 (709)
435 PRK09700 D-allose transporter 91.2 0.12 2.6E-06 58.2 2.2 33 233-265 281-313 (510)
436 KOG2028|consensus 91.2 0.31 6.6E-06 53.4 5.1 48 243-290 164-214 (554)
437 COG0444 DppD ABC-type dipeptid 91.1 0.16 3.5E-06 54.3 3.1 38 229-266 18-56 (316)
438 TIGR01193 bacteriocin_ABC ABC- 91.1 0.12 2.7E-06 60.5 2.3 33 233-265 492-524 (708)
439 KOG0743|consensus 91.1 0.28 6.1E-06 54.7 4.9 63 245-321 239-302 (457)
440 TIGR02633 xylG D-xylose ABC tr 91.1 0.11 2.3E-06 58.5 1.7 32 234-265 20-51 (500)
441 PRK10790 putative multidrug tr 91.1 0.12 2.7E-06 59.1 2.3 35 233-267 359-393 (592)
442 PF00448 SRP54: SRP54-type pro 91.0 0.61 1.3E-05 46.5 6.9 46 243-289 3-51 (196)
443 PRK13549 xylose transporter AT 91.0 0.11 2.3E-06 58.7 1.6 32 234-265 24-55 (506)
444 TIGR00635 ruvB Holliday juncti 90.9 0.24 5.2E-06 51.6 4.1 29 242-270 31-59 (305)
445 PF13245 AAA_19: Part of AAA d 90.9 0.16 3.5E-06 43.1 2.3 23 241-263 10-33 (76)
446 TIGR02633 xylG D-xylose ABC tr 90.9 0.11 2.4E-06 58.2 1.7 36 230-265 274-310 (500)
447 PRK10636 putative ABC transpor 90.9 0.13 2.9E-06 59.8 2.4 32 234-265 331-362 (638)
448 PRK10522 multidrug transporter 90.9 0.13 2.9E-06 58.4 2.3 36 233-268 341-376 (547)
449 TIGR02857 CydD thiol reductant 90.9 0.14 3E-06 57.8 2.4 35 234-268 341-375 (529)
450 PRK13477 bifunctional pantoate 90.8 0.26 5.6E-06 56.2 4.5 58 226-286 269-326 (512)
451 TIGR03797 NHPM_micro_ABC2 NHPM 90.8 0.13 2.9E-06 60.0 2.3 34 233-266 471-504 (686)
452 PRK11160 cysteine/glutathione 90.8 0.14 3E-06 58.7 2.4 36 233-268 358-393 (574)
453 PRK00131 aroK shikimate kinase 90.8 0.17 3.7E-06 47.6 2.6 28 240-267 3-30 (175)
454 cd02023 UMPK Uridine monophosp 90.8 0.17 3.7E-06 49.5 2.7 22 244-265 2-23 (198)
455 TIGR01194 cyc_pep_trnsptr cycl 90.8 0.14 3E-06 58.5 2.3 34 235-268 362-395 (555)
456 COG1131 CcmA ABC-type multidru 90.7 0.15 3.2E-06 53.9 2.3 35 234-268 24-58 (293)
457 PRK10261 glutathione transport 90.7 0.14 3E-06 59.5 2.2 33 233-265 34-66 (623)
458 PLN00020 ribulose bisphosphate 90.7 0.29 6.3E-06 53.8 4.5 28 244-271 151-178 (413)
459 COG4107 PhnK ABC-type phosphon 90.7 0.29 6.3E-06 48.8 4.1 55 231-285 22-78 (258)
460 TIGR00455 apsK adenylylsulfate 90.6 1.1 2.4E-05 43.3 8.2 26 239-264 16-41 (184)
461 PRK04841 transcriptional regul 90.6 0.4 8.6E-06 57.2 6.0 58 230-289 21-78 (903)
462 PRK10789 putative multidrug tr 90.6 0.15 3.2E-06 58.4 2.4 34 233-266 333-366 (569)
463 PF01583 APS_kinase: Adenylyls 90.6 0.81 1.7E-05 44.4 7.0 84 240-350 1-85 (156)
464 TIGR01360 aden_kin_iso1 adenyl 90.6 0.18 3.9E-06 48.3 2.6 25 241-265 3-27 (188)
465 COG4988 CydD ABC-type transpor 90.6 0.15 3.3E-06 58.1 2.4 38 230-267 336-373 (559)
466 PRK06645 DNA polymerase III su 90.6 1 2.2E-05 51.4 9.0 26 242-267 44-69 (507)
467 PRK10762 D-ribose transporter 90.5 0.15 3.2E-06 57.4 2.2 34 233-266 270-303 (501)
468 TIGR03415 ABC_choXWV_ATP choli 90.5 0.15 3.2E-06 56.0 2.2 36 231-266 40-75 (382)
469 cd03279 ABC_sbcCD SbcCD and ot 90.4 0.18 3.9E-06 50.3 2.5 32 230-262 18-49 (213)
470 cd03243 ABC_MutS_homologs The 90.4 0.18 3.8E-06 49.8 2.4 27 237-263 25-51 (202)
471 PF13086 AAA_11: AAA domain; P 90.4 0.16 3.6E-06 49.3 2.2 22 243-264 19-40 (236)
472 TIGR03375 type_I_sec_LssB type 90.4 0.16 3.4E-06 59.5 2.4 34 233-266 483-516 (694)
473 PRK10982 galactose/methyl gala 90.3 0.15 3.3E-06 57.1 2.2 32 233-264 16-47 (491)
474 PF13604 AAA_30: AAA domain; P 90.3 0.5 1.1E-05 46.8 5.6 99 242-349 19-131 (196)
475 TIGR02928 orc1/cdc6 family rep 90.3 0.26 5.6E-06 52.6 3.7 96 240-353 39-142 (365)
476 PRK15439 autoinducer 2 ABC tra 90.3 0.16 3.5E-06 57.3 2.3 32 233-264 29-60 (510)
477 TIGR03719 ABC_ABC_ChvD ATP-bin 90.3 0.17 3.6E-06 57.8 2.4 32 233-264 23-54 (552)
478 PRK13549 xylose transporter AT 90.3 0.14 3.1E-06 57.6 1.9 36 229-264 275-311 (506)
479 TIGR03796 NHPM_micro_ABC1 NHPM 90.3 0.16 3.5E-06 59.5 2.4 33 233-265 497-529 (710)
480 TIGR02204 MsbA_rel ABC transpo 90.2 0.16 3.5E-06 57.7 2.3 31 235-265 360-390 (576)
481 COG1132 MdlB ABC-type multidru 90.2 0.17 3.6E-06 57.8 2.4 34 234-267 348-381 (567)
482 CHL00181 cbbX CbbX; Provisiona 90.2 2.1 4.5E-05 45.2 10.3 26 239-264 57-82 (287)
483 TIGR01842 type_I_sec_PrtD type 90.2 0.17 3.6E-06 57.5 2.3 33 233-265 336-368 (544)
484 KOG0056|consensus 90.2 0.35 7.6E-06 54.6 4.7 44 233-276 556-601 (790)
485 PRK14963 DNA polymerase III su 90.2 0.49 1.1E-05 53.9 6.0 24 242-265 37-60 (504)
486 cd02019 NK Nucleoside/nucleoti 90.2 0.16 3.5E-06 41.9 1.6 21 244-264 2-22 (69)
487 PF08477 Miro: Miro-like prote 90.1 0.17 3.7E-06 44.6 1.8 25 243-267 1-25 (119)
488 PRK09825 idnK D-gluconate kina 90.1 0.17 3.6E-06 49.5 1.9 28 240-267 2-29 (176)
489 cd01428 ADK Adenylate kinase ( 90.1 0.17 3.8E-06 48.7 2.0 23 243-265 1-23 (194)
490 PRK06762 hypothetical protein; 90.1 0.23 5E-06 47.1 2.8 31 242-272 3-33 (166)
491 PRK11147 ABC transporter ATPas 90.1 0.17 3.7E-06 58.8 2.3 31 234-264 338-368 (635)
492 TIGR02640 gas_vesic_GvpN gas v 90.1 0.22 4.7E-06 51.5 2.9 35 238-272 18-52 (262)
493 PRK03839 putative kinase; Prov 90.0 0.18 3.9E-06 48.5 2.1 24 243-266 2-25 (180)
494 TIGR01425 SRP54_euk signal rec 90.0 1.1 2.3E-05 50.2 8.4 46 241-288 100-149 (429)
495 PRK03846 adenylylsulfate kinas 90.0 1.2 2.6E-05 43.8 7.9 26 239-264 22-47 (198)
496 COG1222 RPT1 ATP-dependent 26S 89.9 0.3 6.5E-06 53.2 3.8 44 244-287 188-238 (406)
497 TIGR03269 met_CoM_red_A2 methy 89.9 0.18 4E-06 56.9 2.3 35 231-265 299-334 (520)
498 PRK15134 microcin C ABC transp 89.9 0.16 3.4E-06 57.5 1.8 36 230-265 300-336 (529)
499 TIGR01192 chvA glucan exporter 89.8 0.18 3.9E-06 58.0 2.2 35 233-267 353-387 (585)
500 PTZ00454 26S protease regulato 89.8 0.49 1.1E-05 52.3 5.5 31 242-272 180-210 (398)
No 1
>KOG1352|consensus
Probab=100.00 E-value=3e-185 Score=1428.25 Aligned_cols=606 Identities=85% Similarity=1.332 Sum_probs=597.7
Q ss_pred cccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceee
Q psy13480 9 ADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVE 88 (615)
Q Consensus 9 ~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~ 88 (615)
.+.+.+..+|+|.+|+||||++++|.|+.|||+|+||+..|.||||+++||.|+|||||+|+|+.+||||.+||+||||+
T Consensus 13 ~~e~~es~~G~v~~VSGPVV~a~~M~G~aMYELVrVGh~~LvGEiIrlegD~aTIQVYEeTsG~tVgDpvlrTgkPLsvE 92 (618)
T KOG1352|consen 13 LDEEEESEYGRVYSVSGPVVVAENMAGCAMYELVRVGHDELVGEIIRLEGDMATIQVYEETSGLTVGDPVLRTGKPLSVE 92 (618)
T ss_pred ccchhhhccceEEeccCceEehhcccchHHHHHHHcchHhhhhheeEecCceeEEEEEeccCCcccCCchhhcCCcceEe
Confidence 34466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCC
Q psy13480 89 LGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPP 168 (615)
Q Consensus 89 lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp 168 (615)
||||++|.|||||||||..+.+.+++.|||+|++.|+|||+.+|+|+|..+++||.|++||++|.|.||++++||||+||
T Consensus 93 LGPGimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~lpP 172 (618)
T KOG1352|consen 93 LGPGIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILLPP 172 (618)
T ss_pred eCcchhhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhceeecCC
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCCcccCCCCCCccccceeeeccccccccCceeeccC
Q psy13480 169 KAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPG 248 (615)
Q Consensus 169 ~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g 248 (615)
..+|+|+|||++|+|+++|+|+|+|.+|++++++|+|.||||.|||+.++++.+.||+|||||+|+||||.+||+.+|||
T Consensus 173 r~~Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~pRPv~ekl~an~PLltGQRvLDalfPcVqGGTtaIPG 252 (618)
T KOG1352|consen 173 RARGTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQPRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPG 252 (618)
T ss_pred ccCceEEEEecCCccccccEEEEEeecCceeeEEEEEecccCCCcchhhccCCCCcccccchHHHhhcchhcCCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q psy13480 249 AFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTG 328 (615)
Q Consensus 249 ~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg 328 (615)
.||||||++.|+|+|++++|+|||++||||||||.|++.+||+|....+|+.+++|+||.|||||||||+++|++|+|||
T Consensus 253 AFGCGKTVISQsLSKYSNSD~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPVAAREASIYTG 332 (618)
T KOG1352|consen 253 AFGCGKTVISQSLSKYSNSDAIIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPVAAREASIYTG 332 (618)
T ss_pred ccccchHHHHHHHhhccCCCeEEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhcCCCCchhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEee
Q psy13480 329 ITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAV 408 (615)
Q Consensus 329 ~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~V 408 (615)
+|+|||||||||||.+|+||+|||||||||||+||+|||+..|||+||.++||+||||||+++|||+|++.||+|++++|
T Consensus 333 ITlsEYfRDmG~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGsP~ReGsVsIVgAV 412 (618)
T KOG1352|consen 333 ITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPDREGSVSIVGAV 412 (618)
T ss_pred ccHHHHHHhcCcceeeeecchhHHHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHHHhcCceeecCCCCcCceeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHH
Q psy13480 409 SPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLS 488 (615)
Q Consensus 409 s~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~ 488 (615)
|||||||+||||.+|++|+++||.||++||+|.|||+|||+.|||+|+..+.+||++++|+|..++.+++++||++++|.
T Consensus 413 SPpGGDFsDPVTsATLgIvQVFWGLDKKLAQRKHFPSiNwliSYSkY~~aL~~~Ye~~~peF~~lRtk~keilq~eedl~ 492 (618)
T KOG1352|consen 413 SPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDPFYEKNYPEFVVLRTKAKEILQEEEDLS 492 (618)
T ss_pred cCCCCCcCCcchhhhhheeeehhcccHHHHhhccCCccchhhhHHHHHHHHHHHHHhcCCCccchHHHHHHHHhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHHHH
Q psy13480 489 EIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVESTAQSENKITWSVI 568 (615)
Q Consensus 489 ~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fyd~a~~ai~~g~~~~~~i~~~~i 568 (615)
+|+|++|+.+|++.|+.+|+++++++++|||||.|++||.||||.|++.||++++.|||.|+.|++.++..+++|+|..|
T Consensus 493 eivQLVGK~aL~etdKitLevaklik~DfLqQN~ys~YD~~CPfyKt~~Mlrn~i~fyd~a~~ave~~a~~~~kitw~~i 572 (618)
T KOG1352|consen 493 EIVQLVGKSALAETDKITLEVAKLIKDDFLQQNGYSPYDRFCPFYKTVGMLRNIIAFYDLARQAVENTAQSGNKITWSKI 572 (618)
T ss_pred HHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhcCCCchhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HhhhhHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q psy13480 569 RDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRNLED 615 (615)
Q Consensus 569 ~~~~~~~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f~~l~~ 615 (615)
++++.+++++|..|||.+| +++|.++.+.|+++.++|...|++|+|
T Consensus 573 r~~~gdi~y~lssmKF~dp-~~ge~~i~~~~~~L~~~~~~~Fr~led 618 (618)
T KOG1352|consen 573 RESTGDIFYQLSSMKFKDP-KDGEKEIKEDFEKLHEDIQQAFRELED 618 (618)
T ss_pred HHhhhhhhhhhhhhhccCc-cchhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999988 889999999999999999999999986
No 2
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=9.1e-180 Score=1467.00 Aligned_cols=590 Identities=83% Similarity=1.330 Sum_probs=571.6
Q ss_pred eeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCccccc
Q psy13480 16 RFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILG 95 (615)
Q Consensus 16 ~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgLLG 95 (615)
++|+|.+|+||+|+|+|+.+++|||+|+|++++++||||++++|.++|||||+|+||++|++|+.||+|+||+|||||||
T Consensus 1 ~~G~V~~v~G~vV~a~g~~~~~~gE~v~v~~~~l~gEVI~l~~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lGpglLG 80 (591)
T TIGR01042 1 EYGYIYKVSGPVVVAENMAGAAMYELVRVGHDELVGEIIRLEGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPGILG 80 (591)
T ss_pred CceEEEEEECCEEEEecCCCCCcCCEEEECCCceEEEEEEEcCCeEEEEEccCccCCCCCCEEEeCCCccEEEcCHHHhh
Confidence 36999999999999999999999999999877899999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCccee
Q psy13480 96 SIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVT 175 (615)
Q Consensus 96 rI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g~v~ 175 (615)
|||||+|||||++++.+++.||+||+++++||++++|+|+|..+|+||.|++||++|+|+||++|+|||||||+++|+|+
T Consensus 81 ~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~ 160 (591)
T TIGR01042 81 NIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTIT 160 (591)
T ss_pred cccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEE
Confidence 99999999999998888778999999999999999999999779999999999999999999999999999999999999
Q ss_pred EecCCCCccccceEEEEeecCcceeeeeecccccCCCCCcccCCCCCCccccceeeeccccccccCceeeccCCCCCCcc
Q psy13480 176 YIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT 255 (615)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt 255 (615)
+|+++|+|||+|+|++++++|+.++++|+|+||||.|||+.+|+++++||.||||+||+||||+||||+||||+||||||
T Consensus 161 ~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg~G~GKT 240 (591)
T TIGR01042 161 YIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRSPRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT 240 (591)
T ss_pred EEccCCCceeeeEEEEEeeCCceeeeccceeeecccCCChhhccCCCCccccchhhhhhccchhcCCeEEEEcCCCcCHH
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHH
Q psy13480 256 VISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYF 335 (615)
Q Consensus 256 ~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyf 335 (615)
+|+||||||++||||||++||||||||+||+++||+|+||++|++.++|+|||||+|||||||++|++|+|||+||||||
T Consensus 241 ~l~~~lak~s~aDviVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~ytg~tiAEYf 320 (591)
T TIGR01042 241 VISQSLSKYSNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEYF 320 (591)
T ss_pred HHHHHHHhccCcCEEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCCCC
Q psy13480 336 RDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDF 415 (615)
Q Consensus 336 rd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD~ 415 (615)
||||+|||||+|||||||+|+||||++|||||+++||||||||+||+||||||+++|+|+++++||||+|+|||||||||
T Consensus 321 RD~G~~Vll~~DS~tR~AeAlREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~~~~~~~~GSIT~i~aVs~~ggD~ 400 (591)
T TIGR01042 321 RDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGDF 400 (591)
T ss_pred HhcCCCEEEEecChHHHHHHHHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCCccCCCCCCCccEEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy13480 416 SDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVG 495 (615)
Q Consensus 416 s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i~~~~g 495 (615)
||||+++|++|+|+||+|||+||++||||||||+.|+|||++.+.+||.+|+++|.+++.+++++|++|+|+++|++++|
T Consensus 401 sePVt~~t~~i~~~f~~Ldr~LA~~ghyPAId~l~S~Sr~~~~l~~~~~~~~~~~~~~~~~~~~lL~~~~el~eiv~l~g 480 (591)
T TIGR01042 401 SDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEFVPLRTKAKEILQEEEDLNEIVQLVG 480 (591)
T ss_pred CCchHHHHHHHhcceeeeCHHHHhCCCCCCcCCchhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHHHHHhhhhHH
Q psy13480 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVESTAQSENKITWSVIRDSMSNI 575 (615)
Q Consensus 496 ~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fyd~a~~ai~~g~~~~~~i~~~~i~~~~~~~ 575 (615)
.+++|+.|++++++|+.++++|||||+|+++|+|||++||+.||+.|+.||++|++|+++|++-+++|+|..|++.+.++
T Consensus 481 ~~~l~~~d~~i~~~a~~i~e~FLqQ~a~~~~d~~~~~~kt~~~L~~i~~~~~~~~~~~~~~~~~~~ki~~~~i~~~~~~~ 560 (591)
T TIGR01042 481 KDALAETDKITLEVAKLIKEDFLQQNGYTPYDRFCPFYKTVGMMRNMIAFYDLARQAVERTAQDDNKITWSIIKESLGDL 560 (591)
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHccCCccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999888899
Q ss_pred HHHHhcCCCCCCCCchhHHHHHHHHHHHHHH
Q psy13480 576 LYQLSSMKFKDPVKDGEAKTRADFDQLYEDI 606 (615)
Q Consensus 576 ~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i 606 (615)
+++|.||||..| .+.++++.+.+++|.++|
T Consensus 561 ~~~~~~~k~~~~-~~~~~~~~~~~~kl~~ei 590 (591)
T TIGR01042 561 LYRLSSMKFEDP-SDGEAKIKADYEKLNEDM 590 (591)
T ss_pred HHHHHHhcCCCc-cchHHHHHHHHHHHHHhh
Confidence 999999999734 345556666666666655
No 3
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=6.8e-179 Score=1424.31 Aligned_cols=584 Identities=52% Similarity=0.907 Sum_probs=557.7
Q ss_pred eeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCcccccc
Q psy13480 17 FGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGS 96 (615)
Q Consensus 17 ~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgLLGr 96 (615)
.|+|++|+||+|+|+||.+++|||+|+||+.+|+||||+++||+|+|||||+|+||+||++|++||+||||+||||||+.
T Consensus 2 ~G~i~~isGp~V~a~gm~~~~my~~v~Vg~~~L~gEiI~i~gd~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGPGll~~ 81 (588)
T COG1155 2 MGKIIRISGPVVVAEGMEGAKMYDVVKVGEMGLIGEIIRIEGNRATIQVYEDTAGIRPGEKVENTGRPLSVELGPGLLKS 81 (588)
T ss_pred CceEEEEECCEEEEecCcCCceEEEEEEcCCceeEEEEEEeCCeEEEEEEeecCCCCCCCeeecCCCceEEEeCccHHhh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCC-CCccee
Q psy13480 97 IFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPK-AKGTVT 175 (615)
Q Consensus 97 I~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~-~~g~v~ 175 (615)
||||+||||+.+.+.++ .||+||+.+|+|||+++|+|+| .+|+||.|.+||++|+|+||++| |+||+||+ .+|+|+
T Consensus 82 IyDGiQrPL~~i~e~sg-~Fi~RGv~~p~Ldr~~kW~F~P-~~~~Gd~V~~GdvlGtV~Et~~i-~~imvpp~~~~~~v~ 158 (588)
T COG1155 82 IYDGIQRPLDVIKETSG-DFIARGLNPPALDRKKKWDFVP-AVKKGDTVYPGDVLGTVQETSLI-THRIMVPPGVSGKVT 158 (588)
T ss_pred hhhhccChHHHHHHHhh-hHhhcCCCCCCCCccccccccc-ccccCCEeccCceEEEeccCCce-EEEEeCCCCCceEEE
Confidence 99999999999998886 8999999999999999999999 56999999999999999999999 88888886 467899
Q ss_pred EecCCCCccccceEEEEeecCcceeeeeecccccCCCCCcccCCCCCCccccceeeeccccccccCceeeccCCCCCCcc
Q psy13480 176 YIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT 255 (615)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt 255 (615)
||+..|+|||+|+|++++++++.++++|+|+||||.|||+++||++++||+||||+||+|||++||||+|||||||||||
T Consensus 159 ~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~rp~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsGKT 238 (588)
T COG1155 159 WIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKARPVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKT 238 (588)
T ss_pred EEecCCCceeeEEEEEEecCCCeEEEEEEEeccccCCccccccCCCCCcccccceeehhhcccccCccccccCCCCCCcE
Confidence 99999999999999999987779999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHH
Q psy13480 256 VISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYF 335 (615)
Q Consensus 256 ~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyf 335 (615)
|+||++|||+|+|+|||++||||||||+|++.+||+|+||.+| .++|+||++||||||||+|+||+|+|||+||||||
T Consensus 239 V~qh~laK~sdadiVVyigCGERGNEmtevL~eFPeL~Dp~tg--~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY~ 316 (588)
T COG1155 239 VSQHTLSKLADGDIVIYVGCGERGNEMTEVLQEFPELKDPNTG--QPLMDRTVLIANTSNMPVAAREASIYTGITIAEYY 316 (588)
T ss_pred ehhhhhhhhccCCEEEEEecCCccchHHHHHHhCccccCCCCC--CcccceeeEeecCccchHHHhhhhhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999 69999999999999999999999999999999999
Q ss_pred HhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCCCC
Q psy13480 336 RDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDF 415 (615)
Q Consensus 336 rd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD~ 415 (615)
|||||||++|+|||||||||+||||+||||||+++|||+||.|+||+||||||++++++++++.||+|++++||||||||
T Consensus 317 RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~gaVSPpGGdf 396 (588)
T COG1155 317 RDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAVSPPGGDF 396 (588)
T ss_pred HhhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHhcCeeeecCCCcceEEEEEecCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhcc-CcchHHHHHHHHHHHHhHHHHHHHHHHh
Q psy13480 416 SDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLV 494 (615)
Q Consensus 416 s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~~~el~~i~~~~ 494 (615)
|+||+++|++|+..||.||++||+++|||||||+.|||.|.+.+.+||+++ +++|.+++.+++++|+++.+|+++++++
T Consensus 397 SEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqeiv~lV 476 (588)
T COG1155 397 SEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQEIVQLV 476 (588)
T ss_pred CcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987 7999999999999999999999999999
Q ss_pred cCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHHHHHhhhhH
Q psy13480 495 GKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVESTAQSENKITWSVIRDSMSN 574 (615)
Q Consensus 495 g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fyd~a~~ai~~g~~~~~~i~~~~i~~~~~~ 574 (615)
|++++|+.|+.+++++++|+++|||||+|+++|.|||+.||+.||+.|+.||+.+.++++.|++++ .|.+ .+
T Consensus 477 G~eal~e~~~~il~va~~ire~fLqQnafd~vD~~~~~~kq~~mm~~i~~~~~~~~~a~d~g~~~~------ei~~--~~ 548 (588)
T COG1155 477 GYDALPEKEKSILDVARIIREDFLQQNAFDEIDAYCSLRKQYLMLKAIMEINDYQSKAIDSGVTMD------NLAS--LP 548 (588)
T ss_pred CccccchHHHHHHHHHHHHHHHHHhhcccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHcCccHH------HHhc--cc
Confidence 999999999999999999999999999999999999999999999999999999999999998873 4444 38
Q ss_pred HHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhc
Q psy13480 575 ILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRNLE 614 (615)
Q Consensus 575 ~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f~~l~ 614 (615)
+.+++.+|||... .+.+.++.+.++++.++++..|..+.
T Consensus 549 v~~~~~~~k~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 587 (588)
T COG1155 549 VREKLSRMKIVPE-DQVESYYSDLLEEIHKEYTNFIGEKN 587 (588)
T ss_pred chHHHhhhccccc-hhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 8889999999622 11222345677778888888887664
No 4
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=7.2e-175 Score=1433.89 Aligned_cols=577 Identities=54% Similarity=0.974 Sum_probs=557.5
Q ss_pred eeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCcccccc
Q psy13480 17 FGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGS 96 (615)
Q Consensus 17 ~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgLLGr 96 (615)
.|+|.+|+||+|+++|+.+++|||+|+|++++++||||++++|.++|||||+|+||++|++|++||+||+|+||||||||
T Consensus 1 ~G~I~~V~Gpvv~a~g~~~~~~gE~v~v~~~~l~gEVi~~~~d~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpglLGr 80 (578)
T TIGR01043 1 KGRIIRVSGPLVVADGMKGAQMYEVVKVGEEGLIGEIIRIEGDKAFIQVYEETSGIKPGEPVVGTGAPLSVELGPGLLGS 80 (578)
T ss_pred CCEEEEEECCEEEEecCCCCCcCCEEEECCCcEEEEEEEEcCCeEEEEECCCCCCCCCCCEEEECCCccEEEcCHHHhcc
Confidence 38999999999999999889999999998778999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCcceeE
Q psy13480 97 IFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTY 176 (615)
Q Consensus 97 I~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g~v~~ 176 (615)
||||+|||||++.+.++ .||+||+++++||++++|+|+| .+|+||.|++||++|+|+||.+++||||+||+++|+|+|
T Consensus 81 V~DgigrPLd~~~~~~g-~~i~rg~~~~~l~~~~~w~f~p-~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~ 158 (578)
T TIGR01043 81 IYDGVQRPLDVLKEKTG-DFIARGVDAPGLDRDKKWHFKP-TVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVE 158 (578)
T ss_pred eeccCCccccCcccccc-cccccCccCCCcCccccccccc-ccccCccccCCceEEEEecccceeeeeecCCCCcceEEE
Confidence 99999999999987664 6999999999999999999999 799999999999999999999999999999999999999
Q ss_pred ecCCCCccccceEEEEeecCcceeeeeecccccCCCCCcccCCCCCCccccceeeeccccccccCceeeccCCCCCCcch
Q psy13480 177 IAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256 (615)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~ 256 (615)
|+++|+|||+|+|++++.+|+ ++++|+|+||||.|||+.+|+++++||.||||+||+||||+||||+||||+||||||+
T Consensus 159 i~~~g~~~~~~~v~~~~~~g~-~~~~~~~~wPvr~p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GKT~ 237 (578)
T TIGR01043 159 IAEEGDYTVEDTIAVVDTDGD-EEIKMYQKWPVRIPRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTV 237 (578)
T ss_pred eccCCCceeeeeEEEEecCCc-eeeeeeeecccccCCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCHHH
Confidence 999999999999999998777 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHH
Q psy13480 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFR 336 (615)
Q Consensus 257 l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfr 336 (615)
|+||||||+++|+|||++||||||||+||+++||+|+||++| .++|+|||||||||||||++|++|+|||+|||||||
T Consensus 238 l~~~lak~~~adivVyvg~GERG~E~~e~le~f~~l~dp~~g--~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiAEYfR 315 (578)
T TIGR01043 238 TQHQLAKWSDADIVVYIGCGERGNEMTDVLEEFPELKDPKTG--KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFR 315 (578)
T ss_pred HHHHHHhcCCCCEEEEEEeccChHHHHHHHHHhHhhcccccc--cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 699999999999999999999999999999999999
Q ss_pred hCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCCCCC
Q psy13480 337 DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFS 416 (615)
Q Consensus 337 d~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD~s 416 (615)
|||||||||+|||||||+|+||||+++||||+++||||||+|+||+||||||+++|+++++++||||+|++|+|||||||
T Consensus 316 D~G~~Vllm~DS~sR~AeAlREIs~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~~~r~GSIT~i~aVs~~ggD~s 395 (578)
T TIGR01043 316 DMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDFS 395 (578)
T ss_pred HCCCCEEEEecChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhhccccccCCCCCCccEeEEEEEECCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998777999999999999999999
Q ss_pred CchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhcc-CcchHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy13480 417 DPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495 (615)
Q Consensus 417 ~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~~~el~~i~~~~g 495 (615)
|||+|+|++|+||||+|||+||++||||||||+.|+|||++.+.+||+++ +++|.+++++++++|++|+|+++|++++|
T Consensus 396 dPVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~lL~~~~el~~iv~lvG 475 (578)
T TIGR01043 396 EPVTQNTLRIVKVFWALDADLAQRRHFPAINWLQSYSLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQEIVQLVG 475 (578)
T ss_pred ccHHHHHHHHhCcEEEeCHHHHhcCCCCCcCcccchhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999998 79999999999999999999999999999
Q ss_pred CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHHHHHhhhhHH
Q psy13480 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVESTAQSENKITWSVIRDSMSNI 575 (615)
Q Consensus 496 ~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fyd~a~~ai~~g~~~~~~i~~~~i~~~~~~~ 575 (615)
.+++++.|++++++|+.+++.|||||+|+++|+|||++||+.||++|+.||++|++|+++|+++ +.|++. ++
T Consensus 476 ~d~L~~~d~~il~~a~~i~e~FLqQ~~~~~~d~~~~~~k~~~~L~~i~~~~~~~~~~~~~~~~~------~~i~~~--~~ 547 (578)
T TIGR01043 476 PDALPERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILRAIMNFYDEAMEALERGVPV------EEILKL--EV 547 (578)
T ss_pred CCCCCHHHHHHHHHhHHHHHhhCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCH------HHHhcc--hH
Confidence 9999999999999999999999999999999999999999999999999999999999999988 466655 78
Q ss_pred HHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy13480 576 LYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFR 611 (615)
Q Consensus 576 ~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f~ 611 (615)
+++|.||||..+ +++ .++|+++.++|+++|+
T Consensus 548 ~~~~~~~k~~~~----~~~-~~~~~~~~~~~~~~~~ 578 (578)
T TIGR01043 548 KEEIGRMKYEPD----NDI-LAKIDEILEKIEKEFK 578 (578)
T ss_pred HHHHHhccCCCc----hhH-HHHHHHHHHHHHHhhC
Confidence 999999999622 233 3788999999999884
No 5
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=4.5e-173 Score=1421.41 Aligned_cols=580 Identities=55% Similarity=0.969 Sum_probs=559.2
Q ss_pred eeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCccccc
Q psy13480 16 RFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILG 95 (615)
Q Consensus 16 ~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgLLG 95 (615)
..|+|.+|+||+|+++|+.+++|||+|+|++++++||||++++|.++|||||+|+||++|++|++||+||+|+|||||||
T Consensus 3 ~~G~I~~V~Gpvv~~~~~~~~~~~E~v~v~~~~l~gEVi~~~~d~a~iqv~e~T~Gl~~G~~V~~tg~plsv~lGpglLG 82 (586)
T PRK04192 3 TKGKIVRVSGPLVVAEGMGGARMYEVVRVGEEGLIGEIIRIEGDKATIQVYEETSGIKPGEPVEFTGEPLSVELGPGLLG 82 (586)
T ss_pred ceeEEEEEECcEEEEEeCCCCCccCEEEECCCcEEEEEEEEeCCceEEEEecCCcCCCCCCEEEeCCCccEEEcCHHhcC
Confidence 57999999999999999988999999999878899999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCccee
Q psy13480 96 SIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVT 175 (615)
Q Consensus 96 rI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g~v~ 175 (615)
|||||+|||||++++.. +.||+||+.+++||++++|+|+| .+|+||.|++||++|+|+|+.+|+|||||||+.+|+++
T Consensus 83 rv~Dg~grPLd~~~~~~-~~~i~rG~~~~~l~~~~~w~f~p-~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~ 160 (586)
T PRK04192 83 SIFDGIQRPLDELAEKS-GDFLERGVYVPALDREKKWEFTP-TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVK 160 (586)
T ss_pred CeecCCCCcccccchhc-ccccccCCCCCCCCcccccceec-ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEE
Confidence 99999999999998877 57999999999999999999999 79999999999999999999999999999999999999
Q ss_pred EecCCCCccccceEEEEee-cCcceeeeeecccccCCCCCcccCCCCCCccccceeeeccccccccCceeeccCCCCCCc
Q psy13480 176 YIAPAGNYKVDEVVLETEF-DGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGK 254 (615)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GK 254 (615)
+|+++|+|||+|+|+++++ +|+.++++|+|+||||.+||..+|+++++||.||||+||+||||+||||+||||+|||||
T Consensus 161 ~i~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G~GK 240 (586)
T PRK04192 161 EIVSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPYKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGK 240 (586)
T ss_pred EEccCCCceeeeEEEEEEccCCceeeeccccccccccCCcccccCCCCCccccCchhhhcccccccCCeEEEecCCCCCH
Confidence 9999999999999999997 677899999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHH
Q psy13480 255 TVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEY 334 (615)
Q Consensus 255 t~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEy 334 (615)
|+|+||||||+++|+|||++||||||||+||+++||+|+||++| .++|+|||||+|||||||++|++|+|||+|+|||
T Consensus 241 Tvl~~~iak~a~adivVyvg~GERg~E~~e~l~ef~~l~dp~~g--~~~m~RTvlVanTSn~Pv~aR~~s~ytgiTiAEY 318 (586)
T PRK04192 241 TVTQHQLAKWADADIVIYVGCGERGNEMTEVLEEFPELIDPKTG--RPLMERTVLIANTSNMPVAAREASIYTGITIAEY 318 (586)
T ss_pred HHHHHHHHhcCCCCEEEEEEcCcChHHHHHHHHHHHhhcccccc--cccceeEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 6999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCCC
Q psy13480 335 FRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGD 414 (615)
Q Consensus 335 frd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD 414 (615)
|||||||||||+|||||||+|+||||+++||||+++||||||+|+||+||||||+++|+++ .+||||+|++|||||||
T Consensus 319 fRd~G~~Vllm~DStSR~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERAG~v~~~~~--~~GSIT~i~aVs~pggD 396 (586)
T PRK04192 319 YRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGG--EEGSVTIIGAVSPPGGD 396 (586)
T ss_pred HHHCCCCEEEEecChHHHHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhhcccccCCC--CCcceEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999884 48999999999999999
Q ss_pred CCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhcc-CcchHHHHHHHHHHHHhHHHHHHHHHH
Q psy13480 415 FSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQL 493 (615)
Q Consensus 415 ~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~~~el~~i~~~ 493 (615)
|+|||||+|++|+||||+|||+||++||||||||+.|+|||++.+.+||.++ .++|.+++++++++|++|+|+++|+++
T Consensus 397 ~sePVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~el~eiv~l 476 (586)
T PRK04192 397 FSEPVTQNTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVDPDWRELRDEAMDLLQREAELQEIVRL 476 (586)
T ss_pred CCcchHHHHHHHhCceEEEcHHHHhCCcCCccCCccchhhhhhcccchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 799999999999999999999999999
Q ss_pred hcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHHHHHhhhh
Q psy13480 494 VGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVESTAQSENKITWSVIRDSMS 573 (615)
Q Consensus 494 ~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fyd~a~~ai~~g~~~~~~i~~~~i~~~~~ 573 (615)
+|.++||++|+++|++|++|++.||+||+|+++|.|||++||+.||+.|+.||+.|++++++|+++ ..|.+.
T Consensus 477 vG~d~Ls~~d~~~l~~a~~i~~~fL~Q~~f~~~d~~~~l~k~~~~l~~i~~~~~~~~~~~~~~~~~------~~~~~~-- 548 (586)
T PRK04192 477 VGPDALPEEDRLILEVARLIREDFLQQNAFDPVDTYCPPEKQYEMLKLILTFYDEAFKALEKGVPV------SEILEL-- 548 (586)
T ss_pred hCcccCCHHHHHHHHHHHHHHHhhcCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHCCCCH------HHHhcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999988 344443
Q ss_pred HHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhc
Q psy13480 574 NILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRNLE 614 (615)
Q Consensus 574 ~~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f~~l~ 614 (615)
+++.+|.||||..+ ++ ..++++++.++|+++|++|.
T Consensus 549 ~~~~~~~~~k~~~~----~~-~~~~~~~~~~~~~~~~~~~~ 584 (586)
T PRK04192 549 EVRDRIARLKYIPE----NE-YLEKIDEIFEKLEEELEELI 584 (586)
T ss_pred hHHHHHHHhcCCCh----hh-HHHHHHHHHHHHHHHHHHHh
Confidence 88889999999622 22 24788999999999999885
No 6
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=3.3e-158 Score=1376.49 Aligned_cols=582 Identities=53% Similarity=0.938 Sum_probs=551.7
Q ss_pred ceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCcccc
Q psy13480 15 GRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGIL 94 (615)
Q Consensus 15 ~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgLL 94 (615)
..+|+|.+|+||+|+|+|+.+++|||+|.|++.++.||||++++|.++|||||+|+||++|++|++||++++|+|||+||
T Consensus 2 ~~~G~V~~V~G~lv~a~g~~~~~iGE~v~I~~~~l~gEVIg~~~d~a~iq~~e~t~Gl~~G~~V~~tg~~l~V~lG~~LL 81 (1017)
T PRK14698 2 PAKGRIIRVTGPLVIADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGLKPGEPVEGTGSSLSVELGPGLL 81 (1017)
T ss_pred CCceEEEEEEcCEEEEecCcCCCCCCEEEECCCcEEEEEEEEeCCEEEEEECCCCCCCCCCCEEEEcCCcceeecCHHHh
Confidence 35799999999999999998899999999986669999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCcce
Q psy13480 95 GSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTV 174 (615)
Q Consensus 95 GrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g~v 174 (615)
||||||+||||+.+.+.+++ ||+||+++|||||+++|+|+| .+|+||.|++|||+|+|+||++|+||||+||+++|+|
T Consensus 82 GRV~DGlGrPL~~~~~~~~~-~i~~g~~~~~l~~~~~w~f~p-~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~ 159 (1017)
T PRK14698 82 TSIYDGIQRPLEVIREKSGD-FIARGISAPALPRDKKWHFIP-KVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEI 159 (1017)
T ss_pred hcccCCCCChHHHHHHHhcc-cccCCCCCCCCCCCCeeeeEe-eeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEE
Confidence 99999999999999888865 999999999999999999999 6999999999999999999999999999999999999
Q ss_pred eEecCCCCccccceEEEEee-cCcceeeeeecccccCCCCCcccCCCCCCccccceeeeccccccccCceeeccCCCCCC
Q psy13480 175 TYIAPAGNYKVDEVVLETEF-DGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCG 253 (615)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~G 253 (615)
+||+++|+|||+|+|+++++ +|++++++|+|+||||.|||+.+|++++.||+|||||||+|||++|||++||+|+||||
T Consensus 160 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~wpvr~~r~~~~~~~~~~pl~tgqrv~d~~fp~~~ggt~~~~G~~G~G 239 (1017)
T PRK14698 160 VEIADEGEYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSG 239 (1017)
T ss_pred EEEcCCCCcceeeEEEEEEcCCCCEEEeeeEecCCCCCCCcccccCCCCcccccccchHhhhhhhhcCceeEeccCCCcC
Confidence 99999999999999999997 78789999999999999999999999999999999999999999999999999999999
Q ss_pred cch-----------------------------------------------------------------------------
Q psy13480 254 KTV----------------------------------------------------------------------------- 256 (615)
Q Consensus 254 Kt~----------------------------------------------------------------------------- 256 (615)
|++
T Consensus 240 KCV~~dt~V~l~~g~~i~i~elve~~~g~~~~~~~g~e~~~~i~~~~~v~~~~dgklv~~~~~~v~k~~~~~v~rikt~~ 319 (1017)
T PRK14698 240 KCVDGDTLILTKEFGLIKIKDLYEILDGKGKKTVEGNEEWTELEEPITLYGYKDGKIVEIKATHVYKGASAGMIEIKTRT 319 (1017)
T ss_pred cccCCcceEeecCCceeEeccceEeccCCcceeeeccceeeecccccceeeeccceEEEEeeeEEeecCCceeEEEEecC
Confidence 922
Q ss_pred --------------------------------------------------------------------------------
Q psy13480 257 -------------------------------------------------------------------------------- 256 (615)
Q Consensus 257 -------------------------------------------------------------------------------- 256 (615)
T Consensus 320 Gr~I~vT~~Hpflt~~v~~~G~~~~~~ka~eLk~GD~IavpR~vp~~~~v~~~~~~~~~~~~~l~lp~~~deeLA~lLGy 399 (1017)
T PRK14698 320 GRKIKVTPIHKLFTGRVTKDGLEIEEVMAKDIKKGDRIAVAKKIDGGERVKLNIRVDQKRGKKIKIPDVLDEELAEFLGY 399 (1017)
T ss_pred CcEEEEeecceeeeeccccCCcchhhhhhhhcCcCceEeecccccccccccccccchhcccccccCCcccCHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy13480 257 -------------------------------------------------------------------------------- 256 (615)
Q Consensus 257 -------------------------------------------------------------------------------- 256 (615)
T Consensus 400 liGDG~~~~~~v~i~n~deell~~i~~la~~~FG~~~~i~~~~~~~~l~i~sk~l~~~L~~LGl~g~k~a~~KrIPe~Vf 479 (1017)
T PRK14698 400 LIADGTLKPRTVAIYNNDESLLKRANELAMELFGIEGKIVKERTVKALLIHSKALVDFFKKLGIPGNKKARTWKVPKELL 479 (1017)
T ss_pred HhhCCcccccceeeccccHHHHHHHHHHHHHhcCCcceeecccccceeeechHHHHHHHHHhCCccccccccccCCHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy13480 257 -------------------------------------------------------------------------------- 256 (615)
Q Consensus 257 -------------------------------------------------------------------------------- 256 (615)
T Consensus 480 ~~~~e~i~aFLrGlfdaDG~v~~~~~~I~~sT~S~~Lae~L~~LLlrlGI~s~i~~k~~~~~~~Y~L~IsG~~nL~~lg~ 559 (1017)
T PRK14698 480 ISEPEVVKAFIKAYIACDGYYDEEKGEIEIVTASEEAAYGFSYLLAKLGIYAIIREKIIGDKEYYRVVISGEANLEKLGI 559 (1017)
T ss_pred hCCHHHHHHHHHHeeccCCccccccceEEEEeccHHHHHHHHHHHHHCCceEEEeeecccCCceEEEEEechhhHHHhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy13480 257 -------------------------------------------------------------------------------- 256 (615)
Q Consensus 257 -------------------------------------------------------------------------------- 256 (615)
T Consensus 560 ~~~~~~~~n~D~iP~~v~~~~~a~~r~~~~l~~~g~~~~~~~~~~~~sr~~~~~~~~~~~~~~l~~~~~~di~wD~vv~I 639 (1017)
T PRK14698 560 EREARGYTSIDIVPVDVEEIYEALGRPYAELKKAGIEIHNYLSGENMSYEMFRKFAKFVGLEEIAENHLQHILFDEIVEI 639 (1017)
T ss_pred ccccccCCcccccchhHHHHHHhhccchhhhhhcccccccccccccccHHHHHhHHhhhchHHHHhhhcccccceeeEEe
Confidence
Q ss_pred --------------------------------hhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCc
Q psy13480 257 --------------------------------ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIM 304 (615)
Q Consensus 257 --------------------------------l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m 304 (615)
.|||||||++||+|||++||||||||+||+++||+|+||++| .++|
T Consensus 640 e~~g~~~~VyDlTV~~hNFla~~~~~~~hns~~q~~la~~~~adi~V~~~iGERg~Ev~e~l~~~~~l~~~~~g--~~~m 717 (1017)
T PRK14698 640 NYISEGQEVYDITTETHNFIGGNMPTLLHNTVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLM 717 (1017)
T ss_pred eccCccceEEeeeccchhhhhhhHHHHHHHHHHHHHHhhccCCCEEEEEeeccchHHHHHHHHHHHhhcccccC--cccc
Confidence 256789999999999999999999999999999999999998 6999
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHH
Q psy13480 305 KRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFY 384 (615)
Q Consensus 305 ~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ 384 (615)
+|||||+|||||||++|++|+|+|+||||||||||+|||||+|||||||+|+||||+++||||+++||||||||+||+||
T Consensus 718 ~rtvlv~~ts~~p~~~R~~s~y~a~tiAEyfrd~G~~Vll~~Ds~sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ 797 (1017)
T PRK14698 718 ERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFY 797 (1017)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccchHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccCCCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhh
Q psy13480 385 ERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYD 464 (615)
Q Consensus 385 ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~ 464 (615)
||||+++|||+++++||||+|++|+||||||+||||++|++|+||||+|||+||++||||||||+.|+|||++.+.+||.
T Consensus 798 ERaG~~~~l~~~~~~GSIT~i~~V~~~g~D~s~Pv~~~~~~i~dg~i~L~~~La~~g~~PAId~l~S~Sr~~~~~~~~~~ 877 (1017)
T PRK14698 798 ERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWH 877 (1017)
T ss_pred HhccCCcccCCCCCCcceEEEEEEECCCCCCCCcHHHHHHHHhCcEEecCHHHHhCCCCCCcCcccchhhhcccccchhc
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CcchHHHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 465 KN-HPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 465 ~~-~~~~~~~~~~~~~~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
++ .++|.+++++++++|++|+|+++|++++|.++||+.|+++++++++|++.||||++|+++|++||++||+.||+.|+
T Consensus 878 ~~~~~~~~~~~~~~~~~l~~~~el~~~i~l~g~~~l~~~d~~~~~~~~~i~e~fL~Q~~~~~~d~~~~~~~~~~~l~~i~ 957 (1017)
T PRK14698 878 KNVDPEWKAMRDKAMELLQKEAELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLL 957 (1017)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhHHHHhccCCCCCCCccccCCCHHHHHHHHHHHH
Confidence 98 79999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccchhhhhHHHHHhhhhHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q psy13480 544 AFYDMSRHAVESTAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRN 612 (615)
Q Consensus 544 ~fyd~a~~ai~~g~~~~~~i~~~~i~~~~~~~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f~~ 612 (615)
.|||.|++|++.|+++ +.|.+. +++.+|.||||. | + .+++.+.++++.+++++.|++
T Consensus 958 ~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~~ 1014 (1017)
T PRK14698 958 NFYDKTMDAISRGVPL------EEIAKL--PVREEIGRMKFE-P--D-IEKIKALIDKTNEQFDELFKK 1014 (1017)
T ss_pred HHHHHHHHHHHcCCCH------HHHhcc--cHHHHHHhhcCC-c--c-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 455554 688999999995 3 2 334444445555555555443
No 7
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=3.5e-131 Score=1034.14 Aligned_cols=369 Identities=78% Similarity=1.322 Sum_probs=362.7
Q ss_pred cceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeee
Q psy13480 84 PLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHK 163 (615)
Q Consensus 84 ~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~ 163 (615)
||||+|||||||+||||+||||+.+.+...+.||+||+++++||++|+|+|+| .+|+||.|++||++|+|+||.+++||
T Consensus 1 ~lsveLgPGll~~i~DGiqrpL~~i~~~~~~~fi~rg~~~~~ld~~~~w~f~p-~~k~gd~v~~gd~~g~v~e~~~~~h~ 79 (369)
T cd01134 1 PLSVELGPGLLGSIYDGIQRPLDKIAEITKGIFIPRGVNVPALDRDKKWDFKP-LVKVGDHVTGGDILGTVPENSLIEHK 79 (369)
T ss_pred CcceEeccchhccccCcccCCHHHHHHhhcCCcccCCCCCCCCCCCCeeeeEe-ccccCCCccCCCEEEEEecCCceeeE
Confidence 79999999999999999999999998866678999999999999999999999 78999999999999999999999999
Q ss_pred ecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCCcccCCCCCCccccceeeeccccccccCce
Q psy13480 164 MIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGT 243 (615)
Q Consensus 164 i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~ 243 (615)
|||||+.+|+|++|+++|+||++|+|++++++|++++++|.|+|||+.+||..+|+++++||.||||+||+||||+||||
T Consensus 80 imvp~~~~g~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~Pv~~~~P~~~r~~~~~pL~TGirvID~l~Pi~kGqr 159 (369)
T cd01134 80 IMVPPRVRGTVTYIAPAGDYTVDDVILEVEFDGKKEEITMVQKWPVRQPRPVKEKLPPNEPLLTGQRVLDTLFPVVKGGT 159 (369)
T ss_pred EeCCCCCCeEEEEEecCCCeeEEEEEEEEEeCCeEeccccceeeecccCCCccccCCCCCchhccchhhhccccccCCCE
Confidence 99999999999999999999999999999998989999999999999999988999999999999999999999999999
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHH
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREA 323 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~ 323 (615)
++|||+||+|||+|+++|+||+++|+|||++||||+|||+||+++||+|+||.+| .++|+|||+|+||||||+++|++
T Consensus 160 ~~I~G~~G~GKT~L~~~Iak~~~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~--~~~m~rtvlV~nts~~p~~~R~~ 237 (369)
T cd01134 160 AAIPGPFGCGKTVIQQSLSKYSNSDIVIYVGCGERGNEMTEVLEEFPELTDPVTG--EPLMKRTVLIANTSNMPVAAREA 237 (369)
T ss_pred EEEECCCCCChHHHHHHHHhCCCCCEEEEEEeCCChHHHHHHHHHHHhhcccccc--CCccceEEEEEECCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 69999999999999999999999
Q ss_pred HHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceE
Q psy13480 324 SIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVS 403 (615)
Q Consensus 324 s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT 403 (615)
++|+|+|+||||||||+|||||+||+||||+|+||||+++||||+++|||+||+|+||+||||||+++|+|+++++||||
T Consensus 238 s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSIT 317 (369)
T cd01134 238 SIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVT 317 (369)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccch
Q psy13480 404 IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKY 455 (615)
Q Consensus 404 ~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~ 455 (615)
+|++|++|||||+|||+++|++|+||||+|||+||++||||||||+.|+|||
T Consensus 318 ~i~~V~~~g~D~sdPV~~~t~~i~dg~i~Lsr~La~~g~yPAId~l~S~Sry 369 (369)
T cd01134 318 IVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred EEEEEEccCCCcCcchHHhhHhhcceEEEECHHHHhCCCCCCcCCcccccCC
Confidence 9999999999999999999999999999999999999999999999999997
No 8
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.4e-112 Score=929.19 Aligned_cols=420 Identities=25% Similarity=0.401 Sum_probs=388.6
Q ss_pred ceeeEEEEEECceEEEEeCCCCcceeEEEEc--Cc-eeEEEEEEEeCCeEEEEEecCCCCCC-CCCeEEEcCCcceeecC
Q psy13480 15 GRFGFVYAVSGPVVTAEKMSGSAMYELVRVG--YF-ELVGEIIRLEGDMATIQVYEETSGVT-VGDPVLRTGKPLSVELG 90 (615)
Q Consensus 15 ~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg--~~-~l~GEVI~i~~d~a~iqvye~t~Gl~-~G~~V~~tg~~lsv~lG 90 (615)
..||+|.+|.|++|+++|+.++++||+|.+. ++ .+.|||+++++|.+.+|+|++|+||+ +|++|.+||++++|++|
T Consensus 2 ~~yg~V~~i~g~~v~v~g~~~~~~ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~V~vg 81 (460)
T PRK04196 2 KEYRTVSEIKGPLLFVEGVEGVAYGEIVEIELPNGEKRRGQVLEVSEDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVS 81 (460)
T ss_pred ceeEEEEEEECcEEEEeccCCCCCCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEccCCCCCCCCCCEEEeCCCccEEEcC
Confidence 4789999999999999999899999999995 23 47999999999999999999999999 89999999999999999
Q ss_pred cccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCC
Q psy13480 91 PGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKA 170 (615)
Q Consensus 91 pgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~ 170 (615)
++|||||||++|||||+.++....
T Consensus 82 ~~lLGRVvD~~G~PlD~~~~i~~~-------------------------------------------------------- 105 (460)
T PRK04196 82 EDMLGRIFDGLGRPIDGGPEIIPE-------------------------------------------------------- 105 (460)
T ss_pred cccccCEECccCCCccCCCCCCCC--------------------------------------------------------
Confidence 999999999999999987543210
Q ss_pred CcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCceeeccCC
Q psy13480 171 KGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGA 249 (615)
Q Consensus 171 ~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~ 249 (615)
++||+..+. ++.+|.++++||.||||+||+|+|||+|||++|||+
T Consensus 106 ----------------------------------~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg 151 (460)
T PRK04196 106 ----------------------------------KRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSG 151 (460)
T ss_pred ----------------------------------ccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCC
Confidence 023333332 367788999999999999999999999999999999
Q ss_pred CCCCcchhhHHhhhcCCCC------EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHH
Q psy13480 250 FGCGKTVISQALSKYSNSD------VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREA 323 (615)
Q Consensus 250 ~G~GKt~l~~~la~~~~ad------viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~ 323 (615)
+|+|||+|+++|++++++| +|||++||||+|||.||+++|.+ .++|+|||+|+||||+|+++|++
T Consensus 152 ~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~---------~~~l~rtvvV~atsd~p~~~R~~ 222 (460)
T PRK04196 152 SGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEE---------TGALERSVVFLNLADDPAIERIL 222 (460)
T ss_pred CCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHh---------cCCcceEEEEEEcCCCCHHHHHH
Confidence 9999999999999999999 99999999999999999999964 57899999999999999999999
Q ss_pred HHHHHhhHHHHHH-hCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCce
Q psy13480 324 SIYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSV 402 (615)
Q Consensus 324 s~~tg~tiAEyfr-d~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSI 402 (615)
++|+|+||||||| |||+|||||+||+||||+|+||||+++||||+++|||||+|+.||+||||||++. .++|||
T Consensus 223 a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~-----~~~GSI 297 (460)
T PRK04196 223 TPRMALTAAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIK-----GKKGSI 297 (460)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCC-----CCCeee
Confidence 9999999999999 7999999999999999999999999999999999999999999999999999974 358999
Q ss_pred EEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhh-hhhccCcchHHHHHHHHHHH
Q psy13480 403 SIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDD-FYDKNHPEFVPLRTKVKEIL 481 (615)
Q Consensus 403 T~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~-~~~~~~~~~~~~~~~~~~~L 481 (615)
|+|++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.. |+.. ++|++++.+++..|
T Consensus 298 Tai~~V~~~gdD~~dpI~d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~~~~~~~~~~~--~~~~~~a~~l~~~y 375 (460)
T PRK04196 298 TQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGKTR--EDHKDVANQLYAAY 375 (460)
T ss_pred EEEEEEEcCCCCCCCchhhhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhccccCCcccCc--HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988633 4332 78999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHH
Q psy13480 482 QEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 482 ~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~ 544 (615)
+++++|+++++++|.+.++++++.++.+|+++++.||+|++ ++.+++++|+..|+.++.
T Consensus 376 ~~~~~l~~~~~~~G~~~l~d~~~~~~~~~~~~~~~fL~Q~~----~~~~~~~~~~~~l~~~l~ 434 (460)
T PRK04196 376 ARGKDLRELAAIVGEEALSERDRKYLKFADAFEREFVNQGF----DENRSIEETLDLGWELLS 434 (460)
T ss_pred HHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHcCCCC----CCCcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999889999997 467999999999988775
No 9
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=7.9e-112 Score=921.58 Aligned_cols=419 Identities=24% Similarity=0.387 Sum_probs=384.8
Q ss_pred eeeEEEEEECceEEEEeCCCCcceeEEEEc--Cc-eeEEEEEEEeCCeEEEEEecCCCCCCCCCe-EEEcCCcceeecCc
Q psy13480 16 RFGFVYAVSGPVVTAEKMSGSAMYELVRVG--YF-ELVGEIIRLEGDMATIQVYEETSGVTVGDP-VLRTGKPLSVELGP 91 (615)
Q Consensus 16 ~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg--~~-~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~-V~~tg~~lsv~lGp 91 (615)
.|++|.+|.|++|+++|+.++++||+|.+. ++ .+.|||+++++|.+.+|+|++|+||++|++ |.+||++++|++|+
T Consensus 1 ~y~~v~~i~g~iv~v~g~~~~~~ge~~~i~~~~~~~~~geVv~~~~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~vg~ 80 (458)
T TIGR01041 1 EYSTITEIAGPLVFVEGVEPVAYNEIVEIETPDGEKRRGQVLDSSEGLAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSE 80 (458)
T ss_pred CccEEEEEEccEEEEEccCCCCcCCEEEEEcCCCcEEEEEEEEEECCEEEEEEecCCcCcCCCCcEEEECCCceEEEcCh
Confidence 478999999999999999899999999994 23 378999999999999999999999999987 99999999999999
Q ss_pred ccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCC
Q psy13480 92 GILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAK 171 (615)
Q Consensus 92 gLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~ 171 (615)
+|||||||++|||||+.+.... +.
T Consensus 81 ~lLGRViD~~G~plD~~~~~~~---------------~~----------------------------------------- 104 (458)
T TIGR01041 81 DMLGRILNGSGEPIDGGPEIVP---------------DE----------------------------------------- 104 (458)
T ss_pred hhccCEEccCCcccCCCCCCCc---------------cc-----------------------------------------
Confidence 9999999999999998643211 01
Q ss_pred cceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccCCC
Q psy13480 172 GTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAF 250 (615)
Q Consensus 172 g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~ 250 (615)
+||+..+.| +.+|.++++||.||||+||+|+||++|||++|||++
T Consensus 105 ----------------------------------~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~ 150 (458)
T TIGR01041 105 ----------------------------------RRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGS 150 (458)
T ss_pred ----------------------------------eeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCC
Confidence 234443332 567899999999999999999999999999999999
Q ss_pred CCCcchhhHHhhhcCCCC------EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHH
Q psy13480 251 GCGKTVISQALSKYSNSD------VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREAS 324 (615)
Q Consensus 251 G~GKt~l~~~la~~~~ad------viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s 324 (615)
|+|||+|++||++++++| +|||++||||+||+.||+++|.+ .++|+|||+|+||||+|+++|+++
T Consensus 151 G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~---------~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 151 GLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEE---------TGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHh---------cCCcceEEEEEECCCCCHHHHHHH
Confidence 999999999999999999 99999999999999999999853 578999999999999999999999
Q ss_pred HHHHhhHHHHHH-hCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceE
Q psy13480 325 IYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVS 403 (615)
Q Consensus 325 ~~tg~tiAEyfr-d~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT 403 (615)
+|+|+||||||| |+|+|||||+||+||||+|+||||+++||||+++|||||+|+.||+||||||+++ .++||||
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~~LlERaG~~~-----~~~GSIT 296 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVK-----GKKGSIT 296 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccCC-----CCCcceE
Confidence 999999999999 7999999999999999999999999999999999999999999999999999964 3589999
Q ss_pred EEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcch-hhhhhccCcchHHHHHHHHHHHH
Q psy13480 404 IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRAL-DDFYDKNHPEFVPLRTKVKEILQ 482 (615)
Q Consensus 404 ~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~-~~~~~~~~~~~~~~~~~~~~~L~ 482 (615)
+|++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.. .+|+. .++|++++.+++..|+
T Consensus 297 ai~tV~~~gdD~~dPI~d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~~~ig~~~~--~~~~~~~a~~l~~~y~ 374 (458)
T TIGR01041 297 QMPILTMPGDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKT--REDHKDVSDQLYAAYA 374 (458)
T ss_pred EEEEEEcCCCCCCCchHHhhhhhcceEEEEcHHHHhCCCCCccCCccchhhccccccccccc--CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999872 22221 2789999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHH
Q psy13480 483 EEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 483 ~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~ 544 (615)
++++|+++++++|.+.+++.++.++.+|+.++++||+|+. ++.+++++++..|+.++.
T Consensus 375 ~~~~L~~i~~~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~----~~~~~~~~~~~~l~~~l~ 432 (458)
T TIGR01041 375 EGRDLRGLVAIVGEEALSERDRKYLKFADLFERRFVRQGR----NENRSIEETLDIGWELLS 432 (458)
T ss_pred HHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHhcCCCC----CCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999997779999997 567999999999988775
No 10
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=7.2e-110 Score=903.93 Aligned_cols=415 Identities=29% Similarity=0.488 Sum_probs=385.5
Q ss_pred eeEEEEEECceEEEEeCC--CCcceeEEEE--c-CceeEEEEEE-EeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecC
Q psy13480 17 FGFVYAVSGPVVTAEKMS--GSAMYELVRV--G-YFELVGEIIR-LEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELG 90 (615)
Q Consensus 17 ~G~I~~I~Gpvv~a~g~~--~~~~~E~v~v--g-~~~l~GEVI~-i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lG 90 (615)
+|+|.+|.|++|+++|+. .+++||+|.+ . ++++.||||+ ++++.+.+++|++|+||++|++|++||++++|++|
T Consensus 3 ~G~V~~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~vg 82 (463)
T PRK09280 3 TGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVPVG 82 (463)
T ss_pred ccEEEEEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEEcC
Confidence 599999999999999972 2499999999 2 5679999999 99999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCC
Q psy13480 91 PGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKA 170 (615)
Q Consensus 91 pgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~ 170 (615)
++|||||||++|||||+.++...
T Consensus 83 ~~lLGRViD~~G~pld~~~~~~~--------------------------------------------------------- 105 (463)
T PRK09280 83 KATLGRIFNVLGEPIDEKGPIGA--------------------------------------------------------- 105 (463)
T ss_pred hhhcCCEEeeeccccCCCCCcCc---------------------------------------------------------
Confidence 99999999999999997642210
Q ss_pred CcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccCC
Q psy13480 171 KGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGA 249 (615)
Q Consensus 171 ~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~ 249 (615)
.++||++.++| +.+|.++++||.||||+||+|+|||+|||++|||+
T Consensus 106 ---------------------------------~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~ 152 (463)
T PRK09280 106 ---------------------------------EERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGG 152 (463)
T ss_pred ---------------------------------cceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecC
Confidence 12578887775 78999999999999999999999999999999999
Q ss_pred CCCCcchhhHHhhhcCCCC---EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHH
Q psy13480 250 FGCGKTVISQALSKYSNSD---VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIY 326 (615)
Q Consensus 250 ~G~GKt~l~~~la~~~~ad---viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~ 326 (615)
+|+|||+|+++++++..+| +|||++||||+|||+||+++|.+ .+.|+|||+|+||||+||.+|++++|
T Consensus 153 ~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~---------~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 153 AGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKE---------SGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHh---------cCCcceeEEEEECCCCCHHHHHHHHH
Confidence 9999999999999887766 99999999999999999999964 57899999999999999999999999
Q ss_pred HHhhHHHHHHh-CCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEE
Q psy13480 327 TGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIV 405 (615)
Q Consensus 327 tg~tiAEyfrd-~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i 405 (615)
+|+|||||||| ||+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+ .++||||+|
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~-------~~~GSITai 296 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITS-------TKKGSITSV 296 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcC-------CCCCceeEE
Confidence 99999999999 9999999999999999999999999999999999999999999999999997 358999999
Q ss_pred EeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchh-cchhhhhhccCcchHHHHHHHHHHHHhH
Q psy13480 406 GAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYM-RALDDFYDKNHPEFVPLRTKVKEILQEE 484 (615)
Q Consensus 406 ~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 484 (615)
++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||++ ..+.+ ++|++++.+++++|++|
T Consensus 297 ~tVl~~gdD~~dPI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~------~~~~~~a~~~r~~la~y 370 (463)
T PRK09280 297 QAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLIVG------EEHYDVAREVQQILQRY 370 (463)
T ss_pred EEEECcCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCccCCccccccccccccCC------HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 45554 89999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCC------CCccCCHHHHHHHHHHHHH
Q psy13480 485 EDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSP------YDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 485 ~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~------~d~~~~~~kq~~~L~~I~~ 544 (615)
+|++++++++|...+++.++..+.+++.++ +||+|++|.. .++++++++++..|..|++
T Consensus 371 ~e~e~li~i~gy~~~sd~~d~ai~~~~~i~-~fL~Q~~~~~~~ft~~~~~~~~~~~~~~~l~~i~~ 435 (463)
T PRK09280 371 KELQDIIAILGMDELSEEDKLTVARARKIQ-RFLSQPFFVAEQFTGSPGKYVPLKDTIRGFKEILE 435 (463)
T ss_pred HHHHHHHHhhCCccCCHHHHHHHHhhHHHH-HhccCCcchhhcccCCCCcccCHHHHHHHHHHHhC
Confidence 999999999998888888999999999887 9999998653 3799999999999999875
No 11
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=6.6e-110 Score=880.00 Aligned_cols=418 Identities=29% Similarity=0.452 Sum_probs=384.0
Q ss_pred cccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCc----eeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcC
Q psy13480 7 KMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYF----ELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTG 82 (615)
Q Consensus 7 ~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~----~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg 82 (615)
++.+++....+|+|++|+|.++++.|+ .+++||+|.+... ...+|||+|+++++++++|++..|+.+|+.|..+|
T Consensus 15 ~~~~~~~~~~~G~v~~v~G~~lea~g~-~~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~~gv~~g~~V~~~~ 93 (441)
T COG1157 15 ALRNTDPYKRRGRLTRVTGLLLEAVGP-QARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPVEGVSPGAEVVPTG 93 (441)
T ss_pred hhccCCcceEEEEEEEEeeeEEEEecC-CCcccceEEEEecCCCCceeEEEEEEcCCeEEEeccCccccCCCCCEEEecC
Confidence 456667888999999999999999985 7999999998642 23999999999999999999999999999999999
Q ss_pred CcceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeee
Q psy13480 83 KPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKH 162 (615)
Q Consensus 83 ~~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h 162 (615)
++++|++|++|||||+||+|||||+.+..... .|
T Consensus 94 ~~~~v~~g~~lLGRVld~~G~plDg~~~~~~~----------------~~------------------------------ 127 (441)
T COG1157 94 RPLSVPVGDALLGRVLDGLGRPLDGGGLPDGT----------------ER------------------------------ 127 (441)
T ss_pred CccccccChhhhhhhhccCCCcCcCCCCCCCc----------------cc------------------------------
Confidence 99999999999999999999999985432210 11
Q ss_pred eecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccC
Q psy13480 163 KMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLG 241 (615)
Q Consensus 163 ~i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kG 241 (615)
.|+..++ +.+.|.++++||.||+|+||+|+|||+|
T Consensus 128 --------------------------------------------~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~G 163 (441)
T COG1157 128 --------------------------------------------RPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKG 163 (441)
T ss_pred --------------------------------------------ccccCCCCCchhcccccccccccceeeecccccccC
Confidence 1222222 2567888999999999999999999999
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHH
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R 321 (615)
||+|||+++|+|||||++||+++++||++|+++||||||||+||+++. +++..|+|||+|++|||.|+.+|
T Consensus 164 QRiGIFAgsGVGKStLLgMiar~t~aDv~ViaLIGERGREVrEFIE~~---------Lg~egl~rsViVvATSD~s~l~R 234 (441)
T COG1157 164 QRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEKD---------LGEEGLKRSVVVVATSDESALMR 234 (441)
T ss_pred ceeEEEecCCCcHHHHHHHHhccccCCEEEEEEeeccchhHHHHHHHh---------cchhhccceEEEEECCCCCHHHH
Confidence 999999999999999999999999999999999999999999999874 12566999999999999999999
Q ss_pred HHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCc
Q psy13480 322 EASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401 (615)
Q Consensus 322 ~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GS 401 (615)
..++++|+||||||||||+|||||+||+||||+|+|||++++||||+++||||++|+.|++|+||||+ ..+||
T Consensus 235 ~~aa~~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~-------~~~Gs 307 (441)
T COG1157 235 LKAAFTATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGN-------GDKGS 307 (441)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHHHhhcCC-------CCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 46899
Q ss_pred eEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHH
Q psy13480 402 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEIL 481 (615)
Q Consensus 402 IT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L 481 (615)
||+||||+++|||++|||+|++++|+||||+|||+||++|||||||++.|+||+|.++.+ ++|++++.++|++|
T Consensus 308 ITafYTVLveGDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i~~------~~h~~~a~~~r~ll 381 (441)
T COG1157 308 ITAFYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQIVS------EEHRKAARRLRQLL 381 (441)
T ss_pred EEEEEEEEeecCCCCCchhhhhhhhccceEEeeHhHHhcCCCCCcchHHHHHHHhhhcCC------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 89999999999999
Q ss_pred HhHHHHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 482 QEEEDLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 482 ~~~~el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
+.|+|.+++++++. .+++++.|+++-.+.. .++||+|+. +++|++++++++|+.++
T Consensus 382 s~y~e~edLi~iGaY~~G~D~~~D~Ai~~~p~--i~~fL~Q~~----~e~~~~~~t~~~L~~~~ 439 (441)
T COG1157 382 SRYEENEDLIRIGAYQKGSDPELDKAIKLYPK--IEQFLKQGI----DEKSSFEETLEQLEAIL 439 (441)
T ss_pred HHHHHHHHHHHhcCccCCCCHHHHHHHHhhHH--HHHHHcCCc----cccCCHHHHHHHHHHHh
Confidence 99999999999853 7999999999876665 569999984 89999999999999876
No 12
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=4.1e-109 Score=908.62 Aligned_cols=481 Identities=24% Similarity=0.332 Sum_probs=415.5
Q ss_pred cccccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCc
Q psy13480 5 LGKMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKP 84 (615)
Q Consensus 5 ~~~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ 84 (615)
++++......+.+|+|.+|.|++++++|+.++++||+|.+. +++.|||+++++|.+.+++|+++.||++|++|.+||++
T Consensus 15 i~~~~~~~~~~~~G~V~~v~g~ii~v~g~~~~~~ge~~~i~-~~~~g~Vi~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~ 93 (501)
T TIGR00962 15 IKNFEKDIEMEEVGTVVSVGDGIARVYGLENVMSGELIEFE-GGVQGIALNLEEDSVGAVIMGDYSNIREGSTVKRTGRI 93 (501)
T ss_pred HHhcCCcceeEEEEEEEEEeCCEEEEECCcCCCCCCEEEEC-CCeEEEEEEecCCeEEEEEecCCcCCCCCCeeEecCCc
Confidence 34455555567889999999999999999899999999996 45899999999999999999999999999999999999
Q ss_pred ceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeee
Q psy13480 85 LSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKM 164 (615)
Q Consensus 85 lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i 164 (615)
++||+|++|||||+|++|||||+.++....
T Consensus 94 ~~v~vg~~llGRV~d~~G~pld~~~~~~~~-------------------------------------------------- 123 (501)
T TIGR00962 94 LKVPVGDGLLGRVVNALGQPIDGKGPIDSD-------------------------------------------------- 123 (501)
T ss_pred cEEecChHhcCCEeCCCCCeeCCCCCcCCC--------------------------------------------------
Confidence 999999999999999999999987533210
Q ss_pred cCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCce
Q psy13480 165 IMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGGT 243 (615)
Q Consensus 165 ~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq~ 243 (615)
.+||+..+. ++.+|.++++||.||+|+||+|+|||+|||
T Consensus 124 ----------------------------------------~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrGQr 163 (501)
T TIGR00962 124 ----------------------------------------EFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQR 163 (501)
T ss_pred ----------------------------------------CceeeecCCCChhhcCCcCceeccCCceeeccCCcccCCE
Confidence 012333332 367899999999999999999999999999
Q ss_pred eeccCCCCCCcchh-hHHhhhcCCCCE-EEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHH
Q psy13480 244 TAIPGAFGCGKTVI-SQALSKYSNSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321 (615)
Q Consensus 244 ~~I~g~~G~GKt~l-~~~la~~~~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R 321 (615)
++|||++|+|||+| +++|++++++|+ |||++||||++|+.||++++.+ .++|+|||+|+||||+|+.+|
T Consensus 164 ~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~~~~---------~~~l~~tvvV~atsd~p~~~r 234 (501)
T TIGR00962 164 ELIIGDRQTGKTAVAIDTIINQKDSDVYCVYVAIGQKASTVAQVVRKLEE---------HGAMDYTIVVAATASDSASLQ 234 (501)
T ss_pred EEeecCCCCCccHHHHHHHHhhcCCCeEEEEEEccCChHHHHHHHHHHHh---------cCccceeEEEEecCCCCHHHH
Confidence 99999999999999 789999999998 6999999999999999999864 688999999999999999999
Q ss_pred HHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCc
Q psy13480 322 EASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401 (615)
Q Consensus 322 ~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GS 401 (615)
++++|+|+|+||||||+|+|||||+||+||||+|+||||++++|||+++||||++|+.+++|+||||++++. .++||
T Consensus 235 ~~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~A~A~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~~---~g~GS 311 (501)
T TIGR00962 235 YLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDE---KGGGS 311 (501)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccCC---CCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999997532 23799
Q ss_pred eEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHH
Q psy13480 402 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEIL 481 (615)
Q Consensus 402 IT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L 481 (615)
||+||+|++||||+++||++++++|+||||+|||+||++||||||||+.|+||+++.++. ++|++++.++|.+|
T Consensus 312 ITal~~V~~~~dD~s~pI~~~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~------~~~~~~a~~lr~~l 385 (501)
T TIGR00962 312 LTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQI------KAMKQVAGSLRLEL 385 (501)
T ss_pred eEEEEEEECCCCCCCCcchHhhhhhcceEEEEcHhHHhCCCCCccCCccchhccCccccC------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999976 89999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHH-HHHHHHHHccccch
Q psy13480 482 QEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFY-DMSRHAVESTAQSE 560 (615)
Q Consensus 482 ~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fy-d~a~~ai~~g~~~~ 560 (615)
++|+|++++++++ .+ ++++++..+.+++.++ +||+|+.++ .+++++|+.+|.++...| +.. .+++...+.
T Consensus 386 a~y~e~~~l~~~g-~~-ld~~~~~~l~~~~~i~-~fL~Q~~~~----~~~~~~q~~~l~a~~~G~l~~v--~~~~i~~~~ 456 (501)
T TIGR00962 386 AQYRELEAFSQFA-SD-LDEATKAQLERGKRLV-ELLKQPQYK----PLPVEEQVVILYAGTKGYLDDI--PVDKVRKFE 456 (501)
T ss_pred HHHHHHHHHHHHh-cc-CCHHHHHHHHHHHHHH-HHhcCCCCC----CcCHHHHHHHHHHHhcCCcccc--cHHHHHHHH
Confidence 9999999999984 44 6777777788999887 799999754 499999999999876543 221 122323332
Q ss_pred hhhhHHHHHhhhhHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q psy13480 561 NKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAF 610 (615)
Q Consensus 561 ~~i~~~~i~~~~~~~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f 610 (615)
.....++++.++++...|...+.+ +++.++.+.++++++.+.|
T Consensus 457 -~~l~~~l~~~~~~~~~~i~~~~~l------~~~~~~~L~~~i~~~~~~f 499 (501)
T TIGR00962 457 -QELLDYLDANHPDILEEINTKKKL------TEELEDKLKEALKNFKKTF 499 (501)
T ss_pred -HHHHHHHHHhhHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHhh
Confidence 223356777777888888766654 2233445555555555444
No 13
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=6.2e-109 Score=907.39 Aligned_cols=481 Identities=24% Similarity=0.336 Sum_probs=414.5
Q ss_pred cccccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCc
Q psy13480 5 LGKMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKP 84 (615)
Q Consensus 5 ~~~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ 84 (615)
++++......+.+|+|.+|.|++++++|+.++++||+|.+. +++.|||+++++|.+.+|+|++|+||+.|++|.+||++
T Consensus 16 i~~~~~~~~~~~~G~V~~v~g~~v~v~g~~~~~~ge~~~i~-~~~~g~Vi~~~~~~~~~~~~~~~~gi~~g~~V~~~~~~ 94 (502)
T PRK09281 16 IENFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEFP-GGVYGIALNLEEDNVGAVILGDYEDIKEGDTVKRTGRI 94 (502)
T ss_pred HHhcCCcceeEEEEEEEEEeCCEEEEECccccccCCEEEEC-CCcEEEEEEEcCCeEEEEEecCcccccCCCeeeecCCc
Confidence 34454444566789999999999999999899999999997 45899999999999999999999999999999999999
Q ss_pred ceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeee
Q psy13480 85 LSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKM 164 (615)
Q Consensus 85 lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i 164 (615)
++|++|++|||||+|++|||||+.++....
T Consensus 95 ~~v~vg~~llGrv~d~~G~pid~~~~~~~~-------------------------------------------------- 124 (502)
T PRK09281 95 LEVPVGEALLGRVVNPLGQPIDGKGPIEAT-------------------------------------------------- 124 (502)
T ss_pred eEEecCHHhcCCEEccCCCCcCCCCCCCCC--------------------------------------------------
Confidence 999999999999999999999976432110
Q ss_pred cCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCce
Q psy13480 165 IMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGGT 243 (615)
Q Consensus 165 ~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq~ 243 (615)
++||+..+. ++.+|.++++||.||+|+||+|+|||+|||
T Consensus 125 ----------------------------------------~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pigrGQr 164 (502)
T PRK09281 125 ----------------------------------------ETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQR 164 (502)
T ss_pred ----------------------------------------ceecccCCCcCccccCCccceeecCCeeeecccccccCcE
Confidence 134555443 478999999999999999999999999999
Q ss_pred eeccCCCCCCcchh-hHHhhhcCCCCE-EEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHH
Q psy13480 244 TAIPGAFGCGKTVI-SQALSKYSNSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321 (615)
Q Consensus 244 ~~I~g~~G~GKt~l-~~~la~~~~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R 321 (615)
++|||++|+|||+| +++|++++++|+ |||++||||++|+.+|+++|.+ .++|+|||+|+||||+|+.+|
T Consensus 165 ~~Ifg~~g~GKt~lal~~i~~~~~~dv~~V~~~IGer~~ev~e~~~~~~~---------~~~l~~tvvv~atsd~p~~~r 235 (502)
T PRK09281 165 ELIIGDRQTGKTAIAIDTIINQKGKDVICIYVAIGQKASTVAQVVRKLEE---------HGAMEYTIVVAATASDPAPLQ 235 (502)
T ss_pred EEeecCCCCCchHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhh---------cCCccceEEEEeCCCCCHHHH
Confidence 99999999999999 789999999998 6999999999999999999854 688999999999999999999
Q ss_pred HHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCc
Q psy13480 322 EASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401 (615)
Q Consensus 322 ~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GS 401 (615)
++++|+|+|+||||||+|+|||||+||+||||+|+||||++++|||+++|||||+|+.||+||||||+++.. .++||
T Consensus 236 ~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~~---~~~GS 312 (502)
T PRK09281 236 YLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDE---LGGGS 312 (502)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccCC---CCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999997532 25799
Q ss_pred eEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHH
Q psy13480 402 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEIL 481 (615)
Q Consensus 402 IT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L 481 (615)
||+||+|++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.++. ++|++++.++|.+|
T Consensus 313 ITal~~V~~~~dD~s~pI~d~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~------~~~~~~a~~lr~~l 386 (502)
T PRK09281 313 LTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGGAAQI------KAMKKVAGTLRLDL 386 (502)
T ss_pred EEEEEEEECCCCCCCCcchHhhhcccceEEEEcHHHHhCCCCCccCCcccccccCCccCC------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999886 88999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHH-HHHHHHHHccccch
Q psy13480 482 QEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFY-DMSRHAVESTAQSE 560 (615)
Q Consensus 482 ~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fy-d~a~~ai~~g~~~~ 560 (615)
++|+|+++++++ | ..++++++..+.+++.++ +||+|+.++ ..++++|+.++.++...| +.. ..++...+.
T Consensus 387 a~y~e~~~l~~~-g-~~l~~~~~~~l~~~~~i~-~fL~Q~~~~----~~~~~~~~~~~~~~~~G~l~~l--~~~~i~~~~ 457 (502)
T PRK09281 387 AQYRELEAFAQF-G-SDLDEATRAQLERGQRLV-ELLKQPQYS----PLPVEEQVVILYAGTNGYLDDV--PVEKVRRFE 457 (502)
T ss_pred HHHHHHHHHHHH-h-cCCCHHHHHHHHHHHHHH-HHhCCCCCC----CCCHHHHHHHHHHHhcCccccC--CHHHHHHHH
Confidence 999999999998 5 457788888888999887 899999754 479999999999965432 110 011111121
Q ss_pred hhhhHHHHHhhhhHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q psy13480 561 NKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAF 610 (615)
Q Consensus 561 ~~i~~~~i~~~~~~~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f 610 (615)
.++ ..++++..+++...|...+.+ + ++.++.++++.+++.+.|
T Consensus 458 ~~~-~~~l~~~~~~~~~~I~~~~~l--~----~~~~~~L~~~i~~~~~~f 500 (502)
T PRK09281 458 AEL-LAYLRSNHADLLEEIRETKDL--S----DEIEAKLKAAIEEFKKTF 500 (502)
T ss_pred HHH-HHHHHHhhHHHHHHHHhcCCC--C----HHHHHHHHHHHHHHHHHh
Confidence 222 246666777888888766654 2 223345555555555544
No 14
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=9.2e-109 Score=899.73 Aligned_cols=462 Identities=22% Similarity=0.319 Sum_probs=408.3
Q ss_pred cccccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCc
Q psy13480 5 LGKMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKP 84 (615)
Q Consensus 5 ~~~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ 84 (615)
++++......+.+|+|.+|.|+++++.|++++++||+|.+. +++.|||+++++|.+.+++|++++||+.|++|.+||++
T Consensus 16 ~~~~~~~~~~~~~G~V~~v~g~ii~v~gl~~~~~gEl~~i~-~~~~g~Vi~l~~~~v~~~~l~~~~gi~~G~~V~~tg~~ 94 (497)
T TIGR03324 16 RESFQPQLTVQEVGTVESVSTGIARVHGLPGVGFEELLRFP-GGLLGIAFNVDEDEVGVVLLGEYSHLQAGDEVERTGRV 94 (497)
T ss_pred HHhcCCCcceeEEEEEEEEeceEEEEEccCCCCcCCEEEEC-CCcEEEEEEEcCCeEEEEEecCCcCCcCCCEEEECCCC
Confidence 34455444567889999999999999998899999999995 45899999999999999999999999999999999999
Q ss_pred ceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeee
Q psy13480 85 LSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKM 164 (615)
Q Consensus 85 lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i 164 (615)
++||+|++|||||+|++|||||+.++...
T Consensus 95 ~~vpvg~~llGRVvd~lG~PiDg~~~~~~--------------------------------------------------- 123 (497)
T TIGR03324 95 MDVPVGDGLLGRVVDPLGRPLDGGGPLAS--------------------------------------------------- 123 (497)
T ss_pred CeEECCHhhCcCEECCCCCCcCCCCCCCC---------------------------------------------------
Confidence 99999999999999999999998743211
Q ss_pred cCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCce
Q psy13480 165 IMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGT 243 (615)
Q Consensus 165 ~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~ 243 (615)
.++||+..++| +.+|.++++||.||+|+||+|+|||||||
T Consensus 124 ---------------------------------------~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~pigrGQR 164 (497)
T TIGR03324 124 ---------------------------------------SPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQR 164 (497)
T ss_pred ---------------------------------------CceeehhccCcCccccCCCCchhhcCCEEEeccCCcccCCE
Confidence 02467776664 88999999999999999999999999999
Q ss_pred eeccCCCCCCcchh-hHHhhhcCCCCE-EEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHH
Q psy13480 244 TAIPGAFGCGKTVI-SQALSKYSNSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321 (615)
Q Consensus 244 ~~I~g~~G~GKt~l-~~~la~~~~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R 321 (615)
++|||++|+|||+| +.+|++++++|+ |||++||||++|+.+|+++|.+ .++|+|||+|+||||+|+.+|
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~q~~~dv~~V~~~IGeR~rev~e~i~~l~~---------~~~l~~tvvV~atsd~p~~~r 235 (497)
T TIGR03324 165 ELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLRE---------HGAMDYTIVVVTEGNDPPGLQ 235 (497)
T ss_pred EEeecCCCCCHHHHHHHHHHHhcCCCcEEEEEEeccCcHHHHHHHHHhhh---------cCCcceeEEEEeCCCCCHHHH
Confidence 99999999999999 689999999997 9999999999999999999854 688999999999999999999
Q ss_pred HHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCc
Q psy13480 322 EASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401 (615)
Q Consensus 322 ~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GS 401 (615)
++++|+|+||||||||+|+||||++||+||||+|+||||++++|||+++||||++|+.+|+|+||||+++. ..++||
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~---~~~~GS 312 (497)
T TIGR03324 236 YIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNE---ELGGGS 312 (497)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccC---CCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999752 125899
Q ss_pred eEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHH
Q psy13480 402 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEIL 481 (615)
Q Consensus 402 IT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L 481 (615)
||+||+|++++||+++||++|+++|+||||+|||+||++||||||||+.|+||++..++. ++|++++.++|.+|
T Consensus 313 ITal~~V~~~~dD~s~pI~d~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~------~~~~~~a~~lr~~l 386 (497)
T TIGR03324 313 LTALPIIETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQL------AAYRAVAGDLKLAY 386 (497)
T ss_pred eeEEEEEEcCCCCCCCcchHhheeccceEEEEcHHHHhCCCCCcCCCccccccCCccccC------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 89999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHH-HHHHHHHHccccch
Q psy13480 482 QEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFY-DMSRHAVESTAQSE 560 (615)
Q Consensus 482 ~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fy-d~a~~ai~~g~~~~ 560 (615)
++|+|+++++++ |.+ ++++++..+.+++.++ +||+|+. ++++++++|+..|.++.+.| |. ..+++...+.
T Consensus 387 a~y~e~e~~~~~-G~~-ld~~~~~~i~~~~~i~-~fL~Q~~----~~~~~~~~~~~~l~~~~~g~~d~--~~~~~v~~~~ 457 (497)
T TIGR03324 387 AQFEELETFARF-GAR-LDENTRKTIEHGRRIR-ACLKQTQ----SSPLTVPQQIAILLALTNGLFDG--VDLDAMPEAE 457 (497)
T ss_pred HHHHHHHHHHHh-hhh-cCHHHHHHHHhHHHHH-HHhCCCC----CCCCCHHHHHHHHHHHhcCCCCC--CCHHHHHHHH
Confidence 999999999998 545 6666666677888885 9999997 45699999999999987633 32 1122222232
Q ss_pred hhhhHHHHHhhhhHHHHHHhcCCCC
Q psy13480 561 NKITWSVIRDSMSNILYQLSSMKFK 585 (615)
Q Consensus 561 ~~i~~~~i~~~~~~~~~~i~~~k~~ 585 (615)
..+ ..++++.++++...|...|..
T Consensus 458 ~~~-~~~~~~~~~~~~~~~~~~~~~ 481 (497)
T TIGR03324 458 SAI-RAAVTSLPADLRERLQSGKKL 481 (497)
T ss_pred HHH-HHHHHhhhHHHHHHHHhcCCC
Confidence 222 367777777888888666643
No 15
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=9.4e-109 Score=891.14 Aligned_cols=416 Identities=28% Similarity=0.422 Sum_probs=381.7
Q ss_pred cccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcC---c-eeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCc
Q psy13480 9 ADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGY---F-ELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKP 84 (615)
Q Consensus 9 ~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~---~-~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ 84 (615)
....+.+.+|+|++|.|++|++.+ .++++||+|.++. . .+.||||+++++++++|+|++|+||++|++|++||++
T Consensus 16 ~~~~~~~~~G~V~~v~g~~v~~~~-~~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~ 94 (439)
T PRK06936 16 VGSRLIQIRGRVTQVTGTILKAVV-PGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLTPLGEMYGISSNTEVSPTGTM 94 (439)
T ss_pred hcCCccceeeEEEEEECcEEEEEe-CCCCCCCEEEEecCCCCcceEEEEEEEECCeEEEEecCCCCCCCCCCEEEeCCCc
Confidence 344667889999999999999986 5899999999952 2 5899999999999999999999999999999999999
Q ss_pred ceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeee
Q psy13480 85 LSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKM 164 (615)
Q Consensus 85 lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i 164 (615)
++|++|++|||||||++|||||+.+.... .
T Consensus 95 ~~v~vg~~lLGRV~d~~G~plD~~~~~~~---------------~----------------------------------- 124 (439)
T PRK06936 95 HQVGVGEHLLGRVLDGLGQPFDGGHPPEP---------------A----------------------------------- 124 (439)
T ss_pred eEEEeCccccCCEECCCCCccCCCCCCCc---------------c-----------------------------------
Confidence 99999999999999999999997643210 0
Q ss_pred cCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCce
Q psy13480 165 IMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGT 243 (615)
Q Consensus 165 ~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~ 243 (615)
++||+..++| +.+|.++++||.||+|+||.|+|+++||+
T Consensus 125 ----------------------------------------~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~ 164 (439)
T PRK06936 125 ----------------------------------------AWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQR 164 (439)
T ss_pred ----------------------------------------ceeeccCCCCChHHccccCCCCcCCcceeeeeEEecCCCE
Confidence 1235544433 67788899999999999999999999999
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHH
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREA 323 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~ 323 (615)
++|+|++|+|||||+++|+++.++|+|||++||||+||++||+++.- +.+.|+|||+|+||||+|+.+|++
T Consensus 165 ~~I~G~sG~GKStLl~~Ia~~~~~dv~V~~liGERgrEv~ef~~~~l---------~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 165 MGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIESDL---------GEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred EEEECCCCCChHHHHHHHhcCCCCCEEEEEEEccCcHHHHHHHHHHh---------cccccceeEEEEECCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999997741 145699999999999999999999
Q ss_pred HHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceE
Q psy13480 324 SIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVS 403 (615)
Q Consensus 324 s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT 403 (615)
++|+|+|+||||||||+|||||+||+||||+|+||||+++||||+++|||||+|+.||+||||||+ .++||||
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~-------~~~GSIT 308 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQ-------SDKGSIT 308 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhcc-------CCCccee
Confidence 999999999999999999999999999999999999999999999999999999999999999998 3589999
Q ss_pred EEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHh
Q psy13480 404 IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQE 483 (615)
Q Consensus 404 ~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 483 (615)
+|++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.+ ++|++++.++|++|++
T Consensus 309 ~i~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~------~~~~~~a~~~r~~la~ 382 (439)
T PRK06936 309 ALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVS------KEHKTWAGRLRELLAK 382 (439)
T ss_pred eeEEEEccCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCCcccccccchhhCC------HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999877 8999999999999999
Q ss_pred HHHHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 484 EEDLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 484 ~~el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
|+|+++++++++ .+.+++.|+++....+ + ++||+|++ ++.|++++|+.+|..++
T Consensus 383 y~e~e~li~iG~y~~g~d~~~d~ai~~~~~-i-~~fL~Q~~----~~~~~~~~~~~~l~~~~ 438 (439)
T PRK06936 383 YEEVELLLQIGEYQKGQDKEADQAIERIGA-I-RGFLRQGT----HELSHFNETLNLLETLT 438 (439)
T ss_pred chHHHHHHHhcCccCCCCHHHHHHHHhHHH-H-HHHcCCCC----CCCCCHHHHHHHHHHHh
Confidence 999999999843 4789999999887665 4 69999996 77899999999999875
No 16
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=9.4e-108 Score=894.64 Aligned_cols=481 Identities=23% Similarity=0.340 Sum_probs=417.0
Q ss_pred cccccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCc
Q psy13480 5 LGKMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKP 84 (615)
Q Consensus 5 ~~~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ 84 (615)
++++......+.+|+|.+|.|+++++.|++++++||+|.+. +++.|||++++++.+.+++|++++||++|++|.+||++
T Consensus 16 ~~~~~~~~~~~~~G~V~~v~g~i~~v~gl~~~~~ge~~~i~-~~~~g~V~~l~~~~v~~~~l~~~~gi~~G~~V~~tg~~ 94 (502)
T PRK13343 16 IARYEPQPDAREIGRVESVGDGIAFVSGLPDAALDELLRFE-GGSRGFAFNLEEELVGAVLLDDTADILAGTEVRRTGRV 94 (502)
T ss_pred HhcCCCcceeEEeeEEEEEeCCEEEEeCCCCCCCCCEEEEC-CCcEEEEEEecCCeEEEEEeeCCCCCCCCCEeEecCCc
Confidence 34454444566789999999999999998899999999995 45899999999999999999999999999999999999
Q ss_pred ceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeee
Q psy13480 85 LSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKM 164 (615)
Q Consensus 85 lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i 164 (615)
++|++|++|||||+|++|||||+.++....
T Consensus 95 ~~vpvg~~llGRVid~lG~piDg~~~i~~~-------------------------------------------------- 124 (502)
T PRK13343 95 LEVPVGDGLLGRVIDPLGRPLDGGGPLQAT-------------------------------------------------- 124 (502)
T ss_pred ceeecCHHhcCCEECCCCCcccCCCCCCCC--------------------------------------------------
Confidence 999999999999999999999987543210
Q ss_pred cCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCce
Q psy13480 165 IMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGT 243 (615)
Q Consensus 165 ~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~ 243 (615)
++||+..+.| +.+|.++++||.||+|+||+|+|||||||
T Consensus 125 ----------------------------------------~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pigrGQR 164 (502)
T PRK13343 125 ----------------------------------------ARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQR 164 (502)
T ss_pred ----------------------------------------ceecccCCCcChhhcCCCCcccccCCceeccccccccCCE
Confidence 1245554443 78899999999999999999999999999
Q ss_pred eeccCCCCCCcchh-hHHhhhcCCCCE-EEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHH
Q psy13480 244 TAIPGAFGCGKTVI-SQALSKYSNSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321 (615)
Q Consensus 244 ~~I~g~~G~GKt~l-~~~la~~~~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R 321 (615)
++|||++|+|||+| +++|++++++|+ |||++||||++|+.+|++++.+ .++|+|||+|+||||+|+.+|
T Consensus 165 ~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~l~~---------~~~l~~tvvV~atsd~~~~~r 235 (502)
T PRK13343 165 ELIIGDRQTGKTAIAIDAIINQKDSDVICVYVAIGQKASAVARVIETLRE---------HGALEYTTVVVAEASDPPGLQ 235 (502)
T ss_pred EEeeCCCCCCccHHHHHHHHhhcCCCEEEEEEEeccChHHHHHHHHHHHh---------cCccceeEEEEecccccHHHH
Confidence 99999999999999 799999999998 6999999999999999999853 688999999999999999999
Q ss_pred HHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCc
Q psy13480 322 EASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401 (615)
Q Consensus 322 ~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GS 401 (615)
++++|+|+||||||||+|+|||||+||+||||+|+||||++++|||+++||||++|+.+++|+||||+++. ..++||
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~---~~~gGS 312 (502)
T PRK13343 236 YLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSP---ELGGGS 312 (502)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecchHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCC---CCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999753 125899
Q ss_pred eEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHH
Q psy13480 402 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEIL 481 (615)
Q Consensus 402 IT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L 481 (615)
||+|++|+++|||+++||++|++||+||||+|||+||++||||||||+.|+||+++.++. ++|++++.++|.+|
T Consensus 313 ITal~~V~~~~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~------~~~~~~a~~lr~~l 386 (502)
T PRK13343 313 LTALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGGKAQH------PAIRKESGRLRLDY 386 (502)
T ss_pred eEEEEEEEcCCCCCCCcchhhhhcccceEEEECHHHHhCCCCCccCCccchhccCccccC------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999977 89999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHH-HHHHHHHHccccch
Q psy13480 482 QEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFY-DMSRHAVESTAQSE 560 (615)
Q Consensus 482 ~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fy-d~a~~ai~~g~~~~ 560 (615)
++|+|++++++++. + ++++.+..+.++++++ +||+|+.+++ +++++|+..|.++.+.| |. -.+++...+.
T Consensus 387 a~y~e~e~~~~~G~-~-ld~~~~~~i~~~~~i~-~~L~Q~~~~~----~~~~~~~~~l~~~~~g~~~~--~~~~~i~~~~ 457 (502)
T PRK13343 387 AQFLELEAFTRFGG-L-LDAGTQKQITRGRRLR-ELLKQPRFSP----LSVEEQIALLYALNEGLLDA--VPLANIQAFE 457 (502)
T ss_pred HHHHHHHHHHHHhh-h-cCHHHHHHHHHHHHHH-HHhcCCCCCC----CCHHHHHHHHHHHhcCCccC--CCHHHHHHHH
Confidence 99999999999863 4 5555555667888886 7999998655 89999999999987643 32 1222322343
Q ss_pred hhhhHHHHHhhhhHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q psy13480 561 NKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAF 610 (615)
Q Consensus 561 ~~i~~~~i~~~~~~~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f 610 (615)
..+ ..++++.++++...|...|.+ + ++.++++++..+++.+.|
T Consensus 458 ~~~-~~~~~~~~~~~~~~i~~~~~l--~----~~~~~~l~~~~~~~~~~~ 500 (502)
T PRK13343 458 ERL-LEKLDARFAALSLALESPREL--D----EAWLAALEEILREAGERF 500 (502)
T ss_pred HHH-HHHHHhhhHHHHHHHHhcCCC--C----HHHHHHHHHHHHHHHHhh
Confidence 333 267777788888888777654 2 223455566666655554
No 17
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=1.5e-107 Score=887.95 Aligned_cols=416 Identities=28% Similarity=0.431 Sum_probs=384.1
Q ss_pred eeeEEEEEECceEEEEeCCC--CcceeEEEEcC--ceeEEEEEEE-eCCeEEEEEecCCCCCCCCCeEEEcCCcceeecC
Q psy13480 16 RFGFVYAVSGPVVTAEKMSG--SAMYELVRVGY--FELVGEIIRL-EGDMATIQVYEETSGVTVGDPVLRTGKPLSVELG 90 (615)
Q Consensus 16 ~~G~I~~I~Gpvv~a~g~~~--~~~~E~v~vg~--~~l~GEVI~i-~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lG 90 (615)
..|+|++|.|++|+++|..+ +++||+|.+.. +.+.|||+++ +++.+.+++|++|.||++|++|.+||++++|++|
T Consensus 2 ~~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~~~~~eVv~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg 81 (461)
T PRK12597 2 MIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVG 81 (461)
T ss_pred CccEEEEEECcEEEEEECCCCCcCccCEEEEecCCCcEEEEEEEEcCCCeEEEEEecCccCCCCCCEEEeCCCceEEEcC
Confidence 36999999999999999866 99999999953 4588999999 9999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCC
Q psy13480 91 PGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKA 170 (615)
Q Consensus 91 pgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~ 170 (615)
++|||||||++|||||+.+.... .
T Consensus 82 ~~llGRVid~~G~plD~~~~~~~---------------~----------------------------------------- 105 (461)
T PRK12597 82 EAVLGRLLDVLGEPLDGGPPLPA---------------E----------------------------------------- 105 (461)
T ss_pred hhhcCCEEeeccccccCCCCCCC---------------c-----------------------------------------
Confidence 99999999999999997753211 0
Q ss_pred CcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCC-CCcccCCCCCCccccceeeeccccccccCceeeccCC
Q psy13480 171 KGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQP-RPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGA 249 (615)
Q Consensus 171 ~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~-rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~ 249 (615)
++||+..+ .++.+|.++++||.||+|+||+|+|||||||++|||+
T Consensus 106 ----------------------------------~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~ 151 (461)
T PRK12597 106 ----------------------------------ERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGG 151 (461)
T ss_pred ----------------------------------ceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecC
Confidence 12454443 3478899999999999999999999999999999999
Q ss_pred CCCCcchhhHHhhhcCC---CCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHH
Q psy13480 250 FGCGKTVISQALSKYSN---SDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIY 326 (615)
Q Consensus 250 ~G~GKt~l~~~la~~~~---adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~ 326 (615)
+|+|||||+.+++++.. +|+|||++||||+||++||++++.+ .+.|+||++|+||||+|+.+|++++|
T Consensus 152 ~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~---------~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 152 AGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKE---------SGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHh---------cCCcceeEEEecCCCCCHHHHHHHHH
Confidence 99999999999988766 9999999999999999999999843 67899999999999999999999999
Q ss_pred HHhhHHHHHHhC-CCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEE
Q psy13480 327 TGITLSEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIV 405 (615)
Q Consensus 327 tg~tiAEyfrd~-G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i 405 (615)
+|+|+||||||+ |+||||++||+||||+|+||||+++||||+++|||||+|+.|++||||||+ .++||||+|
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~l~ERag~-------~~~GSIT~i 295 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIAS-------TKNGSITSI 295 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHHHHHHhhcC-------CCCccccEE
Confidence 999999999998 999999999999999999999999999999999999999999999999987 358999999
Q ss_pred EeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchh-cchhhhhhccCcchHHHHHHHHHHHHhH
Q psy13480 406 GAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYM-RALDDFYDKNHPEFVPLRTKVKEILQEE 484 (615)
Q Consensus 406 ~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 484 (615)
++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||++ +.+.. ++|++++.++|++|++|
T Consensus 296 ~tVl~~~dD~~dPI~d~~~~ilDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~------~~h~~~a~~~r~~la~y 369 (461)
T PRK12597 296 QAVYVPADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDPLVVG------ERHYDAAIEVKRILQRY 369 (461)
T ss_pred EEEEecCCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccccccccccCC------HHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999 55655 78999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCC------CCCccCCHHHHHHHHHHHHH
Q psy13480 485 EDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYS------PYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 485 ~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~------~~d~~~~~~kq~~~L~~I~~ 544 (615)
+|++++++++|...+++++...+.+++.++ +||+|++|. ..++++|+++++..|+.|+.
T Consensus 370 ~e~e~li~i~gy~~l~~~~d~~i~~~~~i~-~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~ 434 (461)
T PRK12597 370 KELEDVIAILGIDELSAEDKIIVKRARQLQ-RFLTQPFFVTEAFTGEPGVSVPLEETLDSCERILN 434 (461)
T ss_pred hhHHHHHHHcCCccCCHHHHHHHHhHHHHH-HHhCCCcchhhcccCCCCcccCHHHHHHHHHHHhC
Confidence 999999999997668888888899999887 899999875 34899999999999999875
No 18
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=9.6e-107 Score=877.22 Aligned_cols=414 Identities=30% Similarity=0.486 Sum_probs=383.6
Q ss_pred eeEEEEEECceEEEEeCCCCcceeEE---EEcC--c-eeEEEEEE-EeCCeEEEEEecCCCCCCCCCeEEEcCCcceeec
Q psy13480 17 FGFVYAVSGPVVTAEKMSGSAMYELV---RVGY--F-ELVGEIIR-LEGDMATIQVYEETSGVTVGDPVLRTGKPLSVEL 89 (615)
Q Consensus 17 ~G~I~~I~Gpvv~a~g~~~~~~~E~v---~vg~--~-~l~GEVI~-i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~l 89 (615)
+|+|++|.|++|++.|+ .+.+||+| .+.. + .+.+||++ ++++.+.+++|+++.||++|+.|.+||++++|++
T Consensus 2 ~G~v~~v~g~~ie~~~~-~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~v 80 (461)
T TIGR01039 2 KGKVVQVIGPVVDVEFE-QGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPV 80 (461)
T ss_pred ccEEEEEEeeEEEEEEC-CCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEEc
Confidence 59999999999999996 68999999 8822 2 48999999 9999999999999999999999999999999999
Q ss_pred CcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCC
Q psy13480 90 GPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPK 169 (615)
Q Consensus 90 GpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~ 169 (615)
|++|||||+|++|+|||+.++...
T Consensus 81 g~~lLGRViD~~G~pid~~~~~~~-------------------------------------------------------- 104 (461)
T TIGR01039 81 GKETLGRIFNVLGEPIDEKGPIPA-------------------------------------------------------- 104 (461)
T ss_pred ChhhcCCEEccCCcccCCCCCCCC--------------------------------------------------------
Confidence 999999999999999997643210
Q ss_pred CCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccC
Q psy13480 170 AKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPG 248 (615)
Q Consensus 170 ~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g 248 (615)
.++||++.++| +.+|.++++||.||+|+||+|+|||||||++|||
T Consensus 105 ----------------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~ 150 (461)
T TIGR01039 105 ----------------------------------KERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFG 150 (461)
T ss_pred ----------------------------------CcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeec
Confidence 02467776665 7899999999999999999999999999999999
Q ss_pred CCCCCcchhhHHhhhcCCCC---EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHH
Q psy13480 249 AFGCGKTVISQALSKYSNSD---VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASI 325 (615)
Q Consensus 249 ~~G~GKt~l~~~la~~~~ad---viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~ 325 (615)
++|+|||+|+++++++..+| +|||++||||+|||+||++++.+ .++|+|||+|+||||+|+.+|++++
T Consensus 151 ~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~---------~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 151 GAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKE---------SGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHh---------cCCcceeEEEEECCCCCHHHHHHHH
Confidence 99999999999999887777 99999999999999999999842 6889999999999999999999999
Q ss_pred HHHhhHHHHHHh-CCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEE
Q psy13480 326 YTGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSI 404 (615)
Q Consensus 326 ~tg~tiAEyfrd-~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~ 404 (615)
|+|+|+|||||| +|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+ .++||||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~-------~~~GSITa 294 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITS-------TKTGSITS 294 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCC-------CCCCceeE
Confidence 999999999999 8999999999999999999999999999999999999999999999999997 35899999
Q ss_pred EEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchh-cchhhhhhccCcchHHHHHHHHHHHHh
Q psy13480 405 VGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYM-RALDDFYDKNHPEFVPLRTKVKEILQE 483 (615)
Q Consensus 405 i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~ 483 (615)
|++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+| +.+.. ++|++++.++|++|++
T Consensus 295 i~tVl~~gdD~~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~------~~h~~~a~~~r~~la~ 368 (461)
T TIGR01039 295 VQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPSVVG------EEHYDVARGVQQILQR 368 (461)
T ss_pred EEEEEccCCCCCCccHHHHHHhcceEEEECHHHHhCCCCCCcCCccccccccCCccCC------HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 55554 7899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCC------CCccCCHHHHHHHHHHHHH
Q psy13480 484 EEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSP------YDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 484 ~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~------~d~~~~~~kq~~~L~~I~~ 544 (615)
|+|++++++++|...+++.++..+++++.++ +||+|++|.. .++++++++++..|..|+.
T Consensus 369 y~e~~~li~i~g~~~lsd~~~~~l~~~~~i~-~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~ 434 (461)
T TIGR01039 369 YKELQDIIAILGMDELSEEDKLTVERARRIQ-RFLSQPFFVAEVFTGQPGKYVPLKDTIRGFKEILE 434 (461)
T ss_pred hhHHHHHHHHhCCccCCHHHHHHHHhHHHHH-HHhCCCCchhccccCCCCcccCHHHHHHHHHHHhC
Confidence 9999999999998888888999999999886 9999998532 3799999999999999875
No 19
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.1e-105 Score=865.79 Aligned_cols=416 Identities=27% Similarity=0.398 Sum_probs=381.6
Q ss_pred CCcceeeEEEEEECceEEEEeCCCCcceeEEEEc--CceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeec
Q psy13480 12 DREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVG--YFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVEL 89 (615)
Q Consensus 12 ~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg--~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~l 89 (615)
.+.+.+|+|.+|.|++|++.|+ .+++||+|.|+ ++.+.||||++++|.+++|+|++|.||++|++|.+||++++|++
T Consensus 21 ~~~~~~G~v~~v~g~~i~~~g~-~~~ige~~~i~~~~~~~~~EVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~v 99 (444)
T PRK08972 21 FRAVASGKLVRVVGLTLEATGC-RAPVGSLCSIETMAGELEAEVVGFDGDLLYLMPIEELRGVLPGARVTPLGEQSGLPV 99 (444)
T ss_pred CCcceeeEEEEEEcCEEEEeeC-CCCCCCEEEEecCCCcEEEEEEEecCCEEEEEECCCcCCCCCCCEEEECCCccEEEc
Confidence 4467889999999999999997 59999999995 35699999999999999999999999999999999999999999
Q ss_pred CcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCC
Q psy13480 90 GPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPK 169 (615)
Q Consensus 90 GpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~ 169 (615)
|++|||||||++|+|||+.++... +.
T Consensus 100 g~~llGRVid~~G~plD~~~~~~~---------------~~--------------------------------------- 125 (444)
T PRK08972 100 GMSLLGRVIDGVGNPLDGLGPIYT---------------DQ--------------------------------------- 125 (444)
T ss_pred ChhhcCCeECCCCCCcCCCCCCCC---------------Cc---------------------------------------
Confidence 999999999999999998754321 11
Q ss_pred CCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccC
Q psy13480 170 AKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPG 248 (615)
Q Consensus 170 ~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g 248 (615)
+||+..+.| +.+|.++++||.||+|+||.++||++||+++|+|
T Consensus 126 ------------------------------------~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G 169 (444)
T PRK08972 126 ------------------------------------RASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFA 169 (444)
T ss_pred ------------------------------------cccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEEEC
Confidence 233333333 5678899999999999999999999999999999
Q ss_pred CCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHH
Q psy13480 249 AFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTG 328 (615)
Q Consensus 249 ~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg 328 (615)
++|+|||||+++|+++.++|++|+++||||+||++||++++. +...|+|||+|+||||+|+.+|++++|+|
T Consensus 170 ~sG~GKSTLL~~I~~~~~~dv~Vi~lIGER~rEv~efi~~~l---------~~~~l~rtvvv~atsd~p~~~R~~a~~~A 240 (444)
T PRK08972 170 GSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVKEFIEEIL---------GEEGRARSVVVAAPADTSPLMRLKGCETA 240 (444)
T ss_pred CCCCChhHHHHHhccCCCCCEEEEEEEcCChHHHHHHHHHhh---------ccCCcccEEEEEECCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999973 24669999999999999999999999999
Q ss_pred hhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEee
Q psy13480 329 ITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAV 408 (615)
Q Consensus 329 ~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~V 408 (615)
+|+||||||+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+.. +++||||+|++|
T Consensus 241 ~tiAEyfrd~G~~VLl~~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~L~ERAg~~~-----~~~GSITai~tV 315 (444)
T PRK08972 241 TTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGG-----PGQGSITAFYTV 315 (444)
T ss_pred HHHHHHHHHcCCCEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHHhcCCC-----CCCceeeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999852 358999999999
Q ss_pred cCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHH
Q psy13480 409 SPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLS 488 (615)
Q Consensus 409 s~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~ 488 (615)
++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.. ++|++++.++|++|++|++++
T Consensus 316 l~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~i~~------~~h~~~a~~~r~~ls~y~~~e 389 (444)
T PRK08972 316 LTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMVIS------EEHLEAMRRVKQVYSLYQQNR 389 (444)
T ss_pred EEeCCCCCcchHHhhhhhcceEEEEcHHHHhCCCCCeeCCccccccCchhcCc------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999977 899999999999999999999
Q ss_pred HHHHHh--cCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHH
Q psy13480 489 EIVQLV--GKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 489 ~i~~~~--g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~ 544 (615)
++++++ +.+.+++.|+++-...+ | ++||+|+. ++.+++++++..|..|+.
T Consensus 390 ~li~~g~y~~g~d~~~d~ai~~~~~-i-~~fl~Q~~----~~~~~~~~~~~~l~~~~~ 441 (444)
T PRK08972 390 DLISIGAYKQGSDPRIDNAIRLQPA-M-NAFLQQTM----KEAVPYDMSVNMLKQLAA 441 (444)
T ss_pred HHHHHhCccCCCCHHHHHHHHhhHH-H-HHHhCCCC----CCCCCHHHHHHHHHHHHh
Confidence 999985 47999999999764444 4 59999996 777999999999998874
No 20
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=9.6e-106 Score=874.49 Aligned_cols=424 Identities=27% Similarity=0.410 Sum_probs=384.5
Q ss_pred cceeeEEEEEECceEEEEeCCCCcc---eeEEEEcC-c------eeEEEEEEEeC-CeEEEEEecCCCCCCCCCeEEEcC
Q psy13480 14 EGRFGFVYAVSGPVVTAEKMSGSAM---YELVRVGY-F------ELVGEIIRLEG-DMATIQVYEETSGVTVGDPVLRTG 82 (615)
Q Consensus 14 ~~~~G~I~~I~Gpvv~a~g~~~~~~---~E~v~vg~-~------~l~GEVI~i~~-d~a~iqvye~t~Gl~~G~~V~~tg 82 (615)
.+..|+|++|.|++|++.|. .+.+ ||+|.+.. + .+.+||+++.+ +.+.+.+|++++||+.|++|..||
T Consensus 13 ~~~~G~V~~v~G~viev~~~-~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G~~V~~tg 91 (494)
T CHL00060 13 EKNLGRITQIIGPVLDVAFP-PGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTG 91 (494)
T ss_pred cccceEEEEEEccEEEEEec-CCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCCCEEEeCC
Confidence 45779999999999999996 5666 99999942 2 48999999999 999999999999999999999999
Q ss_pred CcceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeee
Q psy13480 83 KPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKH 162 (615)
Q Consensus 83 ~~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h 162 (615)
++++|++|++|||||+|++|||||+.++....
T Consensus 92 ~~~~vpvg~~lLGRVid~~G~piDg~~~~~~~------------------------------------------------ 123 (494)
T CHL00060 92 APLSVPVGGATLGRIFNVLGEPVDNLGPVDTR------------------------------------------------ 123 (494)
T ss_pred CcceeecchhhcCCEEeecCcccCCCCCCCCC------------------------------------------------
Confidence 99999999999999999999999987532110
Q ss_pred eecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccC
Q psy13480 163 KMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLG 241 (615)
Q Consensus 163 ~i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kG 241 (615)
++||+..+. ++.+|.++++||.||||+||+|+|||||
T Consensus 124 ------------------------------------------~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkG 161 (494)
T CHL00060 124 ------------------------------------------TTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRG 161 (494)
T ss_pred ------------------------------------------ccccccCCCcCchhcccccceeecCceeeeccCCcccC
Confidence 124554333 3678889999999999999999999999
Q ss_pred ceeeccCCCCCCcchhhHHhhhc-CCC--CEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCH
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY-SNS--DVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPV 318 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~-~~a--dviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~ 318 (615)
||++|||++|+|||+|+++++++ +++ |+|||++||||+||+.||++++.+...+... ..+++|||+|+||||+|+
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~--~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQ--NIAESKVALVYGQMNEPP 239 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccC--cccccceEEEEECCCCCH
Confidence 99999999999999999999987 655 9999999999999999999998764443321 356899999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHhCCC-cEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCC
Q psy13480 319 AAREASIYTGITLSEYFRDMGY-NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPD 397 (615)
Q Consensus 319 ~~R~~s~~tg~tiAEyfrd~G~-~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~ 397 (615)
.+|++++|+|+|+||||||+|+ ||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+.
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlERaG~~------- 312 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST------- 312 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHHhccCC-------
Confidence 9999999999999999999986 99999999999999999999999999999999999999999999999984
Q ss_pred CCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccch-hcchhhhhhccCcchHHHHHH
Q psy13480 398 REGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKY-MRALDDFYDKNHPEFVPLRTK 476 (615)
Q Consensus 398 ~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~-~~~~~~~~~~~~~~~~~~~~~ 476 (615)
.+||||+|++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+ ++.+.. ++|++++.+
T Consensus 313 ~~GSITai~tVl~~gdD~tdPI~d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~~~~~~v~------~~h~~~a~~ 386 (494)
T CHL00060 313 KEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVG------EEHYETAQR 386 (494)
T ss_pred CCCCeeEEEEEECCCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhhcccccCC------HHHHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999999999 666655 789999999
Q ss_pred HHHHHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCC------CCCccCCHHHHHHHHHHHHH
Q psy13480 477 VKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYS------PYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 477 ~~~~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~------~~d~~~~~~kq~~~L~~I~~ 544 (615)
++++|++|+|++++++++|...++++++..+.++++++ +||+|++|. ..++++++++++..|+.|+.
T Consensus 387 ~r~~la~y~e~e~li~~~g~~~ls~~~~~~i~~~~~i~-~fL~Q~~f~~e~ft~~~~~~~~~~~~~~~l~~i~~ 459 (494)
T CHL00060 387 VKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIE-RFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILS 459 (494)
T ss_pred HHHHHHHhHHHHHHHHHhCcccCCHHHHHHHHhHHHHH-HHhcCCcchhhcccCCCCcccCHHHHHHHHHHHhC
Confidence 99999999999999999998888899999999999885 999999884 24899999999999999885
No 21
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=2.7e-105 Score=869.33 Aligned_cols=472 Identities=22% Similarity=0.279 Sum_probs=409.1
Q ss_pred cceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCccc
Q psy13480 14 EGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGI 93 (615)
Q Consensus 14 ~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgL 93 (615)
....|+|.+|.|.++++.|+.++.+||+|.+. ++..|||+++++|.+.+++|+++.||+.|++|.+||++++||+|++|
T Consensus 4 ~~~~G~V~~v~~~ii~v~Gl~~~~~ge~~~i~-~~~~g~vi~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~l 82 (485)
T CHL00059 4 IVNTGTVLQVGDGIARIYGLDEVMAGELVEFE-DGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAY 82 (485)
T ss_pred eeeeEEEEEEeccEEEEeccccCCcCCEEEEC-CCCEEEEEEEcCCEEEEEEeeCCCCCCCCCEEEECCCcceEEcCHhh
Confidence 34679999999999999999899999999996 45899999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCcc
Q psy13480 94 LGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGT 173 (615)
Q Consensus 94 LGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g~ 173 (615)
||||+|++|||||+.++....
T Consensus 83 lGRVvd~lG~piDg~~~~~~~----------------------------------------------------------- 103 (485)
T CHL00059 83 LGRVVNALAKPIDGKGEISAS----------------------------------------------------------- 103 (485)
T ss_pred cCCEECCCCCeeCCCCCcCCC-----------------------------------------------------------
Confidence 999999999999987543210
Q ss_pred eeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccCCCCC
Q psy13480 174 VTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGC 252 (615)
Q Consensus 174 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~ 252 (615)
.+||+..+.| +.+|.++++||.||+|+||+|+|||+|||++|||++|+
T Consensus 104 -------------------------------~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~ 152 (485)
T CHL00059 104 -------------------------------ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQT 152 (485)
T ss_pred -------------------------------ccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCC
Confidence 0234444433 67889999999999999999999999999999999999
Q ss_pred Ccchh-hHHhhhcCCCCE-EEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhh
Q psy13480 253 GKTVI-SQALSKYSNSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGIT 330 (615)
Q Consensus 253 GKt~l-~~~la~~~~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~t 330 (615)
|||+| +.+|++++++|+ |||++||||++|+.+|++++.+ .++|+||++|+||||+|+.+|++++|+|+|
T Consensus 153 GKt~Lal~~I~~q~~~dv~cV~~~IGer~rev~e~~~~l~~---------~~~l~~tvvV~atad~~~~~r~~ap~~a~a 223 (485)
T CHL00059 153 GKTAVATDTILNQKGQNVICVYVAIGQKASSVAQVVTTLQE---------RGAMEYTIVVAETADSPATLQYLAPYTGAA 223 (485)
T ss_pred CHHHHHHHHHHhcccCCeEEEEEEecCCchHHHHHHHHhhc---------ccchhceEEEEeCCCCCHHHHHHHHHHHhh
Confidence 99999 889999999996 5999999999999999999854 688999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecC
Q psy13480 331 LSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSP 410 (615)
Q Consensus 331 iAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~ 410 (615)
|||||||+|+||||++||+||||+|+||||++++|||+++||||++|+.+++|+||||+++.. .++||||+||+|++
T Consensus 224 iAEyfr~~G~~VLlv~DdlTr~A~A~REisl~l~epPgr~gYP~~vF~~~srLlERag~~~~~---~~~GSITal~~V~~ 300 (485)
T CHL00059 224 LAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQ---LGEGSMTALPIVET 300 (485)
T ss_pred HHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhhcccCC---CCCcceEEEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999997531 24899999999999
Q ss_pred CCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHH
Q psy13480 411 PGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEI 490 (615)
Q Consensus 411 ~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i 490 (615)
+|||+++||++++++|+||||+|||+||++||||||||+.|+||+++.++. ++|++++.++|.+|++|+|++++
T Consensus 301 ~~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRvg~~aq~------~~~~~~a~~lr~~la~y~e~e~~ 374 (485)
T CHL00059 301 QAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQI------KAMKQVAGKLKLELAQFAELEAF 374 (485)
T ss_pred cCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCcccchhcCCchhhc------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred HHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHH-HHHHHHHHccccchhhhhHHHHH
Q psy13480 491 VQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFY-DMSRHAVESTAQSENKITWSVIR 569 (615)
Q Consensus 491 ~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fy-d~a~~ai~~g~~~~~~i~~~~i~ 569 (615)
+++ +.+.+++.|++ +.+++.++ +||+|+.+ +..++++|+..|.++...| |. ..+++...+...+ ..+++
T Consensus 375 ~~~-~~~~d~~~~~~-i~~~~~i~-~~L~Q~~~----~~~~~~e~~~~l~a~~~g~l~~--~~~~~v~~~~~~l-~~~~~ 444 (485)
T CHL00059 375 AQF-ASDLDKATQNQ-LARGQRLR-ELLKQSQS----APLTVEEQVATIYTGTNGYLDS--LEIGQVRKFLVEL-RTYLK 444 (485)
T ss_pred HHh-hcCCCHHHHHH-HHhHHHHH-HHhcCCCC----CCCCHHHHHHHHHHhccCCcCc--cCHHHHHHHHHHH-HHHHH
Confidence 998 66777666666 45677665 99999974 4489999999999886543 22 1222333343333 36777
Q ss_pred hhhhHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q psy13480 570 DSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAF 610 (615)
Q Consensus 570 ~~~~~~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f 610 (615)
+.++++...|...|.+ +++.+ +.+.+..+++.+.|
T Consensus 445 ~~~~~~~~~i~~~~~~--~~~~~----~~l~~~~~~~~~~~ 479 (485)
T CHL00059 445 TNKPQFQEIISSTKTF--TEEAE----ALLKEAIQEQLELF 479 (485)
T ss_pred hhhHHHHHHHHhcCCC--CHHHH----HHHHHHHHHHHHHH
Confidence 7788888888777754 22233 44444444444444
No 22
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=1.2e-105 Score=868.95 Aligned_cols=413 Identities=28% Similarity=0.429 Sum_probs=377.2
Q ss_pred eEEEEEECceEEEEeC-CCCcceeEEEEcC-ceeEEEEEE-EeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCcccc
Q psy13480 18 GFVYAVSGPVVTAEKM-SGSAMYELVRVGY-FELVGEIIR-LEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGIL 94 (615)
Q Consensus 18 G~I~~I~Gpvv~a~g~-~~~~~~E~v~vg~-~~l~GEVI~-i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgLL 94 (615)
|+|++|.||||.+++. ..+.+++.+.+++ +.+.+||++ ++++.+.+++|++|.||++|+.|..||++++|++|++||
T Consensus 1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~~~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~lL 80 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGREGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTL 80 (449)
T ss_pred CeEEEEEcCEEEEEeCCCCcchhheEEecCCCcEEEeeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhhc
Confidence 8999999999999984 3589999999985 679999999 999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCcce
Q psy13480 95 GSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTV 174 (615)
Q Consensus 95 GrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g~v 174 (615)
|||+|++|+|||+.++...
T Consensus 81 GRVlD~~G~PiD~~~~~~~------------------------------------------------------------- 99 (449)
T TIGR03305 81 SRMFDVFGNTIDRREPPKD------------------------------------------------------------- 99 (449)
T ss_pred CCEEccCccccCCCCCCCC-------------------------------------------------------------
Confidence 9999999999997753211
Q ss_pred eEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccCCCCCC
Q psy13480 175 TYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCG 253 (615)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~G 253 (615)
.++||+..+.| +.+|.++++||.||+|+||+|+||+||||++|||++|+|
T Consensus 100 -----------------------------~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~G 150 (449)
T TIGR03305 100 -----------------------------VEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVG 150 (449)
T ss_pred -----------------------------ccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCC
Confidence 01345555443 788999999999999999999999999999999999999
Q ss_pred cchhhHHhhhcCC---CCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhh
Q psy13480 254 KTVISQALSKYSN---SDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGIT 330 (615)
Q Consensus 254 Kt~l~~~la~~~~---adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~t 330 (615)
||+|+++++++.. +|+|||++||||++|++||++++.+ .++|+|||+|+||||+|+.+|++++|+|+|
T Consensus 151 Kt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~---------~~~l~rtvvv~~ts~~~~~~r~~~~~~a~t 221 (449)
T TIGR03305 151 KTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKE---------AGVLDNTVMVFGQMNEPPGARFRVGHTALT 221 (449)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhh---------ccccceEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 9999999998854 8999999999999999999999853 688999999999999999999999999999
Q ss_pred HHHHHHh-CCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeec
Q psy13480 331 LSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVS 409 (615)
Q Consensus 331 iAEyfrd-~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs 409 (615)
+|||||| +|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+ .++||||+|++|+
T Consensus 222 iAEyfrd~~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~-------~~~GSIT~i~~V~ 294 (449)
T TIGR03305 222 MAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIAT-------TSDGAITSIQAVY 294 (449)
T ss_pred HHHHHHHhcCCceEEEecChHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcC-------CCCcCeeEEEEEE
Confidence 9999999 9999999999999999999999999999999999999999999999999997 3589999999999
Q ss_pred CCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchh-cchhhhhhccCcchHHHHHHHHHHHHhHHHHH
Q psy13480 410 PPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYM-RALDDFYDKNHPEFVPLRTKVKEILQEEEDLS 488 (615)
Q Consensus 410 ~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~ 488 (615)
+||||++|||++++++|+||||+|||+||++||||||||+.|+||++ +.+.. ++|++++.+++++|++|+|++
T Consensus 295 ~~~dD~~dPi~d~~~silDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~------~~h~~~a~~~~~~l~~y~e~~ 368 (449)
T TIGR03305 295 VPADDFTDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVG------ERHYDLAREVRQTLAQYEELK 368 (449)
T ss_pred ccCCCCCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCCcchhhcCCcccCC------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 55554 789999999999999999999
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCC-------HHHHHHHHHHHHH
Q psy13480 489 EIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCP-------FYKTVGMLRNMIA 544 (615)
Q Consensus 489 ~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~-------~~kq~~~L~~I~~ 544 (615)
++++++|.+.+++.|+.++.+++.++ +||+|++|.. +.||+ +++|+...+.|++
T Consensus 369 ~li~~~g~~~l~~~~~~~i~~~~~i~-~fL~Q~~~~~-e~~t~~~g~~v~l~~tl~~~~~il~ 429 (449)
T TIGR03305 369 DIIAMLGLEQLSREDRRVVNRARRLE-RFLTQPFFTT-EQFTGMKGKTVSLEDALDGCERILN 429 (449)
T ss_pred HHHHhhCCccCCHHHHHHHHHHHHHH-HHhCCCCccc-ccccCCCCceeEHHHHHHHHHHHhc
Confidence 99999998899999999999999885 7999998876 55555 4555555555553
No 23
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=8e-105 Score=860.13 Aligned_cols=419 Identities=24% Similarity=0.383 Sum_probs=382.5
Q ss_pred eeeEEEEEECceEEEEeCCCCcceeEEEE--cCc-eeEEEEEEEeCCeEEEEEecCCCCCCC-CCeEEEcCCcceeecCc
Q psy13480 16 RFGFVYAVSGPVVTAEKMSGSAMYELVRV--GYF-ELVGEIIRLEGDMATIQVYEETSGVTV-GDPVLRTGKPLSVELGP 91 (615)
Q Consensus 16 ~~G~I~~I~Gpvv~a~g~~~~~~~E~v~v--g~~-~l~GEVI~i~~d~a~iqvye~t~Gl~~-G~~V~~tg~~lsv~lGp 91 (615)
.|++|.+|+|+++++.|++++++||+|.+ .++ ...|||++++++.+.+|+|++++||++ |+.|.+||++++|++|+
T Consensus 1 ~y~~v~~i~G~~i~~~g~~~~~~Ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v~vg~ 80 (466)
T TIGR01040 1 EYRTVSGVNGPLVILDNVKFPRFAEIVNLTLPDGTVRSGQVLEVSGNKAVVQVFEGTSGIDAKKTTCEFTGDILRTPVSE 80 (466)
T ss_pred CCccceEEEccEEEEECCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCeEEEEEcCCCCCcccCCCEEEECCCccEEEcCc
Confidence 36899999999999999889999999999 333 378999999999999999999999998 99999999999999999
Q ss_pred ccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCC
Q psy13480 92 GILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAK 171 (615)
Q Consensus 92 gLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~ 171 (615)
+|||||+|++|||||+.++....
T Consensus 81 ~lLGRVid~~G~piD~~~~~~~~--------------------------------------------------------- 103 (466)
T TIGR01040 81 DMLGRVFNGSGKPIDKGPPVLAE--------------------------------------------------------- 103 (466)
T ss_pred ccccCEECccccccCCCCCCCCC---------------------------------------------------------
Confidence 99999999999999986532110
Q ss_pred cceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCceeeccCCC
Q psy13480 172 GTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAF 250 (615)
Q Consensus 172 g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~ 250 (615)
++||+..+. ++.+|.++++||.||+|+||+|+|||+|||++|||++
T Consensus 104 ---------------------------------~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfags 150 (466)
T TIGR01040 104 ---------------------------------DYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAA 150 (466)
T ss_pred ---------------------------------ceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCC
Confidence 123444443 3677889999999999999999999999999999999
Q ss_pred CCCcchhhHHhhhcCC------CC---------EEEEEeecCcchHHHHHHHh-cccccccccCccccCcceEEEEEeCC
Q psy13480 251 GCGKTVISQALSKYSN------SD---------VIVYVGCGERGNEMAEVLRD-FPELTIEVDGVTESIMKRTTLVANTS 314 (615)
Q Consensus 251 G~GKt~l~~~la~~~~------ad---------viV~~~iGERg~Ev~e~~~~-f~~l~~~~~g~~~~~m~rtvlvanTs 314 (615)
|+|||+|+.||+++++ +| +|||+++||| +|+.+|+++ |. ..++|+|||+|+|||
T Consensus 151 GvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~~l~---------~~g~l~rtvvv~ats 220 (466)
T TIGR01040 151 GLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQDFE---------ENGSMERVCLFLNLA 220 (466)
T ss_pred CCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeee-hHHHHHHHHHHH---------hcCCcceEEEEEECC
Confidence 9999999999999988 88 9999999999 899998765 32 146799999999999
Q ss_pred CCCHHHHHHHHHHHhhHHHHHH-hCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhcccccc
Q psy13480 315 NMPVAAREASIYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL 393 (615)
Q Consensus 315 n~p~~~R~~s~~tg~tiAEyfr-d~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~ 393 (615)
|+||.+|++++|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||++.
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~l~~L~ERaG~~~-- 298 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVE-- 298 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHHHHHhhccccCC--
Confidence 9999999999999999999999 7999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhh-hhhccCcchHH
Q psy13480 394 GNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDD-FYDKNHPEFVP 472 (615)
Q Consensus 394 ~~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~-~~~~~~~~~~~ 472 (615)
.++||||+|++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+.. |+.+ ++|.+
T Consensus 299 ---~~~GSITai~tV~~~~dD~~~pI~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~~~v~~~~~~~--~~h~~ 373 (466)
T TIGR01040 299 ---GRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTR--KDHSD 373 (466)
T ss_pred ---CCCcceEEEEEEECCCCCCCCcchhhhhhhcceEEEECHHHHhCCCCCccCCccchhhccccccccCcCc--HHHHH
Confidence 25899999999999999999999999999999999999999999999999999999999998754 4332 68999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHH
Q psy13480 473 LRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRN 541 (615)
Q Consensus 473 ~~~~~~~~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~ 541 (615)
++.++..+|+++++|.+++.++|.+.+++.++.++.+++.+++.||+|++|+..+..+++++++.+|+.
T Consensus 374 ~a~~l~~~y~~~~~L~~ig~y~G~d~l~d~a~~~l~~~~~i~~~FL~Q~~~~~~~~~~~l~~~w~ll~~ 442 (466)
T TIGR01040 374 VSNQLYACYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFIAQGPYENRTIFESLDIAWQLLRI 442 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998899999998888888888888888774
No 24
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=5e-104 Score=854.97 Aligned_cols=422 Identities=28% Similarity=0.411 Sum_probs=384.7
Q ss_pred ccccCCcceeeEEEEEECceEEEEeCC-CCcceeEEEEcC--c-eeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCC
Q psy13480 8 MADEDREGRFGFVYAVSGPVVTAEKMS-GSAMYELVRVGY--F-ELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGK 83 (615)
Q Consensus 8 ~~~~~~~~~~G~I~~I~Gpvv~a~g~~-~~~~~E~v~vg~--~-~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~ 83 (615)
+......+.+|+|.+|.|++|+++|.. .+++||+|.+.. + .+.|||++++++++.+++|++|.||+.|++|.+||+
T Consensus 9 ~~~~~~~~~~g~v~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~ 88 (442)
T PRK08927 9 IGDIDTLVIYGRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRGDRALLMPFGPLEGVRRGCRAVIANA 88 (442)
T ss_pred HhcCCcceeeeEEEEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCccCCCCCCEEEeCCC
Confidence 344567889999999999999999984 799999999942 3 489999999999999999999999999999999999
Q ss_pred cceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeee
Q psy13480 84 PLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHK 163 (615)
Q Consensus 84 ~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~ 163 (615)
+++|++|++|||||+|++|+|||+.++.... +
T Consensus 89 ~~~v~vg~~llGRVid~~G~piDg~~~~~~~--------------~---------------------------------- 120 (442)
T PRK08927 89 AAAVRPSRAWLGRVVNALGEPIDGKGPLPQG--------------P---------------------------------- 120 (442)
T ss_pred ccEEECChhhCCCEEccCCCCccCCCCCCCC--------------c----------------------------------
Confidence 9999999999999999999999987532110 0
Q ss_pred ecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCc
Q psy13480 164 MIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGG 242 (615)
Q Consensus 164 i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq 242 (615)
.+||+..+. ++.+|.++++||.||+|+||+||||++||
T Consensus 121 -----------------------------------------~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gq 159 (442)
T PRK08927 121 -----------------------------------------VPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQ 159 (442)
T ss_pred -----------------------------------------ccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCC
Confidence 123555443 37889999999999999999999999999
Q ss_pred eeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHH
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~ 322 (615)
+++|+|++|+|||+|+++|+++.++|++||++||||+||++||+++.- .+..|+|||+|+||||+|+.+|+
T Consensus 160 ri~I~G~sG~GKTtLL~~I~~~~~~d~~v~~~iGER~rEv~ef~~~~l---------~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 160 RMGIFAGSGVGKSVLLSMLARNADADVSVIGLIGERGREVQEFLQDDL---------GPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCEEEEEEEecCcHHHHHHHHHHh---------hccCceeEEEEEECCCCCHHHHH
Confidence 999999999999999999999999999999999999999999997541 13459999999999999999999
Q ss_pred HHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCce
Q psy13480 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSV 402 (615)
Q Consensus 323 ~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSI 402 (615)
+++|+|+|+||||||+|+|||||+||+||||+|+||||+++||||+++|||||+|+.||+||||||+.. +++|||
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~-----~~~GSI 305 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGP-----IGEGTI 305 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCC-----CCCeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999953 468999
Q ss_pred EEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHH
Q psy13480 403 SIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQ 482 (615)
Q Consensus 403 T~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 482 (615)
|+|++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.. ++|++++.++|++|+
T Consensus 306 T~i~tVlv~gdD~~dpi~d~~~~i~Dg~ivLsr~La~~g~~PAIDvl~S~SR~~~~~~~------~~~~~~a~~~r~~l~ 379 (442)
T PRK08927 306 TGLFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCND------PEENPLVRRARQLMA 379 (442)
T ss_pred eeeeeeEccCCCCCCchhhhhhccccEEEEEcHHHHhCCCCCccCCcccccccccccCC------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976 899999999999999
Q ss_pred hHHHHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHH
Q psy13480 483 EEEDLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 483 ~~~el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~ 544 (615)
+|+++++++++++ .+.+++.|+++. +.+.++ +||+|+. +++|++++++.+|+.++.
T Consensus 380 ~y~e~edli~lg~y~~g~d~~~d~ai~-~~~~i~-~fL~Q~~----~e~~~~~~~~~~l~~l~~ 437 (442)
T PRK08927 380 TYADMEELIRLGAYRAGSDPEVDEAIR-LNPALE-AFLRQGK----DEATSLAEGYARLAQILG 437 (442)
T ss_pred HHHHHHHHHHhhCCcCCCCHHHHHHHH-ccHHHH-HhcCCCC----CCCCCHHHHHHHHHHHhc
Confidence 9999999999977 488889999855 444454 9999996 888999999999998874
No 25
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=7.2e-104 Score=855.79 Aligned_cols=417 Identities=28% Similarity=0.420 Sum_probs=379.7
Q ss_pred ccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEc--Cce--eEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCC
Q psy13480 8 MADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVG--YFE--LVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGK 83 (615)
Q Consensus 8 ~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg--~~~--l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~ 83 (615)
+......+.+|+|.+|.|++++++|+ ++++||+|.+. ++. +.||||+++++++.+|+|++|.||++|++|.+||+
T Consensus 16 ~~~~~~~~~~G~V~~v~g~~i~~~g~-~~~~ge~~~i~~~~g~~~~~~eVv~~~~~~~~l~~~~~t~gi~~g~~V~~tg~ 94 (441)
T PRK09099 16 LAALPAVRRTGKVVEVIGTLLRVSGL-DVTLGELCELRQRDGTLLQRAEVVGFSRDVALLSPFGELGGLSRGTRVIGLGR 94 (441)
T ss_pred HhcCCcceEeeEEEEEECCEEEEecc-CCCCCCEEEEecCCCCeeeEEEEEEEECCEEEEEEccCCcCCCCCCEEEeCCC
Confidence 34456788899999999999999998 59999999993 232 78999999999999999999999999999999999
Q ss_pred cceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeee
Q psy13480 84 PLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHK 163 (615)
Q Consensus 84 ~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~ 163 (615)
+++|++|++|||||||++|||||+.++... +.
T Consensus 95 ~~~v~vg~~lLGrV~d~~G~piD~~~~~~~---------------~~--------------------------------- 126 (441)
T PRK09099 95 PLSVPVGPALLGRVIDGLGEPIDGGGPLDC---------------DE--------------------------------- 126 (441)
T ss_pred ccEEEeccccccCEEcccCCccCCCCCCcc---------------cc---------------------------------
Confidence 999999999999999999999998643211 00
Q ss_pred ecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCc
Q psy13480 164 MIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGG 242 (615)
Q Consensus 164 i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq 242 (615)
+||+..+. ++.+|.++++||.||+++||.++|+++||
T Consensus 127 ------------------------------------------~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq 164 (441)
T PRK09099 127 ------------------------------------------LVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQ 164 (441)
T ss_pred ------------------------------------------ccccccCCCChhhcCCcccccCCCceeccceeeecCCC
Confidence 12333222 25667788999999999999999999999
Q ss_pred eeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHH
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~ 322 (615)
+++|+|++|+|||+|+++++++.++|++||++||||++|+++|++++.. .+.|+||++|+||||+|+.+|+
T Consensus 165 ~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ev~ef~~~~~~---------~~~l~rtvvv~~tsd~p~~~r~ 235 (441)
T PRK09099 165 RMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGREVREFIELILG---------EDGMARSVVVCATSDRSSIERA 235 (441)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChHHHHHHHHHHhh---------cCCcceEEEEEECCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999998732 5679999999999999999999
Q ss_pred HHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCce
Q psy13480 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSV 402 (615)
Q Consensus 323 ~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSI 402 (615)
+++|+|+|+||||||+|+|||||+||+||||+|+||||+++||||+++|||||+|+.||+||||||+ .++|||
T Consensus 236 ~a~~~a~tiAEyfrd~G~~VLl~~DslTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ERag~-------~~~GSI 308 (441)
T PRK09099 236 KAAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGM-------GETGSI 308 (441)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHHHhhcC-------CCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 248999
Q ss_pred EEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHH
Q psy13480 403 SIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQ 482 (615)
Q Consensus 403 T~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 482 (615)
|+|++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++ ++|++++.++|++|+
T Consensus 309 T~i~tVl~~~dd~~dpI~d~~~~i~DG~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~------~~~~~~a~~lr~~la 382 (441)
T PRK09099 309 TALYTVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVP------REHVQAAGRLRQLLA 382 (441)
T ss_pred heeEEEEecCCCcCCcchhhhheecceEEEEcHHHHhCCCCCccCCccccCccchhcCC------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987 799999999999999
Q ss_pred hHHHHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 483 EEEDLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 483 ~~~el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
+|+|+++++++++ .+.+++.|++ +++++.++ +||+|+. +++|++++|+.+|+.|+
T Consensus 383 ~y~e~e~li~iG~y~~g~d~~~d~~-i~~~~~i~-~fL~Q~~----~~~~~~~~t~~~l~~~~ 439 (441)
T PRK09099 383 KHREVETLLQVGEYRAGSDPVADEA-IAKIDAIR-DFLSQRT----DEYSDPDATLAALAELS 439 (441)
T ss_pred hhHHHHHHHHhcCccCCCChhHHHH-HHHHHHHH-HHhCCCC----CCCCCHHHHHHHHHHHh
Confidence 9999999999843 5667777776 44777675 9999994 88999999999999876
No 26
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=5.3e-102 Score=840.32 Aligned_cols=411 Identities=27% Similarity=0.402 Sum_probs=376.3
Q ss_pred CcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCcc
Q psy13480 13 REGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPG 92 (615)
Q Consensus 13 ~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpg 92 (615)
..+.+|+|.+|.|+++++.+ .++++||+|.+..+++.|||+++++|++.+|+|++|+||++|++|.+||++++|++|++
T Consensus 26 ~~~~~G~v~~v~g~~~~~~~-~~~~~ge~~~i~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~v~~tg~~~~v~vg~~ 104 (440)
T PRK06820 26 GLRYRGPIVEIGPTLLRASL-PGVAQGELCRIEPQGMLAEVVSIEQEMALLSPFASSDGLRCGQWVTPLGHMHQVQVGAD 104 (440)
T ss_pred ceeEeeEEEEEECcEEEEEE-CCCCcCCEEEEecCCeEEEEEEEeCCeEEEEEccCccCCCCCCEEEECCCCcEEEechh
Confidence 56788999999999999996 58999999999644589999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCc
Q psy13480 93 ILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKG 172 (615)
Q Consensus 93 LLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g 172 (615)
|||||||++|||||+.+... ..|
T Consensus 105 llGrv~d~~G~pld~~~~~~-----------------~~~---------------------------------------- 127 (440)
T PRK06820 105 LAGRILDGLGAPIDGGPPLT-----------------GQW---------------------------------------- 127 (440)
T ss_pred hcCCEECccCCccCCCCCCC-----------------ccc----------------------------------------
Confidence 99999999999999764210 011
Q ss_pred ceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCceeeccCCCC
Q psy13480 173 TVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFG 251 (615)
Q Consensus 173 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G 251 (615)
||+..++ ++.+|.++++||.||+|+||.|+|+++||+++|+|++|
T Consensus 128 ----------------------------------~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G~sG 173 (440)
T PRK06820 128 ----------------------------------RELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAG 173 (440)
T ss_pred ----------------------------------ccccCCCCChhhcCCchhhccCCCceecceEEecCCCEEEEECCCC
Confidence 1222222 25567789999999999999999999999999999999
Q ss_pred CCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhH
Q psy13480 252 CGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITL 331 (615)
Q Consensus 252 ~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~ti 331 (615)
+|||+|+++|+++.++|++||++||||++|+.+|++++.. .+.|+||++|+||||+|+.+|++++|+|+|+
T Consensus 174 ~GKStLl~~I~~~~~~dv~V~~~iGergrEv~ef~e~~l~---------~~~~~rtvvv~atsd~p~~~r~~a~~~a~ti 244 (440)
T PRK06820 174 VGKSTLLGMLCADSAADVMVLALIGERGREVREFLEQVLT---------PEARARTVVVVATSDRPALERLKGLSTATTI 244 (440)
T ss_pred CChHHHHHHHhccCCCCEEEEEEEccChHHHHHHHHHhhc---------cCCceeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998732 5789999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCC
Q psy13480 332 SEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPP 411 (615)
Q Consensus 332 AEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ 411 (615)
||||||+|+|||||+||+||||+|+||||+++||||+++|||||+|+.||+||||||+. ++||||+|+||++|
T Consensus 245 AEyfrd~G~~VLl~~Dsltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~-------~~GSIT~i~tVl~~ 317 (440)
T PRK06820 245 AEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNS-------DRGSITAFYTVLVE 317 (440)
T ss_pred HHHHHHcCCCEEEEccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC-------CCcceeEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999983 58999999999999
Q ss_pred CCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHHH
Q psy13480 412 GGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIV 491 (615)
Q Consensus 412 ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i~ 491 (615)
||||+|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.. ++|++++.++|++|++|+|+++|+
T Consensus 318 gdD~~dpI~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~------~~~~~~a~~~r~~l~~y~e~~~li 391 (440)
T PRK06820 318 GDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVS------AGQLAMAQKLRRMLACYQEIELLV 391 (440)
T ss_pred CCCCCCcchhhhccccceEEEECHHHHhCCCCCccCCcccccccchhhCC------HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999998877 899999999999999999999999
Q ss_pred HHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 492 QLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 492 ~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
++++ .+.+++.|+++....+ .++||+|+. ++++++++++..|+.++
T Consensus 392 ~~G~y~~g~d~~~d~~i~~~~~--i~~fL~Q~~----~e~~~~~~~~~~l~~~~ 439 (440)
T PRK06820 392 RVGEYQAGEDLQADEALQRYPA--ICAFLQQDH----SETAHLETTLEHLAQVV 439 (440)
T ss_pred HhhCccCCCCHHHHHHHHhhHH--HHHHhCCCC----CCCCCHHHHHHHHHHHh
Confidence 9854 4788888888765444 459999995 77799999999998875
No 27
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.4e-101 Score=837.70 Aligned_cols=420 Identities=25% Similarity=0.375 Sum_probs=381.1
Q ss_pred ccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcC--c----eeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEc
Q psy13480 8 MADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGY--F----ELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRT 81 (615)
Q Consensus 8 ~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~--~----~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~t 81 (615)
+......+.+|+|.+|.|++|++.|+ .+++||+|.|+. + .+.|||++++++.+.+|+|++++||++|++|++|
T Consensus 19 ~~~~~~~~~~g~v~~v~g~~~~~~g~-~~~~ge~c~i~~~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~t 97 (451)
T PRK05688 19 ISLPAQPVVEGRLLRMVGLTLEAEGL-RAAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAPGARVVPL 97 (451)
T ss_pred HhcCCccceeeEEEEEEecEEEEecC-CCCCCCEEEEecCCCccccceEEEEEEEcCCEEEEEEccCccCCCCCCEEEEC
Confidence 34456678899999999999999997 599999999942 2 4899999999999999999999999999999999
Q ss_pred CCcceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceee
Q psy13480 82 GKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVK 161 (615)
Q Consensus 82 g~~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~ 161 (615)
|++++|++|++|||||+|++|||||+.++.... .
T Consensus 98 g~~~~v~vg~~llGRV~d~~G~plD~~~~~~~~----------------~------------------------------ 131 (451)
T PRK05688 98 ADTGRLPMGMSMLGRVLDGAGRALDGKGPMKAE----------------D------------------------------ 131 (451)
T ss_pred CCccEEEecccccCCEEeccCceecCCCCCCcc----------------c------------------------------
Confidence 999999999999999999999999987533210 0
Q ss_pred eeecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeecccccccc
Q psy13480 162 HKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVL 240 (615)
Q Consensus 162 h~i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~k 240 (615)
+||+..+. ++.+|.++++||.||+|+||.||||++
T Consensus 132 --------------------------------------------~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~ 167 (451)
T PRK05688 132 --------------------------------------------WVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGR 167 (451)
T ss_pred --------------------------------------------eecccCCCCCHHHcccccCCcccceeeecceEEecC
Confidence 12333332 256788889999999999999999999
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHH
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAA 320 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~ 320 (615)
||+++|+|++|+|||+|+++|+++.++|++|+++||+|++|+++|++++.. ...|+|||+|+||||+|+.+
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~~~~~~~~~---------~~~l~rsvvv~atsd~~p~~ 238 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILG---------EEGLKRSVVVASPADDAPLM 238 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHHHHHHHHhh---------cCCccEEEEEEECCCCCHHH
Confidence 999999999999999999999999999999999999999999999998742 57799999999999999999
Q ss_pred HHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCC
Q psy13480 321 REASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREG 400 (615)
Q Consensus 321 R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~G 400 (615)
|..++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+.+ .++|
T Consensus 239 r~~a~~~a~aiAEyfrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERag~~~-----~~~G 313 (451)
T PRK05688 239 RLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAE-----PGGG 313 (451)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHhcCCC-----CCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999863 2489
Q ss_pred ceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHH
Q psy13480 401 SVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEI 480 (615)
Q Consensus 401 SIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (615)
|||+||+|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.++. ++|++++.++|++
T Consensus 314 SITai~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~------~~~~~~a~~~r~~ 387 (451)
T PRK05688 314 SITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVD------PEHLRRAQRFKQL 387 (451)
T ss_pred eeeEEEEEEecCCCCCCchHHHHHhhccEEEEEcHHHHhCCCCCccCCccccCccchhhCC------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred HHhHHHHHHHHHHh--cCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHH
Q psy13480 481 LQEEEDLSEIVQLV--GKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 481 L~~~~el~~i~~~~--g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~ 544 (615)
|++|+++++++++. +.+.+++.|+++....+ + ++||+|+. ++.+++++++..|..|+.
T Consensus 388 la~y~~~~dli~~g~y~~g~d~~~d~ai~~~~~-i-~~fL~Q~~----~e~~~~~~~~~~l~~~~~ 447 (451)
T PRK05688 388 WSRYQQSRDLISVGAYVAGGDPETDLAIARFPH-L-VQFLRQGL----RENVSLAQSREQLAAIFA 447 (451)
T ss_pred HHHHHHHHHHHHHhCccCCCCHHHHHHHHhhHH-H-HHHhCCCC----CCCCCHHHHHHHHHHHhc
Confidence 99999888888885 36788888888775444 4 59999996 677999999999998863
No 28
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=3.9e-101 Score=839.43 Aligned_cols=466 Identities=14% Similarity=0.170 Sum_probs=398.2
Q ss_pred eEEEEEECceEEEEeCCCCcceeEEEEcC-ceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCcccccc
Q psy13480 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGY-FELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGS 96 (615)
Q Consensus 18 G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~-~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgLLGr 96 (615)
-+|.+|.|.++++.|+.++++||+|.+.+ +...|+|+++++|.+.+++|+++.||+.|++|.+||++++|++|++||||
T Consensus 3 ~~V~~v~~~i~~v~Gl~~~~~ge~~~~~~~~~~~g~V~~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~lLGR 82 (507)
T PRK07165 3 PKIKSIFDYIVEVKGEYDYQQNQFFTLKNNPNVKAFVISATEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEYFGK 82 (507)
T ss_pred CEEEEEeceEEEEEcccCCCcCCEEEECCCCeEEEEEEEEeCCeEEEEEccCccCCCCCCEEEECCCccEEECCccccCC
Confidence 37999999999999998999999999963 34899999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCcceeE
Q psy13480 97 IFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTY 176 (615)
Q Consensus 97 I~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g~v~~ 176 (615)
|+|++|||||+.+++... ..|
T Consensus 83 Vvd~lG~piDg~g~i~~~---------------~~~-------------------------------------------- 103 (507)
T PRK07165 83 IIDIDGNIIYPEAQNPLS---------------KKF-------------------------------------------- 103 (507)
T ss_pred EECCCCcccCCCCCCCcc---------------ccc--------------------------------------------
Confidence 999999999987643210 000
Q ss_pred ecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccCCCCCCcc
Q psy13480 177 IAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT 255 (615)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt 255 (615)
....||+..+.| +.+|.++++||.||+|+||+|+|||||||++|||++|||||
T Consensus 104 --------------------------~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT 157 (507)
T PRK07165 104 --------------------------LPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKT 157 (507)
T ss_pred --------------------------ccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCcc
Confidence 001235555443 78899999999999999999999999999999999999999
Q ss_pred hh-hHHhhhcCCCCE-EEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHH
Q psy13480 256 VI-SQALSKYSNSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSE 333 (615)
Q Consensus 256 ~l-~~~la~~~~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAE 333 (615)
++ +.+|++++++|+ |||++||||++|+.+|+++|.+ .++|+||++|++||| |+.+|++++|+|+|+||
T Consensus 158 ~lal~~I~~q~~~dv~~V~~~IGer~~ev~~~~~~l~~---------~gal~~tvvV~atsd-~~~~r~~ap~~a~tiAE 227 (507)
T PRK07165 158 HIALNTIINQKNTNVKCIYVAIGQKRENLSRIYETLKE---------HDALKNTIIIDAPST-SPYEQYLAPYVAMAHAE 227 (507)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCChHHHHHHHHHhhh---------cCceeeeEEEEeCCC-CHHHHHHHHHHHHHHHH
Confidence 99 689999999997 6999999999999999999864 688999999999996 99999999999999999
Q ss_pred HHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCC
Q psy13480 334 YFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGG 413 (615)
Q Consensus 334 yfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~gg 413 (615)
||||+ +|||+|+||+||||+|+||||++++|||+++|||+|+|+.||+||||||+++ ++||||++++|++|+|
T Consensus 228 yfrd~-~dVLlv~DdLTr~A~A~REisLllgepPgregYPg~vF~~~srLlERAg~~~------g~GSITalpiV~t~~d 300 (507)
T PRK07165 228 NISYN-DDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFK------NRKTITALPILQTVDN 300 (507)
T ss_pred HHHhc-CceEEEEcChHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHhccCCC------CCCceEEEEEEECCCC
Confidence 99999 9999999999999999999999999999999999999999999999999973 4699999999999999
Q ss_pred CCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHHHHH
Q psy13480 414 DFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQL 493 (615)
Q Consensus 414 D~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i~~~ 493 (615)
|+++||+++++||+||||+|||+||++||||||||+.|+||+++.++. +.|.+++..+|.+|++|+|++++.++
T Consensus 301 Dis~pIpdnv~sItDGqIvLsr~L~~~G~~PAIDvl~SvSRv~~~~q~------~~~~~~a~~~r~~la~Y~e~e~~~~~ 374 (507)
T PRK07165 301 DITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQS------KTITKVAGEISKIYRAYKRQLKLSML 374 (507)
T ss_pred CCCCcchhhhccccCeEEEEcHHHHhCCCCCCcCCccchhhccccccC------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877 88999999999999999999999998
Q ss_pred hcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHH-HHHHHHHHccccchhhhhHHHHHhhh
Q psy13480 494 VGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFY-DMSRHAVESTAQSENKITWSVIRDSM 572 (615)
Q Consensus 494 ~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fy-d~a~~ai~~g~~~~~~i~~~~i~~~~ 572 (615)
|.+ ++++++..++++++++ +||+|+.|+++ +.++|+..+.++...| +.- ..+++-..++..+. .. +...
T Consensus 375 -~~~-ld~~~~~~l~~g~~i~-~~L~Q~~~~~~----~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~-~~-~~~~ 444 (507)
T PRK07165 375 -DYD-LNKETSDLLFKGKMIE-KMFNQKGFSLY----SYRFVLLISKLISWGLLKDV-KDEQKALDFIDYLI-EN-DPDA 444 (507)
T ss_pred -HHh-CCHHHHHHHHHHHHHH-HHhCCCCCCCC----CHHHHHHHHHHHHhhhhhhC-CcHHHHHHHHHHHH-Hh-hhhh
Confidence 554 7888888899999886 99999987774 5677777666654433 211 01122222322222 22 5556
Q ss_pred hHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH
Q psy13480 573 SNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDI 606 (615)
Q Consensus 573 ~~~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i 606 (615)
+++..+|..-+.+ +++-+++.|.-++++.
T Consensus 445 ~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~ 473 (507)
T PRK07165 445 KKIFNKIKNNEDV-----DDELMKNYFAFLLNQY 473 (507)
T ss_pred HHHHHHHHhcCCC-----CHHHHHHHHHHHHHHH
Confidence 6777777655543 2445566666555554
No 29
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.3e-101 Score=834.20 Aligned_cols=405 Identities=28% Similarity=0.444 Sum_probs=373.7
Q ss_pred eEEEEEECceEEEEeCCCCcceeEEEEc--Cc-eeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCcccc
Q psy13480 18 GFVYAVSGPVVTAEKMSGSAMYELVRVG--YF-ELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGIL 94 (615)
Q Consensus 18 G~I~~I~Gpvv~a~g~~~~~~~E~v~vg--~~-~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgLL 94 (615)
|+|.+|.|++|+++|+ ++++||+|.+. ++ .+.|||++++++.+.+++|++|.||++|+.|++||++++|++|++||
T Consensus 1 G~v~~v~g~~v~v~g~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~ll 79 (411)
T TIGR03496 1 GRVTRVVGLVLEAVGL-RAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLL 79 (411)
T ss_pred CEEEEEECcEEEEEeC-CCCcCCEEEEEcCCCCeEEEEEEEecCCEEEEEEccCccCCCCCCEEEECCCccEEEcchhhc
Confidence 7999999999999998 89999999995 23 58999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCcce
Q psy13480 95 GSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTV 174 (615)
Q Consensus 95 GrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g~v 174 (615)
|||||++|||||+.++... .
T Consensus 80 GrVid~~G~pld~~~~~~~---------------~--------------------------------------------- 99 (411)
T TIGR03496 80 GRVIDGLGRPLDGKGPLDA---------------G--------------------------------------------- 99 (411)
T ss_pred CCEECCCCCCcCCCCCCCc---------------c---------------------------------------------
Confidence 9999999999997643210 0
Q ss_pred eEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCceeeccCCCCCC
Q psy13480 175 TYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCG 253 (615)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~G 253 (615)
++||+..+. ++.+|.++++|+.||+|+||.++|+++||+++|+|++|+|
T Consensus 100 ------------------------------~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~G 149 (411)
T TIGR03496 100 ------------------------------ERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVG 149 (411)
T ss_pred ------------------------------cccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCC
Confidence 135555543 4788999999999999999999999999999999999999
Q ss_pred cchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHH
Q psy13480 254 KTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSE 333 (615)
Q Consensus 254 Kt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAE 333 (615)
||+|+++|+++.++|++||++||||++|+.+|++++.+ .+.|+|||+|+||||+|+.+|++++|+|+|+||
T Consensus 150 KTtLl~~I~~~~~~~~~vi~~iGer~~ev~e~~~~~~~---------~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAE 220 (411)
T TIGR03496 150 KSTLLGMMARYTEADVVVVGLIGERGREVKEFIEDILG---------EEGLARSVVVAATADESPLMRLRAAFYATAIAE 220 (411)
T ss_pred HHHHHHHHhcCCCCCEEEEEEEecChHHHHHHHHHHhh---------CCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998742 678999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCC
Q psy13480 334 YFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGG 413 (615)
Q Consensus 334 yfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~gg 413 (615)
||||+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||++. +++||||+|++|++|||
T Consensus 221 yfr~~G~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~-----~~~GSIT~~~tv~~~~d 295 (411)
T TIGR03496 221 YFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGE-----EGKGSITAFYTVLVEGD 295 (411)
T ss_pred HHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcccC-----CCCcceeEEEEEEccCC
Confidence 9999999999999999999999999999999999999999999999999999999973 46899999999999999
Q ss_pred CCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHHHHH
Q psy13480 414 DFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQL 493 (615)
Q Consensus 414 D~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i~~~ 493 (615)
|++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.. ++|++++.++|++|++|+|+++++++
T Consensus 296 d~~dpi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~~~------~~~~~~a~~~r~~l~~y~e~~~l~~~ 369 (411)
T TIGR03496 296 DQQDPIADAARAILDGHIVLSRELAEQGHYPAIDILASISRVMPDVVS------PEHRQAARRFKQLLSRYQENRDLISI 369 (411)
T ss_pred CCCCcchhhhcccccEEEEEchhHHhCCCCCccCCCcccccchhhhCC------HHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998876 89999999999999999999999998
Q ss_pred hc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHH
Q psy13480 494 VG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGML 539 (615)
Q Consensus 494 ~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L 539 (615)
.+ .+.+++.|++ +.+++++ ++||+|+. ++.+++++++..|
T Consensus 370 g~y~~g~d~~~d~~-i~~~~~i-~~fl~Q~~----~~~~~~~~~~~~l 411 (411)
T TIGR03496 370 GAYQAGSDPELDQA-IALYPRI-EAFLQQGM----RERASFEESLEAL 411 (411)
T ss_pred cCCcCCCCHHHHHH-HHHHHHH-HHHhCCCC----CCCCCHHHHHhhC
Confidence 65 4677778887 5677777 59999997 5668899888754
No 30
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=3.3e-101 Score=832.68 Aligned_cols=417 Identities=27% Similarity=0.426 Sum_probs=381.7
Q ss_pred cccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcce
Q psy13480 7 KMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLS 86 (615)
Q Consensus 7 ~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ls 86 (615)
||-...+.+.+|+|.+|.|++|++.+ .++++||+|.+..+++.|||++++++.+.+|+|++|+||++|++|.+||++++
T Consensus 12 ~~~~~~~~~~~G~v~~v~g~~~~~~~-~~~~~ge~~~i~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~ 90 (433)
T PRK07594 12 KYPPPDGYCRWGRIQDVSATLLNAWL-PGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQ 90 (433)
T ss_pred CCCCCCccceeeEEEEEECCEEEEEE-CCcCCCCEEEEecCCeEEEEEEEcCCeEEEEEccCCcCCCCCCEEEeCCCccE
Confidence 45555667889999999999999996 58999999999545689999999999999999999999999999999999999
Q ss_pred eecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecC
Q psy13480 87 VELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIM 166 (615)
Q Consensus 87 v~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~ 166 (615)
|++|++|||||||++|||||+.+... ..|
T Consensus 91 v~vg~~llGrVid~~G~pld~~~~~~-----------------~~~---------------------------------- 119 (433)
T PRK07594 91 VPVGEALLGRVIDGFGRPLDGRELPD-----------------VCW---------------------------------- 119 (433)
T ss_pred EEeChhhccCEEcccCCCcCCCCCCc-----------------ccc----------------------------------
Confidence 99999999999999999999764310 012
Q ss_pred CCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCC-CCCcccCCCCCCccccceeeeccccccccCceee
Q psy13480 167 PPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQ-PRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTA 245 (615)
Q Consensus 167 pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~-~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~ 245 (615)
||+.. +.++.+|.++++||.||+|+||.++|+++||+++
T Consensus 120 ----------------------------------------~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~Gqrig 159 (433)
T PRK07594 120 ----------------------------------------KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVG 159 (433)
T ss_pred ----------------------------------------cccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEE
Confidence 12222 2235678889999999999999999999999999
Q ss_pred ccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHH
Q psy13480 246 IPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASI 325 (615)
Q Consensus 246 I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~ 325 (615)
|+|++|+|||+|+++|+++.++|.+||++||||++|+.+|++++++ .+.++||++|+||||+|+.+|++++
T Consensus 160 I~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv~efl~~~~~---------~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 160 IFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLS---------EETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred EECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchHHHHHHHHhhc---------cCCcceEEEEEECCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999998753 4679999999999999999999999
Q ss_pred HHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEE
Q psy13480 326 YTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIV 405 (615)
Q Consensus 326 ~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i 405 (615)
|+|+|+||||||+|+|||||+||+||||+|+||||+++||||+++|||||+|+.||+||||||. .++||||+|
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~-------~~~GSIT~~ 303 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-------GEKGSITAF 303 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcC-------CCCcchhee
Confidence 9999999999999999999999999999999999999999999999999999999999999996 358999999
Q ss_pred EeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHH
Q psy13480 406 GAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEE 485 (615)
Q Consensus 406 ~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 485 (615)
++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.++. ++|++++.++|++|++|+
T Consensus 304 ~tVl~~gdD~~dpi~d~~~~ilDG~IvLsr~la~~g~yPAIDvl~S~SR~~~~~~~------~~h~~~a~~~r~~la~y~ 377 (433)
T PRK07594 304 YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS------HEHRQLAAILRRCLALYQ 377 (433)
T ss_pred eeeeecCCCCCCchHHHhhhhcceEEEEcHHHHhCCCCCccCCcccccccchhhCC------HHHHHHHHHHHHHHHcch
Confidence 99999999999999999999999999999999999999999999999999999987 899999999999999999
Q ss_pred HHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 486 DLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 486 el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
|+++|++++. .+.+++.|+++-...+ + ++||+|+. ++.+++++++..|+.|+
T Consensus 378 e~e~li~~G~y~~g~d~~~d~ai~~~~~-i-~~fl~Q~~----~~~~~~~~~~~~l~~~~ 431 (433)
T PRK07594 378 EVELLIRIGEYQRGVDTDTDKAIDTYPD-I-CTFLRQSK----DEVCGPELLIEKLHQIL 431 (433)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHhhHH-H-HHHhCCCC----CCCCCHHHHHHHHHHHh
Confidence 9999999854 4899999999654443 4 59999996 77799999999999876
No 31
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=3.5e-101 Score=829.98 Aligned_cols=405 Identities=22% Similarity=0.334 Sum_probs=371.2
Q ss_pred ceeeEEEEEECceEEEEeCCCCcceeEEEEc--CceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCcc
Q psy13480 15 GRFGFVYAVSGPVVTAEKMSGSAMYELVRVG--YFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPG 92 (615)
Q Consensus 15 ~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg--~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpg 92 (615)
..+|+|.+|.||+|.+++ +++.+||+|.+. ++.+.|||++++++.+.+|+|++|+||+.|++|.+||++++|++|++
T Consensus 3 ~~~g~v~~i~G~~v~v~~-~~~~~ge~~~i~~~~~~~~geVi~~~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg~~ 81 (436)
T PRK02118 3 KIYTKITDITGNVITVEA-EGVGYGELATVERKDGSSLAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSES 81 (436)
T ss_pred ceeEEEEEEECcEEEEEe-CCCCCCCEEEEEcCCCCEEEEEEEEcCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcCcc
Confidence 468999999999999999 579999999995 34689999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCc
Q psy13480 93 ILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKG 172 (615)
Q Consensus 93 LLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g 172 (615)
|||||||++|||||+.++....
T Consensus 82 lLGRV~d~~G~PiD~~~~~~~~---------------------------------------------------------- 103 (436)
T PRK02118 82 LLGRRFNGSGKPIDGGPELEGE---------------------------------------------------------- 103 (436)
T ss_pred ccCCEEccCCcccCCCCCCCcc----------------------------------------------------------
Confidence 9999999999999976533110
Q ss_pred ceeEecCCCCccccceEEEEeecCcceeeeeecccccCCC-CCcccCCCCCCccccceeeeccccccccCceeeccCCCC
Q psy13480 173 TVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQP-RPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFG 251 (615)
Q Consensus 173 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~-rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G 251 (615)
.||+..+ .+..+|.++++||.||||+||+|+||++|||++|||++|
T Consensus 104 ---------------------------------~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaG 150 (436)
T PRK02118 104 ---------------------------------PIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSG 150 (436)
T ss_pred ---------------------------------eeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCC
Confidence 0122211 123567788999999999999999999999999999999
Q ss_pred CCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhH
Q psy13480 252 CGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITL 331 (615)
Q Consensus 252 ~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~ti 331 (615)
+|||+|+++|++++++|++||++||||++|+.||+++|.+ .+.|+|||+|+||||+||.+|++++|+|+|+
T Consensus 151 vgk~~L~~~ia~~~~~~v~Vfa~iGeR~rE~~ef~~~~~~---------~~~l~rtvlv~~~adep~~~R~~~~~~Alti 221 (436)
T PRK02118 151 EPYNALLARIALQAEADIIILGGMGLTFDDYLFFKDTFEN---------AGALDRTVMFIHTASDPPVECLLVPDMALAV 221 (436)
T ss_pred CCHHHHHHHHHHhhCCCeEEEEEeccchhHHHHHHHHHhh---------CCCcceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999853 6889999999999999999999999999999
Q ss_pred HHHHHhCC-CcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecC
Q psy13480 332 SEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSP 410 (615)
Q Consensus 332 AEyfrd~G-~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~ 410 (615)
||||||+| +||||++||+||||+|+||||+++||||+++||||||||+||++|||||++ .++||||+|++|++
T Consensus 222 AEyfrd~g~~~VLli~DdlTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~------~~~GSITai~~V~~ 295 (436)
T PRK02118 222 AEKFALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDF------EDGGSITIIAVTTM 295 (436)
T ss_pred HHHHHhcCCCCEEEeccCchHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCC------CCCeeEEEEEEEEc
Confidence 99999998 999999999999999999999999999999999999999999999999996 34899999999999
Q ss_pred CCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHH
Q psy13480 411 PGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEI 490 (615)
Q Consensus 411 ~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i 490 (615)
||||++|||+|++++|+||||+|||+| ||++.|+||+|+.+...+ -.++|++++++++++|++|+|+++|
T Consensus 296 p~DD~tdPi~d~~~silDGqIvLsR~l--------ID~l~S~SRl~~~v~g~~--t~~~h~~~a~~l~~~~a~y~e~~dl 365 (436)
T PRK02118 296 PGDDVTHPVPDNTGYITEGQFYLRRGR--------IDPFGSLSRLKQLVIGKK--TREDHGDLMNAMIRLYADSREAKEK 365 (436)
T ss_pred CCCCcCccHHHHHHHhcCcEEEecccc--------ccCccccccccccccCcc--ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 999999999998886521 1268999999999999999999999
Q ss_pred HHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHH
Q psy13480 491 VQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 491 ~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~ 544 (615)
+++ | .+|+++|+.++.+|+++++.|++| +++.|+++|+...+.|+.
T Consensus 366 i~i-G-~eLs~~d~~~l~~~~~~e~~~~~~------g~~~~~~etl~~~~~~l~ 411 (436)
T PRK02118 366 MAM-G-FKLSNWDEKLLKFSELFESRLMDL------EVNIPLEEALDLGWKILA 411 (436)
T ss_pred HHh-h-hhcCHHHHHHHHHHHHHHHHhhcC------CCcccHHHHHHHHHHHHH
Confidence 996 7 599999999999999998777776 478999999999999886
No 32
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=9.3e-101 Score=829.43 Aligned_cols=417 Identities=24% Similarity=0.407 Sum_probs=380.7
Q ss_pred ccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcC----ceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCC
Q psy13480 8 MADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGY----FELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGK 83 (615)
Q Consensus 8 ~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~----~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~ 83 (615)
+....+.+.+|+|.+|+|++|+++|+. +++||+|.++. ..+.|||++++++++.+|+|++|+||++|++|++||+
T Consensus 10 ~~~~~~~~~~G~v~~v~g~~v~~~g~~-~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~t~gl~~G~~V~~tg~ 88 (434)
T PRK08472 10 LQKFNLSPRFGSITKISPTIIEADGLN-PSVGDIVKIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISKE 88 (434)
T ss_pred HhcCCcceeeeEEEEEEccEEEEEecC-CCCCCEEEEecCCCCCceEEEEEEEeCCeEEEEEccCCCCCCCCCEEEeCCC
Confidence 344567889999999999999999985 99999999953 2489999999999999999999999999999999999
Q ss_pred cceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeee
Q psy13480 84 PLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHK 163 (615)
Q Consensus 84 ~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~ 163 (615)
+++|++|++|||||+|++|||||+.++....
T Consensus 89 ~~~v~vg~~llGRViD~~G~plD~~g~~~~~------------------------------------------------- 119 (434)
T PRK08472 89 GLNIPVGRNLLGRVVDPLGRPIDGKGAIDYE------------------------------------------------- 119 (434)
T ss_pred ceEEEcChhhcCCEECCCCCcccCCCCCCcc-------------------------------------------------
Confidence 9999999999999999999999987532110
Q ss_pred ecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCc
Q psy13480 164 MIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGG 242 (615)
Q Consensus 164 i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq 242 (615)
++||+..+. ++++|.+++++|.||+++||.++|+++||
T Consensus 120 -----------------------------------------~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq 158 (434)
T PRK08472 120 -----------------------------------------RYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQ 158 (434)
T ss_pred -----------------------------------------cccccccCCCCHHHcCCcceeccchhHHhhhcceecCCC
Confidence 023443333 36789999999999999999999999999
Q ss_pred eeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHH
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~ 322 (615)
+++|+|++|+|||+|+++|+++.++|++||++||||++|+++|+++. + .+.|+||++|+||||+||.+|+
T Consensus 159 ~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~--l--------~~~l~~tvvV~atsddsp~~R~ 228 (434)
T PRK08472 159 KLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKN--L--------GGDLENTVIVVATSDDSPLMRK 228 (434)
T ss_pred EEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHH--h--------cCcccceEEEEECCCCCHHHhh
Confidence 99999999999999999999999999999999999999999998742 1 1338999999999999999999
Q ss_pred HHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCce
Q psy13480 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSV 402 (615)
Q Consensus 323 ~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSI 402 (615)
.++|+|+|+||||||+|+|||||+||+||||+|+||||+++||||+++|||||+|+.||+||||||+. .++|||
T Consensus 229 ~~~~~a~~iAEyFrd~G~~Vll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~------~g~GSI 302 (434)
T PRK08472 229 YGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKE------EGKGSI 302 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccC------CCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999995 358999
Q ss_pred EEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHH
Q psy13480 403 SIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQ 482 (615)
Q Consensus 403 T~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 482 (615)
|+|++|++|||||+|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.. ++|++++.++|++|+
T Consensus 303 T~~~tVlv~gdD~~dpi~d~~~~i~Dg~ivLsr~la~~g~~PAIDvl~S~SR~~~~~~~------~~~~~~a~~~r~~l~ 376 (434)
T PRK08472 303 TAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDIIS------PEHKLAARKFKRLYS 376 (434)
T ss_pred eEeEEEEecCCCCCCCchHHhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhcCC------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887 899999999999999
Q ss_pred hHHHHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 483 EEEDLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 483 ~~~el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
+|+|++++++++. .+.+++.|+++. +++.+ ++||+|+. ++++++++++..|+.|+
T Consensus 377 ~y~e~e~li~~G~y~~g~d~~~d~ai~-~~~~i-~~fL~Q~~----~~~~~~~~~~~~l~~~~ 433 (434)
T PRK08472 377 LLKENEVLIRIGAYQKGNDKELDEAIS-KKEFM-EQFLKQNP----NELFPFEQTFEQLEEIL 433 (434)
T ss_pred hchhHHHHHHhhCccCCCCHHHHHHHH-hHHHH-HHHhCCCC----CCCCCHHHHHHHHHHHh
Confidence 9999999999854 589999999754 55555 59999996 77799999999998875
No 33
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.9e-100 Score=825.54 Aligned_cols=410 Identities=29% Similarity=0.450 Sum_probs=374.5
Q ss_pred eEEEEEECceEEEEeCCCC-cceeEEEEcC--c-eeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCccc
Q psy13480 18 GFVYAVSGPVVTAEKMSGS-AMYELVRVGY--F-ELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGI 93 (615)
Q Consensus 18 G~I~~I~Gpvv~a~g~~~~-~~~E~v~vg~--~-~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgL 93 (615)
|+|.+|.|++++++|+..+ ++||+|.+.. + .+.|||++++++.+.+++|++|.||++|++|++||++++|++|++|
T Consensus 1 G~v~~v~g~~~~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~vg~~l 80 (418)
T TIGR03498 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSW 80 (418)
T ss_pred CEEEEEECcEEEEEcCCCccCCCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCCCEEEECCCccEEEeChhh
Confidence 7999999999999998764 9999999953 3 5899999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCcc
Q psy13480 94 LGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGT 173 (615)
Q Consensus 94 LGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g~ 173 (615)
||||+|++|||||+.++....
T Consensus 81 LGRViD~lG~plD~~~~~~~~----------------------------------------------------------- 101 (418)
T TIGR03498 81 LGRVINALGEPIDGKGPLPQG----------------------------------------------------------- 101 (418)
T ss_pred cCCEECCCCCccCCCCCCCCC-----------------------------------------------------------
Confidence 999999999999976432100
Q ss_pred eeEecCCCCccccceEEEEeecCcceeeeeecccccCC-CCCcccCCCCCCccccceeeeccccccccCceeeccCCCCC
Q psy13480 174 VTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQ-PRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGC 252 (615)
Q Consensus 174 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~-~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~ 252 (615)
..+||++. ++++.+|.++++||.||+++||.+||+++||+++|+|++|+
T Consensus 102 ------------------------------~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~ 151 (418)
T TIGR03498 102 ------------------------------ERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGV 151 (418)
T ss_pred ------------------------------cceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCC
Confidence 01356664 34578899999999999999999999999999999999999
Q ss_pred CcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHH
Q psy13480 253 GKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLS 332 (615)
Q Consensus 253 GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiA 332 (615)
|||+|+++|+++.++|..+|+++|||++|+++|++++- ....|+|||+|+||||+|+.+|++++|+|+|+|
T Consensus 152 GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~~~~~~~l---------~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iA 222 (418)
T TIGR03498 152 GKSTLLSMLARNTDADVVVIALVGERGREVREFLEDDL---------GEEGLKRSVVVVATSDESPLMRRQAAYTATAIA 222 (418)
T ss_pred ChHHHHHHHhCCCCCCEEEEEEEeeechHHHHHHHHhh---------hccccceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998752 145699999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCC
Q psy13480 333 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPG 412 (615)
Q Consensus 333 Eyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~g 412 (615)
|||||+|+||||++||+||||+|+||||+++||||+++||||++|+.||+||||||+.. +++||||+|+||++||
T Consensus 223 Eyfrd~G~~Vll~~DslTr~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~ERag~~~-----~~~GSIT~~~tVl~~g 297 (418)
T TIGR03498 223 EYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGA-----EGKGSITGIFTVLVDG 297 (418)
T ss_pred HHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCchhhhhhhHHHHHhccCC-----CCCcceeeeEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999842 4689999999999999
Q ss_pred CCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHHHH
Q psy13480 413 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQ 492 (615)
Q Consensus 413 gD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i~~ 492 (615)
||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.. ++|++++.++|++|++|+|++++++
T Consensus 298 dd~~dpi~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~------~~~~~~a~~~r~~l~~y~e~~~~~~ 371 (418)
T TIGR03498 298 DDHNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWS------PEERKLVRRLRALLARYEETEDLIR 371 (418)
T ss_pred CCCCCcchhhhheeeeeEEEECHHHHhCCCCCccCCcccccccchhhcC------HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877 8999999999999999999999999
Q ss_pred Hhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHH
Q psy13480 493 LVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNM 542 (615)
Q Consensus 493 ~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I 542 (615)
+++ ++.+++.|+++- +++.+. +||+|+. ++.+++++++..|..|
T Consensus 372 ~g~y~~g~d~~~d~ai~-~~~~i~-~fl~Q~~----~~~~~~~~~~~~l~~~ 417 (418)
T TIGR03498 372 LGAYRKGSDPELDEAIR-LVPKIY-EFLTQGP----DEPTSLQDPFADLAAI 417 (418)
T ss_pred hhCCcCCCCHHHHHHHH-hHHHHH-HHhCCCC----CCCCCHHHHHHHHHhh
Confidence 976 367777777744 555564 9999996 6779999999999876
No 34
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=5.2e-100 Score=822.10 Aligned_cols=406 Identities=28% Similarity=0.458 Sum_probs=372.4
Q ss_pred eEEEEEECceEEEEeCCCCcceeEEEEc---CceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCcccc
Q psy13480 18 GFVYAVSGPVVTAEKMSGSAMYELVRVG---YFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGIL 94 (615)
Q Consensus 18 G~I~~I~Gpvv~a~g~~~~~~~E~v~vg---~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgLL 94 (615)
|+|++|.|++|+|+|. ++.+||+|.+. ++.+.|||++++++.+.+|+|++|.||++|++|.+||++++|++|++||
T Consensus 1 G~V~~i~G~~i~v~~~-~~~ige~~~i~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~~lL 79 (413)
T TIGR03497 1 GKVTRVIGLTIESKGP-KAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLL 79 (413)
T ss_pred CeEEEEECCEEEEEeC-CCCcCCEEEEEeCCCCeEEEEEEEEcCCeEEEEEccCccCCCCCCEEEEcCCeeEEEcchhhc
Confidence 8999999999999997 79999999993 4568999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCcce
Q psy13480 95 GSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTV 174 (615)
Q Consensus 95 GrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g~v 174 (615)
|||||++|||||+.++...
T Consensus 80 GRVid~~G~plD~~~~~~~------------------------------------------------------------- 98 (413)
T TIGR03497 80 GRVLDGLGRPLDGEGPIIG------------------------------------------------------------- 98 (413)
T ss_pred CCEEcCCCCcccCCCCCCC-------------------------------------------------------------
Confidence 9999999999997643210
Q ss_pred eEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccCCCCCC
Q psy13480 175 TYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCG 253 (615)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~G 253 (615)
.++||++.+.| +.+|.++++|+.||+|+||.++|+++||+++|+|++|+|
T Consensus 99 -----------------------------~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~G 149 (413)
T TIGR03497 99 -----------------------------EEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVG 149 (413)
T ss_pred -----------------------------CccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCC
Confidence 02356665444 678999999999999999999999999999999999999
Q ss_pred cchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHH
Q psy13480 254 KTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSE 333 (615)
Q Consensus 254 Kt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAE 333 (615)
||+|+++|+++.++|+.|+++||||++|+++|+++.- ....|+||++|+||||+|+.+|++++|+|+|+||
T Consensus 150 KTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l---------~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAE 220 (413)
T TIGR03497 150 KSTLLGMIARNAKADINVIALIGERGREVRDFIEKDL---------GEEGLKRSVVVVATSDQPALMRLKAAFTATAIAE 220 (413)
T ss_pred HHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHh---------cccccceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998731 1345899999999999999999999999999999
Q ss_pred HHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCC
Q psy13480 334 YFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGG 413 (615)
Q Consensus 334 yfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~gg 413 (615)
||||+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+ .++||||+|++|++|||
T Consensus 221 yfr~~G~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~-------~~~GSIT~~~tVl~~gd 293 (413)
T TIGR03497 221 YFRDQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN-------SQKGSITGFYTVLVDGD 293 (413)
T ss_pred HHHHCCCCEEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcC-------CCCcceeEEEEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999998 35899999999999999
Q ss_pred CCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHHHHH
Q psy13480 414 DFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQL 493 (615)
Q Consensus 414 D~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i~~~ 493 (615)
|++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.. ++|++++.++|++|++|+|+++++++
T Consensus 294 D~~dpi~~~~~si~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~~~------~~~~~~a~~~r~~l~~y~e~~~li~~ 367 (413)
T TIGR03497 294 DMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVMNEIVS------EEHKELAGKLRELLAVYKEAEDLINI 367 (413)
T ss_pred CCCCcchhhccccccEEEEECHHHHhCCCCCccCCccccccCccccCC------HHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998876 89999999999999999999999998
Q ss_pred hc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHH
Q psy13480 494 VG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNM 542 (615)
Q Consensus 494 ~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I 542 (615)
++ .+.+++.|+++. +++.+ ++||+|+. ++++++++++..|..+
T Consensus 368 g~~~~g~d~~~~~~i~-~~~~i-~~fl~Q~~----~~~~~~~~~~~~l~~~ 412 (413)
T TIGR03497 368 GAYKRGSNPKIDEAIR-YIEKI-NSFLKQGI----DEKFTFEETVQLLKTL 412 (413)
T ss_pred cCcccCCCHHHHHHHH-HHHHH-HHHhCCCC----CCCCCHHHHHHHHHhh
Confidence 65 456666777744 55555 59999996 6779999999999876
No 35
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=1.6e-99 Score=818.65 Aligned_cols=414 Identities=27% Similarity=0.430 Sum_probs=377.0
Q ss_pred cceeeEEEEEECceEEEEeCCCCcceeEEEEc----CceeE--EEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCccee
Q psy13480 14 EGRFGFVYAVSGPVVTAEKMSGSAMYELVRVG----YFELV--GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSV 87 (615)
Q Consensus 14 ~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg----~~~l~--GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv 87 (615)
.+.+|+|++|.|++|++++. ++++||+|++. ++.+. ||||+++++++.+|+|++|.||.+|++|.+||++++|
T Consensus 4 ~~~~g~v~~i~g~~i~~~~~-~~~~ge~~~i~~~~~~~~~~~~~evv~~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v 82 (428)
T PRK08149 4 LQRLAHPLRIQGPIIEAELP-DVAIGEICEIRAGWHSNEVIARAQVVGFQRERTILSLIGNAQGLSRQVVLKPTGKPLSV 82 (428)
T ss_pred eeeeeEEEEEEeeEEEEEEC-CCCcCCEEEEeecCCCCceeeEEEEEEeeCcEEEEEECCCccCCCCCCEEEEcCCcCEE
Confidence 56789999999999999974 89999999993 23456 8999999999999999999999999999999999999
Q ss_pred ecCcccccccccccccccCCCc-cccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecC
Q psy13480 88 ELGPGILGSIFDGIQRPLKDIN-ELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIM 166 (615)
Q Consensus 88 ~lGpgLLGrI~DgigrPLd~~~-~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~ 166 (615)
++|++|||||+|++|||||+.+ +... . |
T Consensus 83 ~vg~~llGrv~d~~G~piD~~~~~~~~--------------~---------------------------------~---- 111 (428)
T PRK08149 83 WVGEALLGAVLDPTGKIVERFDAPPTV--------------G---------------------------------P---- 111 (428)
T ss_pred EeChhhcCCeeCCCCCCcCCCCCCccc--------------c---------------------------------c----
Confidence 9999999999999999999774 1100 0 0
Q ss_pred CCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCceee
Q psy13480 167 PPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGGTTA 245 (615)
Q Consensus 167 pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~ 245 (615)
+ ..+||+..+. ++.+|.++++||.||+++||.++|+++||+++
T Consensus 112 -------------~-----------------------~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~ 155 (428)
T PRK08149 112 -------------I-----------------------SEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMG 155 (428)
T ss_pred -------------c-----------------------cceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEE
Confidence 0 0123444433 46788899999999999999999999999999
Q ss_pred ccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHH
Q psy13480 246 IPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASI 325 (615)
Q Consensus 246 I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~ 325 (615)
|+|++|+|||||+++|+++.++|++|+++||+|++|+++|.+++.+ ...|+|+++|+||||+|+.+|++++
T Consensus 156 I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~---------~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 156 IFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRA---------SSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred EECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhh---------cccccceEEEEECCCCCHHHHHhHH
Confidence 9999999999999999999999999999999999999999998743 4678999999999999999999999
Q ss_pred HHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEE
Q psy13480 326 YTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIV 405 (615)
Q Consensus 326 ~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i 405 (615)
|+|+|+||||||+|+|||||+||+||||+|+||||+++||||+++|||||+|+.||+||||||+. .+||||+|
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~-------~~GSIT~~ 299 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGAT-------LAGSITAF 299 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHHHHHHHHHhHhhcCCCCcccccCccHHHHHHHHHHhccCC-------CCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999995 36999999
Q ss_pred EeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHH
Q psy13480 406 GAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEE 485 (615)
Q Consensus 406 ~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 485 (615)
++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.. ++|++++.++|++|++|+
T Consensus 300 ~tVl~~~dD~~dpi~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~------~~~~~~a~~~r~~l~~y~ 373 (428)
T PRK08149 300 YTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTD------PKHRQLAAAFRKLLTRLE 373 (428)
T ss_pred EEEEecCCCCCCCchhhhheeccEEEEEcHHHHhCCCCCcccCccccccchhhhcC------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876 899999999999999999
Q ss_pred HHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 486 DLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 486 el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
|+++|+++++ .+++|+.|+++.. ++.+ ++||+|+. ++++++++++..|..++
T Consensus 374 e~e~li~~G~y~~g~~~~~d~ai~~-~~~i-~~fl~Q~~----~~~~~~~~~~~~l~~~~ 427 (428)
T PRK08149 374 ELQLFIDLGEYRRGENADNDRAMDK-RPAL-EAFLKQDV----AEKSSFSDTLERLNEFA 427 (428)
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHh-HHHH-HHHhCCCC----CCCCCHHHHHHHHHHHh
Confidence 9999999854 5889999999764 5555 59999996 66699999999998875
No 36
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=2.6e-99 Score=817.47 Aligned_cols=416 Identities=23% Similarity=0.338 Sum_probs=377.4
Q ss_pred ccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEc---CceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCc
Q psy13480 8 MADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVG---YFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKP 84 (615)
Q Consensus 8 ~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg---~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ 84 (615)
+.+..+.+.+|+|.+|.|++|+++|+ .+++||+|.+. ++.+.||||+++++++++|+|++|+||++|++|.+||++
T Consensus 11 ~~~~~~~~~~g~v~~v~g~~i~~~g~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~G~~V~~~~~~ 89 (434)
T PRK05922 11 IHQWQPYRECGLLSRVSGNLLEAQGL-SACLGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVALGAEVLPLRRP 89 (434)
T ss_pred cccCCcceeeeEEEEEEccEEEEEeC-CCCCCCEEEEecCCCCeeEEEEEEEeCCeEEEEEccCCCCCCCCCEEEeCCCC
Confidence 34456678899999999999999998 48899999995 235899999999999999999999999999999999999
Q ss_pred ceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeee
Q psy13480 85 LSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKM 164 (615)
Q Consensus 85 lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i 164 (615)
++|++|++|||||+|++|||||+.++.. .|++
T Consensus 90 ~~v~vg~~llGrv~d~~G~pld~~~~~~------------------~~~~------------------------------ 121 (434)
T PRK05922 90 PSLHLSDHLLGRVLDGFGNPLDGKEQLP------------------KTHL------------------------------ 121 (434)
T ss_pred cEEEcChhhcCCEeCCCCCccCCCCCCC------------------ccce------------------------------
Confidence 9999999999999999999999764321 1211
Q ss_pred cCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCce
Q psy13480 165 IMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGGT 243 (615)
Q Consensus 165 ~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq~ 243 (615)
||+..+. +..+|.++++||.||+|+||+|+|+++|||
T Consensus 122 ------------------------------------------~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~Gqr 159 (434)
T PRK05922 122 ------------------------------------------KPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQR 159 (434)
T ss_pred ------------------------------------------eecccCCCChhhcCCcceecCCCceeecceEEEcCCcE
Confidence 2333222 356788899999999999999999999999
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHH
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREA 323 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~ 323 (615)
++|+|++|+|||+|+++|+++.++|+++|++||||++|+.+|++++.+ ...++||++|+||||+|+.+|++
T Consensus 160 igI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGerg~ev~eyl~q~~~---------~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 160 IGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGREVREYIEQHKE---------GLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred EEEECCCCCChHHHHHHHhccCCCCceEEEEeCCCCchHHHHHHHHHh---------hccccceEEEEECCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999988743 34578999999999999999999
Q ss_pred HHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceE
Q psy13480 324 SIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVS 403 (615)
Q Consensus 324 s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT 403 (615)
++|+|+|+||||||+|+|||||+||+||||+|+||||+++||||+++|||||+|+.||+||||||+ .++||||
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag~-------~~~GSIT 303 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGN-------NDKGSIT 303 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhcC-------CCCccee
Confidence 999999999999999999999999999999999999999999999999999999999999999998 2479999
Q ss_pred EEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHh
Q psy13480 404 IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQE 483 (615)
Q Consensus 404 ~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 483 (615)
+|++|+++++ ++|||+|++++|+||||+|||+||+++ |||||++.|+||+|+.+.. ++|++++.++|++|++
T Consensus 304 ~~~tVl~~~~-~~dpi~d~~rsilDGhIvLsr~la~~~-~PAIDvl~S~SR~~~~~~~------~~~~~~a~~~r~~l~~ 375 (434)
T PRK05922 304 ALYAILHYPN-HPDIFTDYLKSLLDGHFFLTPQGKALA-SPPIDILTSLSRSARQLAL------PHHYAAAEELRSLLKA 375 (434)
T ss_pred EEEEEEecCC-CCCccccchhhhcCcEEEEcHHHHhCC-CCCcCCccccccCCccccC------HHHHHHHHHHHHHHHH
Confidence 9999999988 899999999999999999999999987 9999999999999999987 8999999999999999
Q ss_pred HHHHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHH
Q psy13480 484 EEDLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 484 ~~el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~ 544 (615)
|+|+++++++++ .+.+++.|+++-.+. . .++||+|+. ++++++++++..|..|++
T Consensus 376 y~e~edli~~G~y~~g~d~~~d~a~~~~~-~-i~~fl~Q~~----~~~~~~~~~~~~l~~~~~ 432 (434)
T PRK05922 376 YHEALDIIQLGAYVPGQDAHLDRAVKLLP-S-IKQFLSQPL----SSYCALHNTLKQLEALLK 432 (434)
T ss_pred HHHHHHHHHhcCCCccCCHHHHHHHHhHH-H-HHHHhCCCC----CCCCCHHHHHHHHHHHHh
Confidence 999999999954 577888888854333 3 469999995 788999999999999875
No 37
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=5.8e-99 Score=817.06 Aligned_cols=413 Identities=31% Similarity=0.504 Sum_probs=380.2
Q ss_pred cceeeEEEEEECceEEEEeCCCCcceeEEEEc---CceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecC
Q psy13480 14 EGRFGFVYAVSGPVVTAEKMSGSAMYELVRVG---YFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELG 90 (615)
Q Consensus 14 ~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg---~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lG 90 (615)
.+.+|+|.+|.|++|++.+ .++.+||+|.+. ++.+.|||+++++|++.+|+|++|+||++|++|++||++++|++|
T Consensus 3 ~~~~G~V~~v~g~~v~v~~-~~~~~ge~~~i~~~~~~~~~~eVi~~~~~~~~l~~~~~~~gl~~G~~V~~tg~~~~v~vg 81 (422)
T TIGR02546 3 VRVRGRVTEVSGTLLKAVL-PGARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHGISPGSEVIPTGRPLSIRVG 81 (422)
T ss_pred cceeEEEEEEECcEEEEEE-CCCCCCCEEEEeeCCCCeEEEEEEEEcCCcEEEEEccCccCCCCCCEEEECCCCceEEeC
Confidence 5678999999999999996 589999999995 336999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCC
Q psy13480 91 PGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKA 170 (615)
Q Consensus 91 pgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~ 170 (615)
++|||||||++|||||+.++.... .
T Consensus 82 ~~lLGrViD~~G~plD~~~~~~~~---------------~---------------------------------------- 106 (422)
T TIGR02546 82 EALLGRVLDGFGRPLDGKGELPAG---------------E---------------------------------------- 106 (422)
T ss_pred hhhccCEeCCCCCcccCCCCCCCC---------------C----------------------------------------
Confidence 999999999999999987532110 0
Q ss_pred CcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCC-CCcccCCCCCCccccceeeeccccccccCceeeccCC
Q psy13480 171 KGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQP-RPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGA 249 (615)
Q Consensus 171 ~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~-rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~ 249 (615)
.++||++.+ +++.+|.++++||.||+++||.++|+++||+++|+|+
T Consensus 107 ---------------------------------~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~ 153 (422)
T TIGR02546 107 ---------------------------------IETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAG 153 (422)
T ss_pred ---------------------------------ceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECC
Confidence 014677644 4488999999999999999999999999999999999
Q ss_pred CCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHh
Q psy13480 250 FGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGI 329 (615)
Q Consensus 250 ~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~ 329 (615)
+|+|||+|+++|+++.++|.++|++||||++|+.+|++++.. ...++||++|+||+|+|+.+|++++|+|+
T Consensus 154 sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~---------~~~~~~tvvv~~~s~~p~~~r~~~~~~a~ 224 (422)
T TIGR02546 154 AGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLG---------EEGRKRSVLVVSTSDRPSLERLKAAYTAT 224 (422)
T ss_pred CCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhc---------cccccceEEEeccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987632 46789999999999999999999999999
Q ss_pred hHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeec
Q psy13480 330 TLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVS 409 (615)
Q Consensus 330 tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs 409 (615)
|+||||||+|+|||+++||+||||+|+||||+++||||+++|||||+|+.||+||||||+ .++||||+|+||+
T Consensus 225 ~~AE~f~~~g~~Vl~~~Dsltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~~l~ERag~-------~~~GSIT~~~tv~ 297 (422)
T TIGR02546 225 AIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGN-------GEKGSITALYTVL 297 (422)
T ss_pred HHHHHHHHCCCcEEEEEeCchHHHHHHHHHHHhcCCCCcccccChhHHHHhHHHHHHhcC-------CCCCceeEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999998 3589999999999
Q ss_pred CCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHH
Q psy13480 410 PPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSE 489 (615)
Q Consensus 410 ~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~ 489 (615)
+||||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.. ++|++++.+++++|++|+|+++
T Consensus 298 ~~~dd~~~pi~~~~~~i~dg~i~Lsr~la~~g~yPAId~~~S~SR~~~~~~~------~~~~~~a~~~~~~l~~y~e~~~ 371 (422)
T TIGR02546 298 VEGDDMNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVMSQVVS------TEHRRAAGKLRRLLATYKEVEL 371 (422)
T ss_pred ccCCCCCCCchhhhhccccEEEEEcHHHHhCCCCCccCCccccccchhhhCC------HHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999999999998876 8999999999999999999999
Q ss_pred HHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 490 IVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 490 i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
++++++ .+.+++.|+++.. +..+ ++||+|+. +++|++++|+.+|..++
T Consensus 372 li~~g~y~~g~d~~~d~~i~~-~~~i-~~fl~Q~~----~~~~~~~~~~~~l~~~~ 421 (422)
T TIGR02546 372 LIRLGEYQPGSDPETDDAIDK-IDAI-RAFLRQST----DEYSPYEETLEQLHALV 421 (422)
T ss_pred HHHhcCCcCCCCHHHHHHHHh-HHHH-HHHhCCCC----CCCCCHHHHHHHHHHHh
Confidence 999854 4788888888665 4445 49999995 78899999999999875
No 38
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.4e-98 Score=812.44 Aligned_cols=417 Identities=25% Similarity=0.360 Sum_probs=382.0
Q ss_pred ccCCcceeeEEEEEECceEEEEeCCCCcceeEEEE-c-Cc----eeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEc--
Q psy13480 10 DEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRV-G-YF----ELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRT-- 81 (615)
Q Consensus 10 ~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~v-g-~~----~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~t-- 81 (615)
...+.+.+|+|++|.|.+|++.|+ .+++||+|.+ . ++ .+.+|||+++++.+.+|+|+++.||.+|++|.+|
T Consensus 21 ~~~~~~~~G~v~~v~g~~v~~~g~-~~~iG~~c~i~~~~~~~~~~~~~eVvg~~~~~~~l~~~~~~~gi~~g~~v~~~~~ 99 (455)
T PRK07960 21 QLPAVRRYGRLTRATGLVLEATGL-QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNI 99 (455)
T ss_pred cCCccccccEEEEEEEEEEEEeCC-CCCCCCEEEEEeCCCccccceeeeEEEecCCEEEEEECCCccCCCCCCEEEECCc
Confidence 346678889999999999999986 7999999998 2 23 4789999999999999999999999999999999
Q ss_pred -----CCcceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeec
Q psy13480 82 -----GKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHE 156 (615)
Q Consensus 82 -----g~~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e 156 (615)
|++++|++|++|||||+|++|+|||+.++....
T Consensus 100 ~~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~~~~------------------------------------------ 137 (455)
T PRK07960 100 SGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTG------------------------------------------ 137 (455)
T ss_pred ccccCCCceEEECCcccccCEECCCccccCCCCCCCCC------------------------------------------
Confidence 999999999999999999999999987543210
Q ss_pred cceeeeeecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccc
Q psy13480 157 NTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSL 235 (615)
Q Consensus 157 ~~~~~h~i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l 235 (615)
++||+..+.| ..+|.++++||.||+|+||.|
T Consensus 138 ------------------------------------------------~~~~i~~~~~~p~~R~~i~e~l~TGiraID~l 169 (455)
T PRK07960 138 ------------------------------------------------ETGALITPPFNPLQRTPIEHVLDTGVRAINAL 169 (455)
T ss_pred ------------------------------------------------ccccccCCCcChHHhcccccchhccceeeeec
Confidence 0234444333 678899999999999999999
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSN 315 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn 315 (615)
+|+++||+++|+|++|+|||+|+++|+++.++|++|+++||+|++|+.+|++++.. .+.++||++|+||||
T Consensus 170 l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~---------~~~~~~tvVv~~~ad 240 (455)
T PRK07960 170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILG---------AEGRARSVVIAAPAD 240 (455)
T ss_pred ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcC---------cCCCceEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999998732 466899999999999
Q ss_pred CCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCC
Q psy13480 316 MPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGN 395 (615)
Q Consensus 316 ~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~ 395 (615)
+|+.+|.+++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+..
T Consensus 241 ~~~~~r~~~~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~---- 316 (455)
T PRK07960 241 VSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGI---- 316 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecchhHHHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999953
Q ss_pred CCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHH
Q psy13480 396 PDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRT 475 (615)
Q Consensus 396 ~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~ 475 (615)
.++||||+|++|++|||||+|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.+ ++|.+.+.
T Consensus 317 -~~~GSIT~i~tVlv~~dD~~dpi~d~~~~i~dg~ivLsr~la~~g~yPAID~l~S~SR~~~~~~~------~~~~~~~~ 389 (455)
T PRK07960 317 -SGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALID------EQHYARVR 389 (455)
T ss_pred -CCCeeeeeEEEEEEcCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCcCcccCcCccccCC------HHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999877 88999999
Q ss_pred HHHHHHHhHHHHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 476 KVKEILQEEEDLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 476 ~~~~~L~~~~el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
++|++|+.|+++++++++++ .+++++.|+++..+.+ + +.||+|+. ++.+++++++..|..|+
T Consensus 390 ~~r~~l~~Y~~~~dli~ig~y~~G~d~~~D~ai~~~~~-i-~~fl~Q~~----~e~~~~~~~~~~l~~~~ 453 (455)
T PRK07960 390 QFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQ-L-EAFLQQGI----FERADWEDSLQALERIF 453 (455)
T ss_pred HHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHHhHHH-H-HHHhCCCC----CCCcCHHHHHHHHHHhh
Confidence 99999999999999999854 6888999999876644 4 69999996 77899999999999875
No 39
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=2.3e-98 Score=813.37 Aligned_cols=418 Identities=23% Similarity=0.309 Sum_probs=374.9
Q ss_pred cceeeEEEEEECceEEE---EeCCCCcceeEEEE---cCceeEEEEEEEeCC-eEEEEEecCCCCCCCCCeEEEcCCcce
Q psy13480 14 EGRFGFVYAVSGPVVTA---EKMSGSAMYELVRV---GYFELVGEIIRLEGD-MATIQVYEETSGVTVGDPVLRTGKPLS 86 (615)
Q Consensus 14 ~~~~G~I~~I~Gpvv~a---~g~~~~~~~E~v~v---g~~~l~GEVI~i~~d-~a~iqvye~t~Gl~~G~~V~~tg~~ls 86 (615)
..+.|+|.+|.|.++.+ .|++++.++|+|.+ .++...|.|+.+++| .+.+++|++++||+.|+.|.+||++++
T Consensus 37 ~~~~G~V~~v~~gia~v~~v~Gl~~~~~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~~G~~V~~tg~~~~ 116 (574)
T PTZ00185 37 TEMIGYVHSIDGTIATLIPAPGNPGVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLY 116 (574)
T ss_pred heeeEEEEEEcCeEEEEeecCCCcccccCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCCCCCEEEECCCccE
Confidence 34679999998889995 89999999999998 334568999999999 699999999999999999999999999
Q ss_pred eecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecC
Q psy13480 87 VELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIM 166 (615)
Q Consensus 87 v~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~ 166 (615)
||+|++|||||+|++|+|||+.+.... .| ++..+
T Consensus 117 VpVG~~lLGRVvD~lG~PIDg~~~~~~-----~g----~i~~~------------------------------------- 150 (574)
T PTZ00185 117 IPVGAGVLGKVVNPLGHEVPVGLLTRS-----RA----LLESE------------------------------------- 150 (574)
T ss_pred EECCcccccCEECCCCcccCCCCcccc-----CC----CCCcc-------------------------------------
Confidence 999999999999999999997643210 00 00000
Q ss_pred CCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceee
Q psy13480 167 PPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTA 245 (615)
Q Consensus 167 pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~ 245 (615)
...||+..+.| +.+|.++++||.||+|+||+|+|||||||.+
T Consensus 151 -------------------------------------~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR~l 193 (574)
T PTZ00185 151 -------------------------------------QTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQREL 193 (574)
T ss_pred -------------------------------------cccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCEEE
Confidence 01346655544 7899999999999999999999999999999
Q ss_pred ccCCCCCCcchh-hHHhhhcC---------CCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCC
Q psy13480 246 IPGAFGCGKTVI-SQALSKYS---------NSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSN 315 (615)
Q Consensus 246 I~g~~G~GKt~l-~~~la~~~---------~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn 315 (615)
|||++|+|||+| +.+|++++ ++++|||++||||++|+.++.++|.+ .++|+||++|+||||
T Consensus 194 IfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e---------~GaL~~TvVV~AtAd 264 (574)
T PTZ00185 194 IVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRS---------YGALRYTTVMAATAA 264 (574)
T ss_pred eecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHh---------cCCccceEEEEECCC
Confidence 999999999999 58899886 56899999999999999999998854 577999999999999
Q ss_pred CCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCC
Q psy13480 316 MPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGN 395 (615)
Q Consensus 316 ~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~ 395 (615)
+|+.+|++++|+|+|+||||||+|+|||+++||+||||+|+||||++++|||+++|||+++|+.+++|+||||+++.
T Consensus 265 ep~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REISLllgrpPgRegYPgdVF~lhsrLlERAg~l~~--- 341 (574)
T PTZ00185 265 EPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSP--- 341 (574)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccccC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred CCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHH
Q psy13480 396 PDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRT 475 (615)
Q Consensus 396 ~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~ 475 (615)
..++||||+|++|++|+||+++||++|++||+||||+|||+||++||||||||+.|+||+++.++. +.|++++.
T Consensus 342 ~~G~GSITAlpiV~t~adDis~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~SvSRvg~~aq~------~~~k~vAg 415 (574)
T PTZ00185 342 GKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQN------VAMKAVAG 415 (574)
T ss_pred CCCCcceEEEEEEEccCCCCCCcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcccccccCCccCC------HHHHHHHH
Confidence 134799999999999999999999999999999999999999999999999999999999999987 78999999
Q ss_pred HHHHHHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHH
Q psy13480 476 KVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 476 ~~~~~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~ 544 (615)
++|..|++|+||+.+.++. ++.|...|.++++++ +.|+|+. +.|.++|+..|.+..+
T Consensus 416 ~lr~~LaqY~El~~fa~fg-----sdld~~~l~rG~r~~-ellkQ~~------p~~~~~qv~~l~a~~~ 472 (574)
T PTZ00185 416 KLKGILAEYRKLAADSVGG-----SQVQTVPMIRGARFV-ALFNQKN------PSFFMNALVSLYACLN 472 (574)
T ss_pred HHHHHHHHHHHHHHHHhhc-----chhhHHHHHhhHHHH-HHHCCCC------CCCHHHHHHHHHHHhc
Confidence 9999999999999999985 334448889999987 8999984 6789999999988743
No 40
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=9.9e-98 Score=809.91 Aligned_cols=421 Identities=29% Similarity=0.419 Sum_probs=380.9
Q ss_pred cccccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEc----CceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEE
Q psy13480 5 LGKMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVG----YFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLR 80 (615)
Q Consensus 5 ~~~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg----~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~ 80 (615)
++++......+.+|+|.+|.|++|++.+. .+.+||+|.|+ ++.+.|||++++++.+.+|+|++|+||++|++|++
T Consensus 12 ~~~~~~~~~~~~~G~v~~i~G~~v~~~~~-~~~~ge~~~i~~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G~~V~~ 90 (440)
T TIGR01026 12 LCQEMDLRLVKRVGRVTKVKGLLIEAVGP-QASVGDLCLIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLA 90 (440)
T ss_pred HHhhhcCCccceeeEEEEEEeeEEEEEcC-CCCcCCEEEEeecCCCCcEEEEEEEecCCEEEEEEccCCcCCCCCCEEEe
Confidence 44445567788999999999999999985 79999999995 23489999999999999999999999999999999
Q ss_pred cCCcceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeecccee
Q psy13480 81 TGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLV 160 (615)
Q Consensus 81 tg~~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~ 160 (615)
||++++|++|++|||||||++|||||+.+...+. .
T Consensus 91 tg~~~~v~vg~~llGRVid~~G~plD~~~~~~~~--------------~------------------------------- 125 (440)
T TIGR01026 91 TGEGLSIKVGDGLLGRVLDGLGKPIDGKGKFLDN--------------V------------------------------- 125 (440)
T ss_pred CCCccEEEcChhhhhceecCCCcccCCCCCCCCC--------------c-------------------------------
Confidence 9999999999999999999999999976421000 0
Q ss_pred eeeecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccc
Q psy13480 161 KHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCV 239 (615)
Q Consensus 161 ~h~i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~ 239 (615)
+.||+..++ ++.+|.++++||.||+++||.++||+
T Consensus 126 --------------------------------------------~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~ 161 (440)
T TIGR01026 126 --------------------------------------------ETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVG 161 (440)
T ss_pred --------------------------------------------cccccccCCCChHHccCccccccceeeeeeeccccC
Confidence 012333322 35678889999999999999999999
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHH
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVA 319 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~ 319 (615)
+||+++|+|++|+|||+|+++|+++.++|+.++++||+|++|+.+|+++.- ..+.|+||++|+||||+||.
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~---------~~~~l~~tvvv~~~~d~~p~ 232 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDL---------GEEGLKRSVVVVATSDQSPL 232 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHh---------cccccceEEEEEECCCCCHH
Confidence 999999999999999999999999999999999999999999999998752 14669999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCC
Q psy13480 320 AREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDRE 399 (615)
Q Consensus 320 ~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~ 399 (615)
+|++++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++||||||. .++
T Consensus 233 ~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~-------~~~ 305 (440)
T TIGR01026 233 LRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGA-------SGK 305 (440)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhcc-------CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995 357
Q ss_pred CceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHH
Q psy13480 400 GSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKE 479 (615)
Q Consensus 400 GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (615)
||||+|+||+++|+|++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.. ++|++++.++|+
T Consensus 306 GSIT~i~tVl~~~~d~~dpi~d~~~~i~dG~ivLsr~la~~~~~PAId~~~S~SR~~~~~~~------~~~~~~a~~~r~ 379 (440)
T TIGR01026 306 GSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMTAIVS------EEHRRAARKFRE 379 (440)
T ss_pred CeeeEEEEEEccCcCCCcchhhhhccccceEEEEecchhhCCccCccCCCcccccCccccCC------HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876 899999999999
Q ss_pred HHHhHHHHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 480 ILQEEEDLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 480 ~L~~~~el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
+|++|+|+++|+++++ .+.+|+.|+++... +.+ +.||+|++| +++++++++..|+.|+
T Consensus 380 ~l~~y~e~~~li~ig~y~~g~d~~~d~~i~~~-~~i-~~fL~Q~~~----~~~~~~~~~~~l~~~~ 439 (440)
T TIGR01026 380 LLSKYKDNEDLIRIGAYQRGSDRELDFAIAKY-PKL-ERFLKQGIN----EKVNFEESLQQLEEIF 439 (440)
T ss_pred HHHhhHHHHHHHHhhccccCCCHHHHHHHHHH-HHH-HHHcCCCCC----CCCCHHHHHHHHHHhh
Confidence 9999999999999954 46789999996644 555 699999975 4589999999999875
No 41
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.2e-97 Score=798.71 Aligned_cols=422 Identities=22% Similarity=0.340 Sum_probs=380.6
Q ss_pred ccccccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEE-c-Cc-eeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEE
Q psy13480 4 ALGKMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRV-G-YF-ELVGEIIRLEGDMATIQVYEETSGVTVGDPVLR 80 (615)
Q Consensus 4 ~~~~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~v-g-~~-~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~ 80 (615)
+++.+......+.+|+|.+|.|++|++.|+ .+++||+|++ . ++ .+.||||+++++++++|+|++|+||++|++|.+
T Consensus 5 ~~~~~~~~~~~~~~G~v~~v~g~~~~~~~~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~v~~ 83 (434)
T PRK07196 5 ALKSIENIHLARVAGRLVRVTGLLLESVGC-RLAIGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGVLGGARVFP 83 (434)
T ss_pred HHhhhccCCccceeeEEEEEEcCEEEEecC-CCCcCCEEEEEeCCCceEEEEEEEecCCEEEEEECCCccCCCCCCEEEE
Confidence 456677777888999999999999999997 6999999999 2 23 589999999999999999999999999999999
Q ss_pred cCCcceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeecccee
Q psy13480 81 TGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLV 160 (615)
Q Consensus 81 tg~~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~ 160 (615)
||++++|++|++|||||+|++|||||+.+..... ..
T Consensus 84 ~~~~~~v~vg~~llGrv~d~~G~pld~~~~~~~~---------------~~----------------------------- 119 (434)
T PRK07196 84 SEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGS---------------TP----------------------------- 119 (434)
T ss_pred CCCccEEEcCccccCCeeCcCCCCcCCCCCCCCC---------------ce-----------------------------
Confidence 9999999999999999999999999987543210 00
Q ss_pred eeeecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccc
Q psy13480 161 KHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCV 239 (615)
Q Consensus 161 ~h~i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~ 239 (615)
||+..+. +..+|.++++||.||+++||.++|++
T Consensus 120 ----------------------------------------------~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~ 153 (434)
T PRK07196 120 ----------------------------------------------LQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIG 153 (434)
T ss_pred ----------------------------------------------eeccCCCCChHHhcccccccccceeeccceEeEe
Confidence 1111111 13567888999999999999999999
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHH
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVA 319 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~ 319 (615)
+||+++|+|++|+|||||+++|+++.++|++|+++||+|++|+.+|.++.-. ...+.|++++++++|.|+.
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~---------~~gl~rsvvv~~~~d~s~~ 224 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQ---------AAGMAKSVVVAAPADESPL 224 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhh---------hcccceEEEEEecCCCChh
Confidence 9999999999999999999999999999999999999999999999976421 3458999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCC
Q psy13480 320 AREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDRE 399 (615)
Q Consensus 320 ~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~ 399 (615)
+|..++++++++|||||++|+|||||+||+||||+|+||||+++||||+++|||||+|+.||+||||||+. +++
T Consensus 225 ~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~------~~~ 298 (434)
T PRK07196 225 MRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNS------SGN 298 (434)
T ss_pred hhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcC------CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 357
Q ss_pred CceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHH
Q psy13480 400 GSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKE 479 (615)
Q Consensus 400 GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (615)
||||+|++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.. ++|++++.++|+
T Consensus 299 GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~~~~------~~~~~~a~~~r~ 372 (434)
T PRK07196 299 GTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIG------SQQAKAASLLKQ 372 (434)
T ss_pred EEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhccC------HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887 899999999999
Q ss_pred HHHhHHHHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 480 ILQEEEDLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 480 ~L~~~~el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
+|++|+|+++|+++++ .+.+++.|+++- +.+.+ ++||+|+. ++.+++++++..|..++
T Consensus 373 ~~a~y~e~~~li~~g~y~~g~d~~~d~ai~-~~~~i-~~fL~Q~~----~e~~~~~~~~~~l~~~~ 432 (434)
T PRK07196 373 CYADYMAIKPLIPLGGYVAGADPMADQAVH-YYPAI-TQFLRQEV----GHPALFSASVEQLTGMF 432 (434)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHH-hHHHH-HHHhCCCC----CCCCCHHHHHHHHHHHh
Confidence 9999999999999864 477888888755 44445 59999996 67799999999998875
No 42
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.4e-95 Score=786.05 Aligned_cols=422 Identities=25% Similarity=0.349 Sum_probs=380.1
Q ss_pred ccc-ccCCcceeeEEEEEECceEEEEeCC-CCcceeEEEEc--CceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcC
Q psy13480 7 KMA-DEDREGRFGFVYAVSGPVVTAEKMS-GSAMYELVRVG--YFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTG 82 (615)
Q Consensus 7 ~~~-~~~~~~~~G~I~~I~Gpvv~a~g~~-~~~~~E~v~vg--~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg 82 (615)
.+. ...+.+.+|+|.+|.|.++++.|+. ++++||+|.+. ++...|||++++++.+.+++|+++.||++|++|.. +
T Consensus 16 ~~~~~~~~~~~~G~v~~v~g~~~~~~g~~~~~~iGe~~~i~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~v~~-~ 94 (450)
T PRK06002 16 RYAAPEPLVRIGGTVSEVTASHYRVRGLSRFVRLGDFVAIRADGGTHLGEVVRVDPDGVTVKPFEPRIEIGLGDAVFR-K 94 (450)
T ss_pred hcccccCccceeEEEEEEeceEEEEEcCccCCCCCCEEEEECCCCcEEEEEEEEeCCeEEEEEccCCcCCCCCCEEEe-C
Confidence 344 4466788999999999999999985 79999999994 23488999999999999999999999999999999 6
Q ss_pred CcceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeee
Q psy13480 83 KPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKH 162 (615)
Q Consensus 83 ~~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h 162 (615)
+++++++|++|||||+|++|+|||+.++.... .|
T Consensus 95 ~~~~v~vg~~llGRV~d~~G~piDg~~~~~~~----------------~~------------------------------ 128 (450)
T PRK06002 95 GPLRIRPDPSWKGRVINALGEPIDGLGPLAPG----------------TR------------------------------ 128 (450)
T ss_pred CCceeecCcccccCEECCCCcCCCCCCCCCCC----------------cc------------------------------
Confidence 78999999999999999999999986533210 00
Q ss_pred eecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccC
Q psy13480 163 KMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLG 241 (615)
Q Consensus 163 ~i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kG 241 (615)
+||+..+. ++.+|..+++++.||+++||.++||++|
T Consensus 129 -------------------------------------------~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~~I~~G 165 (450)
T PRK06002 129 -------------------------------------------PMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAG 165 (450)
T ss_pred -------------------------------------------eeeccCCCCCCeEeecceEEcCCCcEEeeeeceecCC
Confidence 12444333 3677888999999999999999999999
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHH
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R 321 (615)
|+++|+|++|+|||||+++|++...+|.++|++||||++|+.++.++.. ...++|++.|+++||+|+.+|
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l----------~~~r~rtI~vV~qsd~~~~~r 235 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL----------ADNLKKAVAVVATSDESPMMR 235 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH----------HHhhCCeEEEEEcCCCCHHHH
Confidence 9999999999999999999999999999999999999999999987642 234789999999999999999
Q ss_pred HHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCc
Q psy13480 322 EASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401 (615)
Q Consensus 322 ~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GS 401 (615)
++++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+.. +++||
T Consensus 236 ~~~~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~-----~~~GS 310 (450)
T PRK06002 236 RLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGA-----EGGGS 310 (450)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCC-----CCCee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999842 46899
Q ss_pred eEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHH
Q psy13480 402 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEIL 481 (615)
Q Consensus 402 IT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L 481 (615)
||+|++|++||||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+.. ++|++++.++|++|
T Consensus 311 IT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~------~~~~~~a~~~r~~l 384 (450)
T PRK06002 311 ITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAWT------PEQRKLVSRLKSMI 384 (450)
T ss_pred eeEEEEEEecCCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccCcccccccC------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 89999999999999
Q ss_pred HhHHHHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHH
Q psy13480 482 QEEEDLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFY 546 (615)
Q Consensus 482 ~~~~el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fy 546 (615)
++|+|+++|+++++ .+++|+.|+++-. .+.+ ++||+|+. ++.++ ++++..|..|+..-
T Consensus 385 a~y~e~e~li~ig~y~~G~d~~~D~ai~~-~~~i-~~fL~Q~~----~~~~~-~~~~~~l~~~~~~~ 444 (450)
T PRK06002 385 ARFEETRDLRLIGGYRAGSDPDLDQAVDL-VPRI-YEALRQSP----GDPPS-DDAFADLAAALKGA 444 (450)
T ss_pred HHHHHHHHHHHhhccccCCChHHHHHHHh-HHHH-HHHhCCCC----CCCCC-HHHHHHHHHHHhhH
Confidence 99999999999865 6888889999764 4445 59999995 67788 99999999988654
No 43
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.9e-93 Score=770.76 Aligned_cols=418 Identities=27% Similarity=0.418 Sum_probs=377.6
Q ss_pred ccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEc---Cc--eeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcC
Q psy13480 8 MADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVG---YF--ELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTG 82 (615)
Q Consensus 8 ~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg---~~--~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg 82 (615)
+......+.+|+|++|.|++|++++. ++++||+|.+. ++ .+.||||+++++++.+|+|++|+||++|++|.+||
T Consensus 10 ~~~~~~~~~~G~v~~i~G~~i~~~~~-~~~ige~~~i~~~~~~~~~~~~EVi~~~~~~~~l~~~~~~~gl~~g~~V~~tg 88 (438)
T PRK07721 10 IETLDPYKRYGKVSRVIGLMIESKGP-ESSIGDVCYIHTKGGGDKAIKAEVVGFKDEHVLLMPYTEVAEIAPGCLVEATG 88 (438)
T ss_pred HhcCCccceecEEEEEECcEEEEEEC-CCCchheEEEEecCCCCceEEEEEEEEcCCEEEEEEccCccCCCCCCEEEECC
Confidence 34456778899999999999999985 69999999993 22 48999999999999999999999999999999999
Q ss_pred CcceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeee
Q psy13480 83 KPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKH 162 (615)
Q Consensus 83 ~~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h 162 (615)
++++|++|++|||||||++|||||+.+...+ .
T Consensus 89 ~~~~v~vg~~llGRv~d~~G~plD~~~~~~~-------~----------------------------------------- 120 (438)
T PRK07721 89 KPLEVKVGSGLIGQVLDALGEPLDGSALPKG-------L----------------------------------------- 120 (438)
T ss_pred CccEEEechhhcCCEECcCCCccCCCCCCCc-------c-----------------------------------------
Confidence 9999999999999999999999997531110 0
Q ss_pred eecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccC
Q psy13480 163 KMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLG 241 (615)
Q Consensus 163 ~i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kG 241 (615)
.+||+..+. +..+|.++++||.||+++||.++|+++|
T Consensus 121 ------------------------------------------~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~G 158 (438)
T PRK07721 121 ------------------------------------------APVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKG 158 (438)
T ss_pred ------------------------------------------ccCCccCCCCChhhccCcccccccchhhhheeeeecCC
Confidence 012232222 2567788899999999999999999999
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHH
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R 321 (615)
|+++|+|++|+|||+|+++|+++.++|..++.+||||++|+.+|+++.- ....++|+|+|+||||+|+.+|
T Consensus 159 q~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l---------~~~~l~r~v~vv~~~~~~~~~r 229 (438)
T PRK07721 159 QRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDL---------GPEGLKRSIVVVATSDQPALMR 229 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhc---------ChhhhcCeEEEEECCCCCHHHH
Confidence 9999999999999999999999999999999999999999999998731 1345899999999999999999
Q ss_pred HHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCc
Q psy13480 322 EASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401 (615)
Q Consensus 322 ~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GS 401 (615)
++++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++++.|++++||+|+ .+.||
T Consensus 230 ~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~-------~~~Gs 302 (438)
T PRK07721 230 IKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGT-------NASGS 302 (438)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcC-------CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 24799
Q ss_pred eEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHH
Q psy13480 402 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEIL 481 (615)
Q Consensus 402 IT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L 481 (615)
||+|+||+++++||++||+|++++++||||+||++||++||||||||+.|+||+++.+.. ++|++++.++|++|
T Consensus 303 IT~~~TVlv~~hdm~e~i~d~v~~i~dG~Ivls~~la~~g~~PAIdv~~S~SR~~~~~~~------~~~~~~a~~~r~~l 376 (438)
T PRK07721 303 ITAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHIVS------PEHKEAANRFRELL 376 (438)
T ss_pred eeeEEEEEEECCCCCchhhhhEEEecCEEEEEeccHHHCCCCCccCCcccccccccccCC------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999877 89999999999999
Q ss_pred HhHHHHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHH
Q psy13480 482 QEEEDLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 482 ~~~~el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~ 544 (615)
++|+|+++++++++ .+++|+.|+++. +++.+ ++||+|+. ++..++++|+..|..|+.
T Consensus 377 ~~y~e~~~li~~g~y~~g~~~~~d~a~~-~~~~~-~~fl~Q~~----~~~~~~~~~~~~l~~~~~ 435 (438)
T PRK07721 377 STYQNSEDLINIGAYKRGSSREIDEAIQ-FYPQI-ISFLKQGT----DEKATFEESIQALLSLFG 435 (438)
T ss_pred HHhHHHHHHHHhhCCcCCCCHHHHHHHH-hHHHH-HHHhCCCC----CCCCCHHHHHHHHHHHHh
Confidence 99999999999976 588889999954 56666 59999996 666899999999988763
No 44
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=4.5e-92 Score=763.25 Aligned_cols=419 Identities=26% Similarity=0.379 Sum_probs=375.3
Q ss_pred cccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcC-c--eeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcc
Q psy13480 9 ADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGY-F--ELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPL 85 (615)
Q Consensus 9 ~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~-~--~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~l 85 (615)
......+.+|+|.+|.|++|++++. .+++||+|.|.. + .+.|||+++++|.+.+|+|++|.||++|++|++||+++
T Consensus 16 ~~~~~~~~~G~v~~i~g~~~~~~~~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~~g~~~ 94 (442)
T PRK06315 16 PDVQLTTVVGRITEVVGMLIKAVVP-DVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPSSEVIPTGLPL 94 (442)
T ss_pred hcCCcceeccEEEEEECCEEEEEEC-CcccCCEEEEecCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCCCEEEeCCCcc
Confidence 3456678899999999999999985 699999999943 3 48999999999999999999999999999999999999
Q ss_pred eeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeec
Q psy13480 86 SVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMI 165 (615)
Q Consensus 86 sv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~ 165 (615)
+|++|++|||||||++|||||+... +++.. .
T Consensus 95 ~v~vg~~llGrv~d~~G~pld~~~~---~~~~~---------~------------------------------------- 125 (442)
T PRK06315 95 HIRAGNGLLGRVLNGLGEPIDTETK---GPLEN---------V------------------------------------- 125 (442)
T ss_pred EEEecccccCCEEeccCcccccccC---CCccc---------c-------------------------------------
Confidence 9999999999999999999997310 00000 0
Q ss_pred CCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCcee
Q psy13480 166 MPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGGTT 244 (615)
Q Consensus 166 ~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~ 244 (615)
.+.||+..+. +..+|.++++||.||+|+||.++|+++||++
T Consensus 126 --------------------------------------~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i 167 (442)
T PRK06315 126 --------------------------------------DETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRI 167 (442)
T ss_pred --------------------------------------cceeeeecCCCChHHcccccccccceEEEEeccccccCCcEE
Confidence 0123443332 3578999999999999999999999999999
Q ss_pred eccCCCCCCcchhhHHhhhcC-CCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHH
Q psy13480 245 AIPGAFGCGKTVISQALSKYS-NSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREA 323 (615)
Q Consensus 245 ~I~g~~G~GKt~l~~~la~~~-~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~ 323 (615)
+|+|++|+|||+|+++|+++. .+|+.|+++|||||+|+.+|.++.-. ...++|+++|+|||++||.+|+.
T Consensus 168 ~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~---------~~g~~~svvvvats~q~p~~rln 238 (442)
T PRK06315 168 GIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLG---------EEGMKRSVIVVSTSDQSSQLRLN 238 (442)
T ss_pred EEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHH---------hcCCceEEEEEeCCCCCHHHHhh
Confidence 999999999999999999877 67888999999999999999876311 23489999999999999999999
Q ss_pred HHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceE
Q psy13480 324 SIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVS 403 (615)
Q Consensus 324 s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT 403 (615)
++|+|+++|||||++|++||+++||+||||+|+||||++++|||+++||||++||.||+||||||+. ++||||
T Consensus 239 p~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~l~~llERag~~-------~~GSIT 311 (442)
T PRK06315 239 AAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGAS-------DKGTIT 311 (442)
T ss_pred HHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhHhHHHHHHhcCC-------CCccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999983 489999
Q ss_pred EEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHh
Q psy13480 404 IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQE 483 (615)
Q Consensus 404 ~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 483 (615)
+||||+++|||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++ ++|++++.++|++|++
T Consensus 312 ai~tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~la~~g~~Paidv~~S~SR~~~~~~~------~~~~~~a~~~r~~l~~ 385 (442)
T PRK06315 312 AFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVP------EEQRRIIGKAREVLAK 385 (442)
T ss_pred eeEEEEecCCCCCcccHHHhhhhcceEEEEeccHHHcCCCCCccchhhhcccchhcCC------HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998877 8999999999999999
Q ss_pred HHHHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 484 EEDLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 484 ~~el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
|+|+++++++++ .+.+++.|+++- +.+.+. +||+|+. ++.+++++++..|..|+
T Consensus 386 y~e~e~li~~g~y~~g~d~~~d~ai~-~~~~i~-~fL~Q~~----~e~~~~~~~~~~l~~~~ 441 (442)
T PRK06315 386 YKANEMLIRIGEYRRGSDREVDFAID-HIDKLN-RFLKQDI----HEKTNYEEAAQQLRAIF 441 (442)
T ss_pred hhhhHHHHHhcCCcCCCCHHHHHHHH-HHHHHH-HHhCCCC----CCCCCHHHHHHHHHHHh
Confidence 999999999865 478888888865 444454 9999996 77799999999998875
No 45
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1e-90 Score=750.94 Aligned_cols=412 Identities=23% Similarity=0.323 Sum_probs=375.2
Q ss_pred CCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCc
Q psy13480 12 DREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGP 91 (615)
Q Consensus 12 ~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGp 91 (615)
.+.+.+|+|.+|.|.++++.|+ ++++||+|.+.++.+.|||++++++.+.+++|+++.||++|++|.+||++++|++|+
T Consensus 17 ~~~~~~g~v~~~~g~~~~~~g~-~~~ige~~~i~~~~~~~eV~~~~~~~~~~~~~~~~~gi~~g~~v~~~~~~~~v~vg~ 95 (432)
T PRK06793 17 PFYTKVGKVHSVQEQFFVAKGP-KAKIGDVCFVGEHNVLCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPRGN 95 (432)
T ss_pred CccceeeEEEEEEEEEEEEEcC-CCCcCCEEEECCCCEEEEEEEecCCcEEEEEccCccCCCCCCEEEECCCccEEEcCH
Confidence 5567889999999999999995 899999999943458999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCC
Q psy13480 92 GILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAK 171 (615)
Q Consensus 92 gLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~ 171 (615)
+|||||+|++|+|||+.+.....
T Consensus 96 ~~lGrV~d~~G~piD~~~~~~~~--------------------------------------------------------- 118 (432)
T PRK06793 96 HLLGKVLSANGEVLNEEAENIPL--------------------------------------------------------- 118 (432)
T ss_pred hhccCEECcCCccCCCCCCCCCc---------------------------------------------------------
Confidence 99999999999999976432100
Q ss_pred cceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccCCC
Q psy13480 172 GTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAF 250 (615)
Q Consensus 172 g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~ 250 (615)
++||+..+.| +.+|.++++|+.||+|+||.++|+++||+++|+|++
T Consensus 119 ---------------------------------~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~s 165 (432)
T PRK06793 119 ---------------------------------QKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGS 165 (432)
T ss_pred ---------------------------------ccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCC
Confidence 0123333332 567888899999999999999999999999999999
Q ss_pred CCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhh
Q psy13480 251 GCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGIT 330 (615)
Q Consensus 251 G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~t 330 (615)
|+|||+|+++|+.+.++|..++++||||++|+.+|++..-. ...|+||++|++|||+|+.+|.+++|+|++
T Consensus 166 G~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev~e~~~~~l~---------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~ 236 (432)
T PRK06793 166 GVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELG---------EEGMRKSVVVVATSDESHLMQLRAAKLATS 236 (432)
T ss_pred CCChHHHHHHHhccCCCCeEEEEeCCCCcccHHHHHHHHhh---------hcccceeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875321 234899999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecC
Q psy13480 331 LSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSP 410 (615)
Q Consensus 331 iAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~ 410 (615)
+||||||+|+||||++||+||||+|+||||++++|+|+. |||+|+++.|++|+||||+. ++||||++++|++
T Consensus 237 iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ERag~~-------~~GSiT~~~tvlv 308 (432)
T PRK06793 237 IAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGKT-------QKGSITGIYTVLV 308 (432)
T ss_pred HHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHHhccC-------CCcceEEEEEEEe
Confidence 999999999999999999999999999999999999996 99999999999999999984 4799999999999
Q ss_pred CCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHH
Q psy13480 411 PGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEI 490 (615)
Q Consensus 411 ~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i 490 (615)
||||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.++. ++|++++.++|++|++|+|++++
T Consensus 309 ~~dD~~dpI~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~------~~~~~~a~~~r~~la~y~e~e~~ 382 (432)
T PRK06793 309 DGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVS------PNHWQLANEMRKILSIYKENELY 382 (432)
T ss_pred cCCCCCCcchHHhhhhcceEEEEcHHHHhCCCCCccCCCcccCcCccccCC------HHHHHHHHHHHHHHHhChHHHHH
Confidence 999999999999999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred HHHhc--CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHH
Q psy13480 491 VQLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNM 542 (615)
Q Consensus 491 ~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I 542 (615)
+++++ .+++++.|+++..+...+ +.||+|+. ++.+++++++..|..+
T Consensus 383 i~~g~y~~g~~~~~d~ai~~~~~~i-~~fl~Q~~----~~~~~~~~~~~~l~~~ 431 (432)
T PRK06793 383 FKLGTIQENAENAYIFECKNKVEGI-NTFLKQGR----SDSFQFDDIVEAMHHI 431 (432)
T ss_pred HHhCCccCCCCHHHHHHHHHhHHHH-HHHhCCCC----CCCCCHHHHHHHHHhh
Confidence 99865 788889999877444545 49999996 7779999999999875
No 46
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.7e-86 Score=702.87 Aligned_cols=482 Identities=25% Similarity=0.352 Sum_probs=426.1
Q ss_pred ccccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcc
Q psy13480 6 GKMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPL 85 (615)
Q Consensus 6 ~~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~l 85 (615)
+.+.........|+|.+|...++.+.|+.++..+|++.+. ++..|-+..++.|.+.+.++++.+.|+.|+.|.+||+-+
T Consensus 17 ~~~~~~~~~~~~g~V~sv~DgIa~v~Gl~~~~~~E~~ef~-~~v~G~alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~ 95 (504)
T COG0056 17 ENFDVEAEVKEVGTVISVGDGIARVSGLENVMAGELVEFP-GGVKGMALNLEEDSVGAVILGDYSDIKEGDEVKRTGRIL 95 (504)
T ss_pred HhcchhhhhhccceEEEEecceEEEecCchhhcCceEEec-CCcEEEEEeccccceeEEEecCCccccCCcEEEeeCceE
Confidence 3344334456789999999999999999999999999997 778999999999999999999999999999999999999
Q ss_pred eeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeec
Q psy13480 86 SVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMI 165 (615)
Q Consensus 86 sv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~ 165 (615)
+||+|++|||||+|.+|+|+|+.+++....
T Consensus 96 ~Vpvg~~llGRVVn~lG~pidgkg~i~~~~-------------------------------------------------- 125 (504)
T COG0056 96 EVPVGEELLGRVVDALGNPIDGKGPIDATK-------------------------------------------------- 125 (504)
T ss_pred EEecchhhcceeecCCCCccCCCCCccccc--------------------------------------------------
Confidence 999999999999999999999987543210
Q ss_pred CCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCcee
Q psy13480 166 MPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTT 244 (615)
Q Consensus 166 ~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~ 244 (615)
..|+..+.| +++|.++++||.||+++||+|+|||||||.
T Consensus 126 ----------------------------------------~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRE 165 (504)
T COG0056 126 ----------------------------------------TRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRE 165 (504)
T ss_pred ----------------------------------------cCccccccCceecccccCchhhhhhHHHhhhcccCCCceE
Confidence 114555555 889999999999999999999999999999
Q ss_pred eccCCCCCCcchhhH-HhhhcCCCCE-EEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHH
Q psy13480 245 AIPGAFGCGKTVISQ-ALSKYSNSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322 (615)
Q Consensus 245 ~I~g~~G~GKt~l~~-~la~~~~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~ 322 (615)
+|.|+.+||||.++- .|.++.+.|+ ||||+||++.+.++++++.+.+ .++|++|++|++++++|+..++
T Consensus 166 LIIGDRQTGKTaIAidtIiNQk~~~v~CIYVAIGQK~stva~vv~tL~e---------~gAmdyTiVV~AsASd~a~lqY 236 (504)
T COG0056 166 LIIGDRQTGKTAIAIDTIINQKGSGVKCIYVAIGQKRSTVANVVRTLEE---------HGAMDYTIVVAASASDSAPLQY 236 (504)
T ss_pred EEeccCcCCcchhhHHHHHhcccCCcEEEEEEcccchHHHHHHHHHHHH---------cCCccceEEEEecCCcchhhhh
Confidence 999999999999987 6888888886 9999999999999999999865 5899999999999999999999
Q ss_pred HHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCce
Q psy13480 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSV 402 (615)
Q Consensus 323 ~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSI 402 (615)
++||+|||+|||||++|+|||+++||+|++|.|+||||+.|.+|||+|+||+++|.-+++|+|||+++. +..++|||
T Consensus 237 LaPy~g~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~---~e~g~GSi 313 (504)
T COG0056 237 LAPYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLS---DELGGGSI 313 (504)
T ss_pred hhhhhhhHHHHHHHhcCCeEEEEecCchHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhhc---cccCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999985 34578999
Q ss_pred EEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHH
Q psy13480 403 SIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQ 482 (615)
Q Consensus 403 T~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 482 (615)
|++|++.+.+||+|..||+|+.||+||||+|+.+|+++|+.||||+..|+||+.+.++. +...+++..+|..|+
T Consensus 314 TALPIIETqagDvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ~------kamkkvag~lrl~la 387 (504)
T COG0056 314 TALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQI------KAMKKVAGSLRLILA 387 (504)
T ss_pred EeeeeEEeccCceeeecccceEEecCCcEEeehhhhhcCCCccccCCceeeccchHHHH------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987 789999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHccccchhh
Q psy13480 483 EEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVESTAQSENK 562 (615)
Q Consensus 483 ~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fyd~a~~ai~~g~~~~~~ 562 (615)
+|+|++.+.++. ..|.+.++..|++++++. +.|+|+.|++ .|.++|+-.|.++...| .-...+++...++..
T Consensus 388 qYrel~afsqf~--sdLd~~T~~~l~~G~r~~-ellkQ~~~~p----~sv~~qv~ilya~~~G~-ld~v~v~~v~~fe~~ 459 (504)
T COG0056 388 QYRELEAFSQFG--SDLDKATRKQLERGKRLT-ELLKQPQYSP----LSVEEQVLILYAGTNGY-LDDVPVEKVADFEKE 459 (504)
T ss_pred HHHHHHHHHhhc--chhCHHHHHHHHccHHHH-HHhcCCCCCC----ccHHHHHHHHHHHhcCc-ccCCcHHHHHHHHHH
Confidence 999999999996 778899999999999986 9999998877 79999999999988755 111122333344333
Q ss_pred hhHHHHHhhhhHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy13480 563 ITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFR 611 (615)
Q Consensus 563 i~~~~i~~~~~~~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f~ 611 (615)
+. .++++.++++++.|...|.+ ++++++.|++.+++++..|.
T Consensus 460 l~-~~~~~~~~~~~~~I~~~~~l------~~~~e~~l~~~i~~f~~~f~ 501 (504)
T COG0056 460 LL-AYLRSDHKELLEEIRTTKEL------DDEIEAKLKAAIKEFKKTFA 501 (504)
T ss_pred HH-HHHHhhHHHHHHHHHhhcCC------CHHHHHHHHHHHHHHHHhcc
Confidence 33 66777888899999888765 22345667777777666553
No 47
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=1.3e-85 Score=673.73 Aligned_cols=235 Identities=28% Similarity=0.413 Sum_probs=224.0
Q ss_pred cccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccCCCCCCcchhhHHhhhcCC------CCEEEEEeecCcc
Q psy13480 207 WPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN------SDVIVYVGCGERG 279 (615)
Q Consensus 207 wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~------adviV~~~iGERg 279 (615)
||+..+.| +.+|.++++||.||+|+||+|+|||||||++|||++|+|||+|+.+|+++++ +|+|||++||||+
T Consensus 34 ~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~ 113 (276)
T cd01135 34 LDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITM 113 (276)
T ss_pred eeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEecccc
Confidence 45555543 7889999999999999999999999999999999999999999999999986 8999999999999
Q ss_pred hHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhC-CCcEEEEeeCchHHHHHHHH
Q psy13480 280 NEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDM-GYNVSMMADSTSRWAEALRE 358 (615)
Q Consensus 280 ~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~-G~~Vll~~Ds~tR~AeAlRE 358 (615)
+|+.||++++.+ .+.|+||++|++|||+|+.+|++++|+|+||||||||+ |+||||++||+||||+|+||
T Consensus 114 rev~e~~~~~~~---------~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rE 184 (276)
T cd01135 114 EDARFFKDDFEE---------TGALERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALRE 184 (276)
T ss_pred HHHHHHHHHhhh---------cCCcceEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHH
Confidence 999999999854 57899999999999999999999999999999999997 99999999999999999999
Q ss_pred HHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHH
Q psy13480 359 ISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLA 438 (615)
Q Consensus 359 Is~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La 438 (615)
||+++||||+++|||+++|+.||+||||||+++ .++||||+|++|++||||++|||++++++|+||||+|||+||
T Consensus 185 isl~~gepP~~~gyp~~vf~~~~~l~ERag~~~-----~~~GSITa~~~V~~~~dD~~dpi~~~~~si~DG~ivLsr~la 259 (276)
T cd01135 185 ISAAREEVPGRRGYPGYMYTDLATIYERAGRVE-----GRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIVLDRQLH 259 (276)
T ss_pred HHhccCCCCCccCcCccHHHHhhHHheecccCC-----CCCeeEEEEEEEEccCCCcCcchHHHHHhhcceEEEEcHHHH
Confidence 999999999999999999999999999999973 247999999999999999999999999999999999999999
Q ss_pred hCCCCCCCccCccccch
Q psy13480 439 QRKHFPSINWLISYSKY 455 (615)
Q Consensus 439 ~~g~yPAId~l~S~Sr~ 455 (615)
++||||||||+.|+||+
T Consensus 260 ~~g~~PAID~l~S~SR~ 276 (276)
T cd01135 260 NRGIYPPINVLPSLSRL 276 (276)
T ss_pred hCCCCCCcCCcccccCC
Confidence 99999999999999995
No 48
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=1.8e-85 Score=673.69 Aligned_cols=236 Identities=31% Similarity=0.512 Sum_probs=226.1
Q ss_pred ccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccCCCCCCcchhhHHhhhcCC---CCEEEEEeecCcchH
Q psy13480 206 VWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN---SDVIVYVGCGERGNE 281 (615)
Q Consensus 206 ~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~---adviV~~~iGERg~E 281 (615)
+||++.++| +.+|.++++||.||||+||+|+|||||||++|||++|+|||+|+++++++.. +|+|||++||||++|
T Consensus 33 ~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~E 112 (274)
T cd01133 33 TWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTRE 112 (274)
T ss_pred cccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHH
Confidence 578887775 8899999999999999999999999999999999999999999999887643 789999999999999
Q ss_pred HHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhC-CCcEEEEeeCchHHHHHHHHHH
Q psy13480 282 MAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDM-GYNVSMMADSTSRWAEALREIS 360 (615)
Q Consensus 282 v~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~-G~~Vll~~Ds~tR~AeAlREIs 360 (615)
++||+++|.+ .++|+||++|+||||+|+.+|++++|+|+|+||||||+ |+||||++||+||||+|+||||
T Consensus 113 v~e~~~~~~~---------~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis 183 (274)
T cd01133 113 GNDLYHEMKE---------SGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVS 183 (274)
T ss_pred HHHHHHHHHh---------cCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHH
Confidence 9999999854 57899999999999999999999999999999999999 9999999999999999999999
Q ss_pred hhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhC
Q psy13480 361 GRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQR 440 (615)
Q Consensus 361 ~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~ 440 (615)
+++||+|+++|||+|+|+.|++||||||+ .++||||+|++|++|+||++|||++++++|+||||+|||+||++
T Consensus 184 ~~~ge~p~~~gyp~~~f~~~~~l~ERag~-------~~~GSiT~~~~v~~~~dD~~dpi~~~~~~i~dg~ivLsr~la~~ 256 (274)
T cd01133 184 ALLGRMPSAVGYQPTLATEMGALQERITS-------TKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRAIAEL 256 (274)
T ss_pred HHcCCCCCCcCcCccHHHHHHHHHHHhcC-------CCCcccceEEEEEecCCCCCCchHHHHHHhcceEEEEcHHHHhC
Confidence 99999999999999999999999999997 36899999999999999999999999999999999999999999
Q ss_pred CCCCCCccCccccchhc
Q psy13480 441 KHFPSINWLISYSKYMR 457 (615)
Q Consensus 441 g~yPAId~l~S~Sr~~~ 457 (615)
||||||||+.|+||+|+
T Consensus 257 g~~PAId~~~S~SR~~~ 273 (274)
T cd01133 257 GIYPAVDPLDSTSRILD 273 (274)
T ss_pred CCCCCcCCccchhcccC
Confidence 99999999999999985
No 49
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=2.4e-85 Score=671.78 Aligned_cols=239 Identities=26% Similarity=0.370 Sum_probs=227.1
Q ss_pred ccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccCCCCCCcchh-hHHhhhcCCCCEE-EEEeecCcchHH
Q psy13480 206 VWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVI-SQALSKYSNSDVI-VYVGCGERGNEM 282 (615)
Q Consensus 206 ~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l-~~~la~~~~advi-V~~~iGERg~Ev 282 (615)
+||++.++| +.+|.++++||.||+|+||+|+||+||||++|||++|+|||+| +++|++++++|++ ||++||||++|+
T Consensus 33 ~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~GKt~L~l~~i~~~~~~~v~~V~~~iGer~~ev 112 (274)
T cd01132 33 RRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKASTV 112 (274)
T ss_pred eeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCCccHHHHHHHHHhcCCCeEEEEEecccchHHH
Confidence 467777665 8899999999999999999999999999999999999999999 6899999988974 999999999999
Q ss_pred HHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhh
Q psy13480 283 AEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 362 (615)
Q Consensus 283 ~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~ 362 (615)
+||++++.+ .+.|+||++|+||||+|+.+|++++|+|+|+||||||+|+||||++||+||||+|+||||++
T Consensus 113 ~e~~~~~~~---------~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~ 183 (274)
T cd01132 113 AQVVKTLEE---------HGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLL 183 (274)
T ss_pred HHHHHHHHh---------cCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHh
Confidence 999999864 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCC
Q psy13480 363 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKH 442 (615)
Q Consensus 363 lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~ 442 (615)
+||+|+++|||+++|+.+++||||||++++. .++||||+|++|++||||++|||+|++++|+||||+|||+||++||
T Consensus 184 ~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~---~~~GSIT~i~~V~~~~dD~~~pi~~~~~~i~dg~ivLsr~la~~g~ 260 (274)
T cd01132 184 LRRPPGREAYPGDVFYLHSRLLERAAKLNDE---LGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNKGI 260 (274)
T ss_pred cCCCCCCcCcCchHHHHhHHHHHHhhhccCC---CCCcceEEEEEEEcCCCCcCcchHHHHHhhcCeEEEEcHHHHhCCC
Confidence 9999999999999999999999999998643 2589999999999999999999999999999999999999999999
Q ss_pred CCCCccCccccchh
Q psy13480 443 FPSINWLISYSKYM 456 (615)
Q Consensus 443 yPAId~l~S~Sr~~ 456 (615)
||||||+.|+||+.
T Consensus 261 yPaId~l~S~SR~g 274 (274)
T cd01132 261 RPAINVGLSVSRVG 274 (274)
T ss_pred CCCcCCcccccCCC
Confidence 99999999999973
No 50
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=1.6e-83 Score=674.49 Aligned_cols=291 Identities=31% Similarity=0.460 Sum_probs=273.5
Q ss_pred ccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHH
Q psy13480 206 VWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAE 284 (615)
Q Consensus 206 ~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e 284 (615)
+||+..+.| +.+|.++++||.||+++||.++|+++||+++|+|++|+|||+|+++|+++.++|++++++||||++|+++
T Consensus 33 ~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~ 112 (326)
T cd01136 33 RYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVRE 112 (326)
T ss_pred cccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHH
Confidence 456666554 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcC
Q psy13480 285 VLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLA 364 (615)
Q Consensus 285 ~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lg 364 (615)
|.+++.. .+.++||++|+||||+|+.+|++++|+|+|+||||||+|+||||++||+||||+|+||||+++|
T Consensus 113 ~~~~~~~---------~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~g~~Vll~~Dsltr~a~A~rei~~~~g 183 (326)
T cd01136 113 FIEKDLG---------EEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGLAAG 183 (326)
T ss_pred HHHHHHh---------cCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHHhcC
Confidence 9988632 5779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCC
Q psy13480 365 EMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFP 444 (615)
Q Consensus 365 E~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yP 444 (615)
|+|+++|||+++|+.|++||||||+. +.||||+|++|++||||++|||++++++++||||+|||+||++||||
T Consensus 184 e~p~~~gyp~~~~~~~~~l~ERag~~-------~~GSIT~i~tv~~~gdd~~dpi~~~~~~~~dg~ivL~r~la~~g~~P 256 (326)
T cd01136 184 EPPTTKGYPPSVFALLPRLLERAGNS-------DKGSITAFYTVLVEGDDLNEPIADAVRSILDGHIVLSRALAAAGHYP 256 (326)
T ss_pred CCCCcCCcChHHHHHhHHHHHHhcCC-------CCCCeeeeeeeeecCCCCCcchHHhhhhccceEEEEcCcHHHcCCCC
Confidence 99999999999999999999999995 36999999999999999999999999999999999999999999999
Q ss_pred CCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHHHHHhc--CCCCcHHhHHHHHHHHHHHHHccCC
Q psy13480 445 SINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVG--KASLAESDKITLEVAKLLKDDFLQQ 520 (615)
Q Consensus 445 AId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i~~~~g--~~~l~~~d~~il~~~~~i~~~fL~Q 520 (615)
||||+.|+||+++.+.. ++|++++.++|++|++|+|+++++++++ .+.+++.|++ +.+++.++ .||+|
T Consensus 257 Aid~~~S~SR~~~~~~~------~~~~~~a~~~r~~l~~y~e~~~~i~~g~y~~g~d~~~d~~-i~~~~~i~-~~l~Q 326 (326)
T cd01136 257 AIDVLKSISRLMNAVVT------PEHKEAARKLRELLSAYQEVEDLIRIGAYKKGSDPEVDEA-IKLLPKIE-AFLKQ 326 (326)
T ss_pred CcccccccccCccccCC------HHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCHHHHHH-HHhHHHHH-HHhCC
Confidence 99999999999998876 8999999999999999999999999854 4788888887 55666665 99999
No 51
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.6e-80 Score=644.23 Aligned_cols=418 Identities=30% Similarity=0.491 Sum_probs=380.4
Q ss_pred eeeEEEEEECceEEEEeCC---CCcceeEEEEcCc---eeEEEEEEEeCC-eEEEEEecCCCCCCCCCeEEEcCCcceee
Q psy13480 16 RFGFVYAVSGPVVTAEKMS---GSAMYELVRVGYF---ELVGEIIRLEGD-MATIQVYEETSGVTVGDPVLRTGKPLSVE 88 (615)
Q Consensus 16 ~~G~I~~I~Gpvv~a~g~~---~~~~~E~v~vg~~---~l~GEVI~i~~d-~a~iqvye~t~Gl~~G~~V~~tg~~lsv~ 88 (615)
..|+|++|.|+||.++... -+.++....+..+ .+.-||-.+-|| .+.....+.|.||..|..|..||+|++||
T Consensus 2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VP 81 (468)
T COG0055 2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVP 81 (468)
T ss_pred CCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEEe
Confidence 3599999999999999853 2678888888754 388899888777 57888899999999999999999999999
Q ss_pred cCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCC
Q psy13480 89 LGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPP 168 (615)
Q Consensus 89 lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp 168 (615)
+|.+.||||||-+|+|||..++....
T Consensus 82 VG~~~lgri~nvlG~~iD~~~~~~~~------------------------------------------------------ 107 (468)
T COG0055 82 VGKGTLGRIFNVLGEPIDEKGPIKAE------------------------------------------------------ 107 (468)
T ss_pred cchhhcccchhccCCcccccCCCCcc------------------------------------------------------
Confidence 99999999999999999986543210
Q ss_pred CCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceeecc
Q psy13480 169 KAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIP 247 (615)
Q Consensus 169 ~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~ 247 (615)
+ .-+||++++.| +.+.-+-++-|.|||||||.|.|+.||+++|+|
T Consensus 108 -------------~---------------------~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLF 153 (468)
T COG0055 108 -------------D---------------------FEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLF 153 (468)
T ss_pred -------------c---------------------cceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeee
Confidence 0 01578887777 444446678999999999999999999999999
Q ss_pred CCCCCCcchhhHHhhhc---CCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHH
Q psy13480 248 GAFGCGKTVISQALSKY---SNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREAS 324 (615)
Q Consensus 248 g~~G~GKt~l~~~la~~---~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s 324 (615)
||+|+|||++++.|.++ .+..+.||+|+|||.||-.|+++|+.+ .+.+++|++|...+|+||.+|.+.
T Consensus 154 GGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~e---------s~vl~ktalv~gQMNEpPGaR~RV 224 (468)
T COG0055 154 GGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKE---------SGVLDKTALVFGQMNEPPGARMRV 224 (468)
T ss_pred ccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHh---------cCCCCceeEEEeecCCCCcceeee
Confidence 99999999999988664 567789999999999999999999865 578999999999999999999999
Q ss_pred HHHHhhHHHHHHhC-CCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceE
Q psy13480 325 IYTGITLSEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVS 403 (615)
Q Consensus 325 ~~tg~tiAEyfrd~-G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT 403 (615)
+.||+|+||||||. |+||||++|++.||.+|-.|+|.+||+||+.-||.|.|.+.+..|.||--. .+.||||
T Consensus 225 altGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERIts-------tk~GSIT 297 (468)
T COG0055 225 ALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITS-------TKKGSIT 297 (468)
T ss_pred hhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhc-------CCCCceE
Confidence 99999999999986 999999999999999999999999999999999999999999999999976 5789999
Q ss_pred EEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcc-hhhhhhccCcchHHHHHHHHHHHH
Q psy13480 404 IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRA-LDDFYDKNHPEFVPLRTKVKEILQ 482 (615)
Q Consensus 404 ~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~-~~~~~~~~~~~~~~~~~~~~~~L~ 482 (615)
.+.||.+|.||++||-+-.+.+++|...+|||++|+.|+|||||+|.|.||.++. +.. .+|++++.+++++|+
T Consensus 298 SiQavyvPaDDlTDPapattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr~l~p~ivG------e~Hy~va~~vq~iLq 371 (468)
T COG0055 298 SVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVG------EEHYEVAREVQSILQ 371 (468)
T ss_pred EEEEEEeccccCCCcchhhhhhhcccceeeeHhHHhcCCCcccCcccccccccCccccc------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999986 343 689999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCC------CccCCHHHHHHHHHHHHH
Q psy13480 483 EEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPY------DRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 483 ~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~------d~~~~~~kq~~~L~~I~~ 544 (615)
+|+||++|++++|.++|+++||+++.+|++|+ .||+||+|... +.|+|+++++..++.|+.
T Consensus 372 rYkeLqDIIaILGmdELseedk~~V~rArki~-~FlSQpF~vAE~FTg~pG~~V~l~dti~~fk~Il~ 438 (468)
T COG0055 372 RYKELQDIIAILGMDELSEEDKLTVARARKIQ-RFLSQPFFVAEVFTGSPGKYVPLKDTIRGFKRILE 438 (468)
T ss_pred HHHHHHHHHHHhCchhcChhHHHHHHHHHHHH-HHhcCcchhhheecCCCceeeeHHHHHHHHHHHhC
Confidence 99999999999999999999999999999986 99999998653 799999999999999985
No 52
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=5.2e-77 Score=624.44 Aligned_cols=420 Identities=25% Similarity=0.424 Sum_probs=384.5
Q ss_pred cceeeEEEEEECceEEEEeCCCCcceeEEEEcC---ceeEEEEEEEeCCeEEEEEecCCCCCCCCCe-EEEcCCcceeec
Q psy13480 14 EGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGY---FELVGEIIRLEGDMATIQVYEETSGVTVGDP-VLRTGKPLSVEL 89 (615)
Q Consensus 14 ~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~---~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~-V~~tg~~lsv~l 89 (615)
...|-+|..|+||++.+++..+++++|+|.|.. ....|+|+.++++.+.+||||.|+||..++. |.++|+++.+++
T Consensus 4 ~~~Y~~i~~i~Gplv~ve~~eg~~y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~v 83 (463)
T COG1156 4 VKEYTTISEIKGPLIIVEGVEGASYGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPV 83 (463)
T ss_pred cceeeeEEEeccceEEEecccCCCcceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEee
Confidence 457889999999999999999999999999962 3688999999999999999999999999986 999999999999
Q ss_pred CcccccccccccccccCCCcccccccccc-CCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCC
Q psy13480 90 GPGILGSIFDGIQRPLKDINELSQSIYIP-KGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPP 168 (615)
Q Consensus 90 GpgLLGrI~DgigrPLd~~~~~~~~~~i~-~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp 168 (615)
+..||||||||.|+|+|+.+++....+++ .|
T Consensus 84 s~dllGRifnG~G~PiDggp~i~~e~~~dI~g------------------------------------------------ 115 (463)
T COG1156 84 SEDLLGRIFNGSGKPIDGGPEIVPEDRLDING------------------------------------------------ 115 (463)
T ss_pred cHHhhhhhhcCCCCcCCCCCcCCCCcccccCC------------------------------------------------
Confidence 99999999999999999987654322221 11
Q ss_pred CCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCCcccCCCCCCccccceeeeccccccccCceeeccC
Q psy13480 169 KAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPG 248 (615)
Q Consensus 169 ~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g 248 (615)
+ |+. ...|..+.+++.||+.+||+|.++.+||+.-||.
T Consensus 116 ----------~----------------------------~~N----P~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFS 153 (463)
T COG1156 116 ----------A----------------------------PIN----PYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFS 153 (463)
T ss_pred ----------C----------------------------CCC----chhhhChhhHhhcCccHHhhhhhhhccccccccc
Confidence 1 111 2346667899999999999999999999999999
Q ss_pred CCCCCcchhhHHhhhcCCCCE------EEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHH
Q psy13480 249 AFGCGKTVISQALSKYSNSDV------IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322 (615)
Q Consensus 249 ~~G~GKt~l~~~la~~~~adv------iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~ 322 (615)
++|---.-|+.|||+++..+. +|++++|-...|...|.++|.+ .++++|++++.|.+|+|+.+|.
T Consensus 154 gSGlphN~LaaqIarQA~v~~~~e~favVfaamGit~eea~fF~~~fe~---------tGal~r~vlflnlA~dp~vEri 224 (463)
T COG1156 154 GSGLPHNELAAQIARQATVDGEEEEFAVVFAAMGITHEEALFFMDEFEE---------TGALDRAVLFLNLADDPAVERI 224 (463)
T ss_pred CCCCchHHHHHHHHHhcccCCCccceeEEEeecCccHHHHHHHHHHHHh---------hhhhhhhHhhhhccCCCceeEe
Confidence 999999999999999988775 9999999999999999999964 5789999999999999999999
Q ss_pred HHHHHHhhHHHHHH-hCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCc
Q psy13480 323 ASIYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401 (615)
Q Consensus 323 ~s~~tg~tiAEyfr-d~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GS 401 (615)
..+..|+|.||||+ +.++|||++.-|+|.||+||||||.+.+|.|+++|||+||++.||.+|||||+++ .++||
T Consensus 225 ~tPr~aLt~AEylA~e~~~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~-----g~~GS 299 (463)
T COG1156 225 ITPRMALTVAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIR-----GRKGS 299 (463)
T ss_pred cchhHHHHHHHHHhccCCceEEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhceec-----cCCCc
Confidence 99999999999999 6899999999999999999999999999999999999999999999999999997 57999
Q ss_pred eEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhh--hhhccCcchHHHHHHHHH
Q psy13480 402 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDD--FYDKNHPEFVPLRTKVKE 479 (615)
Q Consensus 402 IT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~--~~~~~~~~~~~~~~~~~~ 479 (615)
||.+++.++|+||++|||||+|.+|+.|||+|||+|..+|+||+||++.|+||+|+.... .++ .+|..+.+++-+
T Consensus 300 iTqipIlTMP~DDITHPIPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~giG~g~TR---eDH~~~snql~a 376 (463)
T COG1156 300 ITQIPILTMPGDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGIGEGKTR---EDHGDVSNQLYA 376 (463)
T ss_pred eEEEEeeecCCCCcCCCCCcccceeccceEEEEhhcccCCcCCCccccccHHHHhhcccCCCccc---cccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998633 244 578889999999
Q ss_pred HHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHH
Q psy13480 480 ILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 480 ~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~ 544 (615)
.+++.+++.+++.++|+++|++.|+..|+++..++..|++|.. ++.-|+++++..-+.|+.
T Consensus 377 ~YA~g~d~r~l~avvge~aLs~~D~~~l~F~d~FE~~fi~qg~----~enrsieetLdlgW~lL~ 437 (463)
T COG1156 377 AYAEGRDLRELVAVVGEEALSERDRKYLKFADLFEQRFIKQGR----YENRSIEETLDLGWELLS 437 (463)
T ss_pred HHhcchhHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHhccc----ccCCCHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999985 677899999998888775
No 53
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=3.3e-72 Score=559.54 Aligned_cols=215 Identities=44% Similarity=0.676 Sum_probs=204.9
Q ss_pred cceeeeccccccccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcce
Q psy13480 227 TGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKR 306 (615)
Q Consensus 227 TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~r 306 (615)
||+|+||+|+||+||||++|+|++|+|||+|+++|+++.++|++||++||||++|++||++++.+ .++|+|
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d~~V~~~iGer~~Ev~~~~~~~~~---------~~~~~~ 71 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQDADVVVYALIGERGREVTEFIEELKG---------EGALER 71 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCTTTEEEEEEESECHHHHHHHHHHHHH---------TTGGGG
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhcccccceeeeeccccchhHHHHHHHHhh---------cccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999843 678999
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHh
Q psy13480 307 TTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYER 386 (615)
Q Consensus 307 tvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ER 386 (615)
|++|+||+|+|+++|++++|+|+|+||||||||+|||+++||+||||+|+||||+++||||+++|||+++|+.|++||||
T Consensus 72 t~vv~~t~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l~ER 151 (215)
T PF00006_consen 72 TVVVAATSDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASLYER 151 (215)
T ss_dssp EEEEEEETTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHHHTT
T ss_pred cccccccchhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHHHHHHHhhhcccccccccccccchhccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCcccc
Q psy13480 387 AGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYS 453 (615)
Q Consensus 387 AG~~~~~~~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~S 453 (615)
||++ ++.+++||||+|++|++|+||++|||++++++++||||+|||+||++||||||||+.|+|
T Consensus 152 ag~~---~~~~~~GSIT~~~~v~~~~~d~~~pi~~~~~~~~dg~i~L~r~la~~~~~PAId~~~S~S 215 (215)
T PF00006_consen 152 AGKV---NSEEGGGSITAIPTVLVPGDDITDPIPDNTKSILDGHIVLSRKLAERGIFPAIDVLKSVS 215 (215)
T ss_dssp SEEB---STTTTSEEEEEEEEEEESTTBTTSHHHHHHHTTSSEEEEB-HHHHHTT-SS-BETTTEEE
T ss_pred hhcc---ccccCCceeeeecccccccccccchHHHHHHhhcceEEEeCHHHHhCCCCCccCCccCCC
Confidence 9998 345689999999999999999999999999999999999999999999999999999998
No 54
>KOG1351|consensus
Probab=100.00 E-value=3.9e-70 Score=552.87 Aligned_cols=423 Identities=26% Similarity=0.397 Sum_probs=376.1
Q ss_pred CCcceeeEEEEEECceEEEEeCCCCcceeEEEEc--C-ceeEEEEEEEeCCeEEEEEecCCCCCCCC-CeEEEcCCccee
Q psy13480 12 DREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVG--Y-FELVGEIIRLEGDMATIQVYEETSGVTVG-DPVLRTGKPLSV 87 (615)
Q Consensus 12 ~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg--~-~~l~GEVI~i~~d~a~iqvye~t~Gl~~G-~~V~~tg~~lsv 87 (615)
.+.-.|-+|.+|+||+|.......++..|+|.+. + ....|+|+.++|++|++||||.|+||..- ..|.+||+.|..
T Consensus 19 ~prl~y~tv~gvngplvild~vkfp~y~eiv~ltlpdgt~r~gqvlev~g~kavvqvfegtsgid~k~t~~eftg~~lr~ 98 (489)
T KOG1351|consen 19 EPRLTYRTVSGVNGPLVILDKVKFPKYAEIVNLTLPDGSVRSGQVLEVSGEKAVVQVFEGTSGIDAKKTTVEFTGEILRT 98 (489)
T ss_pred CCceeEeeecccCCceEEEecccccchhhheEEecCCCCeecceEEEecCCeeEEEEeccccccccccceEEEecccccc
Confidence 4566789999999999999999889999999774 3 35789999999999999999999999987 579999999999
Q ss_pred ecCcccccccccccccccCCCcccccccccc-CCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecC
Q psy13480 88 ELGPGILGSIFDGIQRPLKDINELSQSIYIP-KGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIM 166 (615)
Q Consensus 88 ~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~-~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~ 166 (615)
|++.++|||||||.|+|+|+.+++...+|+. .|.++||
T Consensus 99 pvsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp----------------------------------------- 137 (489)
T KOG1351|consen 99 PVSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINP----------------------------------------- 137 (489)
T ss_pred cccHHHhhhhhcCCCCccCCCCCcChHHhhccCCCcCCc-----------------------------------------
Confidence 9999999999999999999988776555554 3322222
Q ss_pred CCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCCcccCCCCCCccccceeeeccccccccCceeec
Q psy13480 167 PPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAI 246 (615)
Q Consensus 167 pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I 246 (615)
..|.-+.|.+.||+-.||.+..|++||++.|
T Consensus 138 -------------------------------------------------~~riypeemiqtgis~idvmnsiargqkipi 168 (489)
T KOG1351|consen 138 -------------------------------------------------YARIYPEEMIQTGISAIDVMNSIARGQKIPI 168 (489)
T ss_pred -------------------------------------------------ccccChHHHHHhCchHHhhhhHHhccCccce
Confidence 2345578899999999999999999999999
Q ss_pred cCCCCCCcchhhHHhhhcC-------------CCC--EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEE
Q psy13480 247 PGAFGCGKTVISQALSKYS-------------NSD--VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVA 311 (615)
Q Consensus 247 ~g~~G~GKt~l~~~la~~~-------------~ad--viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlva 311 (615)
|..+|--...+..||.+++ +-| .|||+++|-.-+..+.|..+|.+ .+.|+|++|+.
T Consensus 169 fsaaglphneiaaqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfee---------ngsm~~v~lfl 239 (489)
T KOG1351|consen 169 FSAAGLPHNEIAAQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEE---------NGSMERVCLFL 239 (489)
T ss_pred eecCCCChhHHHHHHHHhcCccccCCcccccccccceeeeehhhcccHHHHHHHHhhHHh---------cCCccceEEEE
Confidence 9999999999999987642 111 49999999988888888888864 57899999999
Q ss_pred eCCCCCHHHHHHHHHHHhhHHHHHHh-CCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccc
Q psy13480 312 NTSNMPVAAREASIYTGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRV 390 (615)
Q Consensus 312 nTsn~p~~~R~~s~~tg~tiAEyfrd-~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~ 390 (615)
|.+|+|..+|...+..|+|.|||++. .++|||+++.|+|.||+|+||+|.+.+|.||++|||+|++.+||.+|||||++
T Consensus 240 nlandptieriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrv 319 (489)
T KOG1351|consen 240 NLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRV 319 (489)
T ss_pred ecCCCCchhhhcchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHHHHHHHhccc
Confidence 99999999999999999999999995 59999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcch-hh-hhhccCc
Q psy13480 391 KCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRAL-DD-FYDKNHP 468 (615)
Q Consensus 391 ~~~~~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~-~~-~~~~~~~ 468 (615)
+ ++.||||.|+++.+|++|+++||+|.|.+|++|+|+.||+|+++.+||+||+|.|+||+|... .+ ..+ .
T Consensus 320 e-----gr~gsitqipiltmpnddithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksaigegmtr---~ 391 (489)
T KOG1351|consen 320 E-----GRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTR---K 391 (489)
T ss_pred c-----cCCCceeeeeeEecCCcccCCCCCcccceeecceEEEehhhhcccCCCCcccchhHHHHHHHHhcCCccc---c
Confidence 7 689999999999999999999999999999999999999999999999999999999999875 33 334 5
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHH
Q psy13480 469 EFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRN 541 (615)
Q Consensus 469 ~~~~~~~~~~~~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~ 541 (615)
+|.++.+++-..++-.++.+.+.+++|+++|+.+|++.|++-..++..|+.|.+|+....+-+++-.+.+|+.
T Consensus 392 dh~dvsnqlya~yaigkdvqamkavvgeeals~ed~l~lefl~kfek~fi~qg~yenrtvfesldi~w~llri 464 (489)
T KOG1351|consen 392 DHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFISQGAYENRTVFESLDIAWQLLRI 464 (489)
T ss_pred cchhhHHHHHHHHHhcchHHHHHHHhcccccChhhhHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHH
Confidence 6777888888888999999999999999999999999999999999999999998776666666655555543
No 55
>KOG1350|consensus
Probab=100.00 E-value=1.1e-68 Score=546.72 Aligned_cols=424 Identities=28% Similarity=0.445 Sum_probs=369.1
Q ss_pred cceeeEEEEEECceEEEEeCCC-CcceeEEEEc--CceeEEEEEEEeCCe-EEEEEecCCCCCCCCCeEEEcCCcceeec
Q psy13480 14 EGRFGFVYAVSGPVVTAEKMSG-SAMYELVRVG--YFELVGEIIRLEGDM-ATIQVYEETSGVTVGDPVLRTGKPLSVEL 89 (615)
Q Consensus 14 ~~~~G~I~~I~Gpvv~a~g~~~-~~~~E~v~vg--~~~l~GEVI~i~~d~-a~iqvye~t~Gl~~G~~V~~tg~~lsv~l 89 (615)
....|+|..|.|+||.+....+ ..+..-..|. +.++.-||-.+-|++ +....++.|+||..|.+|..||.|++||+
T Consensus 49 ~~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipV 128 (521)
T KOG1350|consen 49 KKNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISIPV 128 (521)
T ss_pred cccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCceeeeHHHHHhCcCeEEEEEecCchhhhcCcccccCCCceeeec
Confidence 3457999999999999987654 4454444443 457889998888774 77888999999999999999999999999
Q ss_pred CcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCC
Q psy13480 90 GPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPK 169 (615)
Q Consensus 90 GpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~ 169 (615)
||+.||||+|-+|+|+|..+++.... |.
T Consensus 129 G~~tLGRI~NViGePiDerGpi~s~~------------------~~---------------------------------- 156 (521)
T KOG1350|consen 129 GPETLGRIMNVIGEPIDERGPIKSKK------------------YS---------------------------------- 156 (521)
T ss_pred CHHHHhhHHHhcCCcccccCCccccc------------------cc----------------------------------
Confidence 99999999999999999887664211 11
Q ss_pred CCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccC
Q psy13480 170 AKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPG 248 (615)
Q Consensus 170 ~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g 248 (615)
|++...| +.+--.-.+-|.|||+|+|.|.|-+||+++|+||
T Consensus 157 --------------------------------------~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFG 198 (521)
T KOG1350|consen 157 --------------------------------------PIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 198 (521)
T ss_pred --------------------------------------ccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeec
Confidence 1222222 1222223467999999999999999999999999
Q ss_pred CCCCCcchhhHHhhhc---CCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHH
Q psy13480 249 AFGCGKTVISQALSKY---SNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASI 325 (615)
Q Consensus 249 ~~G~GKt~l~~~la~~---~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~ 325 (615)
++|+|||+|.+.|.++ ++-.+.||+++|||.||-.++++|+.+-..-. . ++.-.+..||....|+||.+|.+.+
T Consensus 199 GAGVGKTVlImELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gVI~--l-~~~~SKvaLV~GQMNePPGARaRV~ 275 (521)
T KOG1350|consen 199 GAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIN--L-EGETSKVALVYGQMNEPPGARARVA 275 (521)
T ss_pred cCCccceeeHHHHHHHHHHhcCCeEEeeccccccccccHHHHHHHhcCeee--c-cCCcceEEEEeeccCCCCCceeeee
Confidence 9999999999988765 45668999999999999999999986522111 1 2334789999999999999999999
Q ss_pred HHHhhHHHHHHhC-CCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEE
Q psy13480 326 YTGITLSEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSI 404 (615)
Q Consensus 326 ~tg~tiAEyfrd~-G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~ 404 (615)
.||+|+||||||+ |.||||++|++.||.+|-.|+|..||++|+.-||.|.|..++..+.||.-. .++||||.
T Consensus 276 LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERITt-------TkkGSiTS 348 (521)
T KOG1350|consen 276 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT-------TKKGSITS 348 (521)
T ss_pred eecccHHHHhhccccceEEEeehhhhhhhccchHHHHHhccCccccccCcccccchhhhhHhhhc-------cccCceeE
Confidence 9999999999985 999999999999999999999999999999999999999999999999876 57999999
Q ss_pred EEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcc-hhhhhhccCcchHHHHHHHHHHHHh
Q psy13480 405 VGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRA-LDDFYDKNHPEFVPLRTKVKEILQE 483 (615)
Q Consensus 405 i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~ 483 (615)
+.+|.+|.||++||-+..|.+++|..-+|||.+|+.|+|||+|+|.|.||+|+. +.. .+|++.++.++++|+.
T Consensus 349 vQAvYVPADDLtDPaPattFaHLDAttVLSR~iaelgIYPAVDPLDStSrimdp~ivG------~eHY~vA~~Vqk~LQ~ 422 (521)
T KOG1350|consen 349 VQAVYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVG------EEHYNVARGVQKTLQD 422 (521)
T ss_pred EEEEEeehhccCCCCccceeeccchhhhhhhhhHhcCCccccCCccccccccCccccc------hHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999985 443 6899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCC------CCccCCHHHHHHHHHHHHH
Q psy13480 484 EEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSP------YDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 484 ~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~------~d~~~~~~kq~~~L~~I~~ 544 (615)
|+.|++|+++.|.+.|+++|++++.+|+.++ +||+|+++.. .+.++|+++++...+.|+.
T Consensus 423 YKsLQDIIAILGmDELSEeDkLTV~RARKiq-RFLSQPF~VAEvFTG~~GklV~l~~ti~gF~~iL~ 488 (521)
T KOG1350|consen 423 YKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFLSQPFQVAEVFTGHPGKLVPLEETIRGFKAILE 488 (521)
T ss_pred HHHHHHHHHHhCchhhchhhhhhHHHHHHHH-HHHcCchhhhhhhcCCCCceecHHHHHHHHHHHhc
Confidence 9999999999999999999999999999886 9999998743 3799999999999998875
No 56
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.5e-65 Score=544.27 Aligned_cols=301 Identities=19% Similarity=0.215 Sum_probs=270.1
Q ss_pred CCCCCCCCeEEEcCCcceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccC
Q psy13480 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGG 148 (615)
Q Consensus 69 t~Gl~~G~~V~~tg~~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g 148 (615)
..||+.|+.|..++++ ++|..+||||.|++|+|+|+.. . . .| |.-
T Consensus 56 ~~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~--~-~----------------~~-~~~------------ 100 (380)
T PRK12608 56 RFNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA--R-R----------------PH-FDD------------ 100 (380)
T ss_pred HhCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhcc--c-c----------------cC-cCc------------
Confidence 3589999999999999 9999999999999999999752 1 0 00 000
Q ss_pred cceeeeeccceeeeeecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCCcccCCCCCCcc-cc
Q psy13480 149 DQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPL-LT 227 (615)
Q Consensus 149 ~~~g~v~e~~~~~h~i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl-~T 227 (615)
. . |+. ..+|.++.+++ .+
T Consensus 101 --------------~--~-----------------------------------------pi~----p~~R~~ie~~~~~~ 119 (380)
T PRK12608 101 --------------L--T-----------------------------------------PLH----PRERLRLETGSDDL 119 (380)
T ss_pred --------------C--C-----------------------------------------CCC----ccccccccccCcch
Confidence 0 0 111 24566667777 89
Q ss_pred ceeeeccccccccCceeeccCCCCCCcchhhHHhhhcC---CCCE-EEEEeecCcchHHHHHHHhcccccccccCccccC
Q psy13480 228 GQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS---NSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESI 303 (615)
Q Consensus 228 G~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~---~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~ 303 (615)
|+|+||+|+|||||||++|+|++|||||||+++|++.. +.|+ |+|++||||++|+++|++...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~------------- 186 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVK------------- 186 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHh-------------
Confidence 99999999999999999999999999999999998753 3366 699999999999999998752
Q ss_pred cceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHH
Q psy13480 304 MKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASF 383 (615)
Q Consensus 304 m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~ 383 (615)
.+|+++|+|+|+..|.+..++++++||||+++|+||+|++||+||||+|+||+++..||+|+ .|||+++|+.+++|
T Consensus 187 ---~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s-~G~~~s~~~~~~rl 262 (380)
T PRK12608 187 ---GEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLS-GGVDARALQRPKRL 262 (380)
T ss_pred ---hhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCC-CCcChHHHhhhHHH
Confidence 27999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHhhccccccCCCCCCCceEEEEeecCC-CCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhh
Q psy13480 384 YERAGRVKCLGNPDREGSVSIVGAVSPP-GGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDF 462 (615)
Q Consensus 384 ~ERAG~~~~~~~~~~~GSIT~i~~Vs~~-ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~ 462 (615)
+||||++ +++||||+|+||+++ |+||+|||.+++++++||||+|||+||++|||||||+++|.||.++.+.+
T Consensus 263 ~~~A~~~------~~~GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~~~fPAIDi~~S~sR~~~~l~~- 335 (380)
T PRK12608 263 FGAARNI------EEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELLLD- 335 (380)
T ss_pred HHhcCCC------CCCcchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhCCCCCccCcccccCcchhhcCC-
Confidence 9999996 468999999999999 99999999999999999999999999999999999999999999999987
Q ss_pred hhccCcchHHHHHHHHHHHHhHHHHHHHHHHh
Q psy13480 463 YDKNHPEFVPLRTKVKEILQEEEDLSEIVQLV 494 (615)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~L~~~~el~~i~~~~ 494 (615)
+++.+.+.++|++|+.|++.+.+-.++
T Consensus 336 -----~~~~~~~~~~R~~l~~~~~~e~~~~~~ 362 (380)
T PRK12608 336 -----SKELEKVRRLRRALASRKPVEAMEALL 362 (380)
T ss_pred -----HHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 899999999999999999998877765
No 57
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.6e-59 Score=499.59 Aligned_cols=252 Identities=22% Similarity=0.276 Sum_probs=236.7
Q ss_pred CcccCCCCCC--ccccceeeeccccccccCceeeccCCCCCCcchhhHHhhhcCC---CCE-EEEEeecCcchHHHHHHH
Q psy13480 214 PVTEKLPANY--PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN---SDV-IVYVGCGERGNEMAEVLR 287 (615)
Q Consensus 214 p~~~r~~~~~--pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~---adv-iV~~~iGERg~Ev~e~~~ 287 (615)
...+|+++.+ |+.||+|+||+|+|||||||++|+||+|+|||||+++|+++.. .|+ |++++||||++|++++.+
T Consensus 140 ~p~~R~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqr 219 (416)
T PRK09376 140 YPNERLRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQR 219 (416)
T ss_pred ChhhcccccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHH
Confidence 3678888888 8999999999999999999999999999999999999987543 466 588899999999999997
Q ss_pred hcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCC
Q psy13480 288 DFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMP 367 (615)
Q Consensus 288 ~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P 367 (615)
++. .++|++|+|+|+..|.+++|+++++||||+++|+||+|++||+||||+|+||+++..||+|
T Consensus 220 sIl----------------g~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~ 283 (416)
T PRK09376 220 SVK----------------GEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVL 283 (416)
T ss_pred Hhc----------------CcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCC
Confidence 751 3799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCC-CCCCCCchhhhhhcccceEEEecHHHHhCCCCCCC
Q psy13480 368 ADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPP-GGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSI 446 (615)
Q Consensus 368 ~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~-ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAI 446 (615)
+ .|||++.+..+++|+||||++ +++||||+|+||+++ |++|+|||++++++++|+||+|||+||++||||||
T Consensus 284 s-gG~~~~~~~~~~r~f~~Arn~------e~~GSlT~i~T~LvetGs~mdd~I~ee~kg~~n~~ivLdR~lA~~r~fPAI 356 (416)
T PRK09376 284 S-GGVDANALHRPKRFFGAARNI------EEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAI 356 (416)
T ss_pred C-CCCChhHhhhhHHHHHhhcCC------CCCcceEEEEEEEecCCCCCCccHHHHHhhhcCceEeECHHHHhcCCCCcc
Confidence 9 999999999999999999986 468999999999999 99999999999999999999999999999999999
Q ss_pred ccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHHHHHh
Q psy13480 447 NWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLV 494 (615)
Q Consensus 447 d~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i~~~~ 494 (615)
||+.|.||.++.+.+ +++++.+.++|++|+.|++++.+-.+.
T Consensus 357 Di~~S~sR~~~~l~~------~~~~~~~~~lR~~l~~~~~~e~~e~~~ 398 (416)
T PRK09376 357 DINRSGTRKEELLLS------PEELQKVWILRKILSPMDEVEAMEFLL 398 (416)
T ss_pred CccccccccccccCC------HHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 999999999999987 899999999999999999988877765
No 58
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=7e-59 Score=509.14 Aligned_cols=243 Identities=21% Similarity=0.278 Sum_probs=226.4
Q ss_pred CcccCCCCC-CccccceeeeccccccccCceeeccCCCCCCcchhhHHhhh-----cCCCCEEEEEeecCcchHHHHHHH
Q psy13480 214 PVTEKLPAN-YPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK-----YSNSDVIVYVGCGERGNEMAEVLR 287 (615)
Q Consensus 214 p~~~r~~~~-~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~-----~~~adviV~~~iGERg~Ev~e~~~ 287 (615)
+..+|+++. +|+.||+|+||+|+|||||||++|+||+|||||+|+++||+ +.+++ |||++||||++||++|.
T Consensus 388 ~P~~R~~le~e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~-~ivvLIgERpeEVtdm~- 465 (672)
T PRK12678 388 YPNERLRLETEPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECH-LMVVLVDERPEEVTDMQ- 465 (672)
T ss_pred ChHHhcccccCcccccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeE-EEEEEEeCchhhHHHHH-
Confidence 367888888 89999999999999999999999999999999999999998 34443 56999999999999875
Q ss_pred hcccccccccCccccCcceEE---EEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcC
Q psy13480 288 DFPELTIEVDGVTESIMKRTT---LVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLA 364 (615)
Q Consensus 288 ~f~~l~~~~~g~~~~~m~rtv---lvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lg 364 (615)
||| ||++|+|+|+.+|..++|+||++||||+|+|+|||||+||+||||+|+|||+...|
T Consensus 466 ------------------rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ArAyrev~~~sG 527 (672)
T PRK12678 466 ------------------RSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITRLGRAYNLAAPASG 527 (672)
T ss_pred ------------------HhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHHHHHHHHhhcCCC
Confidence 445 99999999999999999999999999999999999999999999999999999999
Q ss_pred C-----CCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCC-CCCCCCchhhhhhcccceEEEecHHHH
Q psy13480 365 E-----MPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPP-GGDFSDPVTSATLGIVQVFWGLDKKLA 438 (615)
Q Consensus 365 E-----~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~-ggD~s~PV~~~t~~i~dg~i~Ldr~La 438 (615)
+ +|+..+|||+.|..+|+++| ++||||+|+||+++ |++|++||.+++++++|+||+|||+||
T Consensus 528 r~lSGG~d~~a~ypP~~F~~~AR~iE------------~gGSLTii~TvLVETGS~mDd~Ifeefkgtgn~elvLsR~LA 595 (672)
T PRK12678 528 RILSGGVDSTALYPPKRFFGAARNIE------------NGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELKLDRKLA 595 (672)
T ss_pred CccCCCCchhhccCccHHHHHHHhhc------------cCccceeeEEEEeccCCccCcchHHHHhhccCceeeECHHHH
Confidence 9 79999999999988888877 36999999999999 889999999999999999999999999
Q ss_pred hCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHHHHHh
Q psy13480 439 QRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLV 494 (615)
Q Consensus 439 ~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i~~~~ 494 (615)
++|||||||++.|.||+++.+.+ +++++++.++|++|+.|...+.+-.++
T Consensus 596 errifPAIDv~~S~SR~ee~l~~------~~e~~~~~~lRr~l~~~~~~~a~e~l~ 645 (672)
T PRK12678 596 DKRIFPAVDVNASGTRKEELLLS------PDELAIVHKLRRVLSGLDSQQAIDLLI 645 (672)
T ss_pred hCCCCCccCCCcCccccchhhCC------HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999987 899999999999999988887776665
No 59
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=6.5e-54 Score=458.27 Aligned_cols=242 Identities=21% Similarity=0.267 Sum_probs=226.0
Q ss_pred ccccceeeeccccccccCceeeccCCCCCCcchhhHHhhhcC---CCC-EEEEEeecCcchHHHHHHHhcccccccccCc
Q psy13480 224 PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS---NSD-VIVYVGCGERGNEMAEVLRDFPELTIEVDGV 299 (615)
Q Consensus 224 pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~---~ad-viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~ 299 (615)
|=..|+|+||.++||++||+++|+|++|+|||+|+++|++.- +.| +|+++.+|||++|++++++.+
T Consensus 151 ~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI---------- 220 (415)
T TIGR00767 151 TEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV---------- 220 (415)
T ss_pred ccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh----------
Confidence 446799999999999999999999999999999999998752 233 468899999999999999875
Q ss_pred cccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhh
Q psy13480 300 TESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAR 379 (615)
Q Consensus 300 ~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~ 379 (615)
...+|++|++.|+..|...++.++++||||+++|+||+|++||+||||+|+|||+++.||+|+ .||||++++.
T Consensus 221 ------lg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G~~~s-~G~~~~~~~~ 293 (415)
T TIGR00767 221 ------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLS-GGVDANALHR 293 (415)
T ss_pred ------hceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcCCCCC-CCcChhhhcc
Confidence 137999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHhhccccccCCCCCCCceEEEEeecCC-CCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcc
Q psy13480 380 LASFYERAGRVKCLGNPDREGSVSIVGAVSPP-GGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRA 458 (615)
Q Consensus 380 La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~-ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~ 458 (615)
+++|+||||+. +.+||||+|+||+++ |+||+|||.+++++++|||++|||+||++|||||||+++|.||.++.
T Consensus 294 ~~~~~~~a~~~------~~~GSiT~~~TvLvetg~~mdd~i~~e~kg~~~~~ivL~r~la~~~~fPAidi~~S~sR~~~~ 367 (415)
T TIGR00767 294 PKRFFGAARNI------EEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEEL 367 (415)
T ss_pred cHHHHhhcCCC------CCCcchhheEEEEeccCCCCCcchHHHhccccCCeEEECHHHHhCCCCCCcCcccccccchhh
Confidence 99999999986 468999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcchHHHHHHHHHHHHhHHHHHHHHHHh
Q psy13480 459 LDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLV 494 (615)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i~~~~ 494 (615)
+.+ +++.+.+.++|++|+.|.+.+.+-.+.
T Consensus 368 l~~------~~~~~~~~~~r~~l~~~~~~~~~~~~~ 397 (415)
T TIGR00767 368 LLT------PEELQKIWVLRKIISPMDSIEAMEFLI 397 (415)
T ss_pred cCC------HHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 987 899999999999999999888776665
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=6.1e-51 Score=414.89 Aligned_cols=237 Identities=22% Similarity=0.293 Sum_probs=221.5
Q ss_pred eeeeccccccccCceeeccCCCCCCcchhhHHhhhcCCC---CEE-EEEeecCcchHHHHHHHhcccccccccCccccCc
Q psy13480 229 QRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS---DVI-VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIM 304 (615)
Q Consensus 229 ~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a---dvi-V~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m 304 (615)
.|+||+|+||++|||++|+|++|+|||||+++++++.+. |++ +++.+|||+.|+.+|++.+
T Consensus 4 ~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I--------------- 68 (249)
T cd01128 4 TRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV--------------- 68 (249)
T ss_pred hhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh---------------
Confidence 499999999999999999999999999999999987544 554 6677999999999999764
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHH
Q psy13480 305 KRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFY 384 (615)
Q Consensus 305 ~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ 384 (615)
++++|++++|.|+..|.+++|.++++||||+++|++|+|++|+++|||+|+||+++..||+| ..||||++|+.+++++
T Consensus 69 -~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~~~~~q~~ 146 (249)
T cd01128 69 -KGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANALHKPKRFF 146 (249)
T ss_pred -ccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhhhhhHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred HhhccccccCCCCCCCceEEEEeecCC-CCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhh
Q psy13480 385 ERAGRVKCLGNPDREGSVSIVGAVSPP-GGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFY 463 (615)
Q Consensus 385 ERAG~~~~~~~~~~~GSIT~i~~Vs~~-ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~ 463 (615)
||||.. .++||||+++||+++ +++++||+.+++++++|+||+||++|+..||||||||+.|.||.++.+.+
T Consensus 147 ~~Ar~~------~~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~~ll~~-- 218 (249)
T cd01128 147 GAARNI------EEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLLD-- 218 (249)
T ss_pred HHhcCC------CCCCceEEeeeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccchhhCC--
Confidence 999985 358999999999999 77788899999999999999999999999999999999999998888865
Q ss_pred hccCcchHHHHHHHHHHHHhHHHHHHHHHHh
Q psy13480 464 DKNHPEFVPLRTKVKEILQEEEDLSEIVQLV 494 (615)
Q Consensus 464 ~~~~~~~~~~~~~~~~~L~~~~el~~i~~~~ 494 (615)
++|++.+.++|++|+.|++++++..++
T Consensus 219 ----~~~~~~~~~~r~~~~~~~~~~~~~~~~ 245 (249)
T cd01128 219 ----PEELQRMWLLRRVLSDMDPIEAMEFLL 245 (249)
T ss_pred ----HHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 678899999999999999999998876
No 61
>KOG1353|consensus
Probab=100.00 E-value=2.1e-35 Score=295.01 Aligned_cols=309 Identities=22% Similarity=0.297 Sum_probs=270.2
Q ss_pred CcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCcc
Q psy13480 13 REGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPG 92 (615)
Q Consensus 13 ~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpg 92 (615)
...++|+|.+|-+.+..+-|+.++.-.|+|.+. .++.|.-..++.+.+.+.+|++..-++.|+.|..||.-.-||+|+.
T Consensus 17 ~leEtgrVLsIGdGIArV~GL~nvQAeEmvEFs-sGlKgmalnle~~~vg~v~~g~d~~ikeg~~VkrTgaIvDVpvg~~ 95 (340)
T KOG1353|consen 17 DLEETGRVLSIGDGIARVYGLTNVQAEEMVEFS-SGLKGMALNLEGENVGVVVFGEDSLIKEGDTVKRTAAISDVPPLKA 95 (340)
T ss_pred chhhccceEEEcCceeeeecccccchHHHHhhh-ccccchhccccCCceEEEEEcCcceeccCceEEeeeeeeccCchHH
Confidence 356789999999999999999999999999985 6789999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCc
Q psy13480 93 ILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKG 172 (615)
Q Consensus 93 LLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g 172 (615)
||||+.|++|+|+|+.+++... +|+
T Consensus 96 LlgrvvdAlGn~idgkG~i~~~----------------------------------------------~~~--------- 120 (340)
T KOG1353|consen 96 LLGRVGCALGEPIDGNGKISAK----------------------------------------------ERR--------- 120 (340)
T ss_pred HhhhhhhhhcCeecCCCCcccc----------------------------------------------ccc---------
Confidence 9999999999999988765320 111
Q ss_pred ceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCCcccCCCCCCccccceeeeccccccccCceeeccCCCCC
Q psy13480 173 TVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGC 252 (615)
Q Consensus 173 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~ 252 (615)
+..|....+|+.||.+++|++.|||+||+.+|.|...+
T Consensus 121 ------------------------------------------ii~r~Sv~epmqtg~KAvdslVpigRgqrELiIgdRqT 158 (340)
T KOG1353|consen 121 ------------------------------------------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQT 158 (340)
T ss_pred ------------------------------------------cccceeeechhhhhhhHhhceeeeccCceEEEeccccC
Confidence 22345578999999999999999999999999999999
Q ss_pred CcchhhHH-hhh---cCCC------CEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHH
Q psy13480 253 GKTVISQA-LSK---YSNS------DVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322 (615)
Q Consensus 253 GKt~l~~~-la~---~~~a------dviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~ 322 (615)
|||.|.-. +.+ |.++ =+|||+++|++...+..++..+.+ .+.|++|++|++|++
T Consensus 159 GkTsla~dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~---------~~a~~y~ivv~atas------- 222 (340)
T KOG1353|consen 159 GKTSLAIDTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEE---------ADAMEYSIVVAATAS------- 222 (340)
T ss_pred CceeeeehhhhhhhhhcccccccceEEEEEEecccchhHHHHHHHHHHh---------cCCceEEEEEEeecc-------
Confidence 99998753 222 2222 259999999999999999988754 689999999999987
Q ss_pred HHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCce
Q psy13480 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSV 402 (615)
Q Consensus 323 ~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSI 402 (615)
T Consensus 223 -------------------------------------------------------------------------------- 222 (340)
T KOG1353|consen 223 -------------------------------------------------------------------------------- 222 (340)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHH
Q psy13480 403 SIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQ 482 (615)
Q Consensus 403 T~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 482 (615)
.+||.+.+||.|+.+| ||+|+|..+|+++|+.||||+..|+||+.+..+- ..+++.+..++.-|+
T Consensus 223 --------q~gdvsayiptnvisi-dgqi~l~t~lfy~girpainvg~svsrvgsaaq~------kamkqvag~~klela 287 (340)
T KOG1353|consen 223 --------QAGDVSAYIPTNVISI-DGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT------KAMKQVAGSLKLELA 287 (340)
T ss_pred --------cccceeeecccceeee-cchhHHHHHHHHhccchhheeeeEeeeccchHHH------HHHHHHhhhhhhHHH
Confidence 7789999999999999 9999999999999999999999999999998764 678899999999999
Q ss_pred hHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHH
Q psy13480 483 EEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVG 537 (615)
Q Consensus 483 ~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~ 537 (615)
+|+|+..+.|++ ..|....+.+|.++.++. ..|+|+.|.| ...++|+.
T Consensus 288 q~revaafaqfg--sdlda~tq~~l~rg~rlt-ellkq~qy~p----~~~e~qv~ 335 (340)
T KOG1353|consen 288 QYREVAAFAQFG--SDLDAATQQLLNRGVRLT-ELLKQGQYAP----LAIEEQVA 335 (340)
T ss_pred HHHHHHHHHHhc--ccccHHHHHHHHhhhHHH-HHHhcCCCCC----cchhhhee
Confidence 999999999985 566677888899999886 8999998766 45566543
No 62
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=1.7e-33 Score=290.86 Aligned_cols=236 Identities=22% Similarity=0.297 Sum_probs=206.4
Q ss_pred eeeccccccccCceeeccCCCCCCcchhhHHhhhc---CCCCE-EEEEeecCcchHHHHHHHhcccccccccCccccCcc
Q psy13480 230 RVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY---SNSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMK 305 (615)
Q Consensus 230 rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~---~~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~ 305 (615)
|+||.+.|||||||++|.+|+.+|||+|++.||+. .+.|+ .++.+|.||..||+|+.+..
T Consensus 162 RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV---------------- 225 (422)
T COG1158 162 RVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSV---------------- 225 (422)
T ss_pred HHHhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHhh----------------
Confidence 99999999999999999999999999999999873 45665 67789999999999998654
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHH
Q psy13480 306 RTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYE 385 (615)
Q Consensus 306 rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~E 385 (615)
+..||++|-|+||..+...+...+.-|..+-++|+||++++||+||.|+|++-+.-..|..-+- |--+..+.+--+|+-
T Consensus 226 ~geViaSTFDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLsG-GvD~nAL~~PKrFFG 304 (422)
T COG1158 226 KGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSG-GVDANALHRPKRFFG 304 (422)
T ss_pred cceEEeecCCCcchhhHHHHHHHHHHHHHHHHcCCcEEEEehhHHHHHHHhcccCCCCCCeecC-CcChhhhcCchhhhh
Confidence 2579999999999999999999999999999999999999999999999999876555544332 444444456678999
Q ss_pred hhccccccCCCCCCCceEEEEeecCC-CCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhh
Q psy13480 386 RAGRVKCLGNPDREGSVSIVGAVSPP-GGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYD 464 (615)
Q Consensus 386 RAG~~~~~~~~~~~GSIT~i~~Vs~~-ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~ 464 (615)
-|.++ +.+||+|+|+|.+++ |..|+|.|.+++++..++.+.|||+||++|+|||||+.+|-.|-.+.+.+
T Consensus 305 AARNI------EeGGSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRKEeLLl~--- 375 (422)
T COG1158 305 AARNI------EEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLS--- 375 (422)
T ss_pred hhhcc------ccCcchhhhhhhhhhcCCccchhhhhhhcCCCceEEEEhhhhhhcccccceecccCCcchHhhcCC---
Confidence 99888 579999999999999 56799999999999999999999999999999999999999999998877
Q ss_pred ccCcchHHHHHHHHHHHHhHHHHHHHHHHh
Q psy13480 465 KNHPEFVPLRTKVKEILQEEEDLSEIVQLV 494 (615)
Q Consensus 465 ~~~~~~~~~~~~~~~~L~~~~el~~i~~~~ 494 (615)
++..+....+|++|+...+.+.+-.++
T Consensus 376 ---~~~l~k~w~lRr~l~~md~~~a~e~li 402 (422)
T COG1158 376 ---PDELQKMWVLRRILSPMDEIDAIEFLI 402 (422)
T ss_pred ---HHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 788888899999887766666655554
No 63
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=99.39 E-value=5.9e-13 Score=145.48 Aligned_cols=237 Identities=6% Similarity=-0.210 Sum_probs=218.1
Q ss_pred EEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhcc
Q psy13480 310 VANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGR 389 (615)
Q Consensus 310 vanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~ 389 (615)
..++.+++..++.||.++++.++++++++++|+-+.++.+.+|+.+++|....+.+++.+..++.+..+.|+++|++-..
T Consensus 287 RT~liaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYE 366 (588)
T COG1155 287 RTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYE 366 (588)
T ss_pred eeeEeecCccchHHHhhhhhhhhhhHHHHHHhhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccCCCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhcc-Cc
Q psy13480 390 VKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKN-HP 468 (615)
Q Consensus 390 ~~~~~~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~-~~ 468 (615)
=...-...+.+++|...+|..+.++...++.+.+-+.+-.+|.+.-.|+.+.|+|-.+|..+++-+-+...+|++++ +.
T Consensus 367 RaG~v~~~~~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~~~~~~~ 446 (588)
T COG1155 367 RAGRVRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDLRSWYDE 446 (588)
T ss_pred hcCeeeecCCCcceEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHHHHHHHhhc
Confidence 44333344688999999999999999999999999999999999999999999999999999999999999999988 67
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHH
Q psy13480 469 EFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFY 546 (615)
Q Consensus 469 ~~~~~~~~~~~~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fy 546 (615)
++......+|..+++.-+.++-.+.++...-++.-.........+.+.|.+|-.++....+|+...++.+.+.++.-.
T Consensus 447 ~v~~~~~~~r~~a~~~Lq~e~elqeiv~lVG~eal~e~~~~il~va~~ire~fLqQnafd~vD~~~~~~kq~~mm~~i 524 (588)
T COG1155 447 NVSPEWGALRDQAMEILQRESELQEIVQLVGYDALPEKEKSILDVARIIREDFLQQNAFDEIDAYCSLRKQYLMLKAI 524 (588)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHhhcccCcccccCCHHHHHHHHHHH
Confidence 888999999999999999999988888899999888888888778778888877788899999999999999998743
No 64
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=99.37 E-value=9.3e-12 Score=112.79 Aligned_cols=109 Identities=31% Similarity=0.540 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHH-HHHHHHHHHHH
Q psy13480 471 VPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGM-LRNMIAFYDMS 549 (615)
Q Consensus 471 ~~~~~~~~~~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~-L~~I~~fyd~a 549 (615)
.+++++++.+|++|+||+++++++|.++||++|+.++++|+++++ ||+||+|+++ |+++|+.+ +...+
T Consensus 1 k~v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e-~LkQ~~~~~~----~~~~q~~~~~~~~~------ 69 (113)
T PF00306_consen 1 KKVAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE-FLKQNAFDPV----PLEKQYVMILEETI------ 69 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH-HT-BSTTTTT----SSHHHHHHHHHHHH------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HcCCCCCCCC----cCcchhhhHHHHHH------
Confidence 368999999999999999999999999999999999999999997 9999999986 99999999 33322
Q ss_pred HHHHHccccchhhhhHHHHHhhhhHHHHHHhcCCCCCCCCc-hhHHHHHHHH--HHHHHHHHHHHhhcC
Q psy13480 550 RHAVESTAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKD-GEAKTRADFD--QLYEDIQQAFRNLED 615 (615)
Q Consensus 550 ~~ai~~g~~~~~~i~~~~i~~~~~~~~~~i~~~k~~~~~~~-~e~~~~~~~~--~l~~~i~~~f~~l~~ 615 (615)
++++.+.+++|.+. ++ ....+...+. ++.++|.+.|++|++
T Consensus 70 ------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 113 (113)
T PF00306_consen 70 ------------------------DLFYAILRGKFDDI-PEEELEKIETKDIEKKLNKEIEEKFKELEE 113 (113)
T ss_dssp ------------------------HHHHHHHTTTTTTS--GGGHHHHHHHHHHHHHCHHHHHHHHH---
T ss_pred ------------------------HHHHHHHhCCCccC-CHHHHHHHhhHHHHHHHHHHHHHHHhhhcC
Confidence 33446777777522 32 2323322222 477889999988863
No 65
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.13 E-value=1.2e-09 Score=100.46 Aligned_cols=158 Identities=29% Similarity=0.404 Sum_probs=122.8
Q ss_pred eeccCCCCCCcchhhHHhhhcCC--CCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHH
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSN--SDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~--adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R 321 (615)
.+|.|++|+|||+++.+++.+.. ...++|+.+.+..+++.+....+.. ....++..++...++.+...+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 72 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESL---------KGALDNLIIVFATADDPAAAR 72 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhh---------ccccccEEEEEcCCCCCcHHH
Confidence 57899999999999999987532 3458899998888877766544422 234566677777776665544
Q ss_pred HHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCc
Q psy13480 322 EASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401 (615)
Q Consensus 322 ~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GS 401 (615)
.. .++.++.......++++|+++.++++..+. ..+++..+...+.++++++.+ ..
T Consensus 73 ~~------~~~~~~~~~~~~~~lviDe~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~~----------~~ 127 (165)
T cd01120 73 LL------SKAERLRERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERARK----------GG 127 (165)
T ss_pred HH------HHHHHHHhCCCCEEEEEEcHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHHhc----------CC
Confidence 33 557777888888899999999999887653 446788888889999998754 57
Q ss_pred eEEEEeecCCCCCCCCc----hhhhhhcccceEEEecH
Q psy13480 402 VSIVGAVSPPGGDFSDP----VTSATLGIVQVFWGLDK 435 (615)
Q Consensus 402 IT~i~~Vs~~ggD~s~P----V~~~t~~i~dg~i~Ldr 435 (615)
+|++.+.-.+.++...| .++.+..+.|+.|.|+|
T Consensus 128 ~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 128 VTVIFTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred ceEEEEEecCCccccCcccccCccceeeecceEEEEeC
Confidence 89999999998888888 88999999999999875
No 66
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=98.94 E-value=2.5e-09 Score=88.14 Aligned_cols=63 Identities=37% Similarity=0.504 Sum_probs=56.9
Q ss_pred EEEEECceEEEEeCCC--CcceeEEEEc--C--ceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcC
Q psy13480 20 VYAVSGPVVTAEKMSG--SAMYELVRVG--Y--FELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTG 82 (615)
Q Consensus 20 I~~I~Gpvv~a~g~~~--~~~~E~v~vg--~--~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg 82 (615)
|++|.||++.+++... +.+++.+.+. + ..+.|||+++++|.+.+|+|++|+||++|++|.+||
T Consensus 1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~G~~V~~tG 69 (69)
T PF02874_consen 1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFGNGVLGEVVGLDEDEVRLQVFGSTDGLSRGTEVRFTG 69 (69)
T ss_dssp EEEEECTEEEEECSEEEEEETTTEEEEEEEEETTEEEEEEEEEETTEEEEEESSSGTTSBTTCEEEEEE
T ss_pred CccccceEEEEEcCCCCCCCccEEEEEecccceeeeeeeecccCccEEEEEEecCCCCCCCCCEEEcCc
Confidence 6899999999977666 6788888876 3 679999999999999999999999999999999997
No 67
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.73 E-value=0.00014 Score=63.75 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=57.9
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCCC--EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNSD--VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMP 317 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~ad--viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p 317 (615)
+|+.+.|.|++|||||+++..+++..... -++++.+.. ..+....... ......+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------------~~~~~~~~~ 59 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED-ILEEVLDQLL--------------------LIIVGGKKA 59 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE-ccccCHHHHH--------------------hhhhhccCC
Confidence 47889999999999999999999876665 255555543 2222221110 001111122
Q ss_pred HHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHh
Q psy13480 318 VAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISG 361 (615)
Q Consensus 318 ~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~ 361 (615)
...+...+....+.|++.. ..++++|++.+..........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~ 99 (148)
T smart00382 60 SGSGELRLRLALALARKLK----PDVLILDEITSLLDAEQEALL 99 (148)
T ss_pred CCCHHHHHHHHHHHHHhcC----CCEEEEECCcccCCHHHHHHH
Confidence 2233444556666666554 688999999876655554433
No 68
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.65 E-value=0.00018 Score=71.45 Aligned_cols=113 Identities=23% Similarity=0.282 Sum_probs=66.9
Q ss_pred cccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcC-CCC-EEEEEeecCc-chHHHHHHHhcccccccccCc
Q psy13480 225 LLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYS-NSD-VIVYVGCGER-GNEMAEVLRDFPELTIEVDGV 299 (615)
Q Consensus 225 l~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~-~ad-viV~~~iGER-g~Ev~e~~~~f~~l~~~~~g~ 299 (615)
+-||+.-+|.++. +.+|....|.|++|+|||+++.+++... ..+ -++|+..-+- ...+.++.+..+
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~--------- 71 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRP--------- 71 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHCh---------
Confidence 4699999999996 8889999999999999999999988643 222 3666643221 122223322211
Q ss_pred cccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHH
Q psy13480 300 TESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEA 355 (615)
Q Consensus 300 ~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeA 355 (615)
.....+ +++...++. .+.. ..+...+.+...+ --++++||++.+..+
T Consensus 72 -~~~~~~-~~~~~~~~~--~~~~----~~~~~~~~~~~~~-~~lvvIDsi~~l~~~ 118 (218)
T cd01394 72 -ERAASS-IIVFEPMDF--NEQG----RAIQETETFADEK-VDLVVVDSATALYRL 118 (218)
T ss_pred -HhhhcC-EEEEeCCCH--HHHH----HHHHHHHHHHhcC-CcEEEEechHHhhhH
Confidence 112233 455555543 1111 1222223333444 447888999988654
No 69
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.58 E-value=0.00038 Score=69.55 Aligned_cols=116 Identities=21% Similarity=0.280 Sum_probs=72.4
Q ss_pred cccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcC---C-----CCEEEEEeecC--cchHHHHHHHhcccc
Q psy13480 225 LLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYS---N-----SDVIVYVGCGE--RGNEMAEVLRDFPEL 292 (615)
Q Consensus 225 l~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~---~-----adviV~~~iGE--Rg~Ev~e~~~~f~~l 292 (615)
+-||++.+|-++. +.+|....|.|++|+|||+++.+++... + ..-++|+..-+ +.+.+.++.+.+..
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~- 79 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGL- 79 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhcc-
Confidence 4699999999987 8899999999999999999999997432 1 13577776654 23445555544321
Q ss_pred cccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHH
Q psy13480 293 TIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWA 353 (615)
Q Consensus 293 ~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~A 353 (615)
+ ...+++|-.++...+-. . ..... ..+-+.+.+.+.--++++||++...
T Consensus 80 -~-----~~~~~~~i~~~~~~~~~---~-l~~~l--~~l~~~l~~~~~~~liVIDSis~~~ 128 (235)
T cd01123 80 -D-----PEEVLDNIYVARAYNSD---H-QLQLL--EELEAILIESSRIKLVIVDSVTALF 128 (235)
T ss_pred -C-----hHhHhcCEEEEecCCHH---H-HHHHH--HHHHHHHhhcCCeeEEEEeCcHHHH
Confidence 1 13566775555432211 1 11111 1233344444355689999999654
No 70
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.56 E-value=0.00017 Score=75.84 Aligned_cols=116 Identities=19% Similarity=0.272 Sum_probs=78.3
Q ss_pred ccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcCC--------CCEEEEEeecC--cchHHHHHHHhccc
Q psy13480 224 PLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYSN--------SDVIVYVGCGE--RGNEMAEVLRDFPE 291 (615)
Q Consensus 224 pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~~--------adviV~~~iGE--Rg~Ev~e~~~~f~~ 291 (615)
.+.||.+.+|.++. +-+|....|.|++|+|||+++.+++..+. ..-+||+..-+ +...+.++.+.|.
T Consensus 76 ~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~g- 154 (310)
T TIGR02236 76 KITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARG- 154 (310)
T ss_pred eecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcC-
Confidence 46899999999986 77899999999999999999999975421 23689998887 5667777776652
Q ss_pred ccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcE-EEEeeCchHH
Q psy13480 292 LTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNV-SMMADSTSRW 352 (615)
Q Consensus 292 l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~V-ll~~Ds~tR~ 352 (615)
+.. ...++|-.++...+..+- . ..--.+.+++.+.+..+ ++++||++-+
T Consensus 155 l~~------~~~~~~i~i~~~~~~~~~---~---~lld~l~~~i~~~~~~~~lVVIDSisa~ 204 (310)
T TIGR02236 155 LDP------DEVLKNIYVARAYNSNHQ---M---LLVEKAEDLIKELNNPVKLLIVDSLTSH 204 (310)
T ss_pred CCH------HHHhhceEEEecCCHHHH---H---HHHHHHHHHHHhcCCCceEEEEecchHh
Confidence 110 234555444443332221 1 22234667777655334 8999999854
No 71
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.54 E-value=0.00013 Score=72.93 Aligned_cols=177 Identities=18% Similarity=0.154 Sum_probs=100.8
Q ss_pred ccceeeecccc--ccccCceeeccCCCCCCcchhhHHhh-hcCCC--CEEEEEeecCcchHHHHHHHhcccccccccCcc
Q psy13480 226 LTGQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALS-KYSNS--DVIVYVGCGERGNEMAEVLRDFPELTIEVDGVT 300 (615)
Q Consensus 226 ~TG~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la-~~~~a--dviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~ 300 (615)
-||+.-+|.++ -+-+|..++|.|++|+|||+++.|++ +++.. .-|+|+..-|...++.+-++.|.- . .
T Consensus 2 ~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~-d--~---- 74 (226)
T PF06745_consen 2 PTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGW-D--L---- 74 (226)
T ss_dssp --SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS----H----
T ss_pred CCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCC-c--H----
Confidence 58999999999 78899999999999999999999876 34333 458999999988777777766521 0 0
Q ss_pred ccCcce-EEEEEeCCCCCHH-HHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhh
Q psy13480 301 ESIMKR-TTLVANTSNMPVA-AREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGA 378 (615)
Q Consensus 301 ~~~m~r-tvlvanTsn~p~~-~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s 378 (615)
....++ ...+......... .+...-...-.+.+.+.+.+. -.+++||+|-. .+ . .-|..+..
T Consensus 75 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~-~~vVIDsls~l-~~----------~----~~~~~~r~ 138 (226)
T PF06745_consen 75 EEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKP-DRVVIDSLSAL-LL----------Y----DDPEELRR 138 (226)
T ss_dssp HHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTS-SEEEEETHHHH-TT----------S----SSGGGHHH
T ss_pred HHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCC-CEEEEECHHHH-hh----------c----CCHHHHHH
Confidence 111111 1333333222110 000111233556666677666 57888999833 10 1 11223344
Q ss_pred hHHHHHHhhccccccCCCCCCCceEEEEeecCCCCCCCCchhhhhhc-ccceEEEecHH
Q psy13480 379 RLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLG-IVQVFWGLDKK 436 (615)
Q Consensus 379 ~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~-i~dg~i~Ldr~ 436 (615)
.+-.|+..+.+ .| +|++.+...+.+.-. ........ +.|+-|.|+..
T Consensus 139 ~l~~l~~~l~~---------~~-~t~llt~~~~~~~~~-~~~~~i~~~l~D~vI~L~~~ 186 (226)
T PF06745_consen 139 FLRALIKFLKS---------RG-VTTLLTSEMPSGSED-DGTFGIEHYLADGVIELRYE 186 (226)
T ss_dssp HHHHHHHHHHH---------TT-EEEEEEEEESSSSSS-SSSTSHHHHHSSEEEEEEEE
T ss_pred HHHHHHHHHHH---------CC-CEEEEEEccccCccc-ccccchhhhcccEEEEEEEE
Confidence 45556665533 23 466777765432111 11223333 78999988854
No 72
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.44 E-value=0.00086 Score=68.77 Aligned_cols=126 Identities=21% Similarity=0.120 Sum_probs=85.9
Q ss_pred Cccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhh-cCCCC-EEEEEeecCcchHHHHHHHhcccccccccC
Q psy13480 223 YPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSK-YSNSD-VIVYVGCGERGNEMAEVLRDFPELTIEVDG 298 (615)
Q Consensus 223 ~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~-~~~ad-viV~~~iGERg~Ev~e~~~~f~~l~~~~~g 298 (615)
+.+-||+.-+|-++- +-+|..++|.|++|||||++..|.+. .++.+ -|+|+..-|...++.+....|.--..+.
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~-- 80 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVY-- 80 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHH--
Confidence 356799999999999 88999999999999999999998764 34443 5999999999999999887764211000
Q ss_pred ccccCcceEEEEEeCCCCCHHH--H---HHHHHHHhhHHHHHHhCCCcEEEEeeCchHHH
Q psy13480 299 VTESIMKRTTLVANTSNMPVAA--R---EASIYTGITLSEYFRDMGYNVSMMADSTSRWA 353 (615)
Q Consensus 299 ~~~~~m~rtvlvanTsn~p~~~--R---~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~A 353 (615)
..--+-.++-+.++..+... . .....+.-.|-+.+.+.+ ...+++||+|...
T Consensus 81 --~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~ 137 (260)
T COG0467 81 --IEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELT 137 (260)
T ss_pred --hhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhC-CCEEEEeCCchHh
Confidence 00112233333333333211 1 123346667778888888 5667899999543
No 73
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.39 E-value=0.00055 Score=73.84 Aligned_cols=117 Identities=17% Similarity=0.287 Sum_probs=76.9
Q ss_pred CCccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcCC--------CCEEEEEeecC--cchHHHHHHHhc
Q psy13480 222 NYPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYSN--------SDVIVYVGCGE--RGNEMAEVLRDF 289 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~~--------adviV~~~iGE--Rg~Ev~e~~~~f 289 (615)
...+-||++.+|.++- +-.|.-.-|+|++|||||+|+++++-++. ..-++|+-.-+ +.+.+.+..+.|
T Consensus 105 ~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~ 184 (344)
T PLN03187 105 VVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (344)
T ss_pred CceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHc
Confidence 4568999999999987 66888999999999999999999974321 23688888876 677788877776
Q ss_pred ccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHH
Q psy13480 290 PELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRW 352 (615)
Q Consensus 290 ~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~ 352 (615)
.- + ...++++ +.++... . +......+ ..+.+.+.+.+.+ ||++||++-.
T Consensus 185 g~-----d--~~~~l~~-I~~~~~~-~-~e~~~~~l---~~l~~~i~~~~~~-LvVIDSital 233 (344)
T PLN03187 185 GM-----D--ADAVLDN-IIYARAY-T-YEHQYNLL---LGLAAKMAEEPFR-LLIVDSVIAL 233 (344)
T ss_pred CC-----C--hhhhcCe-EEEecCC-C-HHHHHHHH---HHHHHHHHhcCCC-EEEEeCcHHh
Confidence 31 1 1345666 3332222 2 12111111 2334445554444 6899999855
No 74
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.34 E-value=0.0013 Score=66.18 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=54.0
Q ss_pred CCccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhc-C-CCCEEEEEeecCcchHHHHHHHhc
Q psy13480 222 NYPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKY-S-NSDVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~-~-~adviV~~~iGERg~Ev~e~~~~f 289 (615)
.+.+-||+.-+|.++. +-+|..+.|.|++|+|||+++.+++.. + +..-|+|+..-+..+++.+-.+.|
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHC
Confidence 4568999999999985 779999999999999999999998643 2 334689998887766665555554
No 75
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.29 E-value=0.00099 Score=70.97 Aligned_cols=117 Identities=20% Similarity=0.315 Sum_probs=75.6
Q ss_pred CCccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcC--------CCCEEEEEeecC--cchHHHHHHHhc
Q psy13480 222 NYPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYS--------NSDVIVYVGCGE--RGNEMAEVLRDF 289 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~--------~adviV~~~iGE--Rg~Ev~e~~~~f 289 (615)
...+-||+..+|.++- +-+|.-.-|+|++|+|||+++++++-.+ ...-++|+-.-+ +.+.+.+..+.|
T Consensus 75 ~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 75 VLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERF 154 (313)
T ss_pred CceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 3468899999999976 7789999999999999999999987421 123588887665 466677777666
Q ss_pred ccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHH
Q psy13480 290 PELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRW 352 (615)
Q Consensus 290 ~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~ 352 (615)
.- + ...++++ +.++...+ ...... .-..+.+.+.+.+.+ +|++||++-.
T Consensus 155 g~-----d--~~~~l~~-i~~~~~~~--~e~~~~---~l~~l~~~i~~~~~~-LvVIDSisal 203 (313)
T TIGR02238 155 GV-----D--PDAVLDN-ILYARAYT--SEHQME---LLDYLAAKFSEEPFR-LLIVDSIMAL 203 (313)
T ss_pred CC-----C--hHHhcCc-EEEecCCC--HHHHHH---HHHHHHHHhhccCCC-EEEEEcchHh
Confidence 31 1 1345666 44433222 111111 112344555554444 6999999844
No 76
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.26 E-value=0.0014 Score=65.15 Aligned_cols=53 Identities=32% Similarity=0.471 Sum_probs=42.5
Q ss_pred cccceeeecccc--ccccCceeeccCCCCCCcchhhHHhhhcC-CC-------CEEEEEeecC
Q psy13480 225 LLTGQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALSKYS-NS-------DVIVYVGCGE 277 (615)
Q Consensus 225 l~TG~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la~~~-~a-------dviV~~~iGE 277 (615)
+.||+..+|-++ -+-+|+...|.|++|+|||+++.+++... .. .-++|+..-+
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 469999999988 48899999999999999999999987642 22 3567776543
No 77
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.22 E-value=0.0034 Score=70.69 Aligned_cols=178 Identities=13% Similarity=0.143 Sum_probs=102.9
Q ss_pred CCCccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhc-CC-CCEEEEEeecCcchHHHHHHHhcccccccc
Q psy13480 221 ANYPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKY-SN-SDVIVYVGCGERGNEMAEVLRDFPELTIEV 296 (615)
Q Consensus 221 ~~~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~-~~-adviV~~~iGERg~Ev~e~~~~f~~l~~~~ 296 (615)
..+-+.||+.-+|.++. +-+|....|.|++|+|||+++.+++.. +. -.-++|+..-+...++.+-.+.|- .+.
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g---~~~ 327 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWG---IDL 327 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcC---CCh
Confidence 35568999999999986 889999999999999999999998753 22 235888887777666665555442 111
Q ss_pred cCccccCcc--eEEEE-EeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCC
Q psy13480 297 DGVTESIMK--RTTLV-ANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 373 (615)
Q Consensus 297 ~g~~~~~m~--rtvlv-anTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP 373 (615)
....+ +..++ +++........ ...+.+...+.+.+ ++++||+|-+..+.. +
T Consensus 328 ----~~~~~~g~l~i~~~~~~~~~~~~~------~~~i~~~i~~~~~~-~vVIDslt~l~~~~~---------------~ 381 (509)
T PRK09302 328 ----EKMEEKGLLKIICARPESYGLEDH------LIIIKREIEEFKPS-RVAIDPLSALARGGS---------------L 381 (509)
T ss_pred ----HHHhhcCCceeecCCcccCCHHHH------HHHHHHHHHHcCCC-EEEEcCHHHHHHhCC---------------H
Confidence 11111 11122 22222222221 12333444454555 789999995543210 1
Q ss_pred CchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCCCCCCchhh-hhhcccceEEEecHHH
Q psy13480 374 AYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTS-ATLGIVQVFWGLDKKL 437 (615)
Q Consensus 374 ~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD~s~PV~~-~t~~i~dg~i~Ldr~L 437 (615)
..+...|..|...+.+ -.+|++.|...++..-.++.+. ...++.|+-|.|+..-
T Consensus 382 ~~~~~~l~~l~~~~k~----------~~~t~l~t~~~~~~~g~~~~~~~~~~~l~D~vI~L~~~~ 436 (509)
T PRK09302 382 NEFRQFVIRLTDYLKS----------EEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVE 436 (509)
T ss_pred HHHHHHHHHHHHHHHh----------CCCeEEEEeccccccCCCCCCcCceEEeeeEEEEEEEee
Confidence 1122233334433322 2358888876654322233332 4567889999998643
No 78
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.01 E-value=0.0046 Score=60.91 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=60.0
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecC-cchHHHHHHHhcccccccccCccccCcceEEEEEeCC
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGE-RGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTS 314 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGE-Rg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTs 314 (615)
+-+|+...|.|++|+|||+++.+++... .-.-++|+.+-+ ....+.+..+.+++ ..+++- ++....
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~----------~~~~~i-~~~~~~ 77 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPE----------RALSNF-IVFEVF 77 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChH----------HHhcCE-EEEECC
Confidence 4578999999999999999999987542 223588888764 55555555544421 223453 344332
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHH
Q psy13480 315 NMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEA 355 (615)
Q Consensus 315 n~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeA 355 (615)
+ ...... .--.+++.+.+.+.+ +|++||++.+..+
T Consensus 78 ~--~~~~~~---~~~~l~~~~~~~~~~-lvVIDSis~l~~~ 112 (209)
T TIGR02237 78 D--FDEQGV---AIQKTSKFIDRDSAS-LVVVDSFTALYRL 112 (209)
T ss_pred C--HHHHHH---HHHHHHHHHhhcCcc-EEEEeCcHHHhHH
Confidence 2 122111 122334444444444 6788999976543
No 79
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.97 E-value=0.0029 Score=67.09 Aligned_cols=116 Identities=20% Similarity=0.285 Sum_probs=74.8
Q ss_pred Cccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcCC--------CCEEEEEeecC--cchHHHHHHHhcc
Q psy13480 223 YPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYSN--------SDVIVYVGCGE--RGNEMAEVLRDFP 290 (615)
Q Consensus 223 ~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~~--------adviV~~~iGE--Rg~Ev~e~~~~f~ 290 (615)
..+.||..-+|-++. +-+|....|.|++|+|||+++.+++-.+. ...++|+-+-+ +...+.+..+.|.
T Consensus 82 ~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g 161 (317)
T PRK04301 82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALG 161 (317)
T ss_pred CccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcC
Confidence 357899999999876 77899999999999999999999975421 23689998877 4666777666553
Q ss_pred cccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcE-EEEeeCchHH
Q psy13480 291 ELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNV-SMMADSTSRW 352 (615)
Q Consensus 291 ~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~V-ll~~Ds~tR~ 352 (615)
. ++ ...+++-.++ -..+ ....... --.+.+.+.+ +.++ +|++||++-+
T Consensus 162 ~--~~-----~~~l~~i~~~-~~~~--~~~~~~~---~~~l~~~i~~-~~~~~lvVIDSisa~ 210 (317)
T PRK04301 162 L--DP-----DEVLDNIHVA-RAYN--SDHQMLL---AEKAEELIKE-GENIKLVIVDSLTAH 210 (317)
T ss_pred C--Ch-----HhhhccEEEE-eCCC--HHHHHHH---HHHHHHHHhc-cCceeEEEEECchHH
Confidence 1 11 3456664333 2221 1222111 1233334434 3444 7999999854
No 80
>PRK04328 hypothetical protein; Provisional
Probab=96.97 E-value=0.0027 Score=65.18 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=54.3
Q ss_pred ccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhc-C-CCCEEEEEeecCcchHHHHHHHhc
Q psy13480 224 PLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKY-S-NSDVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 224 pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~-~-~adviV~~~iGERg~Ev~e~~~~f 289 (615)
.+-||+.-+|.++. +-+|..+.|.|++|+|||+++.+++.. . +-.-++|+...|...++.+..+.|
T Consensus 4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQF 73 (249)
T ss_pred eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHc
Confidence 36799999999986 558999999999999999999987643 2 334699999999888877766665
No 81
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.95 E-value=0.0034 Score=62.73 Aligned_cols=55 Identities=31% Similarity=0.414 Sum_probs=44.2
Q ss_pred CCccccceeeecccc--ccccCceeeccCCCCCCcchhhHHhhhcC-CC-CEEEEEeec
Q psy13480 222 NYPLLTGQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALSKYS-NS-DVIVYVGCG 276 (615)
Q Consensus 222 ~~pl~TG~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la~~~-~a-dviV~~~iG 276 (615)
++.+.||+.-+|-++ -+-+|.-..|.|++|+|||+++++++... .. .-++|+-+-
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 457899999999999 57789999999999999999999987532 22 347777554
No 82
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.94 E-value=0.0014 Score=70.21 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=74.5
Q ss_pred Cccccceeeeccccc---cccCceeeccCCCCCCcchhhHHhhhcC-CC-CEEEEEeecCcchHHHHHHHhccccccccc
Q psy13480 223 YPLLTGQRVLDSLFP---CVLGGTTAIPGAFGCGKTVISQALSKYS-NS-DVIVYVGCGERGNEMAEVLRDFPELTIEVD 297 (615)
Q Consensus 223 ~pl~TG~rviD~l~P---i~kGq~~~I~g~~G~GKt~l~~~la~~~-~a-dviV~~~iGERg~Ev~e~~~~f~~l~~~~~ 297 (615)
+.+-||+..+|.++. +-+|....|.|++|+|||+|+.+++... .. ..|+|+.+=+..+. +..+.+- .
T Consensus 34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~--~~a~~lG-----v- 105 (321)
T TIGR02012 34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP--VYARKLG-----V- 105 (321)
T ss_pred ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHH--HHHHHcC-----C-
Confidence 367999999999998 7789999999999999999988765432 22 24677755432222 2333331 0
Q ss_pred CccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCC
Q psy13480 298 GVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 365 (615)
Q Consensus 298 g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE 365 (615)
. +++- +++.. +. .+ .++.+++.+-..+.--++++||++-+.. ..|+.+.+++
T Consensus 106 ----d-~~~l-~v~~p-~~--~e------q~l~~~~~li~~~~~~lIVIDSv~al~~-~~E~e~~~g~ 157 (321)
T TIGR02012 106 ----D-IDNL-LVSQP-DT--GE------QALEIAETLVRSGAVDIIVVDSVAALVP-KAEIEGEMGD 157 (321)
T ss_pred ----C-HHHe-EEecC-CC--HH------HHHHHHHHHhhccCCcEEEEcchhhhcc-chhhcccccc
Confidence 1 2333 33332 21 22 2345666666666667899999996654 3356555443
No 83
>PTZ00035 Rad51 protein; Provisional
Probab=96.93 E-value=0.0025 Score=68.62 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=72.6
Q ss_pred CCccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcC--------CCCEEEEEeecC--cchHHHHHHHhc
Q psy13480 222 NYPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYS--------NSDVIVYVGCGE--RGNEMAEVLRDF 289 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~--------~adviV~~~iGE--Rg~Ev~e~~~~f 289 (615)
...+-||+..+|.++- +-+|....|+|++|+|||+++++++-.+ ...-++|+-.-+ +.+.+.++.+.|
T Consensus 97 ~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~ 176 (337)
T PTZ00035 97 IIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERF 176 (337)
T ss_pred CccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHh
Confidence 4568999999999984 7789999999999999999999987432 233577776543 345566666655
Q ss_pred ccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHH
Q psy13480 290 PELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRW 352 (615)
Q Consensus 290 ~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~ 352 (615)
.- ++ ..++++ +.++...+ + ......+ ..+...+.+ +.=-+|++||++-.
T Consensus 177 g~--~~-----~~~l~n-I~~~~~~~-~-e~~~~~l---~~~~~~l~~-~~~~lvVIDSital 225 (337)
T PTZ00035 177 GL--DP-----EDVLDN-IAYARAYN-H-EHQMQLL---SQAAAKMAE-ERFALLIVDSATAL 225 (337)
T ss_pred CC--Ch-----HhHhhc-eEEEccCC-H-HHHHHHH---HHHHHHhhc-cCccEEEEECcHHh
Confidence 31 11 345666 33333222 1 1211111 123333443 44457999999854
No 84
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.87 E-value=0.0066 Score=67.90 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=44.8
Q ss_pred CCccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhc-CCC-CEEEEEeecCc
Q psy13480 222 NYPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKY-SNS-DVIVYVGCGER 278 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~-~~a-dviV~~~iGER 278 (615)
.+.+.||+.-+|-++. +.+|+.+.|.|++|+|||+|+.+++.. +.. .-++|+..=|.
T Consensus 73 ~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 73 VPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES 133 (454)
T ss_pred cCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence 3468999999999984 899999999999999999999998754 222 23677753343
No 85
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.87 E-value=0.0027 Score=68.49 Aligned_cols=117 Identities=19% Similarity=0.327 Sum_probs=75.3
Q ss_pred Cccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcCC--------CCEEEEEeecC--cchHHHHHHHhcc
Q psy13480 223 YPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYSN--------SDVIVYVGCGE--RGNEMAEVLRDFP 290 (615)
Q Consensus 223 ~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~~--------adviV~~~iGE--Rg~Ev~e~~~~f~ 290 (615)
..+.||+.-+|.++. +-+|.-.-|.|++|+|||+++++++-.+. ..-++|+-.-+ +.+.+.++.+.|.
T Consensus 103 ~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~ 182 (342)
T PLN03186 103 IQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFG 182 (342)
T ss_pred ceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcC
Confidence 458999999999765 67888999999999999999999874321 22588888777 5666777777663
Q ss_pred cccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHH
Q psy13480 291 ELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWA 353 (615)
Q Consensus 291 ~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~A 353 (615)
- + ....+++- .++...| .......+ ..+++.+.+.+. -||++||++-.-
T Consensus 183 ~-----~--~~~~l~~i-~~~~~~~--~e~~~~ll---~~~~~~~~~~~~-~LIVIDSI~alf 231 (342)
T PLN03186 183 L-----N--GADVLENV-AYARAYN--TDHQSELL---LEAASMMAETRF-ALMIVDSATALY 231 (342)
T ss_pred C-----C--hhhhccce-EEEecCC--HHHHHHHH---HHHHHHhhccCC-CEEEEeCcHHHH
Confidence 1 1 13456663 3444332 11211111 123344444333 478999998653
No 86
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.87 E-value=0.0038 Score=64.49 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=43.7
Q ss_pred cccceeeecccc----------------ccccCceeeccCCCCCCcchhhHHhhhc-CCCC-EEEEEeecCcch
Q psy13480 225 LLTGQRVLDSLF----------------PCVLGGTTAIPGAFGCGKTVISQALSKY-SNSD-VIVYVGCGERGN 280 (615)
Q Consensus 225 l~TG~rviD~l~----------------Pi~kGq~~~I~g~~G~GKt~l~~~la~~-~~ad-viV~~~iGERg~ 280 (615)
+-||+.-+|.++ =+-+|....|.|++|+|||+++.|++.+ +..+ -++|+..-+..+
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~ 77 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPAN 77 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCch
Confidence 369999999987 3569999999999999999999998653 3333 577777755443
No 87
>PRK09354 recA recombinase A; Provisional
Probab=96.77 E-value=0.002 Score=69.60 Aligned_cols=120 Identities=16% Similarity=0.203 Sum_probs=77.6
Q ss_pred CCccccceeeeccccc---cccCceeeccCCCCCCcchhhHHhhhc-CCCC-EEEEEeecCcchHHHHHHHhcccccccc
Q psy13480 222 NYPLLTGQRVLDSLFP---CVLGGTTAIPGAFGCGKTVISQALSKY-SNSD-VIVYVGCGERGNEMAEVLRDFPELTIEV 296 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P---i~kGq~~~I~g~~G~GKt~l~~~la~~-~~ad-viV~~~iGERg~Ev~e~~~~f~~l~~~~ 296 (615)
.+.+-||+..+|.++. +-+|...-|+|++|||||+|+.+++.. +..+ .|+|+..=+... . +..+.+- .
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~-~-~~a~~lG-----v 110 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD-P-VYAKKLG-----V 110 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchH-H-HHHHHcC-----C
Confidence 3467999999999998 567888999999999999999987643 2223 578887654333 2 3444431 0
Q ss_pred cCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCC
Q psy13480 297 DGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 365 (615)
Q Consensus 297 ~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE 365 (615)
. +++ ++++.. +. .+ .++.+++.+-..|.--++++||++-+.. .-|+.+.+++
T Consensus 111 -----d-ld~-lli~qp-~~--~E------q~l~i~~~li~s~~~~lIVIDSvaaL~~-~~E~eg~~gd 162 (349)
T PRK09354 111 -----D-IDN-LLVSQP-DT--GE------QALEIADTLVRSGAVDLIVVDSVAALVP-KAEIEGEMGD 162 (349)
T ss_pred -----C-HHH-eEEecC-CC--HH------HHHHHHHHHhhcCCCCEEEEeChhhhcc-hhhhcCCccc
Confidence 1 233 333332 21 22 2355666776677777899999996653 2266655443
No 88
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.73 E-value=0.0036 Score=66.77 Aligned_cols=116 Identities=18% Similarity=0.289 Sum_probs=70.8
Q ss_pred Cccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcCC--------CCEEEEEeecC--cchHHHHHHHhcc
Q psy13480 223 YPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYSN--------SDVIVYVGCGE--RGNEMAEVLRDFP 290 (615)
Q Consensus 223 ~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~~--------adviV~~~iGE--Rg~Ev~e~~~~f~ 290 (615)
..+.||+.-+|.++. +-+|.-..|.|++|+|||+++++++.++. ..-++|+-.-+ +...+.+..+.|.
T Consensus 76 ~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~ 155 (316)
T TIGR02239 76 IQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYG 155 (316)
T ss_pred ceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence 357899999999776 66789999999999999999999875211 12577776655 3444666665552
Q ss_pred cccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHH
Q psy13480 291 ELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRW 352 (615)
Q Consensus 291 ~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~ 352 (615)
- ++ ..++++-.+.... | +......+ -.+.+.+.+.+. -||++||++-.
T Consensus 156 ~--~~-----~~~l~~i~~~~~~-~--~~~~~~~l---~~~~~~~~~~~~-~LvVIDSI~al 203 (316)
T TIGR02239 156 L--NP-----EDVLDNVAYARAY-N--TDHQLQLL---QQAAAMMSESRF-ALLIVDSATAL 203 (316)
T ss_pred C--Ch-----HHhhccEEEEecC-C--hHHHHHHH---HHHHHhhccCCc-cEEEEECcHHH
Confidence 1 11 3455654333322 2 11211111 122334444444 47899999854
No 89
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.68 E-value=0.002 Score=69.15 Aligned_cols=118 Identities=14% Similarity=0.205 Sum_probs=76.1
Q ss_pred CCccccceeeeccccc---cccCceeeccCCCCCCcchhhHHhhhcC-C-CCEEEEEeecCcchHHHHHHHhcccccccc
Q psy13480 222 NYPLLTGQRVLDSLFP---CVLGGTTAIPGAFGCGKTVISQALSKYS-N-SDVIVYVGCGERGNEMAEVLRDFPELTIEV 296 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P---i~kGq~~~I~g~~G~GKt~l~~~la~~~-~-adviV~~~iGERg~Ev~e~~~~f~~l~~~~ 296 (615)
.+.+-||+..+|.++. +-+|.-.-|+|++|+|||+|+.+++... . -..|+|+-.=+ .-+. +..+.+- .
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~-~~~~-~~a~~lG---v-- 105 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH-ALDP-VYAKKLG---V-- 105 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc-cHHH-HHHHHcC---C--
Confidence 3468999999999998 6678899999999999999999876432 2 23577776533 3332 3344331 0
Q ss_pred cCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhc
Q psy13480 297 DGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRL 363 (615)
Q Consensus 297 ~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~l 363 (615)
. +++ ++++...+ . --++.+++.+...+.-.++++||++-+.. ..|+.+.+
T Consensus 106 -----d-~~~-l~v~~p~~---~------eq~l~i~~~li~s~~~~lIVIDSvaal~~-~~E~~~~~ 155 (325)
T cd00983 106 -----D-LDN-LLISQPDT---G------EQALEIADSLVRSGAVDLIVVDSVAALVP-KAEIEGEM 155 (325)
T ss_pred -----C-HHH-heecCCCC---H------HHHHHHHHHHHhccCCCEEEEcchHhhcc-cccccccc
Confidence 1 233 34444332 1 22455667776677777899999996653 12555444
No 90
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.67 E-value=0.018 Score=62.97 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=44.4
Q ss_pred CCccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcC-CC-CEEEEEeecC
Q psy13480 222 NYPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYS-NS-DVIVYVGCGE 277 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~-~a-dviV~~~iGE 277 (615)
.+.+.||+.-+|-++. +.+|..+.|.|++|+|||+|+.+++... .. .-++|+..-|
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 4578999999999985 8899999999999999999999987642 22 2466665433
No 91
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.53 E-value=0.0047 Score=67.54 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=58.0
Q ss_pred eeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHH
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~ 322 (615)
.+.+.||+|||||||..-||+..++++.-+-++--.-.|+.+++++
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~---------------------------------- 95 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEE---------------------------------- 95 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHH----------------------------------
Confidence 4557999999999999999999888865555554444455554433
Q ss_pred HHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHH
Q psy13480 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREIS 360 (615)
Q Consensus 323 ~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs 360 (615)
|+.++..|+.++|++|-+.|+-.++.+.=
T Consensus 96 ---------a~~~~~~gr~tiLflDEIHRfnK~QQD~l 124 (436)
T COG2256 96 ---------ARKNRLLGRRTILFLDEIHRFNKAQQDAL 124 (436)
T ss_pred ---------HHHHHhcCCceEEEEehhhhcChhhhhhh
Confidence 55667779999999999999999998753
No 92
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.52 E-value=0.029 Score=57.08 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=38.2
Q ss_pred cccCceeeccCCCCCCcchhhHHh-hhcCCC-CEEEEEeecCcchHHHHHHHhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQAL-SKYSNS-DVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~l-a~~~~a-dviV~~~iGERg~Ev~e~~~~f 289 (615)
+-+|...+|.|++|||||+++.++ +..... --++|+...|...+..+....|
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSL 74 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHh
Confidence 567999999999999999996554 333222 3578888888777766665544
No 93
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.47 E-value=0.023 Score=63.92 Aligned_cols=191 Identities=13% Similarity=0.127 Sum_probs=110.0
Q ss_pred CCCCccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcC-C-CCEEEEEeecCcchHHHHHHHhccccccc
Q psy13480 220 PANYPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYS-N-SDVIVYVGCGERGNEMAEVLRDFPELTIE 295 (615)
Q Consensus 220 ~~~~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~-~-adviV~~~iGERg~Ev~e~~~~f~~l~~~ 295 (615)
+..+.+-||+.-+|.++- +.+|..+.|.|++|+|||+|+.|++.+. . -.-|+|+..-|...++..=.+.|- .+
T Consensus 240 ~~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg---~~ 316 (484)
T TIGR02655 240 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWG---ID 316 (484)
T ss_pred ccccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcC---CC
Confidence 356679999999999884 7899999999999999999999987642 2 346999998887777666655541 11
Q ss_pred ccCccccCcce--EEEEE-eCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCC
Q psy13480 296 VDGVTESIMKR--TTLVA-NTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGY 372 (615)
Q Consensus 296 ~~g~~~~~m~r--tvlva-nTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGY 372 (615)
. .+..++ -.++. ++....+.. ..-.+-+...+.+.+ .+++||++-+..++.. +
T Consensus 317 ~----~~~~~~g~l~~~~~~p~~~~~~~------~~~~i~~~i~~~~~~-~vvIDsi~~~~~~~~~----------~--- 372 (484)
T TIGR02655 317 F----EEMEQQGLLKIICAYPESAGLED------HLQIIKSEIADFKPA-RIAIDSLSALARGVSN----------N--- 372 (484)
T ss_pred h----HHHhhCCcEEEEEcccccCChHH------HHHHHHHHHHHcCCC-EEEEcCHHHHHHhcCH----------H---
Confidence 1 122222 22222 222222211 222233333455655 5789999966544311 1
Q ss_pred CCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCC--CCCCCchhh-hhhcccceEEEecHHHHhCCCCCCCccC
Q psy13480 373 PAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPG--GDFSDPVTS-ATLGIVQVFWGLDKKLAQRKHFPSINWL 449 (615)
Q Consensus 373 P~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~g--gD~s~PV~~-~t~~i~dg~i~Ldr~La~~g~yPAId~l 449 (615)
..-..+.+|..-+. .-.||.+.+...++ |. .+++. ..-++.|+-|.|...-......-+|.++
T Consensus 373 --~~r~~~~~l~~~lk----------~~~it~~~t~~~~~~~~~--~~~~~~~~s~l~D~ii~l~~~e~~g~~~r~i~V~ 438 (484)
T TIGR02655 373 --AFRQFVIGVTGYAK----------QEEITGFFTNTSDQFMGS--HSITDSHISTITDTILMLQYVEIRGEMSRAINVF 438 (484)
T ss_pred --HHHHHHHHHHHHHh----------hCCCeEEEeecccccccC--CccCCCCeeEeeeEEEEEEEEecCCEEEEEEEEE
Confidence 11122223333222 34578888877665 33 23332 3456788888886544433333345444
Q ss_pred cc
Q psy13480 450 IS 451 (615)
Q Consensus 450 ~S 451 (615)
++
T Consensus 439 K~ 440 (484)
T TIGR02655 439 KM 440 (484)
T ss_pred Ec
Confidence 44
No 94
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.35 E-value=0.006 Score=62.37 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=43.0
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEee-cCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHH
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGC-GERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~i-GERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~ 322 (615)
+.+.||+|+|||||++-||+..++++.+.-+. =++..++...+.
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~----------------------------------- 97 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILT----------------------------------- 97 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHH-----------------------------------
T ss_pred EEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHH-----------------------------------
Confidence 56899999999999999999988876554442 133333333331
Q ss_pred HHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHH
Q psy13480 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREIS 360 (615)
Q Consensus 323 ~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs 360 (615)
..+..-+|++|.+.||-.++.|+=
T Consensus 98 --------------~l~~~~ILFIDEIHRlnk~~qe~L 121 (233)
T PF05496_consen 98 --------------NLKEGDILFIDEIHRLNKAQQEIL 121 (233)
T ss_dssp --------------T--TT-EEEECTCCC--HHHHHHH
T ss_pred --------------hcCCCcEEEEechhhccHHHHHHH
Confidence 223444677899999999998864
No 95
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.30 E-value=0.015 Score=58.20 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=48.2
Q ss_pred ceeeecccc--ccccCceeeccCCCCCCcchhhHHhhhc-CCCC-EEEEEeecCcchHHHHHHHhc
Q psy13480 228 GQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALSKY-SNSD-VIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 228 G~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la~~-~~ad-viV~~~iGERg~Ev~e~~~~f 289 (615)
|+.-+|-++ -+-+|..+.|.|++|+|||+++.+++.. ...+ -|+|+..-+..+++.+-.+.|
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHc
Confidence 556677766 3558999999999999999999988753 2334 589999998887777777665
No 96
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.29 E-value=0.0038 Score=63.40 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=52.4
Q ss_pred cccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhc-CC-CCEEEEEeecCcchHHHHHHHhc
Q psy13480 225 LLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKY-SN-SDVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 225 l~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~-~~-adviV~~~iGERg~Ev~e~~~~f 289 (615)
+.||+.-+|-++. +-+|..+.|.|++|+|||+++.+++.. .. -.-++|+...|...++.+-.+.|
T Consensus 3 i~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 3 VKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQF 71 (237)
T ss_pred cccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHh
Confidence 5799999999774 779999999999999999999987643 23 34699999999777766655554
No 97
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.20 E-value=0.037 Score=61.84 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=46.3
Q ss_pred CCccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcC-CCC-EEEEEeecCcchHH
Q psy13480 222 NYPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYS-NSD-VIVYVGCGERGNEM 282 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~-~ad-viV~~~iGERg~Ev 282 (615)
.+.+-||+.-+|-++. +.+|....|.|++|+|||+|+.+++... ... -++|+..=|..+.+
T Consensus 59 ~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 59 EPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred CCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 3468999999999985 7889999999999999999999987642 222 46777644433333
No 98
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.08 E-value=0.0086 Score=70.81 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=72.6
Q ss_pred Cccccceeeeccccc---cccCceeeccCCCCCCcchhhHHhhhc-CCC-CEEEEEeecCcchHHHHHHHhccccccccc
Q psy13480 223 YPLLTGQRVLDSLFP---CVLGGTTAIPGAFGCGKTVISQALSKY-SNS-DVIVYVGCGERGNEMAEVLRDFPELTIEVD 297 (615)
Q Consensus 223 ~pl~TG~rviD~l~P---i~kGq~~~I~g~~G~GKt~l~~~la~~-~~a-dviV~~~iGERg~Ev~e~~~~f~~l~~~~~ 297 (615)
..+-||+..+|.++. +-+|....|+|++|+|||+|+++++.. +.. ..|+|+-.-+.-+ .+..+.+- .
T Consensus 39 ~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~--~~~A~~lG-----v- 110 (790)
T PRK09519 39 SVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD--PDYAKKLG-----V- 110 (790)
T ss_pred ceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchh--HHHHHHcC-----C-
Confidence 367899999999997 678999999999999999999886542 222 3577776555444 23444431 1
Q ss_pred CccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhc
Q psy13480 298 GVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRL 363 (615)
Q Consensus 298 g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~l 363 (615)
. +++ ++++...+. +. ++.+++.+-..+.=-+||+||++-+.. -.|+++++
T Consensus 111 ----D-l~~-llv~~~~~~---E~------~l~~i~~lv~~~~~~LVVIDSI~aL~~-r~E~~g~~ 160 (790)
T PRK09519 111 ----D-TDS-LLVSQPDTG---EQ------ALEIADMLIRSGALDIVVIDSVAALVP-RAELEGEM 160 (790)
T ss_pred ----C-hhH-eEEecCCCH---HH------HHHHHHHHhhcCCCeEEEEcchhhhcc-hhhccCCC
Confidence 1 122 234443322 22 344455555556666799999985442 23444443
No 99
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.0035 Score=64.51 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=30.9
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.=|.|.+|++.||.|++|||||||+..|+-+...+
T Consensus 26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~ 60 (252)
T COG1124 26 VSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60 (252)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC
Confidence 34789999999999999999999999999876555
No 100
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.99 E-value=0.0076 Score=60.29 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=48.9
Q ss_pred cccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhc-CC-CCEEEEEeecCcchHHHHHHHh
Q psy13480 225 LLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKY-SN-SDVIVYVGCGERGNEMAEVLRD 288 (615)
Q Consensus 225 l~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~-~~-adviV~~~iGERg~Ev~e~~~~ 288 (615)
+-||+.-+|.++. +-+|..++|.|++|+|||+++.+++.. .. -.-++|+...+..+++.+..+.
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~ 69 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQ 69 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHH
Confidence 4699999999875 779999999999999999999987642 22 2357888877766665544433
No 101
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.86 E-value=0.028 Score=58.24 Aligned_cols=119 Identities=19% Similarity=0.265 Sum_probs=72.7
Q ss_pred Cccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcC--------CCCEEEEEeecC--cchHHHHHHHhcc
Q psy13480 223 YPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYS--------NSDVIVYVGCGE--RGNEMAEVLRDFP 290 (615)
Q Consensus 223 ~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~--------~adviV~~~iGE--Rg~Ev~e~~~~f~ 290 (615)
..|-||.+.||.++- |-.|.-.=|.|++|+|||.|+.+|+-.+ ...-+||+-+-- +.+-+.++.+.+.
T Consensus 18 ~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~ 97 (256)
T PF08423_consen 18 SRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFG 97 (256)
T ss_dssp -EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTT
T ss_pred CeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccc
Confidence 457999999999983 7788888999999999999999987432 123578885543 3445555555552
Q ss_pred cccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHH
Q psy13480 291 ELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEA 355 (615)
Q Consensus 291 ~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeA 355 (615)
+. ...+++|..++ ...|. ........ .+...+.+. +==||++||++-.-+.
T Consensus 98 -~~------~~~~l~~I~v~-~~~~~--~~l~~~L~---~l~~~l~~~-~ikLIVIDSIaalfr~ 148 (256)
T PF08423_consen 98 -LD------PEEILDNIFVI-RVFDL--EELLELLE---QLPKLLSES-KIKLIVIDSIAALFRS 148 (256)
T ss_dssp -S-------HHHHHHTEEEE-E-SSH--HHHHHHHH---HHHHHHHHS-CEEEEEEETSSHHHHH
T ss_pred -cc------cchhhhceeee-ecCCH--HHHHHHHH---HHHhhcccc-ceEEEEecchHHHHHH
Confidence 11 14567775543 33332 22222222 234455554 3447999999976543
No 102
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.0061 Score=62.88 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=30.2
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.=+.+.+|+.++|.|++|||||||+..||-....+
T Consensus 22 i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 22 INLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred ceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 44689999999999999999999999998764443
No 103
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.51 E-value=0.057 Score=52.67 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=56.6
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCc-chHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHH
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGER-GNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGER-g~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~ 322 (615)
..|.||+|+|||++..+++..... -++|++..+. +.||.+-++...+.. + .+=++ + ..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~-~~~y~at~~~~d~em~~rI~~H~~~R----~-----~~w~t-~----E~------ 60 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGG-PVTYIATAEAFDDEMAERIARHRKRR----P-----AHWRT-I----ET------ 60 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC-CeEEEEccCcCCHHHHHHHHHHHHhC----C-----CCceE-e----ec------
Confidence 468999999999999999876333 4667666654 678888887754311 1 01111 1 11
Q ss_pred HHHHHHhhHHHHHHhC-CCcEEEEeeCchHHHHHHH
Q psy13480 323 ASIYTGITLSEYFRDM-GYNVSMMADSTSRWAEALR 357 (615)
Q Consensus 323 ~s~~tg~tiAEyfrd~-G~~Vll~~Ds~tR~AeAlR 357 (615)
..-+++.+.+. +.+ .+++|++|-|...+.
T Consensus 61 -----~~~l~~~l~~~~~~~-~VLIDclt~~~~n~l 90 (169)
T cd00544 61 -----PRDLVSALKELDPGD-VVLIDCLTLWVTNLL 90 (169)
T ss_pred -----HHHHHHHHHhcCCCC-EEEEEcHhHHHHHhC
Confidence 23344445443 545 689999999998876
No 104
>PF05729 NACHT: NACHT domain
Probab=95.42 E-value=0.014 Score=53.91 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=28.2
Q ss_pred eeeccCCCCCCcchhhHHhhh-cCC-------CCEEEEEeecCcchH
Q psy13480 243 TTAIPGAFGCGKTVISQALSK-YSN-------SDVIVYVGCGERGNE 281 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~-~~~-------adviV~~~iGERg~E 281 (615)
.+.|.|++|+|||++++.++. +.. ..+++|..++.....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 467999999999999998874 211 236777777765553
No 105
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.39 E-value=0.12 Score=52.72 Aligned_cols=159 Identities=20% Similarity=0.293 Sum_probs=99.5
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc-CCCCE-EEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEe----C
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY-SNSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVAN----T 313 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~-~~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvan----T 313 (615)
-|+-+.|.|+.|+|||+|+|+++-. .+.+. +-|+..-. .+.+|+..+..|..+.. .-.+.-..+++. .
T Consensus 27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~---T~refi~qm~sl~ydv~---~~~l~G~l~~~~~~~~~ 100 (235)
T COG2874 27 VGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL---TVREFIKQMESLSYDVS---DFLLSGRLLFFPVNLEP 100 (235)
T ss_pred cCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEech---hHHHHHHHHHhcCCCch---HHHhcceeEEEEecccc
Confidence 3778899999999999999999863 45555 44454433 56777776655554443 234444455555 3
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhcccccc
Q psy13480 314 SNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL 393 (615)
Q Consensus 314 sn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~ 393 (615)
++.-.-.+..--- -+.|.-+-.-+|| +++||+|-+|- ++ =.-..=.|++.+.++..+
T Consensus 101 ~~~~~~~~~~~L~---~l~~~~k~~~~dV-iIIDSls~~~~--~~-----------------~~~~vl~fm~~~r~l~d~ 157 (235)
T COG2874 101 VNWGRRSARKLLD---LLLEFIKRWEKDV-IIIDSLSAFAT--YD-----------------SEDAVLNFMTFLRKLSDL 157 (235)
T ss_pred cccChHHHHHHHH---HHHhhHHhhcCCE-EEEecccHHhh--cc-----------------cHHHHHHHHHHHHHHHhC
Confidence 4443333222211 2334444445666 56799984331 10 012455788888876433
Q ss_pred CCCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHH
Q psy13480 394 GNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436 (615)
Q Consensus 394 ~~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~ 436 (615)
| - |++-||-|. -+++-+..-.+++.|+++-|...
T Consensus 158 g------K-vIilTvhp~--~l~e~~~~rirs~~d~~l~L~~~ 191 (235)
T COG2874 158 G------K-VIILTVHPS--ALDEDVLTRIRSACDVYLRLRLE 191 (235)
T ss_pred C------C-EEEEEeChh--hcCHHHHHHHHHhhheeEEEEhh
Confidence 2 2 677777765 58888888999999999999854
No 106
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.39 E-value=0.0088 Score=64.80 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=33.6
Q ss_pred eeeec-cccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 229 QRVLD-SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 229 ~rviD-~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
..++| .=+.|.+|.-+++.||+|||||||+.+||-+...|
T Consensus 18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~ 58 (352)
T COG3842 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS 58 (352)
T ss_pred eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34444 56789999999999999999999999999876555
No 107
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.36 E-value=0.071 Score=47.13 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=28.4
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC---CCCEEEEEeecCc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS---NSDVIVYVGCGER 278 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~---~adviV~~~iGER 278 (615)
.+.-+.|.|++|+|||+++..+++.. +.. ++++.|.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~-v~~~~~~~~ 58 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAP-FLYLNASDL 58 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCC-eEEEehhhh
Confidence 45678999999999999999998764 332 556655543
No 108
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.31 E-value=0.012 Score=57.69 Aligned_cols=37 Identities=27% Similarity=0.171 Sum_probs=31.2
Q ss_pred eeeccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 230 RVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 230 rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.+++-.+.+.+|..++|.|++|+|||||+..|+....
T Consensus 14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred EEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3444457899999999999999999999999987543
No 109
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.27 E-value=0.016 Score=65.15 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=55.3
Q ss_pred ccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhh-cC-C-CCEEEEEeecCcchHHHHHHHhc
Q psy13480 224 PLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSK-YS-N-SDVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 224 pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~-~~-~-adviV~~~iGERg~Ev~e~~~~f 289 (615)
.+-||+.-+|.++. +-+|...+|.|++|||||+++.+++- .+ + -.-|+|+..-|+..++.+-.+.|
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSF 72 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHc
Confidence 35799999999987 77999999999999999999999853 22 2 24699999999888888877776
No 110
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.24 E-value=0.014 Score=57.62 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=29.7
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
-|.+-+|.+.+|.||+|||||||+.++|.--.-|
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~ 56 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT 56 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccCCC
Confidence 3678899999999999999999999999865554
No 111
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.24 E-value=0.048 Score=60.06 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=36.1
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f 289 (615)
..+.+.|++|||||++++.+++..+.+.+.+-+......++.++++.+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~ 84 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEA 84 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHH
Confidence 367789999999999999999988887665555444445566666554
No 112
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.23 E-value=0.011 Score=57.54 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=28.5
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46889999999999999999999999987543
No 113
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.21 E-value=0.018 Score=56.67 Aligned_cols=117 Identities=20% Similarity=0.243 Sum_probs=62.4
Q ss_pred eeeccCCCCCCcchhhHHhhhcC-----CCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS-----NSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMP 317 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~-----~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p 317 (615)
++.|.|++|+||||++..||+.- +.+...-.++-++ .|+......+ |++.-+|-.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~-t~lg~~~k~~--------------i~~g~lv~d----- 61 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER-TELGEEIKKY--------------IDKGELVPD----- 61 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC-ChHHHHHHHH--------------HHcCCccch-----
Confidence 67899999999999999999751 2223333333333 3333333332 111111110
Q ss_pred HHHHHHHHHHHhhHHHHHHh-CCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhh
Q psy13480 318 VAAREASIYTGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERA 387 (615)
Q Consensus 318 ~~~R~~s~~tg~tiAEyfrd-~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERA 387 (615)
-.+-.++-+.+.. ..+. .+|+|...||..-.|-+-..|.+.....-+-..+--....+++|.
T Consensus 62 -------~i~~~~v~~rl~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~ 124 (178)
T COG0563 62 -------EIVNGLVKERLDEADCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERL 124 (178)
T ss_pred -------HHHHHHHHHHHHhhcccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHH
Confidence 0334455555554 3445 788888888776666655554443333333333333334556654
No 114
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.13 E-value=0.011 Score=60.32 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=30.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|..++|.||+|||||||++.|+--...+
T Consensus 23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt 58 (226)
T COG1136 23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT 58 (226)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 455789999999999999999999999987654334
No 115
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.99 E-value=0.014 Score=57.63 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=30.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
|.=|.+.+|+.++|.|++|+|||||++.|+.....
T Consensus 19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 33468889999999999999999999999986443
No 116
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.98 E-value=0.11 Score=50.54 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=29.9
Q ss_pred eeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcch
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGN 280 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~ 280 (615)
.+.|.|++|+|||+++..++...+.. ++|++.|.-..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~-~~~iat~~~~~ 39 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQ-VLYIATAQPFD 39 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCC-cEeCcCCCCCh
Confidence 57899999999999999998764443 67888887543
No 117
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.93 E-value=0.015 Score=58.39 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=28.7
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37889999999999999999999999997643
No 118
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.90 E-value=0.05 Score=48.85 Aligned_cols=48 Identities=23% Similarity=0.440 Sum_probs=31.0
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC--------CCCEEEEEeecCcchHHHHHHHhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS--------NSDVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~--------~adviV~~~iGERg~Ev~e~~~~f 289 (615)
+++.+.|.|++|+|||+++..++++. +.+ ++++-|.... ....+..++
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~i 58 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPD-VIYVNCPSSR-TPRDFAQEI 58 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEE-EEEEEHHHHS-SHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCc-EEEEEeCCCC-CHHHHHHHH
Confidence 35667899999999999999998864 333 5677777655 444555443
No 119
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.89 E-value=0.019 Score=64.78 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=56.6
Q ss_pred Cccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhc-CCC--CEEEEEeecCcchHHHHHHHhc
Q psy13480 223 YPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKY-SNS--DVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 223 ~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~-~~a--dviV~~~iGERg~Ev~e~~~~f 289 (615)
+.+-||+.-+|.++- +-+|..+.|.|++|+|||+++.+++.. +.. .-|+|+.+-|..+++.+-...|
T Consensus 11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHc
Confidence 356899999999974 889999999999999999999998753 322 4699999999888888887776
No 120
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.016 Score=56.02 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=28.4
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
=|.+.+|+.++|.|++|+|||||+..|+..-.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36889999999999999999999999987533
No 121
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.86 E-value=0.016 Score=57.57 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=28.4
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34688999999999999999999999998753
No 122
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.85 E-value=0.016 Score=58.45 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=28.5
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34788999999999999999999999998753
No 123
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.80 E-value=0.016 Score=57.24 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=27.9
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 19 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 19 SFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3678899999999999999999999998754
No 124
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.78 E-value=0.017 Score=56.92 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=27.8
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 20 SLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3678899999999999999999999998753
No 125
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.76 E-value=0.017 Score=56.89 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=28.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 334678899999999999999999999998753
No 126
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.75 E-value=0.017 Score=58.01 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=28.4
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 20 VSLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34688999999999999999999999998753
No 127
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.72 E-value=0.018 Score=57.10 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=28.1
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3688899999999999999999999998764
No 128
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.72 E-value=0.017 Score=57.29 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=27.8
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3468899999999999999999999999865
No 129
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.018 Score=57.45 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=29.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 21 DINFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 344788999999999999999999999998754
No 130
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.67 E-value=0.019 Score=56.94 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=28.5
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 22 LNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999999999998754
No 131
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.65 E-value=0.02 Score=56.50 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=28.3
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+..+|.|++|+|||||+..|+...
T Consensus 19 ~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 19 IDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999998753
No 132
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.64 E-value=0.02 Score=57.02 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=29.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4457889999999999999999999999987533
No 133
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.64 E-value=0.02 Score=56.97 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=28.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334688899999999999999999999998753
No 134
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.02 Score=55.16 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=28.5
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46788999999999999999999999998643
No 135
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.62 E-value=0.29 Score=46.80 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=32.2
Q ss_pred eeccCCCCCCcchhhHHhhhc-CCCC-EEEEEeecCcchHHHHHHHh
Q psy13480 244 TAIPGAFGCGKTVISQALSKY-SNSD-VIVYVGCGERGNEMAEVLRD 288 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~-~~ad-viV~~~iGERg~Ev~e~~~~ 288 (615)
+++.|++|+|||+++..++.. ...+ -++++.|.-+..+..+.+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~ 49 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRV 49 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHH
Confidence 568899999999999988763 3333 36777777766666555543
No 136
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.60 E-value=0.02 Score=56.18 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=28.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 16 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 16 DLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344678899999999999999999999998753
No 137
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.56 E-value=0.021 Score=56.33 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=28.1
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.-|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999999999865
No 138
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.56 E-value=0.021 Score=56.44 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=28.1
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3688999999999999999999999998764
No 139
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.55 E-value=0.021 Score=56.48 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=28.1
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4688999999999999999999999998753
No 140
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.55 E-value=0.021 Score=55.44 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=29.0
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.=|.+.+|++.+|.|++|+|||||+..|+....
T Consensus 19 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346788999999999999999999999997643
No 141
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.54 E-value=0.021 Score=57.10 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=29.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445789999999999999999999999998753
No 142
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.54 E-value=0.022 Score=56.03 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445688999999999999999999999998753
No 143
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.53 E-value=0.021 Score=57.54 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=28.0
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3678899999999999999999999998753
No 144
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.53 E-value=0.022 Score=57.55 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.2
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4788999999999999999999999998754
No 145
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.52 E-value=0.015 Score=52.98 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=28.2
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
+.+.+|+.++|.|+.|+|||||+..|+.....
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred EEEcCCCEEEEEccCCCccccceeeecccccc
Confidence 56889999999999999999999999876543
No 146
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.021 Score=57.59 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=28.6
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+..+|.|++|+|||||+..|+...
T Consensus 21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 21 VSLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34688999999999999999999999998764
No 147
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.50 E-value=0.018 Score=56.41 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=25.9
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhh
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALS 262 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la 262 (615)
=|.+.+|.+++|.|++|+|||||+..+.
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999999999885
No 148
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.50 E-value=0.021 Score=57.29 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=27.8
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.++|.|++|+|||||++.|+...
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4688999999999999999999999998653
No 149
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.50 E-value=0.018 Score=62.11 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=30.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
|.=+.|..|..+.+.||+|||||||+.+||---+.
T Consensus 21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34568999999999999999999999999976443
No 150
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.50 E-value=0.022 Score=54.47 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=29.0
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
=|.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 367899999999999999999999999876433
No 151
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.48 E-value=0.018 Score=52.31 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=25.2
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhh
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALS 262 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la 262 (615)
-|-+..|+.++|.|++|+|||||+..+.
T Consensus 9 sl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 9 LVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3567889999999999999999999887
No 152
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.48 E-value=0.022 Score=56.95 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=28.0
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4788999999999999999999999998753
No 153
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.45 E-value=0.025 Score=55.82 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=30.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|+.|+|||||++.|+...
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 667899999999999999999999999998754
No 154
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.45 E-value=0.023 Score=57.16 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=29.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 18 GVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444789999999999999999999999998754
No 155
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.44 E-value=0.041 Score=56.70 Aligned_cols=56 Identities=27% Similarity=0.433 Sum_probs=42.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC--EEEEEe---ecCcchHHHHHHHh
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD--VIVYVG---CGERGNEMAEVLRD 288 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad--viV~~~---iGERg~Ev~e~~~~ 288 (615)
|.-|-|-+|+.++|.|++|+|||||+.+|..-.+.. -+.+-+ ++-++.|++.+...
T Consensus 22 ~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 22 DVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 344689999999999999999999999998754332 244444 67777788777754
No 156
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.44 E-value=0.023 Score=56.41 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=28.5
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 23 i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34688999999999999999999999998754
No 157
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.43 E-value=0.019 Score=57.26 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=28.4
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 19 ISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34688999999999999999999999998654
No 158
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.43 E-value=0.023 Score=56.19 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.-|.|.+|+.++|.|++|+|||||+..|+...
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445688999999999999999999999998753
No 159
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.42 E-value=0.023 Score=57.46 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=28.1
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+..+|.|++|+|||||++.|+...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4688999999999999999999999998753
No 160
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.38 E-value=0.024 Score=55.72 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=29.0
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 24 ~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 24 INLEVPKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 346889999999999999999999999987643
No 161
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.36 E-value=0.025 Score=54.61 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=29.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|+.|+|||||+..|+....
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4456788999999999999999999999998643
No 162
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.36 E-value=0.024 Score=56.48 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=28.0
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999998753
No 163
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.35 E-value=0.021 Score=58.08 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=27.3
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 25 DLDFNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 467899999999999999999999999864
No 164
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.32 E-value=0.021 Score=59.44 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=28.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+-+|.-.+|.||.|||||||+..|++.
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cceEEecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 44578999999999999999999999999875
No 165
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.31 E-value=0.022 Score=57.82 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=28.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 21 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 334688899999999999999999999998753
No 166
>PRK14974 cell division protein FtsY; Provisional
Probab=94.31 E-value=0.11 Score=56.02 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=26.9
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCC-CC-EEEEEeec
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSN-SD-VIVYVGCG 276 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~-ad-viV~~~iG 276 (615)
.++..+++.|++|+||||++..+|.+-. .. -++++.+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4567899999999999999888876521 22 24445554
No 167
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.28 E-value=0.028 Score=60.63 Aligned_cols=36 Identities=33% Similarity=0.367 Sum_probs=31.9
Q ss_pred eccccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 232 LDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 232 iD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
+|.=|.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p 50 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP 50 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 477889999999999999999999999999976443
No 168
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.28 E-value=0.026 Score=55.65 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=28.2
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 19 ~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 19 ISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34678899999999999999999999998653
No 169
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.27 E-value=0.05 Score=55.73 Aligned_cols=66 Identities=18% Similarity=0.070 Sum_probs=50.4
Q ss_pred CCccccceeeecccc-ccccCceeeccCCCCCCcchhhHHhhhc-CCC-C-EEEEEeecCcchHHHHHHH
Q psy13480 222 NYPLLTGQRVLDSLF-PCVLGGTTAIPGAFGCGKTVISQALSKY-SNS-D-VIVYVGCGERGNEMAEVLR 287 (615)
Q Consensus 222 ~~pl~TG~rviD~l~-Pi~kGq~~~I~g~~G~GKt~l~~~la~~-~~a-d-viV~~~iGERg~Ev~e~~~ 287 (615)
++-+-||+..+|-++ -+.+|..+.|.|++|+|||+++.+++.+ +.. + -++|+.+=+...++...+.
T Consensus 10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~ 79 (271)
T cd01122 10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLL 79 (271)
T ss_pred ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHH
Confidence 346789999999975 4778999999999999999999988754 222 3 4677777676667766553
No 170
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.27 E-value=0.023 Score=57.95 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=30.8
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEe
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVG 274 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~ 274 (615)
+.+.+|+.++|.||+|||||||+..|..-. +..-|.+-+
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g 63 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence 578999999999999999999999987643 333344444
No 171
>PF13173 AAA_14: AAA domain
Probab=94.27 E-value=0.07 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.8
Q ss_pred CceeeccCCCCCCcchhhHHhhhc
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+..+.|.|+.||||||++.++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~ 25 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKD 25 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999998865
No 172
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.26 E-value=0.027 Score=54.54 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=29.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 17 ~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3346788999999999999999999999987643
No 173
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.25 E-value=0.022 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.6
Q ss_pred eeeccCCCCCCcchhhHHhhhcC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+++|.|++||||||+++.|++.-
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999854
No 174
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.24 E-value=0.023 Score=57.72 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=29.4
Q ss_pred eccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 232 LDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 232 iD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 355678999999999999999999999999864
No 175
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.22 E-value=0.027 Score=55.82 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=27.4
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=|.+.+|+.++|.|++|+|||||++.|+..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999865
No 176
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.22 E-value=0.03 Score=54.83 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=30.0
Q ss_pred eeccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 231 VLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 231 viD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+.|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445678999999999999999999999998753
No 177
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.22 E-value=0.027 Score=56.23 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=29.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|+.|+|||||+..|+....
T Consensus 28 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 28 GVELVVKRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3447889999999999999999999999997643
No 178
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.20 E-value=0.027 Score=56.69 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=27.9
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999999998764
No 179
>PRK10908 cell division protein FtsE; Provisional
Probab=94.20 E-value=0.028 Score=56.01 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=28.5
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 22 TFHMRPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36789999999999999999999999987643
No 180
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.19 E-value=0.026 Score=53.48 Aligned_cols=36 Identities=31% Similarity=0.340 Sum_probs=23.7
Q ss_pred eeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHH
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAE 284 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e 284 (615)
|++|.|++|||||||+..|++. ++.+ +.|-++++.+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~---g~~~---v~E~ar~~~~ 36 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR---GYPV---VPEYAREIIE 36 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH---T-EE---E--TTHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc---CCeE---EeecHHHHHH
Confidence 6899999999999999999987 4332 2776766554
No 181
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.19 E-value=0.027 Score=57.96 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=29.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.-|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 29 PLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 344788999999999999999999999999764
No 182
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.19 E-value=0.028 Score=55.80 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=28.4
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||++.|+...
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999998753
No 183
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.18 E-value=0.03 Score=53.76 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=28.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|++++|.|+.|+|||||+..|+...
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344788899999999999999999999998753
No 184
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.18 E-value=0.029 Score=53.96 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=28.4
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
=|.+.+|+.++|.|+.|+|||||+..|+....
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 36788999999999999999999999997643
No 185
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.17 E-value=0.028 Score=55.45 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=28.3
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999999753
No 186
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.17 E-value=0.081 Score=56.85 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=71.7
Q ss_pred Cccccceeeeccccc---cccCceeeccCCCCCCcchhhHHh-hhcCCCC-EEEEEeecCcchHHHHHHHhccccccccc
Q psy13480 223 YPLLTGQRVLDSLFP---CVLGGTTAIPGAFGCGKTVISQAL-SKYSNSD-VIVYVGCGERGNEMAEVLRDFPELTIEVD 297 (615)
Q Consensus 223 ~pl~TG~rviD~l~P---i~kGq~~~I~g~~G~GKt~l~~~l-a~~~~ad-viV~~~iGERg~Ev~e~~~~f~~l~~~~~ 297 (615)
+.+-||.-.+|..++ +.+|.-+=|+|+.++|||+|+.+. +.....+ .|+|+-+ |..-.. ++.+.+-
T Consensus 32 ~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~-e~~ld~-~~a~~lG------- 102 (322)
T PF00154_consen 32 EVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDA-EHALDP-EYAESLG------- 102 (322)
T ss_dssp -EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEES-SS---H-HHHHHTT-------
T ss_pred ceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecC-cccchh-hHHHhcC-------
Confidence 467999999999998 457888899999999999997654 4433344 5777776 433332 4444431
Q ss_pred CccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCC
Q psy13480 298 GVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 365 (615)
Q Consensus 298 g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE 365 (615)
--++|- +|+.+.+ . --++.+||.+...|.-.++++||+..-+ -..|+-..+++
T Consensus 103 ----vdl~rl-lv~~P~~---~------E~al~~~e~lirsg~~~lVVvDSv~al~-p~~E~e~~~~~ 155 (322)
T PF00154_consen 103 ----VDLDRL-LVVQPDT---G------EQALWIAEQLIRSGAVDLVVVDSVAALV-PKAELEGEIGD 155 (322)
T ss_dssp ------GGGE-EEEE-SS---H------HHHHHHHHHHHHTTSESEEEEE-CTT-B--HHHHTTSTSS
T ss_pred ----ccccce-EEecCCc---H------HHHHHHHHHHhhcccccEEEEecCcccC-CHHHHhhcccc
Confidence 114553 4444322 1 2357888998888887789999986321 23466665554
No 187
>PRK08727 hypothetical protein; Validated
Probab=94.15 E-value=0.2 Score=50.97 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=66.6
Q ss_pred ceeeccCCCCCCcchhhHHhhhc-CCCC-EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHH
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY-SNSD-VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVA 319 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~-~~ad-viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~ 319 (615)
.-+.|.|++|||||+|++.+++. ++.+ -++|+.+.+..+...++++.+. +..+||.---+.-..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~--------------~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALE--------------GRSLVALDGLESIAG 107 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHh--------------cCCEEEEeCcccccC
Confidence 34889999999999999998653 1222 3667776654444555554432 122455544332221
Q ss_pred HH--HHHHHHHhhHHHHHHhCCCcEEEEee-CchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHh
Q psy13480 320 AR--EASIYTGITLSEYFRDMGYNVSMMAD-STSRWAEALREISGRLAEMPADSGYPAYLGARLASFYER 386 (615)
Q Consensus 320 ~R--~~s~~tg~tiAEyfrd~G~~Vll~~D-s~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ER 386 (615)
.+ ....+ .+=.+.++.|..|++..+ ....|......+..|++....-+=-|++ ...+.+++++
T Consensus 108 ~~~~~~~lf---~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~-~e~~~~iL~~ 173 (233)
T PRK08727 108 QREDEVALF---DFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLD-DVARAAVLRE 173 (233)
T ss_pred ChHHHHHHH---HHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCC-HHHHHHHHHH
Confidence 11 11122 222333466777777665 4456655555555565433222222223 3444455554
No 188
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.14 E-value=0.029 Score=57.63 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334688999999999999999999999998764
No 189
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.14 E-value=0.028 Score=56.47 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=29.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 556789999999999999999999999998753
No 190
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.13 E-value=0.026 Score=56.81 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=28.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44468899999999999999999999999875
No 191
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.12 E-value=0.024 Score=57.64 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=27.4
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 26 SLEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 367899999999999999999999999864
No 192
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.10 E-value=0.03 Score=55.99 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=28.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 5 ~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 5 KTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999999865
No 193
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.025 Score=56.65 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=28.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.-|.+.+|+.++|.|+.|+|||||+..|+..
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 20 DISLDIPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34567889999999999999999999999865
No 194
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.09 E-value=0.03 Score=55.14 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+-+|++++|.|++|+|||||+..|+...
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445788899999999999999999999998753
No 195
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.09 E-value=0.032 Score=55.91 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=27.2
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999999997543
No 196
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.09 E-value=0.029 Score=55.79 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|++++|.|++|+|||||+..|+...
T Consensus 29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 29 PLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred cceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 444788999999999999999999999998753
No 197
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=0.024 Score=56.05 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=28.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+..+|.|++|+|||||+..|+..-
T Consensus 25 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred eEEEEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 334678899999999999999999999998753
No 198
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.07 E-value=0.042 Score=58.84 Aligned_cols=106 Identities=17% Similarity=0.264 Sum_probs=58.0
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHH---------hcccccccccCccccCc--ceEEE
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLR---------DFPELTIEVDGVTESIM--KRTTL 309 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~---------~f~~l~~~~~g~~~~~m--~rtvl 309 (615)
+++++|.|++|+|||||...|++.-+..+ +-|.+||..+-.. +|..+.+.........+ ...++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~-----v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~ii 236 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTS-----AWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIA 236 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCE-----EeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeE
Confidence 78999999999999999999998655543 4444555433221 11111111000000111 23577
Q ss_pred EEeCCCCCHHHHHHHHHHHh---hHHHHHHhCCCcEEEEeeCchHH
Q psy13480 310 VANTSNMPVAAREASIYTGI---TLSEYFRDMGYNVSMMADSTSRW 352 (615)
Q Consensus 310 vanTsn~p~~~R~~s~~tg~---tiAEyfrd~G~~Vll~~Ds~tR~ 352 (615)
++.| +-+....+.-.|.+- .+.+..+.+-||..++++--+-|
T Consensus 237 f~D~-~~~~t~~y~~~~~~~~~~~~~~~~~~~~ydl~~l~~p~~~~ 281 (325)
T TIGR01526 237 FIDT-DFITTQVFAKQYEGREHPFLDSDIAEYPFDLTLLLKPNTEW 281 (325)
T ss_pred EEcC-ChHHHHHHHHHHcCCCCHHHHHHHHhcCCCEEEECCCCCCC
Confidence 7777 666666666666552 13444455667755555433334
No 199
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.07 E-value=0.029 Score=60.74 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=30.4
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.=|.+.+|+.++|.|++|||||||+..|+.....+
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~ 59 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT 59 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC
Confidence 55788999999999999999999999999765443
No 200
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.06 E-value=0.033 Score=56.23 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=45.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEe
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVAN 312 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvan 312 (615)
|.-+.|+.|+.+.+.||+|||||||++-+|-+-..+-=.+-.-| -+.+ .+.-+|.||+-|
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~-----------------r~i~---gPgaergvVFQ~ 82 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG-----------------RRIE---GPGAERGVVFQN 82 (259)
T ss_pred ccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECC-----------------Eecc---CCCccceeEecc
Confidence 34457899999999999999999999999887544321111111 0122 356688888888
Q ss_pred CCCCCH
Q psy13480 313 TSNMPV 318 (615)
Q Consensus 313 Tsn~p~ 318 (615)
..=+|=
T Consensus 83 ~~LlPW 88 (259)
T COG4525 83 EALLPW 88 (259)
T ss_pred Cccchh
Confidence 877764
No 201
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.05 E-value=0.031 Score=56.23 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=28.5
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34688999999999999999999999998753
No 202
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.04 E-value=0.031 Score=56.40 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=29.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344788999999999999999999999999764
No 203
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.04 E-value=0.032 Score=56.57 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=29.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3347889999999999999999999999987543
No 204
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.03 E-value=0.031 Score=56.61 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=29.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445788999999999999999999999998753
No 205
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.03 E-value=0.03 Score=57.22 Aligned_cols=33 Identities=36% Similarity=0.392 Sum_probs=29.4
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445789999999999999999999999999754
No 206
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.03 E-value=0.027 Score=57.31 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=28.6
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 23 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34788999999999999999999999998753
No 207
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.03 E-value=0.03 Score=56.34 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+..+|.|++|+|||||+..|+...
T Consensus 21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred ceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 344688999999999999999999999999763
No 208
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.00 E-value=0.031 Score=57.83 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=29.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4557899999999999999999999999987643
No 209
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.99 E-value=0.026 Score=58.05 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=27.2
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 41 SMDIEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 367889999999999999999999999863
No 210
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=93.97 E-value=0.033 Score=56.71 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=29.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 18 GLNFSVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444789999999999999999999999998754
No 211
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=93.97 E-value=0.033 Score=56.23 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344788999999999999999999999998754
No 212
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=93.96 E-value=0.049 Score=60.00 Aligned_cols=122 Identities=25% Similarity=0.291 Sum_probs=70.9
Q ss_pred eeeeccc-cccccCceeeccCCCCCCcchhhHHhhhcCCCC-EEEEEee---cCcchHHHHHHHhcccccccccCccccC
Q psy13480 229 QRVLDSL-FPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD-VIVYVGC---GERGNEMAEVLRDFPELTIEVDGVTESI 303 (615)
Q Consensus 229 ~rviD~l-~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad-viV~~~i---GERg~Ev~e~~~~f~~l~~~~~g~~~~~ 303 (615)
.+++|.+ +.+.+||+.||.|.+||||||+-++|.+--.++ -|.|.+- |-..++|.-+.++
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~--------------- 364 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRR--------------- 364 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhh---------------
Confidence 4666654 789999999999999999999999998754443 4555543 2233444444433
Q ss_pred cceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCc
Q psy13480 304 MKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAY 375 (615)
Q Consensus 304 m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~ 375 (615)
.-+|--...-+-.-|. -.+--|+|-++=.+.+ +==++...|-++|++|+++ .+..+.-||-.
T Consensus 365 ---mQvVFQDPygSLsPRm---tV~qII~EGL~vh~~~-ls~~eR~~rv~~aL~EVGL---Dp~~r~RYPhE 426 (534)
T COG4172 365 ---MQVVFQDPYGSLSPRM---TVGQIIEEGLRVHEPK-LSAAERDQRVIEALEEVGL---DPATRNRYPHE 426 (534)
T ss_pred ---ceEEEeCCCCCCCccc---CHHHHhhhhhhhcCCC-CCHHHHHHHHHHHHHHcCC---ChhHhhcCCcc
Confidence 3333322221111111 1133345544421111 1124556799999999987 35566778843
No 213
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.96 E-value=0.034 Score=54.87 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=29.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+..+|.|+.|+|||||++.|+...
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455788999999999999999999999998753
No 214
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=93.96 E-value=0.031 Score=60.49 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=30.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+.....+
T Consensus 20 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~ 55 (353)
T PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT 55 (353)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 455789999999999999999999999999864433
No 215
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.96 E-value=0.027 Score=57.57 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=28.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 30 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 30 NINLSIPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 33467899999999999999999999999864
No 216
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=93.95 E-value=0.048 Score=55.25 Aligned_cols=47 Identities=26% Similarity=0.310 Sum_probs=37.4
Q ss_pred eeeccccccccCceeeccCCCCCCcchhhHHhhhcCC--CCEEEEEeec
Q psy13480 230 RVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN--SDVIVYVGCG 276 (615)
Q Consensus 230 rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~--adviV~~~iG 276 (615)
-+-|.-|...+|+-+||+|+.|+||||++.+||-.-. ...+.+.+|.
T Consensus 17 AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d 65 (245)
T COG4555 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVD 65 (245)
T ss_pred hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecc
Confidence 3458889999999999999999999999999997643 3345555554
No 217
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.93 E-value=0.033 Score=57.52 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=29.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 30 ~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456889999999999999999999999997643
No 218
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.92 E-value=0.028 Score=57.03 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=27.6
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 24 VSLDFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3467889999999999999999999999864
No 219
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.92 E-value=0.029 Score=55.28 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=28.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34468899999999999999999999999875
No 220
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.91 E-value=0.034 Score=55.78 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=28.4
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 25 NISFSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34478899999999999999999999999865
No 221
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.034 Score=62.85 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=30.3
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
-|.+.+|++++|.|.+||||||++|.|++.-+.+
T Consensus 358 ~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC
Confidence 4789999999999999999999999999865555
No 222
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.91 E-value=0.034 Score=55.45 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=27.7
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 20 SLTVPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999999998653
No 223
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.89 E-value=0.034 Score=58.50 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=29.2
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.=|.+.+|+.+||.|+.|+|||||+..|+..-.
T Consensus 12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 447889999999999999999999999997543
No 224
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.86 E-value=0.035 Score=56.45 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=29.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444788999999999999999999999998764
No 225
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.85 E-value=0.035 Score=55.85 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=28.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568889999999999999999999999865
No 226
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=93.84 E-value=0.034 Score=60.30 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=31.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|||||||+..|+.....+
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~ 57 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT 57 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC
Confidence 455789999999999999999999999999764443
No 227
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.84 E-value=0.03 Score=56.80 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=27.7
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 22 VTMKIFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred eeEeecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468889999999999999999999999964
No 228
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.83 E-value=0.035 Score=57.35 Aligned_cols=33 Identities=33% Similarity=0.379 Sum_probs=29.2
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
=|.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 61 (271)
T PRK13632 29 SFEINEGEYVAILGHNGSGKSTISKILTGLLKP 61 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 368899999999999999999999999886443
No 229
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.83 E-value=0.19 Score=51.04 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.2
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
++.+.|.|++|+|||++++.+++..+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34688999999999999999987644
No 230
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.82 E-value=0.04 Score=56.92 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=27.6
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
+.+|++++|.|++|+|||||+..|+..-..+
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~ 53 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPN 53 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 8899999999999999999999999865443
No 231
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.82 E-value=0.036 Score=52.04 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=27.8
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5788999999999999999999999987643
No 232
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.82 E-value=0.036 Score=55.13 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=26.9
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.+.+|+..+|.|++|+|||||+..|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 67889999999999999999999999864
No 233
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.82 E-value=0.031 Score=56.20 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=28.8
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.=|.+.+|+.++|.|+.|+|||||+..|+....
T Consensus 5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346788999999999999999999999987643
No 234
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=93.80 E-value=0.035 Score=60.12 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=31.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+..|+..+|.|++|||||||+..||-....|
T Consensus 22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~ 57 (353)
T TIGR03265 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT 57 (353)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC
Confidence 455788999999999999999999999999865443
No 235
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.79 E-value=0.032 Score=56.86 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=28.3
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 26 INIKILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34688999999999999999999999998653
No 236
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.79 E-value=0.16 Score=51.96 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=34.0
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc----CCCCEEEEEeecCcchH
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY----SNSDVIVYVGCGERGNE 281 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~----~~adviV~~~iGERg~E 281 (615)
...+.++|.|..|+|||+|+.++++. ..-|.++++-++...+.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~ 63 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL 63 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc
Confidence 45677899999999999999998754 45578888888876654
No 237
>PF13479 AAA_24: AAA domain
Probab=93.78 E-value=0.32 Score=48.68 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.4
Q ss_pred cCceeeccCCCCCCcchhhHHh
Q psy13480 240 LGGTTAIPGAFGCGKTVISQAL 261 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~l 261 (615)
++.+++|.|++|+|||+++..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 4568999999999999998877
No 238
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.78 E-value=0.037 Score=55.84 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=28.1
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|+..+|.|++|+|||||+..|+..
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 21 LSLYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999999999875
No 239
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=93.78 E-value=0.036 Score=57.08 Aligned_cols=32 Identities=34% Similarity=0.440 Sum_probs=28.4
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 26 isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34788899999999999999999999998753
No 240
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.78 E-value=0.035 Score=55.89 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=27.5
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 25 SLHINQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 378899999999999999999999999865
No 241
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.76 E-value=0.038 Score=55.03 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334788999999999999999999999998753
No 242
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.76 E-value=0.031 Score=56.84 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=27.3
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=|.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 24 SMDFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 367889999999999999999999999864
No 243
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.75 E-value=0.038 Score=55.16 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=27.4
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 678899999999999999999999998653
No 244
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.71 E-value=0.033 Score=56.50 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=28.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 19 NINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344678999999999999999999999998643
No 245
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=93.71 E-value=0.032 Score=57.07 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=28.0
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3467899999999999999999999999865
No 246
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=93.70 E-value=0.033 Score=59.59 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=29.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.|.+|++++|.|++|+|||||++.|+..-
T Consensus 25 ~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 25 RVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 334689999999999999999999999998763
No 247
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.70 E-value=0.038 Score=55.86 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=28.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 39 ~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 39 GISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344688899999999999999999999998753
No 248
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.70 E-value=0.04 Score=52.87 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=28.4
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
=|.+.+|+..+|.|+.|+|||||+..|+....
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 36788999999999999999999999987643
No 249
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.69 E-value=0.04 Score=54.30 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=28.3
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 27 isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 27 VSFKVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34678899999999999999999999998753
No 250
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.68 E-value=0.043 Score=48.97 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=26.1
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEeecC
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGE 277 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGE 277 (615)
++|.|++|||||++.+.+|+..+.. ++.+-+++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-~~~i~~~~ 33 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-FIEIDGSE 33 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-EEEEETTH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-cccccccc
Confidence 4689999999999999999987654 45555553
No 251
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.68 E-value=0.32 Score=52.54 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=51.9
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC---CCC-EEEEEeecCcchHHHHHHHhccc-ccccccCccccCcceEEEEEeCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS---NSD-VIVYVGCGERGNEMAEVLRDFPE-LTIEVDGVTESIMKRTTLVANTS 314 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~---~ad-viV~~~iGERg~Ev~e~~~~f~~-l~~~~~g~~~~~m~rtvlvanTs 314 (615)
+++.+.|.|++|+|||+++..+++.. ..+ .++|+-|-+... ...++.++-+ +. + .+.-. .
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~-~~~~~~~i~~~l~----~--~~~~~--------~ 118 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT-RYAIFSEIARQLF----G--HPPPS--------S 118 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC-HHHHHHHHHHHhc----C--CCCCC--------C
Confidence 44668899999999999999887642 112 378887765433 3344433211 00 0 00000 0
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHH
Q psy13480 315 NMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWA 353 (615)
Q Consensus 315 n~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~A 353 (615)
..+... .--.+.+++...|+.++|++|.+-...
T Consensus 119 ~~~~~~------~~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 119 GLSFDE------LFDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred CCCHHH------HHHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 011111 111234566667888999999997543
No 252
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.64 E-value=0.039 Score=57.19 Aligned_cols=33 Identities=30% Similarity=0.270 Sum_probs=28.9
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 26 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346888999999999999999999999987643
No 253
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.62 E-value=0.041 Score=54.61 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=28.4
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 23 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 23 ISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34788899999999999999999999998753
No 254
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.62 E-value=0.042 Score=53.84 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=28.5
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|+.|+|||||+..|+..-
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999999999998753
No 255
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.61 E-value=0.034 Score=56.46 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=27.4
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 27 NLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 367899999999999999999999999874
No 256
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.61 E-value=0.039 Score=57.22 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=29.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.|.+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4447899999999999999999999999987643
No 257
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.60 E-value=0.04 Score=56.54 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=28.5
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 23 vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34788999999999999999999999998753
No 258
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.60 E-value=0.04 Score=56.89 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=28.4
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 20 LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34688899999999999999999999998753
No 259
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.60 E-value=0.042 Score=56.52 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=29.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||++.|+...
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455789999999999999999999999998764
No 260
>PRK05973 replicative DNA helicase; Provisional
Probab=93.59 E-value=0.13 Score=52.98 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=41.2
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcC-CCC-EEEEEeecCcchHHHHHHHhc
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYS-NSD-VIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~-~ad-viV~~~iGERg~Ev~e~~~~f 289 (615)
-+-+|..+.|-|++|+|||+++.+++... ... -++|+..=|..+++.+=...+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHc
Confidence 45789999999999999999999987642 223 488888888777777666655
No 261
>PRK08118 topology modulation protein; Reviewed
Probab=93.59 E-value=0.04 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.6
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
+++.|+|++|+||||++..|++..+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999986443
No 262
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.58 E-value=0.042 Score=56.83 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=29.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+..+|.|++|+|||||+..|+...
T Consensus 42 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344788999999999999999999999998754
No 263
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.58 E-value=0.035 Score=56.28 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=27.8
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 22 INLPIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred ceEEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999999999864
No 264
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.58 E-value=0.041 Score=56.41 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=29.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+..+|.|++|+|||||+..|+....
T Consensus 22 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 22 AVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3346788999999999999999999999987543
No 265
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.57 E-value=0.042 Score=56.70 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=29.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444788999999999999999999999998754
No 266
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.57 E-value=0.037 Score=54.39 Aligned_cols=32 Identities=31% Similarity=0.282 Sum_probs=28.6
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 28 ~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34688999999999999999999999998754
No 267
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.57 E-value=0.041 Score=56.80 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=29.4
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.-|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445789999999999999999999999998753
No 268
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.56 E-value=0.042 Score=57.88 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=29.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|+.|+|||||+..|+....
T Consensus 22 ~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3347899999999999999999999999987543
No 269
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.55 E-value=0.036 Score=56.22 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=28.0
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 23 VNLDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3467899999999999999999999999875
No 270
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.55 E-value=0.041 Score=55.95 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=28.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred eeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 334688999999999999999999999998653
No 271
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.54 E-value=0.042 Score=56.40 Aligned_cols=31 Identities=32% Similarity=0.337 Sum_probs=28.1
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+-+|+.++|.|++|+|||||+..|+..-
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3688899999999999999999999998763
No 272
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.54 E-value=0.2 Score=52.82 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=64.7
Q ss_pred CCccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcCC-CC-EEEEE-eec-CcchHHHHHHHhccccccc
Q psy13480 222 NYPLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYSN-SD-VIVYV-GCG-ERGNEMAEVLRDFPELTIE 295 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~~-ad-viV~~-~iG-ERg~Ev~e~~~~f~~l~~~ 295 (615)
...+-||...+|.++- +-+|--.=|+|++|+|||+++++++-.+. ++ .++|+ ..| -+......+...+
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~------ 112 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL------ 112 (279)
T ss_pred cccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh------
Confidence 4567899999999986 23555677999999999999999876432 22 45554 666 3333333333221
Q ss_pred ccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCC--cEEEEeeCchHH
Q psy13480 296 VDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGY--NVSMMADSTSRW 352 (615)
Q Consensus 296 ~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~--~Vll~~Ds~tR~ 352 (615)
..-+++...+.-.- +.-|++++...+. ==|++.||++-+
T Consensus 113 ----------~d~l~v~~~~~~e~--------q~~i~~~~~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 113 ----------LDNLLVSQPDTGEQ--------QLEIAEKLARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred ----------hcceeEecCCCHHH--------HHHHHHHHHHhccCCCCEEEEecCccc
Confidence 11233444443333 4445555554444 446899999743
No 273
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.53 E-value=0.036 Score=56.79 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=27.8
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 32 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 32 INLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468899999999999999999999999864
No 274
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.53 E-value=0.043 Score=55.07 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=28.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 445678899999999999999999999998753
No 275
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.53 E-value=0.041 Score=54.34 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=26.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+| .++|.|++|+|||||++.|+..
T Consensus 18 ~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 18 GVSLTLGPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred ceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 344677888 9999999999999999999864
No 276
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.53 E-value=0.036 Score=57.14 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=28.1
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+..+|.|++|+|||||+..|+...
T Consensus 40 sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 40 DMQFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4788999999999999999999999998753
No 277
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.51 E-value=0.037 Score=56.17 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=28.6
Q ss_pred eccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 232 LDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 232 iD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-|.=|.+.+|+.++|.|+.|+|||||+..|+..
T Consensus 20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344578899999999999999999999999853
No 278
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.51 E-value=0.049 Score=55.89 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=26.6
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.+.+|+.++|.|+.|+|||||+..|+....
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 467899999999999999999999987643
No 279
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.51 E-value=0.041 Score=57.38 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=28.6
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 30 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 30 TSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34688999999999999999999999998754
No 280
>PRK07261 topology modulation protein; Provisional
Probab=93.50 E-value=0.047 Score=52.90 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.3
Q ss_pred ceeeccCCCCCCcchhhHHhhhcC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
++++|.|++|+|||||+.+|++..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 281
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.49 E-value=0.037 Score=56.52 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344788999999999999999999999998754
No 282
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.48 E-value=0.038 Score=56.15 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=27.8
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3468889999999999999999999999864
No 283
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.47 E-value=0.055 Score=52.76 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=24.8
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.|..+.|.|++|+|||||+..|+.....+
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCe
Confidence 37789999999999999999998865544
No 284
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.45 E-value=0.038 Score=56.17 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=28.4
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 23 DINLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44468899999999999999999999999864
No 285
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.45 E-value=0.045 Score=55.29 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=27.5
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999999999998753
No 286
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.44 E-value=0.038 Score=56.16 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=27.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhh
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 21 GISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3447889999999999999999999999975
No 287
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.43 E-value=0.044 Score=56.87 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=28.7
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
=|.+.+|+.++|.|++|+|||||++.|+....
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 25 SLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 36889999999999999999999999997643
No 288
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.41 E-value=0.039 Score=56.50 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=28.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 30 NVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44478899999999999999999999999864
No 289
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.40 E-value=0.039 Score=56.08 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=27.2
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 24 NLPIYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 367889999999999999999999999864
No 290
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.40 E-value=0.039 Score=57.04 Aligned_cols=32 Identities=28% Similarity=0.539 Sum_probs=28.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+-+|+.++|.|++|+|||||+..|+..
T Consensus 31 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 31 NVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 33478999999999999999999999999864
No 291
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=93.39 E-value=0.044 Score=59.93 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=30.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+..+|.|++|||||||+.+|+.....+
T Consensus 32 ~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~ 67 (375)
T PRK09452 32 NLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD 67 (375)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 355789999999999999999999999999764443
No 292
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.37 E-value=0.04 Score=57.17 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=28.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 38 ~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34467899999999999999999999999854
No 293
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.36 E-value=0.095 Score=49.65 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=24.0
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecCc
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGER 278 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGER 278 (615)
..-+.+..+.|.|++|+|||+|+..+.+.. ...++++.-|-..
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 566777889999999999999999765431 1224566655554
No 294
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.36 E-value=0.046 Score=55.58 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 ~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 22 NINMDFPERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3346788999999999999999999999987543
No 295
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.36 E-value=0.04 Score=56.07 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=27.7
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 25 ITISIPKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred eEEEECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468899999999999999999999999853
No 296
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.35 E-value=0.039 Score=54.02 Aligned_cols=29 Identities=31% Similarity=0.277 Sum_probs=26.7
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhh
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
=|.+.+|+.++|.|++|+|||||+..|+.
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 36788999999999999999999999985
No 297
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.34 E-value=0.047 Score=57.04 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=29.0
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.=|.|.+|+.++|.|++|+|||||+..|+....
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346889999999999999999999999987643
No 298
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=93.34 E-value=0.036 Score=59.35 Aligned_cols=33 Identities=33% Similarity=0.325 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.|.+|++++|.|++|+|||||++.|+...
T Consensus 34 ~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 34 DLNFSLRAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 344789999999999999999999999998753
No 299
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.31 E-value=0.041 Score=58.92 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=29.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.|.+|++++|.|++|+|||||+..|+..-
T Consensus 33 ~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 33 GVSFTLERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 445788999999999999999999999998753
No 300
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=93.31 E-value=0.05 Score=54.20 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=28.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||++.|+...
T Consensus 23 ~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344788899999999999999999999998753
No 301
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.29 E-value=0.049 Score=55.65 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=28.5
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999998764
No 302
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.28 E-value=0.048 Score=56.97 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=29.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|+.|+|||||+..|+..-.
T Consensus 25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLK 58 (287)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3447899999999999999999999999987543
No 303
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.28 E-value=0.047 Score=56.87 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=28.9
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.=|.+.+|+.++|.|+.|+|||||+..|+....
T Consensus 26 v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 26 ISFSIPRGSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 346788999999999999999999999997643
No 304
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.27 E-value=0.042 Score=56.83 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=28.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 43 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 43 DISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 33467889999999999999999999999865
No 305
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.25 E-value=0.043 Score=54.94 Aligned_cols=33 Identities=33% Similarity=0.371 Sum_probs=28.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.-|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 345688999999999999999999999998653
No 306
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.24 E-value=0.05 Score=55.94 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=29.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 28 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 28 DITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4447889999999999999999999999997644
No 307
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=93.23 E-value=0.048 Score=59.61 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=30.4
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.=|.+.+|+.++|.|++|||||||+..||.....+
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~ 72 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT 72 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 44788999999999999999999999999765444
No 308
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.22 E-value=0.042 Score=58.25 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=29.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 25 ~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345789999999999999999999999998753
No 309
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.21 E-value=0.043 Score=54.87 Aligned_cols=30 Identities=33% Similarity=0.438 Sum_probs=27.3
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-|++-+||+.+|.|..|+|||||..||+--
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGm 62 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhcc
Confidence 478999999999999999999999998753
No 310
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.21 E-value=0.045 Score=56.35 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=28.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 28 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 28 NVWLDIPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34478899999999999999999999999853
No 311
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.20 E-value=0.044 Score=56.17 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=28.0
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 26 ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468899999999999999999999999875
No 312
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=93.20 E-value=0.059 Score=58.21 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=31.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
|.=|.+.+|+..+|.|++|+|||||+..|+.....
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p 49 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP 49 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 66688999999999999999999999999876433
No 313
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.19 E-value=0.044 Score=56.96 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=28.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 55578899999999999999999999999865
No 314
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.19 E-value=0.053 Score=54.50 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=28.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 40 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 40 DVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33468999999999999999999999999864
No 315
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=93.19 E-value=0.051 Score=55.52 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=27.5
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 678899999999999999999999998754
No 316
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.18 E-value=0.044 Score=57.33 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=28.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||++.|+..
T Consensus 57 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 33468899999999999999999999999864
No 317
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.16 E-value=0.52 Score=43.01 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.0
Q ss_pred eeccCCCCCCcchhhHHhhhcCC
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
+.+.|++||||||+..++++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 46889999999999999997655
No 318
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=93.16 E-value=0.052 Score=55.39 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=27.5
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=|.+.+|+..+|.|++|+|||||+..|+..
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 22 SLSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 367899999999999999999999999875
No 319
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.15 E-value=0.043 Score=57.44 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=29.4
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.|.+|+.++|.|+.|+|||||+..|+..-
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 556789999999999999999999999998653
No 320
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.14 E-value=0.051 Score=61.27 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=31.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+-+|++++|.|++|+|||||++.|++.-+.+
T Consensus 353 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 353 GVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 445789999999999999999999999999864443
No 321
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.14 E-value=0.046 Score=55.52 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=28.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+..|+.++|.|++|+|||||+..|+..
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44478889999999999999999999999864
No 322
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=93.13 E-value=0.044 Score=58.78 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=29.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.|.+|+.++|.|++|+|||||+..|+...
T Consensus 39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 556789999999999999999999999998753
No 323
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.11 E-value=0.34 Score=51.90 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=28.5
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcC-CCC-EEEEEeec
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYS-NSD-VIVYVGCG 276 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~-~ad-viV~~~iG 276 (615)
.+|+.+++.|++|+||||++..||.+. ... -|.++.|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 578999999999999999999988652 222 24445554
No 324
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=93.11 E-value=0.055 Score=55.92 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=29.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|++++|.|++|+|||||+..|+...
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 30 NVSLSLKSGETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444789999999999999999999999998753
No 325
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.11 E-value=0.053 Score=58.60 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=30.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+..+|.|++|+|||||+..|+.....+
T Consensus 23 ~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~ 58 (343)
T TIGR02314 23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 58 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 445789999999999999999999999998765443
No 326
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.10 E-value=0.055 Score=54.64 Aligned_cols=31 Identities=23% Similarity=0.376 Sum_probs=28.0
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.|.+|++.+|.|++|+|||||+..|+...
T Consensus 19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~ 49 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFI 49 (235)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3688899999999999999999999998753
No 327
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.09 E-value=0.047 Score=56.83 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=28.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.|.+|+.++|.|++|+|||||+..|+..-
T Consensus 19 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 19 DLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334678999999999999999999999998653
No 328
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.08 E-value=0.053 Score=56.71 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=29.2
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 26 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 347899999999999999999999999987643
No 329
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.08 E-value=0.047 Score=56.52 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=28.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 42 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 42 NINLDIHENEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 33467889999999999999999999999865
No 330
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.07 E-value=0.054 Score=56.35 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=29.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.|.+|+.++|.|++|+|||||+..|+..-
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455789999999999999999999999998763
No 331
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.06 E-value=0.047 Score=57.08 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=28.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.|..|+.++|.|++|+|||||+..|+..
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45578999999999999999999999999863
No 332
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.05 E-value=0.048 Score=56.57 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.-|.|.+|+.++|.|+.|+|||||+..|+..
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55678999999999999999999999999875
No 333
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.04 E-value=0.037 Score=57.72 Aligned_cols=98 Identities=26% Similarity=0.358 Sum_probs=60.3
Q ss_pred ceeeeccccc-cccCceeeccCCCCCCcchhhHH----------------------------------------------
Q psy13480 228 GQRVLDSLFP-CVLGGTTAIPGAFGCGKTVISQA---------------------------------------------- 260 (615)
Q Consensus 228 G~rviD~l~P-i~kGq~~~I~g~~G~GKt~l~~~---------------------------------------------- 260 (615)
+..+++.++| .++.-++||.|++|+|||||...
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfI 94 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFI 94 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEE
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEE
Confidence 4456777776 47888999999999999998522
Q ss_pred ---------------------hhhcCCCCEEEE--EeecCcchHHHHHHHhcccccccccCccc-----cCcceE-EEEE
Q psy13480 261 ---------------------LSKYSNSDVIVY--VGCGERGNEMAEVLRDFPELTIEVDGVTE-----SIMKRT-TLVA 311 (615)
Q Consensus 261 ---------------------la~~~~adviV~--~~iGERg~Ev~e~~~~f~~l~~~~~g~~~-----~~m~rt-vlva 311 (615)
+...+..|+|++ +|+|+---|+.++.+.+-=+..|-.|..- ++|+-+ ++|+
T Consensus 95 RS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaDi~vV 174 (266)
T PF03308_consen 95 RSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIADIFVV 174 (266)
T ss_dssp EEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-SEEEE
T ss_pred eecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhccEEEE
Confidence 233466787655 67777666777766665444445555432 334332 5888
Q ss_pred eCCCCCHHHHHHHH
Q psy13480 312 NTSNMPVAAREASI 325 (615)
Q Consensus 312 nTsn~p~~~R~~s~ 325 (615)
|-+|.|-+.+...-
T Consensus 175 NKaD~~gA~~~~~~ 188 (266)
T PF03308_consen 175 NKADRPGADRTVRD 188 (266)
T ss_dssp E--SHHHHHHHHHH
T ss_pred eCCChHHHHHHHHH
Confidence 99997777665444
No 334
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=93.04 E-value=0.054 Score=58.94 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=29.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p 55 (369)
T PRK11000 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI 55 (369)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34478899999999999999999999999876433
No 335
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.04 E-value=0.058 Score=53.20 Aligned_cols=86 Identities=20% Similarity=0.313 Sum_probs=46.6
Q ss_pred eeccCCCCCCcchhhHHhhhcC-CCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHH
Q psy13480 244 TAIPGAFGCGKTVISQALSKYS-NSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~-~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~ 322 (615)
+.+-|++|+|||+++.++...- ..+++++- +.++..++-++. .++. ......+...+.
T Consensus 18 ~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~-----~D~~r~~~p~~~-----------~~~~-----~~~~~~~~~~~~ 76 (199)
T PF06414_consen 18 IIIAGQPGSGKSTLARQLLEEFGGGGIVVID-----ADEFRQFHPDYD-----------ELLK-----ADPDEASELTQK 76 (199)
T ss_dssp EEEES-TTSTTHHHHHHHHHHT-TT-SEEE------GGGGGGGSTTHH-----------HHHH-----HHCCCTHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHhhhhccCCCeEEEe-----hHHHHHhccchh-----------hhhh-----hhhhhhHHHHHH
Confidence 3467999999999999886643 44433332 223333321111 1112 133445556666
Q ss_pred HHHHHHhhHHHHHHhCCCcEEEEeeCchHH
Q psy13480 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRW 352 (615)
Q Consensus 323 ~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~ 352 (615)
.+-..+-.+.++..++|+|+++ |.+.++
T Consensus 77 ~a~~~~~~~~~~a~~~~~nii~--E~tl~~ 104 (199)
T PF06414_consen 77 EASRLAEKLIEYAIENRYNIIF--EGTLSN 104 (199)
T ss_dssp HHHHHHHHHHHHHHHCT--EEE--E--TTS
T ss_pred HHHHHHHHHHHHHHHcCCCEEE--ecCCCC
Confidence 6667777778888889998766 776543
No 336
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.02 E-value=0.046 Score=58.44 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=28.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.|.+|+.++|.|++|+|||||++.|+..
T Consensus 25 ~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 25 RISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 34489999999999999999999999999874
No 337
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.01 E-value=0.049 Score=56.24 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=28.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+-+|.++||.|..|+|||||++.||.-
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhCc
Confidence 45689999999999999999999999999864
No 338
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=92.99 E-value=0.059 Score=55.60 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=29.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 445788999999999999999999999998764
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.96 E-value=0.061 Score=50.66 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=30.7
Q ss_pred eccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 232 LDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 232 iD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
-|.-|.+.+|+..+|.|+.|+|||+|+..|+..-..+
T Consensus 16 ~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~ 52 (157)
T cd00267 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT 52 (157)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3445678899999999999999999999998754433
No 340
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.96 E-value=0.049 Score=57.48 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=28.4
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|+.|+|||||++.|+..
T Consensus 63 ~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 63 GVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34568899999999999999999999999864
No 341
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.93 E-value=0.61 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.0
Q ss_pred CceeeccCCCCCCcchhhHHhhh
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~ 263 (615)
|....|.|++|+|||+|+.++|.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHH
Confidence 55678999999999999999874
No 342
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=92.93 E-value=0.055 Score=54.13 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=26.6
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+.+..|+.++|.|++|+|||||+.-||-+.
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 357789999999999999999999888764
No 343
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.92 E-value=0.063 Score=54.00 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=28.9
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.-|.+.+|++++|.|+.|+|||||+..|+..-.
T Consensus 19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346888999999999999999999999987643
No 344
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.92 E-value=0.052 Score=56.72 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=30.9
Q ss_pred eeee-ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 229 QRVL-DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 229 ~rvi-D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.+++ |.-+.|-.|.-+++.|++||||||++.||-+--
T Consensus 14 ~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 14 KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 3444 455789999999999999999999999987753
No 345
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=92.90 E-value=0.052 Score=54.87 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=27.4
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=|.+.+|+.++|.|+.|+|||||+..|+..
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 467889999999999999999999999875
No 346
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=92.89 E-value=0.052 Score=55.97 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=28.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+-+|+.++|.|++|+|||||+..|+...
T Consensus 37 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 37 DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344678899999999999999999999998653
No 347
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=92.88 E-value=0.05 Score=55.49 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=28.9
Q ss_pred eccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 232 LDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 232 iD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 13 GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 344578899999999999999999999999865
No 348
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=92.88 E-value=0.061 Score=53.34 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=29.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 556889999999999999999999999998754
No 349
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=92.86 E-value=0.06 Score=58.55 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=29.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+..|+.++|.|++|+|||||+.+|+-...
T Consensus 23 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 56 (362)
T TIGR03258 23 DLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK 56 (362)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4457889999999999999999999999997543
No 350
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.84 E-value=0.061 Score=55.82 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=29.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+-+|+.++|.|+.|+|||||+..|+..-
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444789999999999999999999999998753
No 351
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.83 E-value=0.06 Score=56.38 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=29.1
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
=|.|.+|+.++|.|++|+|||||+..|+.....
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (290)
T PRK13634 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP 59 (290)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 368999999999999999999999999876443
No 352
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.82 E-value=0.07 Score=52.88 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=29.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+ +.++|.|++|+|||||+..|+...
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 88899999 999999999999999999998653
No 353
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.82 E-value=0.054 Score=55.70 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=28.8
Q ss_pred eccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 232 LDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 232 iD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-|.-|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 344567889999999999999999999999864
No 354
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.79 E-value=0.063 Score=55.94 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=28.5
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
=|.+.+|+..+|.|++|+|||||+..|+....
T Consensus 27 sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 27 SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 37889999999999999999999999987543
No 355
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.76 E-value=0.057 Score=53.60 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=27.9
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
+-+.+|++++|.|++|+|||||+.-+|--.+.+
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s 63 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS 63 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC
Confidence 357899999999999999999999888654433
No 356
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=92.75 E-value=0.065 Score=55.73 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=29.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
|.=|.|.+|+.++|.|+.|+|||||+..|+.....
T Consensus 28 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 62 (280)
T PRK13633 28 DVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP 62 (280)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 33468889999999999999999999999876433
No 357
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.73 E-value=0.065 Score=55.63 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=29.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 22 NINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3447899999999999999999999999997643
No 358
>PRK06893 DNA replication initiation factor; Validated
Probab=92.72 E-value=0.25 Score=50.07 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=19.4
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+.+.|++|||||+|++.+++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999864
No 359
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=92.70 E-value=0.062 Score=58.53 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=30.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|||||||+.+|+.....+
T Consensus 11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~ 46 (363)
T TIGR01186 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT 46 (363)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC
Confidence 445789999999999999999999999999865443
No 360
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=92.68 E-value=0.067 Score=56.61 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=30.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.+||.|+.|+|||||+..|+.....|
T Consensus 25 ~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~ 60 (306)
T PRK13537 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD 60 (306)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 334788999999999999999999999998764444
No 361
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.67 E-value=0.066 Score=55.60 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=28.0
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 27 ~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 27 SFSITKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3688899999999999999999999998753
No 362
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=92.65 E-value=0.089 Score=59.94 Aligned_cols=46 Identities=26% Similarity=0.433 Sum_probs=36.6
Q ss_pred eeeec-cccccccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEe
Q psy13480 229 QRVLD-SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVG 274 (615)
Q Consensus 229 ~rviD-~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~ 274 (615)
++++| .=|-+.+|.+.||.|.+|||||||+..|+.-. .+..++|.+
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g 352 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDG 352 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeC
Confidence 45554 45889999999999999999999999999864 444566655
No 363
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.63 E-value=0.71 Score=48.52 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.8
Q ss_pred CceeeccCCCCCCcchhhHHhhhc
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|--+.+.|++|||||+++..+++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 445789999999999999777664
No 364
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.59 E-value=0.08 Score=51.86 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=25.1
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.+|..++|.|++|+|||||+..|++...
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4799999999999999999999988644
No 365
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.50 E-value=0.064 Score=55.10 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=29.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 25 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 25 GVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 344789999999999999999999999998753
No 366
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.50 E-value=0.072 Score=56.89 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=27.8
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.|.+|+.++|.|++|+|||||+..|+..-
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 788999999999999999999999998753
No 367
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.48 E-value=0.088 Score=56.45 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.|.+|+.+||.|+.|+|||+|+..|+...
T Consensus 100 ~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 100 DLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 334679999999999999999999999998764
No 368
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.47 E-value=0.38 Score=52.79 Aligned_cols=40 Identities=35% Similarity=0.366 Sum_probs=30.9
Q ss_pred cccceeeeccc-cccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 225 LLTGQRVLDSL-FPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 225 l~TG~rviD~l-~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|..-+.+++.. .-+.+|+.+++.||+|+||||++..|+.+
T Consensus 120 l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 120 LAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred HHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34444555544 34678999999999999999999999864
No 369
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.47 E-value=0.19 Score=59.56 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=32.5
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHh
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRD 288 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~ 288 (615)
++-..+.+.|++|||||++++.+++..+...+.+-+.-..-.++.+.+++
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~ 99 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDR 99 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHH
Confidence 34456789999999999999999987766543333222222344444443
No 370
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.45 E-value=0.071 Score=56.12 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=28.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.+||.|+.|+|||||+..|+.-
T Consensus 20 ~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred EeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 33478999999999999999999999999865
No 371
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.40 E-value=0.066 Score=55.17 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=28.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 26 DSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 34578899999999999999999999999764
No 372
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.39 E-value=0.063 Score=53.22 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.7
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+|..++|.|++|+|||||++.|+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999865
No 373
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.33 E-value=0.76 Score=46.05 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=28.2
Q ss_pred eeeccccccccCceeeccCCCCCCcchhhHHhh
Q psy13480 230 RVLDSLFPCVLGGTTAIPGAFGCGKTVISQALS 262 (615)
Q Consensus 230 rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la 262 (615)
..-|.-+....|...+|.|+.|+||||++++++
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence 455667788889999999999999999988774
No 374
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.33 E-value=0.068 Score=54.77 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=27.8
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 40 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 40 VKAYIKPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 3467899999999999999999999999864
No 375
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=92.32 E-value=0.077 Score=57.08 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=29.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 23 ~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 23 NVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3447889999999999999999999999987643
No 376
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.27 E-value=0.082 Score=55.49 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=28.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|++++|.|++|+|||||+..|+..
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45568899999999999999999999999864
No 377
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.24 E-value=0.081 Score=54.03 Aligned_cols=39 Identities=38% Similarity=0.543 Sum_probs=33.7
Q ss_pred ccceeeeccc-cccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 226 LTGQRVLDSL-FPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 226 ~TG~rviD~l-~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++|.|++|.+ +.+..|.-.+|.||.|+|||||+..|+-.
T Consensus 11 ~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred eecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc
Confidence 6788888765 68889999999999999999999977653
No 378
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.20 E-value=0.16 Score=48.61 Aligned_cols=46 Identities=24% Similarity=0.269 Sum_probs=34.6
Q ss_pred eeccCCCCCCcchhhHHhhhc-CCC-CEEEEEeecCcchHHHHHHHhc
Q psy13480 244 TAIPGAFGCGKTVISQALSKY-SNS-DVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~-~~a-dviV~~~iGERg~Ev~e~~~~f 289 (615)
..|.|++|+|||++..+++.. +.. .-++|+..-|..+++.+-.+.|
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHc
Confidence 468999999999999998764 222 3478888888777777666554
No 379
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.14 E-value=0.086 Score=54.97 Aligned_cols=33 Identities=30% Similarity=0.292 Sum_probs=29.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|+.|+|||||++.|+...
T Consensus 24 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~ 56 (283)
T PRK13636 24 GININIKKGEVTAILGGNGAGKSTLFQNLNGIL 56 (283)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445788999999999999999999999998764
No 380
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.10 E-value=0.12 Score=51.08 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.7
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.++-.++|.|++|||||||+..|++.-
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998753
No 381
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=92.10 E-value=0.087 Score=56.78 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=29.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.+|+.|+.|+|||||+..|+..-.
T Consensus 59 ~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 59 GLSFTVASGECFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4447899999999999999999999999987543
No 382
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.10 E-value=0.15 Score=52.51 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=22.4
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
...+..+.+.||+|||||++++.+|+.
T Consensus 39 ~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 39 SKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred CCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 344566789999999999999999874
No 383
>PRK08233 hypothetical protein; Provisional
Probab=92.09 E-value=0.12 Score=49.13 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.2
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
++..++|.|++|+||||++.+|++.-
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhC
Confidence 34678999999999999999999753
No 384
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.03 E-value=0.07 Score=53.87 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.9
Q ss_pred cccccccCceeeccCCCCCCcchhh
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVIS 258 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~ 258 (615)
.=|.+.+|+.++|.|++|||||||+
T Consensus 14 vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 14 VDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ceeecCCCcEEEEEcCCCCCHHHHH
Confidence 3478999999999999999999997
No 385
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.03 E-value=0.6 Score=52.74 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=20.6
Q ss_pred eeccCCCCCCcchhhHHhhhcCCC
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
..+.||+|||||++++.+|+.-++
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 578999999999999999986443
No 386
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.00 E-value=0.039 Score=53.72 Aligned_cols=106 Identities=23% Similarity=0.205 Sum_probs=53.2
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCC-CC-EEEEEeecCcchH--HHHHHH---hcccccccccCccccCcceEEEEEe
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSN-SD-VIVYVGCGERGNE--MAEVLR---DFPELTIEVDGVTESIMKRTTLVAN 312 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~-ad-viV~~~iGERg~E--v~e~~~---~f~~l~~~~~g~~~~~m~rtvlvan 312 (615)
.++.+.|.|+.|+|||+|++.+.+... .+ .++|+-+.+..++ +..++. ...++.... + ..+-+.+..-..
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~--~~~~~~~~~~~~ 95 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEAL-G--ISIPSITLEKIS 95 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHH-H--HHCCTSTTEEEE
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHH-h--hhcccccchhhh
Confidence 468899999999999999999887652 23 3566655433322 223211 000000000 0 000000000000
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHH
Q psy13480 313 TSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWA 353 (615)
Q Consensus 313 Tsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~A 353 (615)
.. ....+...-..+.+++...+.+++|++|++..++
T Consensus 96 ~~-----~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~ 131 (234)
T PF01637_consen 96 KD-----LSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA 131 (234)
T ss_dssp CT-----S-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG
T ss_pred hc-----chhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh
Confidence 00 1111223344556777788888999999998655
No 387
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=91.97 E-value=0.077 Score=59.89 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=28.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|++++|.|++|+|||||+..|+..
T Consensus 18 ~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 18 NISFTIEEGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 45578899999999999999999999999875
No 388
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.97 E-value=0.083 Score=50.70 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.0
Q ss_pred CceeeccCCCCCCcchhhHHhhhcC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|..++|.|++|+|||||+++|+..-
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5678999999999999999998753
No 389
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=91.97 E-value=0.085 Score=59.30 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=28.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|+.|+|||||+..|+..
T Consensus 22 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 22 GAALNVYPGRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34578899999999999999999999999765
No 390
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.96 E-value=0.081 Score=55.36 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=28.2
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.|.+|++++|.|+.|+|||||+..|+...
T Consensus 24 sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 24 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 3689999999999999999999999998754
No 391
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.95 E-value=0.58 Score=52.98 Aligned_cols=106 Identities=23% Similarity=0.240 Sum_probs=57.0
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCE-EEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeC-CCCCH-
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANT-SNMPV- 318 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanT-sn~p~- 318 (615)
+...+.|++|||||++++.+|+.-++.- .-...||+-.. -.++.... ..+ ++-.|. ++.-+
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s-C~~i~~g~-------------~~d--viEIdaas~~gVd 104 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS-CLEITKGI-------------SSD--VLEIDAASNRGIE 104 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH-HHHHHccC-------------Ccc--ceeechhhcccHH
Confidence 3468999999999999999999644421 12345776433 22333110 011 222232 33222
Q ss_pred HHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHH-HHHHHHhhcCCCCC
Q psy13480 319 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAE-ALREISGRLAEMPA 368 (615)
Q Consensus 319 ~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~Ae-AlREIs~~lgE~P~ 368 (615)
..|+..-. +.|-...|+..++++|...+.-. |+..+=..++|+|.
T Consensus 105 ~IReL~e~-----l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~ 150 (484)
T PRK14956 105 NIRELRDN-----VKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPA 150 (484)
T ss_pred HHHHHHHH-----HHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 12322111 12222356667778787765543 66677677788774
No 392
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.93 E-value=0.068 Score=47.46 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.8
Q ss_pred eeccCCCCCCcchhhHHhhhcC
Q psy13480 244 TAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~ 265 (615)
++|.|.+||||||+++.|++.-
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999864
No 393
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.91 E-value=0.1 Score=50.92 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=28.5
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
-|+|++|.-+-+.||+|||||||+.-++-.-+.+
T Consensus 22 n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~ 55 (213)
T COG4136 22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQ 55 (213)
T ss_pred eEEecCCcEEEEECCCCccHHHHHHHHHhhcccC
Confidence 5799999999999999999999998766544333
No 394
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=91.91 E-value=0.091 Score=61.16 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=29.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+++||.|+.|+|||||+..|+...
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445789999999999999999999999998753
No 395
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.90 E-value=0.66 Score=44.66 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=23.4
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
+|.-+.+.|++|+||||+...|++....
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3667889999999999999999876543
No 396
>KOG0060|consensus
Probab=91.89 E-value=0.1 Score=59.54 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=37.1
Q ss_pred CCCCccccceeeec-cccccccCceeeccCCCCCCcchhhHHhhh-cC
Q psy13480 220 PANYPLLTGQRVLD-SLFPCVLGGTTAIPGAFGCGKTVISQALSK-YS 265 (615)
Q Consensus 220 ~~~~pl~TG~rviD-~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~-~~ 265 (615)
+..+|=- |..+|+ .-|-+-.||.++|.||+|||||.|+..++- |.
T Consensus 440 ~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 440 SLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred eecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 3444434 888888 778899999999999999999999999885 54
No 397
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.86 E-value=0.085 Score=55.58 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=32.0
Q ss_pred eeeccccccccCceeeccCCCCCCcchhhHHhhh
Q psy13480 230 RVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 230 rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
-|-|.-|-|.+|+++|+.|+.|+||||++.||+-
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTG 72 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTG 72 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhC
Confidence 6789999999999999999999999999999975
No 398
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=91.77 E-value=0.094 Score=60.91 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=29.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|++++|.|+.|+|||||+..|+....
T Consensus 21 ~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~ 54 (635)
T PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL 54 (635)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3457889999999999999999999999987543
No 399
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.73 E-value=0.75 Score=43.46 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.4
Q ss_pred eeccCCCCCCcchhhHHhhhcC
Q psy13480 244 TAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+.|.|.+|+|||++++.|++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 5688999999999999998764
No 400
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=91.73 E-value=0.26 Score=55.66 Aligned_cols=85 Identities=15% Similarity=0.040 Sum_probs=48.6
Q ss_pred CCccccce-eeec-cccccccCceeeccCCCCCCcchhhHHhhhcCCCC-EEEEEee---cCcchHHHHHHHhccccccc
Q psy13480 222 NYPLLTGQ-RVLD-SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD-VIVYVGC---GERGNEMAEVLRDFPELTIE 295 (615)
Q Consensus 222 ~~pl~TG~-rviD-~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad-viV~~~i---GERg~Ev~e~~~~f~~l~~~ 295 (615)
.+++.+.. +++| .-+.+.+|+.++|.|++|||||||+........+. -|.+-+. +-+.+++..+..-|+.-
T Consensus 11 ~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~f--- 87 (504)
T TIGR03238 11 KRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILAENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFDGF--- 87 (504)
T ss_pred chHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHhcCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHhh---
Confidence 33444433 4443 36789999999999999999999999222122222 2444332 22334444443334321
Q ss_pred ccCccccCcceEEEEEeCC
Q psy13480 296 VDGVTESIMKRTTLVANTS 314 (615)
Q Consensus 296 ~~g~~~~~m~rtvlvanTs 314 (615)
..-.++.+|=.|+-
T Consensus 88 -----n~~~~~lIvaINlG 101 (504)
T TIGR03238 88 -----NQSNKPLIVGINMG 101 (504)
T ss_pred -----hcCCCCEEEEEehh
Confidence 12247777777763
No 401
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.68 E-value=0.088 Score=54.13 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=28.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.-+.+.+|++++|.|++|+|||||+..++--
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL 53 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL 53 (235)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCc
Confidence 66778999999999999999999999998753
No 402
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=91.67 E-value=0.1 Score=59.48 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=29.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
|.=+.+-+|++++|.|++|+|||||+..|+..-+.
T Consensus 361 ~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 361 NINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 34467889999999999999999999999886443
No 403
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.66 E-value=0.38 Score=49.92 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..++.||+|+|||++++.+|+.
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~ 47 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKE 47 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHH
Confidence 4778999999999999999984
No 404
>CHL00195 ycf46 Ycf46; Provisional
Probab=91.61 E-value=0.37 Score=54.66 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=33.0
Q ss_pred eeeccCCCCCCcchhhHHhhhcCCCCEEEEE-------eecCcchHHHHHHHh
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSNSDVIVYV-------GCGERGNEMAEVLRD 288 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~adviV~~-------~iGERg~Ev~e~~~~ 288 (615)
-+++.||+|||||.+.+.+|+..+..++.+- .+|+....+.++++.
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~ 313 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRI 313 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHH
Confidence 4789999999999999999997766543221 246655566666643
No 405
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.61 E-value=0.51 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.1
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+-..+.|++|+||||+...+|+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 45678999999999999999984
No 406
>PLN03073 ABC transporter F family; Provisional
Probab=91.60 E-value=0.087 Score=62.30 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=28.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhh
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
|.=|.|..|.++||.|+.|+|||||+..|+.
T Consensus 195 ~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 195 DASVTLAFGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 5568999999999999999999999999985
No 407
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.59 E-value=0.77 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=22.1
Q ss_pred ccCceeeccCCCCCCcchhhHHhhh
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
.++..+++.|++|+||||++..||.
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3566799999999999999999985
No 408
>KOG0057|consensus
Probab=91.56 E-value=0.11 Score=58.92 Aligned_cols=47 Identities=28% Similarity=0.450 Sum_probs=36.5
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHH
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEV 285 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~ 285 (615)
=|.|.+|.++||.|++||||||++..|-++-+-+=-|++- |.|+.++
T Consensus 372 sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~Id----G~dik~~ 418 (591)
T KOG0057|consen 372 SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILID----GQDIKEV 418 (591)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEEC----CeeHhhh
Confidence 4799999999999999999999999999976533234442 4466665
No 409
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.56 E-value=0.11 Score=52.15 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=36.2
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc-CCC-C-EEEEEeecCcchHHHH
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY-SNS-D-VIVYVGCGERGNEMAE 284 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~-~~a-d-viV~~~iGERg~Ev~e 284 (615)
+.+|+...|-|++|+|||+++.+++.+ +.. + -++|+.+-+...++.+
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 679999999999999999999988653 222 3 4777777776666655
No 410
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.55 E-value=0.11 Score=53.70 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=29.6
Q ss_pred eeecc-ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 230 RVLDS-LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 230 rviD~-l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.|.|. =|.+-||.-.+|.||+|+|||||+..|.-.-
T Consensus 22 ~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 34443 3688999999999999999999999987653
No 411
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.55 E-value=0.55 Score=52.46 Aligned_cols=91 Identities=21% Similarity=0.338 Sum_probs=52.5
Q ss_pred ceeeccCCCCCCcchhhHHhhhcC--CCC-EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCH
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYS--NSD-VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPV 318 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~--~ad-viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~ 318 (615)
..+.+.|++|+||||++..+|.+. ... -+.++.|.-+.....+-++..-+ .+.-.+..+.+...|.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~-----------~~gvp~~~~~~~~~P~ 168 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQ-----------QVGVPVFALGKGQSPV 168 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHH-----------hcCCceEecCCCCCHH
Confidence 357789999999999999998762 223 47777887665555554544321 0111233344444453
Q ss_pred HHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchH
Q psy13480 319 AAREASIYTGITLSEYFRDMGYNVSMMADSTSR 351 (615)
Q Consensus 319 ~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR 351 (615)
.. +-..-+++++.++|++ ++|.--|
T Consensus 169 ~i-------~~~al~~~~~~~~DvV-IIDTaGr 193 (428)
T TIGR00959 169 EI-------ARRALEYAKENGFDVV-IVDTAGR 193 (428)
T ss_pred HH-------HHHHHHHHHhcCCCEE-EEeCCCc
Confidence 21 1223344567788864 4566544
No 412
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.54 E-value=0.96 Score=46.08 Aligned_cols=34 Identities=18% Similarity=0.046 Sum_probs=29.0
Q ss_pred eeeccccccccCceeeccCCCCCCcchhhHHhhh
Q psy13480 230 RVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 230 rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
..-|.-+.+..|...+|.|+.|+|||+++.+++-
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556667788999999999999999999998765
No 413
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=91.54 E-value=0.1 Score=57.67 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=28.4
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|+.|+|||||+.+|+..-
T Consensus 22 vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 22 VDLSVREGSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred eEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34688999999999999999999999998753
No 414
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=91.53 E-value=0.11 Score=59.38 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=28.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+..|++++|.|+.|+|||||+..|+..
T Consensus 25 ~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~ 56 (556)
T PRK11819 25 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 56 (556)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478999999999999999999999999875
No 415
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=91.51 E-value=0.1 Score=57.69 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=29.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 46 ~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~ 78 (400)
T PRK10070 46 DASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI 78 (400)
T ss_pred eEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 445678899999999999999999999998764
No 416
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=91.49 E-value=0.11 Score=58.26 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=28.5
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 22 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 22 PSLTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34789999999999999999999999998753
No 417
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.47 E-value=0.097 Score=48.04 Aligned_cols=43 Identities=16% Similarity=0.421 Sum_probs=30.2
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHh
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRD 288 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~ 288 (615)
+.+.|++|||||+|.+.+|+..+.. ++.+-|.. ..+..+++-.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~-~~~i~~~~-~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRP-VIRINCSS-DTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCE-EEEEE-TT-TSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcc-eEEEEecc-ccccccceee
Confidence 5689999999999999999877554 44444443 4455577643
No 418
>PRK09087 hypothetical protein; Validated
Probab=91.46 E-value=0.71 Score=46.97 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=23.2
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
+.|.|++|+|||+|++.+++...+ .|+-..
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~~~---~~i~~~ 76 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKSDA---LLIHPN 76 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC---EEecHH
Confidence 579999999999999998876433 355444
No 419
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=91.45 E-value=0.11 Score=58.79 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=28.2
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|++++|.|+.|+|||||+..|+..
T Consensus 20 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 20 ISVKFGGGNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4478999999999999999999999999864
No 420
>PRK09165 replicative DNA helicase; Provisional
Probab=91.44 E-value=0.31 Score=55.27 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=36.4
Q ss_pred Cccccceeeecccc-ccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 223 YPLLTGQRVLDSLF-PCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 223 ~pl~TG~rviD~l~-Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.-+-||+.-+|-++ -+.+|+-+.|-|.+|+|||+++.++|.+
T Consensus 198 ~gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~ 240 (497)
T PRK09165 198 SGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFN 240 (497)
T ss_pred CcccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHH
Confidence 35789999999987 6889999999999999999999877643
No 421
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.38 E-value=0.5 Score=54.34 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.4
Q ss_pred eeccCCCCCCcchhhHHhhhcC
Q psy13480 244 TAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~ 265 (615)
..+.|++|+|||+++..+|++-
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999853
No 422
>PRK14531 adenylate kinase; Provisional
Probab=91.38 E-value=0.12 Score=50.29 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=26.0
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGE 277 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGE 277 (615)
+++.|.|++|+||||+.+.||+.-+ +.++-+|+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g---~~~is~gd 35 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG---LRHLSTGD 35 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CCeEeccc
Confidence 5789999999999999999987643 34555664
No 423
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.31 E-value=0.099 Score=59.76 Aligned_cols=32 Identities=31% Similarity=0.374 Sum_probs=28.6
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+-+|++++|.|++|+|||||++.|++.-
T Consensus 369 i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34789999999999999999999999998753
No 424
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.30 E-value=0.16 Score=49.68 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=26.4
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
+-.|+.++|.|+.|+||||++..|+..-..+
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~ 52 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIPPD 52 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 5579999999999999999999998765444
No 425
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.30 E-value=0.11 Score=58.49 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=28.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+..|+.++|.|++|+|||||+..|+..
T Consensus 23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 54 (510)
T PRK09700 23 SVNLTVYPGEIHALLGENGAGKSTLMKVLSGI 54 (510)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 44578899999999999999999999998865
No 426
>PRK06217 hypothetical protein; Validated
Probab=91.29 E-value=0.13 Score=49.93 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.2
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
.++.|.|.+|+||||+..+|++.-+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999976443
No 427
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=91.29 E-value=0.17 Score=54.11 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=29.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.-+-|-.|+.+++.||+|+|||||+..||---..|
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~ 55 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD 55 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC
Confidence 355567799999999999999999999998754333
No 428
>PRK14530 adenylate kinase; Provisional
Probab=91.26 E-value=0.13 Score=51.38 Aligned_cols=34 Identities=26% Similarity=0.193 Sum_probs=26.5
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
.|-++.|.|++|+||||+...||+.-+. .++-+|
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~---~~i~~g 35 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGV---EHVTTG 35 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC---eEEecc
Confidence 3558899999999999999999976543 344555
No 429
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=91.24 E-value=0.1 Score=59.17 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=28.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 27 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~ 58 (529)
T PRK15134 27 DVSLQIEAGETLALVGESGSGKSVTALSILRL 58 (529)
T ss_pred ceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 44578899999999999999999999998764
No 430
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.21 E-value=0.11 Score=49.69 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.5
Q ss_pred CceeeccCCCCCCcchhhHHhhhcC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|..++|.|++|+|||||++.|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6788999999999999999999853
No 431
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=91.21 E-value=0.12 Score=58.55 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=29.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.-|.+.+|++++|.|+.|+|||||+..|+...
T Consensus 337 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 369 (530)
T PRK15064 337 NLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL 369 (530)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355889999999999999999999999998653
No 432
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.20 E-value=0.11 Score=54.44 Aligned_cols=60 Identities=27% Similarity=0.473 Sum_probs=42.9
Q ss_pred eeeec-cccccccCceeeccCCCCCCcchhhHHhhhcCC--CCEEEEEeec-------CcchHHHHHHHh
Q psy13480 229 QRVLD-SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN--SDVIVYVGCG-------ERGNEMAEVLRD 288 (615)
Q Consensus 229 ~rviD-~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~--adviV~~~iG-------ERg~Ev~e~~~~ 288 (615)
++++| .=|.|.+|.+.|+.|.+||||||+...|.+--. ..-|.|-+-. ++-+.+.++++.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~ 95 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEK 95 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHH
Confidence 35555 678999999999999999999999999987543 2345555432 333445555554
No 433
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.20 E-value=0.94 Score=47.46 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=22.9
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..++..+++.|++|+||||++.-||.+
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 355678999999999999999988764
No 434
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.17 E-value=0.64 Score=54.78 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=26.6
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCC-EEEEEeecC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSD-VIVYVGCGE 277 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~ad-viV~~~iGE 277 (615)
+..++.|++|+|||++...+++.-++. ......||+
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 346899999999999999999964432 133456775
No 435
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.16 E-value=0.12 Score=58.23 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=29.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 281 ~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 355789999999999999999999999998753
No 436
>KOG2028|consensus
Probab=91.16 E-value=0.31 Score=53.35 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=36.6
Q ss_pred eeeccCCCCCCcchhhHHhhhcCCCC---EEEEEeecCcchHHHHHHHhcc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSNSD---VIVYVGCGERGNEMAEVLRDFP 290 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~ad---viV~~~iGERg~Ev~e~~~~f~ 290 (615)
.+.+-||+|||||+|.+.|++.+..- .|-.-+.--..++++++++.-+
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq 214 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQ 214 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHH
Confidence 35678999999999999999876555 3445566677788888886643
No 437
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.15 E-value=0.16 Score=54.31 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=32.0
Q ss_pred eeeecc-ccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 229 QRVLDS-LFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 229 ~rviD~-l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
++++|. =|.+.+|++.||.|.+||||||+.++|.+.-.
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 355554 47899999999999999999999999987544
No 438
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=91.09 E-value=0.12 Score=60.51 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=29.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+-+|++++|.|++|+|||||+..|++.-
T Consensus 492 ~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344789999999999999999999999998753
No 439
>KOG0743|consensus
Probab=91.07 E-value=0.28 Score=54.67 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=46.4
Q ss_pred eccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcch-HHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHH
Q psy13480 245 AIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGN-EMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321 (615)
Q Consensus 245 ~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~-Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R 321 (615)
++.||||||||++..+||++-+-||+..-+..-+.+ |.+.++..- -.|+|||.--=|.+...|
T Consensus 239 LLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t--------------~~kSIivIEDIDcs~~l~ 302 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLAT--------------PNKSILLIEDIDCSFDLR 302 (457)
T ss_pred eeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhC--------------CCCcEEEEeecccccccc
Confidence 578999999999999999999999988776554333 455555332 258899887766654433
No 440
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=91.07 E-value=0.11 Score=58.46 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=28.3
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 20 isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 20 IDLEVRPGECVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999999999999998653
No 441
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=91.07 E-value=0.12 Score=59.07 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=30.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
|.=|.+.+|++++|.|++|+|||||+..|++.-..
T Consensus 359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 45578999999999999999999999999886433
No 442
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=91.04 E-value=0.61 Score=46.49 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=29.5
Q ss_pred eeeccCCCCCCcchhhHHhhhc---CCCCEEEEEeecCcchHHHHHHHhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY---SNSDVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~---~~adviV~~~iGERg~Ev~e~~~~f 289 (615)
.+++.||.|+||||++.-||.+ .+.-+.++.+-.-|.--+ |-++.+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~-eQL~~~ 51 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAV-EQLKTY 51 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHH-HHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHH-HHHHHH
Confidence 4678999999999999887753 344455655555555433 444444
No 443
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=90.97 E-value=0.11 Score=58.66 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=28.2
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+..|+.++|.|++|+|||||+..|+...
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (506)
T PRK13549 24 VSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY 55 (506)
T ss_pred eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 35788999999999999999999999998643
No 444
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.92 E-value=0.24 Score=51.63 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=24.7
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEE
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVI 270 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~advi 270 (615)
+.+.+.|++|||||+|++.+|+....++.
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~~~~~ 59 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMGVNLK 59 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 44789999999999999999998777753
No 445
>PF13245 AAA_19: Part of AAA domain
Probab=90.90 E-value=0.16 Score=43.10 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=15.8
Q ss_pred CceeeccCCCCCCcchhhH-Hhhh
Q psy13480 241 GGTTAIPGAFGCGKTVISQ-ALSK 263 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~-~la~ 263 (615)
.+...|-||+|||||+++. .++.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 4445569999999995554 4443
No 446
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=90.90 E-value=0.11 Score=58.22 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=30.8
Q ss_pred eeec-cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 230 RVLD-SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 230 rviD-~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.+++ .=|.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 310 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY 310 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 3453 55789999999999999999999999998753
No 447
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=90.89 E-value=0.13 Score=59.82 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=28.6
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|++++|.|+.|+|||||+..|+...
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999999999999998753
No 448
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=90.89 E-value=0.13 Score=58.38 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=30.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+-+|++++|.|++|+|||||+..|+..-+.+
T Consensus 341 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~ 376 (547)
T PRK10522 341 PINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ 376 (547)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 444678899999999999999999999999864433
No 449
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=90.87 E-value=0.14 Score=57.82 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=30.0
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.=+.+.+|++++|.|++|+|||||+..|++.-+.+
T Consensus 341 i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~ 375 (529)
T TIGR02857 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT 375 (529)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34688999999999999999999999999865433
No 450
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=90.85 E-value=0.26 Score=56.18 Aligned_cols=58 Identities=22% Similarity=0.384 Sum_probs=46.6
Q ss_pred ccceeeeccccccccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHH
Q psy13480 226 LTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVL 286 (615)
Q Consensus 226 ~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~ 286 (615)
+-++|.||-+.=.-+|-.++|-|++||||||++..|++.-+ ..|+-.|.=.|.++.+.
T Consensus 269 ~g~~RLIDN~~~~~~~~ii~i~G~sgsGKst~a~~la~~l~---~~~~d~g~~YR~~a~~~ 326 (512)
T PRK13477 269 CGSTRLIDNVFLMKRQPIIAIDGPAGAGKSTVTRAVAKKLG---LLYLDTGAMYRAVTWLV 326 (512)
T ss_pred eCCeEEEeeeEeccCCcEEEEECCCCCCHHHHHHHHHHHcC---CeEecCCceehHHHHHH
Confidence 56789999776555899999999999999999999997643 56677787777776554
No 451
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=90.84 E-value=0.13 Score=59.98 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=29.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+-+|++++|.|++|+|||||+..|+..-+
T Consensus 471 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 471 DVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4457899999999999999999999999988643
No 452
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.82 E-value=0.14 Score=58.71 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=30.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|++++|.|++|+|||||+..|++.-+.+
T Consensus 358 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~ 393 (574)
T PRK11160 358 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ 393 (574)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 334688999999999999999999999999864433
No 453
>PRK00131 aroK shikimate kinase; Reviewed
Probab=90.80 E-value=0.17 Score=47.58 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.3
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
++..+.+.|++|||||++...||+..+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 5678899999999999999999987544
No 454
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.80 E-value=0.17 Score=49.47 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.6
Q ss_pred eeccCCCCCCcchhhHHhhhcC
Q psy13480 244 TAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+||.|++||||||++..|+..-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998753
No 455
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=90.79 E-value=0.14 Score=58.48 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=29.8
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
=|.+.+|++++|.|++|+|||||+..|++.-+.+
T Consensus 362 s~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~ 395 (555)
T TIGR01194 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395 (555)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4688999999999999999999999999865443
No 456
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=90.71 E-value=0.15 Score=53.91 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=30.4
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.=|.+.+|+..|+.|+.|+|||||+.+|+.....+
T Consensus 24 vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~ 58 (293)
T COG1131 24 VSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 45789999999999999999999999998765544
No 457
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=90.70 E-value=0.14 Score=59.48 Aligned_cols=33 Identities=36% Similarity=0.420 Sum_probs=29.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 34 ~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 34 NLSFSLQRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456789999999999999999999999998763
No 458
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=90.67 E-value=0.29 Score=53.80 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=23.8
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEE
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIV 271 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV 271 (615)
++|.||+|||||.++..+|+..++..++
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~ 178 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIV 178 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEE
Confidence 4579999999999999999988876443
No 459
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.66 E-value=0.29 Score=48.79 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=44.1
Q ss_pred eeccccccccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecCcchHHHHH
Q psy13480 231 VLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGERGNEMAEV 285 (615)
Q Consensus 231 viD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGERg~Ev~e~ 285 (615)
.-|.-|-+-.|+-.+|.|.+|+|||||+..|+... ++..+.|-.-+...+++..+
T Consensus 22 c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~m 78 (258)
T COG4107 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTM 78 (258)
T ss_pred ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhh
Confidence 44667888999999999999999999999998754 55568888777666665544
No 460
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=90.62 E-value=1.1 Score=43.28 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=23.1
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+|-.+.|.|.+|+||||+...|+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56778899999999999999999865
No 461
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.61 E-value=0.4 Score=57.17 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=41.9
Q ss_pred eeeccccccccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhc
Q psy13480 230 RVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 230 rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f 289 (615)
|.++.|-......-+.|.||+|.||||++.+..+..+ + +++.-+.+..++...|+..|
T Consensus 21 rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~~-~-~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 21 RLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGKN-N-LGWYSLDESDNQPERFASYL 78 (903)
T ss_pred HHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhCC-C-eEEEecCcccCCHHHHHHHH
Confidence 4555444455666789999999999999999776544 4 66668877777776665443
No 462
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=90.60 E-value=0.15 Score=58.37 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=29.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+-+|++++|.|++|+|||||++.|+..-+
T Consensus 333 ~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 333 NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred CeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3446788999999999999999999999987543
No 463
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.60 E-value=0.81 Score=44.39 Aligned_cols=84 Identities=21% Similarity=0.273 Sum_probs=56.0
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc-CCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCH
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY-SNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPV 318 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~-~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~ 318 (615)
||-.+-|.|-+|+|||||...+.+. .+..+-+|.+-|. ++.. .|. ..+ .-..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD---~lR~---~l~----------~dl-----------~fs~ 53 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD---NLRH---GLN----------ADL-----------GFSK 53 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH---HHCT---TTT----------TT-------------SSH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc---chhh---ccC----------CCC-----------CCCH
Confidence 5777889999999999999999764 3444678888774 2221 111 110 2345
Q ss_pred HHHHHHHHHHhhHHHHHHhCCCcEEEEeeCch
Q psy13480 319 AAREASIYTGITLSEYFRDMGYNVSMMADSTS 350 (615)
Q Consensus 319 ~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~t 350 (615)
..|..-+.-..-+|.-|.++|..|++-+-|.+
T Consensus 54 ~dR~e~~rr~~~~A~ll~~~G~ivIva~isp~ 85 (156)
T PF01583_consen 54 EDREENIRRIAEVAKLLADQGIIVIVAFISPY 85 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSEEEEE----S
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEeeccCc
Confidence 67888888888899999999998887776665
No 464
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.59 E-value=0.18 Score=48.27 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.4
Q ss_pred CceeeccCCCCCCcchhhHHhhhcC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.-.++|.|++||||||++..|++.-
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999653
No 465
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=90.57 E-value=0.15 Score=58.14 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=31.8
Q ss_pred eeeccccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 230 RVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 230 rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
.+=|.-|.+-+|++.+|.|++|||||||++.|+....+
T Consensus 336 ~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~ 373 (559)
T COG4988 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP 373 (559)
T ss_pred ccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 33456678999999999999999999999998876443
No 466
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.56 E-value=1 Score=51.37 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.2
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
+...+.|++|+|||++++.+|+.-++
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45789999999999999999986443
No 467
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=90.54 E-value=0.15 Score=57.42 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=29.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 270 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~ 303 (501)
T PRK10762 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP 303 (501)
T ss_pred cceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC
Confidence 4557899999999999999999999999987543
No 468
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=90.52 E-value=0.15 Score=56.02 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=31.0
Q ss_pred eeccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 231 VLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 231 viD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
+-|.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~ 75 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP 75 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345567899999999999999999999999987643
No 469
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=90.43 E-value=0.18 Score=50.31 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=26.3
Q ss_pred eeeccccccccCceeeccCCCCCCcchhhHHhh
Q psy13480 230 RVLDSLFPCVLGGTTAIPGAFGCGKTVISQALS 262 (615)
Q Consensus 230 rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la 262 (615)
..|| |.+..+|+..+|.|+.|+|||||+..|+
T Consensus 18 ~~i~-~~~~~~~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 18 QVID-FTGLDNNGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred eEEe-CCCCCccCEEEEECCCCCCHHHHHHHhe
Confidence 4556 4455679999999999999999998774
No 470
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=90.42 E-value=0.18 Score=49.83 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=23.8
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhh
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
.+.+|.+++|.|+.|+||||++.+|+.
T Consensus 25 ~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 25 NLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 445789999999999999999999873
No 471
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=90.42 E-value=0.16 Score=49.32 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=16.2
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-..|-||||||||+++..++..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHH
Confidence 4679999999999877766543
No 472
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=90.38 E-value=0.16 Score=59.46 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=29.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+-+|++++|.|++|+|||||+..|+..-+
T Consensus 483 ~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4457889999999999999999999999987543
No 473
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=90.34 E-value=0.15 Score=57.06 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=28.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 16 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 47 (491)
T PRK10982 16 NVNLKVRPHSIHALMGENGAGKSTLLKCLFGI 47 (491)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 34567889999999999999999999998764
No 474
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=90.34 E-value=0.5 Score=46.81 Aligned_cols=99 Identities=20% Similarity=0.305 Sum_probs=52.8
Q ss_pred ceeeccCCCCCCcchhhHHhhhc---CCCCEEEEEeecCcchHHHHH-----------HHhcccccccccCccccCcceE
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY---SNSDVIVYVGCGERGNEMAEV-----------LRDFPELTIEVDGVTESIMKRT 307 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~---~~adviV~~~iGERg~Ev~e~-----------~~~f~~l~~~~~g~~~~~m~rt 307 (615)
+...|.|++|||||+++..+.+. ....+++++..+.-..++.+- +...+...+ .+ ....-+++
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~--~~-~~~~~~~~ 95 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDD--EG-RPELPKKD 95 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEEC--CS-SCC-TSTS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccc--cc-cccCCccc
Confidence 45778899999999999987653 334566666666544443333 111111000 00 01145667
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCc
Q psy13480 308 TLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADST 349 (615)
Q Consensus 308 vlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~ 349 (615)
++|+--+.|-... ....+.++....|.+|+++-|.-
T Consensus 96 vliVDEasmv~~~------~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 96 VLIVDEASMVDSR------QLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp EEEESSGGG-BHH------HHHHHHHHS-T-T-EEEEEE-TT
T ss_pred EEEEecccccCHH------HHHHHHHHHHhcCCEEEEECCcc
Confidence 8888877773322 22333444455688899998865
No 475
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.31 E-value=0.26 Score=52.61 Aligned_cols=96 Identities=21% Similarity=0.279 Sum_probs=51.5
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC----C-CC---EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEE
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS----N-SD---VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVA 311 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~----~-ad---viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlva 311 (615)
+++.+.|.|++|+|||+++..+.+.. + .+ .++|+-|-+- +...+++.++-+.-.+ .|. . .
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~-~~~~~~~~~i~~~l~~-~~~--~--------~ 106 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL-DTLYQVLVELANQLRG-SGE--E--------V 106 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC-CCHHHHHHHHHHHHhh-cCC--C--------C
Confidence 44678999999999999998876531 1 11 3677777542 3333444443210000 010 0 0
Q ss_pred eCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHH
Q psy13480 312 NTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWA 353 (615)
Q Consensus 312 nTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~A 353 (615)
.....+...... .+-+++...+..++|++|..-..+
T Consensus 107 ~~~~~~~~~~~~------~l~~~l~~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 107 PTTGLSTSEVFR------RLYKELNERGDSLIIVLDEIDYLV 142 (365)
T ss_pred CCCCCCHHHHHH------HHHHHHHhcCCeEEEEECchhhhc
Confidence 011112221111 223445566889999999997554
No 476
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=90.30 E-value=0.16 Score=57.35 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=28.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 29 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34467899999999999999999999999764
No 477
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=90.30 E-value=0.17 Score=57.78 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=28.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|++++|.|+.|+|||||+..|+..
T Consensus 23 ~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~ 54 (552)
T TIGR03719 23 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 54 (552)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44578999999999999999999999999864
No 478
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=90.29 E-value=0.14 Score=57.59 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=31.2
Q ss_pred eeeec-cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 229 QRVLD-SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 229 ~rviD-~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++++ .=|.+.+|+.++|.|+.|+|||||+..|+..
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 311 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA 311 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 34565 4479999999999999999999999999875
No 479
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=90.28 E-value=0.16 Score=59.49 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+-+|++++|.|++|+|||||+..|+..-
T Consensus 497 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 497 NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344688999999999999999999999998753
No 480
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=90.25 E-value=0.16 Score=57.73 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=28.4
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+-+|++++|.|++|+|||||+..|+..-
T Consensus 360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 360 NLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4789999999999999999999999998753
No 481
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.23 E-value=0.17 Score=57.78 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=29.9
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
.=|.+-+|+++||.|++|+||||+..-|.++-+.
T Consensus 348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3455999999999999999999999999997655
No 482
>CHL00181 cbbX CbbX; Provisional
Probab=90.21 E-value=2.1 Score=45.23 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.9
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+|-.+.+.|++|||||+++..+++.
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34666788999999999999999774
No 483
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=90.20 E-value=0.17 Score=57.52 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.4
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|++++|.|++|+|||||+..|+..-
T Consensus 336 ~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 336 GISFRLQAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455788999999999999999999999998764
No 484
>KOG0056|consensus
Probab=90.20 E-value=0.35 Score=54.62 Aligned_cols=44 Identities=30% Similarity=0.396 Sum_probs=34.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCC--CEEEEEeec
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS--DVIVYVGCG 276 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a--dviV~~~iG 276 (615)
|.-|++..||++++.|++|+||||++.-+-++-|. ..|-+-+..
T Consensus 556 disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqd 601 (790)
T KOG0056|consen 556 DISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQD 601 (790)
T ss_pred cceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCch
Confidence 66789999999999999999999999999886433 334443433
No 485
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.19 E-value=0.49 Score=53.87 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.6
Q ss_pred ceeeccCCCCCCcchhhHHhhhcC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+...+.|++|+||||+++.+|++-
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 345889999999999999999864
No 486
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=90.18 E-value=0.16 Score=41.86 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.1
Q ss_pred eeccCCCCCCcchhhHHhhhc
Q psy13480 244 TAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~ 264 (615)
++|.|++|+|||++++.|++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999876
No 487
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=90.13 E-value=0.17 Score=44.63 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=20.6
Q ss_pred eeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
|+.|.|+.|+|||+|++.++.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 5789999999999999999876544
No 488
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=90.10 E-value=0.17 Score=49.47 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=24.2
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
.|..++|.|++|+||||+++.|+.....
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4889999999999999999999875433
No 489
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=90.09 E-value=0.17 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.5
Q ss_pred eeeccCCCCCCcchhhHHhhhcC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
++.|.|++|+||||++..||+.-
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999753
No 490
>PRK06762 hypothetical protein; Provisional
Probab=90.07 E-value=0.23 Score=47.06 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=23.6
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEE
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVY 272 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~ 272 (615)
..++|.|++||||||+.+.|++.-...++++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i 33 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLV 33 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEe
Confidence 3568899999999999999987653344333
No 491
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=90.06 E-value=0.17 Score=58.83 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=28.2
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.=|.+.+|++++|.|+.|+|||||+..|+..
T Consensus 338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~ 368 (635)
T PRK11147 338 FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ 368 (635)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999999999999875
No 492
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.06 E-value=0.22 Score=51.54 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=28.0
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhcCCCCEEEE
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVY 272 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~ 272 (615)
+..|..+.+.|++|||||++...+++..+..++.+
T Consensus 18 l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 18 LKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34577889999999999999999998666664443
No 493
>PRK03839 putative kinase; Provisional
Probab=90.04 E-value=0.18 Score=48.55 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=21.1
Q ss_pred eeeccCCCCCCcchhhHHhhhcCC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
++.|.|++|+||||+...||+.-+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998644
No 494
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.01 E-value=1.1 Score=50.16 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=29.7
Q ss_pred CceeeccCCCCCCcchhhHHhhhcC---CCCEEEEEeec-CcchHHHHHHHh
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYS---NSDVIVYVGCG-ERGNEMAEVLRD 288 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~---~adviV~~~iG-ERg~Ev~e~~~~ 288 (615)
-..+++.|+.|+||||++..||.+. ... +.++.|. .|. -..+-++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~k-V~lV~~D~~R~-aA~eQLk~ 149 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFK-PCLVCADTFRA-GAFDQLKQ 149 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCC-EEEEcCcccch-hHHHHHHH
Confidence 3578899999999999999998653 233 4444444 343 34444443
No 495
>PRK03846 adenylylsulfate kinase; Provisional
Probab=89.98 E-value=1.2 Score=43.83 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.0
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+|..++|.|.+|+|||||+..|++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46778899999999999999999874
No 496
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.95 E-value=0.3 Score=53.23 Aligned_cols=44 Identities=27% Similarity=0.473 Sum_probs=36.0
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEe-------ecCcchHHHHHHH
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVG-------CGERGNEMAEVLR 287 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~-------iGERg~Ev~e~~~ 287 (615)
+++-||+|||||.|+.+.|+..+|-.|=.+| +||-.+=|+|+.+
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~ 238 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFE 238 (406)
T ss_pred eEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHH
Confidence 5689999999999999999999998765554 6777777777664
No 497
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=89.87 E-value=0.18 Score=56.87 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=30.2
Q ss_pred eec-cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 231 VLD-SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 231 viD-~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+++ .=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~ 334 (520)
T TIGR03269 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 443 55789999999999999999999999998753
No 498
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=89.85 E-value=0.16 Score=57.55 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=30.4
Q ss_pred eeec-cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 230 RVLD-SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 230 rviD-~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.+++ .=|.+.+|+.++|.|++|+|||||+..|+...
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 336 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI 336 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3454 45689999999999999999999999998753
No 499
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=89.85 E-value=0.18 Score=57.98 Aligned_cols=35 Identities=34% Similarity=0.472 Sum_probs=29.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
|.=|.+.+|++++|.|++|+|||||+..|+..-..
T Consensus 353 ~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 387 (585)
T TIGR01192 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP 387 (585)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC
Confidence 34467889999999999999999999999986443
No 500
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=89.80 E-value=0.49 Score=52.26 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=25.5
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEE
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVY 272 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~ 272 (615)
..+++.|++|||||++++.+|+..++..+-+
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 3478999999999999999999877764433
Done!