Query psy13480
Match_columns 615
No_of_seqs 263 out of 1720
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 20:28:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr4_A V-type sodium ATPase ca 100.0 3E-157 9E-162 1297.3 52.9 582 17-614 10-592 (600)
2 3mfy_A V-type ATP synthase alp 100.0 2E-158 5E-163 1302.9 39.3 579 16-614 3-583 (588)
3 3gqb_A V-type ATP synthase alp 100.0 8E-155 3E-159 1273.3 45.8 573 17-613 3-577 (578)
4 3vr4_D V-type sodium ATPase su 100.0 1E-111 3E-116 918.4 42.6 420 15-544 10-442 (465)
5 3oaa_A ATP synthase subunit al 100.0 9E-112 3E-116 924.7 39.8 463 7-585 18-492 (513)
6 2c61_A A-type ATP synthase non 100.0 6E-112 2E-116 924.2 37.7 420 14-543 11-442 (469)
7 2r9v_A ATP synthase subunit al 100.0 5E-111 2E-115 921.5 41.6 478 5-610 28-513 (515)
8 3gqb_B V-type ATP synthase bet 100.0 4E-110 1E-114 905.7 39.3 420 14-544 5-444 (464)
9 2ck3_A ATP synthase subunit al 100.0 7E-110 3E-114 912.9 41.3 481 5-610 16-508 (510)
10 2qe7_A ATP synthase subunit al 100.0 7E-110 2E-114 911.8 39.1 457 5-585 16-481 (502)
11 1fx0_A ATP synthase alpha chai 100.0 5E-110 2E-114 913.7 31.5 481 5-610 17-501 (507)
12 2ck3_D ATP synthase subunit be 100.0 8E-108 3E-112 891.7 43.8 417 15-544 12-450 (482)
13 1fx0_B ATP synthase beta chain 100.0 2E-108 8E-113 899.1 37.1 415 17-544 20-463 (498)
14 1sky_E F1-ATPase, F1-ATP synth 100.0 6E-100 2E-104 831.0 41.3 416 17-544 3-442 (473)
15 2dpy_A FLII, flagellum-specifi 100.0 7.9E-72 2.7E-76 607.2 34.0 415 12-543 5-435 (438)
16 3l0o_A Transcription terminati 100.0 1.6E-72 5.4E-77 599.8 19.1 264 215-507 148-417 (427)
17 3ice_A Transcription terminati 100.0 1.7E-70 5.8E-75 585.1 18.0 272 201-505 134-414 (422)
18 2obl_A ESCN; ATPase, hydrolase 100.0 1.2E-65 3.9E-70 543.6 27.1 310 206-543 35-346 (347)
19 1v5w_A DMC1, meiotic recombina 97.3 0.00099 3.4E-08 69.6 10.5 121 222-355 101-234 (343)
20 4a74_A DNA repair and recombin 97.2 0.00071 2.4E-08 64.6 8.6 41 223-263 5-47 (231)
21 1n0w_A DNA repair protein RAD5 97.2 0.00062 2.1E-08 65.7 7.4 67 223-289 4-82 (243)
22 2ehv_A Hypothetical protein PH 97.1 0.0002 6.8E-09 69.4 3.5 64 224-287 11-79 (251)
23 2cvh_A DNA repair and recombin 97.1 0.00024 8.3E-09 67.5 3.6 63 225-288 2-68 (220)
24 2z43_A DNA repair and recombin 97.0 0.0013 4.4E-08 68.0 8.4 120 222-355 86-218 (324)
25 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00033 1.1E-08 66.7 3.1 65 224-288 4-72 (235)
26 2i1q_A DNA repair and recombin 96.9 0.0014 4.8E-08 67.2 7.3 120 222-355 77-219 (322)
27 3hr8_A Protein RECA; alpha and 96.8 0.001 3.5E-08 70.5 5.3 53 223-275 40-97 (356)
28 1pzn_A RAD51, DNA repair and r 96.8 0.0025 8.4E-08 66.9 8.0 118 222-354 110-245 (349)
29 3io5_A Recombination and repai 96.7 0.0013 4.4E-08 69.1 5.0 106 223-351 5-122 (333)
30 3lda_A DNA repair protein RAD5 96.4 0.0058 2E-07 65.6 8.2 41 222-262 157-199 (400)
31 2dr3_A UPF0273 protein PH0284; 96.4 0.0015 5E-08 63.0 3.0 64 224-287 4-71 (247)
32 2zr9_A Protein RECA, recombina 96.4 0.0039 1.3E-07 65.6 6.5 109 222-353 39-152 (349)
33 2zts_A Putative uncharacterize 96.4 0.0019 6.5E-08 62.3 3.7 65 224-288 11-80 (251)
34 1zp6_A Hypothetical protein AT 96.1 0.0028 9.4E-08 59.1 3.0 34 235-268 3-36 (191)
35 1xp8_A RECA protein, recombina 96.0 0.0061 2.1E-07 64.7 5.5 109 222-353 52-165 (366)
36 1u94_A RECA protein, recombina 95.9 0.0075 2.6E-07 63.7 5.9 54 222-275 41-99 (356)
37 3tr0_A Guanylate kinase, GMP k 95.3 0.006 2E-07 57.4 2.0 29 237-265 3-31 (205)
38 1cr0_A DNA primase/helicase; R 95.2 0.0055 1.9E-07 61.7 1.5 41 224-264 16-58 (296)
39 1znw_A Guanylate kinase, GMP k 95.2 0.0065 2.2E-07 58.1 1.9 29 237-265 16-44 (207)
40 3tif_A Uncharacterized ABC tra 95.0 0.0085 2.9E-07 59.3 2.4 36 233-268 23-58 (235)
41 1z6g_A Guanylate kinase; struc 95.0 0.0072 2.5E-07 58.7 1.8 32 234-265 16-47 (218)
42 3ec2_A DNA replication protein 94.9 0.01 3.4E-07 55.1 2.4 29 237-265 34-62 (180)
43 3ney_A 55 kDa erythrocyte memb 94.8 0.26 9E-06 47.8 12.4 28 237-264 15-42 (197)
44 4eun_A Thermoresistant glucoki 94.8 0.0096 3.3E-07 56.6 2.0 40 226-265 14-53 (200)
45 3pvs_A Replication-associated 94.7 0.018 6E-07 62.6 4.0 49 240-288 49-97 (447)
46 2pcj_A ABC transporter, lipopr 94.7 0.01 3.6E-07 58.2 1.9 36 233-268 22-57 (224)
47 1htw_A HI0065; nucleotide-bind 94.6 0.011 3.7E-07 55.3 1.7 31 235-265 27-57 (158)
48 2v1u_A Cell division control p 94.6 0.053 1.8E-06 55.3 7.0 92 239-354 42-144 (387)
49 1b0u_A Histidine permease; ABC 94.6 0.013 4.5E-07 59.0 2.4 36 233-268 24-59 (262)
50 4g1u_C Hemin import ATP-bindin 94.5 0.012 4.3E-07 59.4 2.2 34 234-267 30-63 (266)
51 2ff7_A Alpha-hemolysin translo 94.5 0.013 4.4E-07 58.5 2.2 36 233-268 27-62 (247)
52 3c8u_A Fructokinase; YP_612366 94.5 0.012 4.1E-07 56.3 2.0 27 238-264 19-45 (208)
53 3cmw_A Protein RECA, recombina 94.5 0.022 7.6E-07 71.0 4.7 111 222-355 12-127 (1706)
54 1g6h_A High-affinity branched- 94.5 0.014 4.9E-07 58.4 2.5 36 233-268 25-60 (257)
55 1fnn_A CDC6P, cell division co 94.5 0.087 3E-06 53.9 8.4 37 243-279 46-85 (389)
56 2cbz_A Multidrug resistance-as 94.5 0.012 3.9E-07 58.5 1.7 33 233-265 23-55 (237)
57 3lnc_A Guanylate kinase, GMP k 94.5 0.012 4.1E-07 57.0 1.8 29 236-264 22-51 (231)
58 1ixz_A ATP-dependent metallopr 94.4 0.02 7E-07 56.0 3.4 33 236-270 46-78 (254)
59 2j41_A Guanylate kinase; GMP, 94.4 0.014 4.8E-07 54.8 2.1 29 237-265 2-30 (207)
60 3gfo_A Cobalt import ATP-bindi 94.4 0.014 4.8E-07 59.4 2.2 36 233-268 26-61 (275)
61 1ji0_A ABC transporter; ATP bi 94.3 0.015 5.1E-07 57.7 2.2 36 233-268 24-59 (240)
62 2pze_A Cystic fibrosis transme 94.3 0.015 5.2E-07 57.2 2.2 36 233-268 26-61 (229)
63 1mv5_A LMRA, multidrug resista 94.3 0.015 5.1E-07 57.7 2.1 35 233-267 20-54 (243)
64 2olj_A Amino acid ABC transpor 94.3 0.016 5.4E-07 58.6 2.4 36 233-268 42-77 (263)
65 1sgw_A Putative ABC transporte 94.3 0.015 5E-07 57.1 2.0 36 233-268 27-62 (214)
66 3fvq_A Fe(3+) IONS import ATP- 94.3 0.014 4.9E-07 61.8 2.1 39 230-268 18-57 (359)
67 3cmu_A Protein RECA, recombina 94.3 0.036 1.2E-06 70.2 5.9 111 221-354 11-126 (2050)
68 3vaa_A Shikimate kinase, SK; s 94.2 0.016 5.6E-07 54.9 2.1 31 236-266 20-50 (199)
69 2ixe_A Antigen peptide transpo 94.2 0.017 5.9E-07 58.4 2.4 36 233-268 37-72 (271)
70 4gp7_A Metallophosphoesterase; 94.2 0.013 4.3E-07 54.7 1.3 27 236-262 4-30 (171)
71 1vpl_A ABC transporter, ATP-bi 94.2 0.018 6E-07 58.0 2.4 36 233-268 33-68 (256)
72 1nlf_A Regulatory protein REPA 94.2 0.0096 3.3E-07 59.6 0.4 43 221-263 9-52 (279)
73 2ihy_A ABC transporter, ATP-bi 94.2 0.017 5.7E-07 58.9 2.2 36 233-268 39-74 (279)
74 1w5s_A Origin recognition comp 94.2 0.023 7.9E-07 58.9 3.3 92 240-352 49-150 (412)
75 2qby_A CDC6 homolog 1, cell di 94.2 0.09 3.1E-06 53.5 7.6 94 239-353 43-141 (386)
76 3rlf_A Maltose/maltodextrin im 94.1 0.018 6.2E-07 61.5 2.4 36 233-268 21-56 (381)
77 2v9p_A Replication protein E1; 94.1 0.014 4.8E-07 60.5 1.5 33 233-265 118-150 (305)
78 2yyz_A Sugar ABC transporter, 94.1 0.019 6.4E-07 60.9 2.5 36 233-268 21-56 (359)
79 2yz2_A Putative ABC transporte 94.1 0.019 6.5E-07 57.9 2.4 36 233-268 25-60 (266)
80 2nq2_C Hypothetical ABC transp 94.1 0.018 6.2E-07 57.7 2.2 36 233-268 23-58 (253)
81 2it1_A 362AA long hypothetical 94.1 0.019 6.5E-07 60.9 2.4 36 233-268 21-56 (362)
82 2x8a_A Nuclear valosin-contain 94.1 0.021 7.2E-07 57.6 2.7 30 237-268 42-71 (274)
83 2d2e_A SUFC protein; ABC-ATPas 94.1 0.015 5.2E-07 58.0 1.6 32 233-264 21-52 (250)
84 1z47_A CYSA, putative ABC-tran 94.0 0.018 6.3E-07 60.8 2.3 36 233-268 33-68 (355)
85 2jeo_A Uridine-cytidine kinase 94.0 0.017 5.7E-07 56.8 1.8 30 235-264 19-48 (245)
86 2zu0_C Probable ATP-dependent 94.0 0.016 5.5E-07 58.5 1.7 32 233-264 38-69 (267)
87 2ghi_A Transport protein; mult 94.0 0.016 5.4E-07 58.3 1.7 33 234-266 39-71 (260)
88 2qi9_C Vitamin B12 import ATP- 94.0 0.017 5.7E-07 57.9 1.8 36 233-268 18-53 (249)
89 1v43_A Sugar-binding transport 94.0 0.02 7E-07 60.9 2.4 36 233-268 29-64 (372)
90 1pui_A ENGB, probable GTP-bind 94.0 0.013 4.6E-07 54.9 0.9 34 230-264 16-49 (210)
91 1lvg_A Guanylate kinase, GMP k 93.9 0.017 5.6E-07 55.2 1.5 26 239-264 2-27 (198)
92 1kgd_A CASK, peripheral plasma 93.9 0.019 6.5E-07 53.7 1.9 26 240-265 4-29 (180)
93 1g29_1 MALK, maltose transport 93.9 0.02 6.9E-07 60.8 2.3 36 233-268 21-56 (372)
94 2p5t_B PEZT; postsegregational 93.8 0.16 5.4E-06 50.1 8.5 31 237-267 28-58 (253)
95 3nh6_A ATP-binding cassette SU 93.8 0.015 5.2E-07 60.2 1.1 36 233-268 72-107 (306)
96 3uk6_A RUVB-like 2; hexameric 93.8 0.098 3.3E-06 53.7 7.1 36 241-276 70-106 (368)
97 2eyu_A Twitching motility prot 93.8 0.016 5.5E-07 58.3 1.1 33 231-264 16-48 (261)
98 3bh0_A DNAB-like replicative h 93.7 0.025 8.6E-07 58.2 2.4 61 223-283 49-112 (315)
99 3b85_A Phosphate starvation-in 93.6 0.02 6.7E-07 55.8 1.5 31 231-264 15-45 (208)
100 3d31_A Sulfate/molybdate ABC t 93.6 0.017 5.9E-07 60.9 1.1 36 233-268 18-53 (348)
101 3asz_A Uridine kinase; cytidin 93.5 0.02 6.8E-07 54.3 1.3 27 238-264 3-29 (211)
102 1njg_A DNA polymerase III subu 93.5 0.11 3.7E-06 48.4 6.4 22 243-264 47-68 (250)
103 3tau_A Guanylate kinase, GMP k 93.5 0.03 1E-06 53.7 2.4 29 239-267 6-34 (208)
104 1iy2_A ATP-dependent metallopr 93.4 0.036 1.2E-06 55.3 2.9 32 236-269 70-101 (278)
105 3gd7_A Fusion complex of cysti 93.4 0.022 7.4E-07 61.0 1.4 34 233-266 39-72 (390)
106 2kjq_A DNAA-related protein; s 93.4 0.028 9.5E-07 51.7 1.9 25 240-264 35-59 (149)
107 3tui_C Methionine import ATP-b 93.3 0.031 1E-06 59.5 2.4 39 230-268 42-81 (366)
108 1oxx_K GLCV, glucose, ABC tran 93.3 0.017 5.9E-07 60.9 0.4 36 233-268 23-58 (353)
109 1kag_A SKI, shikimate kinase I 93.2 0.033 1.1E-06 50.9 2.2 27 240-266 3-29 (173)
110 1c9k_A COBU, adenosylcobinamid 93.2 0.038 1.3E-06 53.2 2.6 44 244-289 2-46 (180)
111 1y63_A LMAJ004144AAA protein; 93.1 0.035 1.2E-06 52.0 2.2 28 237-264 6-33 (184)
112 2bbs_A Cystic fibrosis transme 93.1 0.026 8.8E-07 57.9 1.3 34 233-266 56-89 (290)
113 2pjz_A Hypothetical protein ST 92.9 0.036 1.2E-06 56.0 2.1 33 234-268 24-56 (263)
114 3a00_A Guanylate kinase, GMP k 92.9 0.032 1.1E-06 52.3 1.7 25 241-265 1-25 (186)
115 2vhj_A Ntpase P4, P4; non- hyd 92.8 0.043 1.5E-06 57.7 2.6 43 222-264 103-146 (331)
116 3uie_A Adenylyl-sulfate kinase 92.8 0.034 1.2E-06 52.7 1.7 27 238-264 22-48 (200)
117 3dm5_A SRP54, signal recogniti 92.8 0.21 7.2E-06 54.4 8.0 90 240-348 99-190 (443)
118 1zu4_A FTSY; GTPase, signal re 92.8 0.35 1.2E-05 50.1 9.4 46 236-281 100-147 (320)
119 2vp4_A Deoxynucleoside kinase; 92.7 0.058 2E-06 52.5 3.2 28 237-264 16-43 (230)
120 1s96_A Guanylate kinase, GMP k 92.6 0.04 1.4E-06 54.0 2.0 29 238-266 13-41 (219)
121 2qt1_A Nicotinamide riboside k 92.6 0.036 1.2E-06 52.5 1.6 29 237-265 17-45 (207)
122 1knq_A Gluconate kinase; ALFA/ 92.6 0.04 1.4E-06 50.6 1.8 26 239-264 6-31 (175)
123 1u0l_A Probable GTPase ENGC; p 92.5 0.029 1E-06 57.3 0.9 42 226-268 155-196 (301)
124 3aez_A Pantothenate kinase; tr 92.5 0.041 1.4E-06 56.9 2.0 28 237-264 86-113 (312)
125 3bs4_A Uncharacterized protein 92.5 0.42 1.4E-05 48.3 9.3 65 225-289 3-71 (260)
126 2yv5_A YJEQ protein; hydrolase 92.4 0.035 1.2E-06 56.9 1.3 35 232-267 156-190 (302)
127 2i3b_A HCR-ntpase, human cance 92.4 0.039 1.3E-06 52.9 1.5 24 241-264 1-24 (189)
128 2bdt_A BH3686; alpha-beta prot 92.3 0.046 1.6E-06 50.9 1.9 24 241-264 2-25 (189)
129 1sq5_A Pantothenate kinase; P- 92.3 0.025 8.7E-07 57.9 0.1 28 237-264 76-103 (308)
130 2onk_A Molybdate/tungstate ABC 92.3 0.053 1.8E-06 53.9 2.4 37 231-268 15-51 (240)
131 1t9h_A YLOQ, probable GTPase E 92.2 0.019 6.5E-07 59.6 -1.0 34 232-265 164-197 (307)
132 2qor_A Guanylate kinase; phosp 92.2 0.049 1.7E-06 51.8 1.9 28 238-265 9-36 (204)
133 3cmw_A Protein RECA, recombina 92.2 0.12 4.2E-06 64.5 5.8 61 222-282 361-426 (1706)
134 1tf7_A KAIC; homohexamer, hexa 92.1 0.049 1.7E-06 59.9 2.1 38 224-261 20-59 (525)
135 4b4t_J 26S protease regulatory 92.1 0.066 2.2E-06 57.7 3.0 30 244-273 185-214 (405)
136 1in4_A RUVB, holliday junction 92.1 0.064 2.2E-06 55.3 2.8 46 242-287 52-98 (334)
137 2r6a_A DNAB helicase, replicat 92.0 0.035 1.2E-06 59.9 0.8 60 223-282 184-247 (454)
138 3n70_A Transport activator; si 92.0 0.17 5.9E-06 45.5 5.3 92 240-354 23-119 (145)
139 2z4s_A Chromosomal replication 91.9 0.14 4.8E-06 55.1 5.3 36 241-277 130-170 (440)
140 3h4m_A Proteasome-activating n 91.9 0.079 2.7E-06 52.4 3.1 31 239-269 49-79 (285)
141 1cke_A CK, MSSA, protein (cyti 91.9 0.058 2E-06 51.4 2.0 24 241-264 5-28 (227)
142 1lw7_A Transcriptional regulat 91.8 0.043 1.5E-06 57.3 1.2 32 237-268 164-197 (365)
143 3cf0_A Transitional endoplasmi 91.8 0.074 2.5E-06 54.0 2.8 35 239-274 47-81 (301)
144 3b9q_A Chloroplast SRP recepto 91.8 0.055 1.9E-06 55.7 1.9 41 236-276 95-137 (302)
145 1rj9_A FTSY, signal recognitio 91.7 0.084 2.9E-06 54.4 3.2 38 239-276 100-139 (304)
146 3cmu_A Protein RECA, recombina 91.7 0.098 3.3E-06 66.3 4.2 109 222-353 361-474 (2050)
147 3b9p_A CG5977-PA, isoform A; A 91.7 0.091 3.1E-06 52.4 3.3 35 241-276 54-88 (297)
148 4e22_A Cytidylate kinase; P-lo 91.6 0.062 2.1E-06 53.3 1.9 26 239-264 25-50 (252)
149 3cm0_A Adenylate kinase; ATP-b 91.6 0.051 1.8E-06 50.2 1.3 26 239-264 2-27 (186)
150 2gza_A Type IV secretion syste 91.6 0.048 1.7E-06 57.3 1.2 34 235-268 169-202 (361)
151 4b4t_L 26S protease subunit RP 91.5 0.087 3E-06 57.2 3.1 29 244-272 218-246 (437)
152 3j16_B RLI1P; ribosome recycli 91.5 0.09 3.1E-06 59.4 3.3 34 231-264 93-126 (608)
153 1z6t_A APAF-1, apoptotic prote 91.4 0.22 7.5E-06 54.6 6.3 39 240-278 146-190 (591)
154 2yl4_A ATP-binding cassette SU 91.4 0.078 2.7E-06 59.2 2.7 36 233-268 362-397 (595)
155 1ye8_A Protein THEP1, hypothet 91.4 0.062 2.1E-06 50.8 1.6 23 243-265 2-24 (178)
156 2qm8_A GTPase/ATPase; G protei 91.4 0.06 2E-06 56.1 1.6 35 230-264 43-78 (337)
157 2npi_A Protein CLP1; CLP1-PCF1 91.4 0.052 1.8E-06 59.2 1.2 32 234-265 131-162 (460)
158 3qf4_B Uncharacterized ABC tra 91.3 0.082 2.8E-06 59.2 2.8 35 234-268 374-408 (598)
159 3iij_A Coilin-interacting nucl 91.3 0.069 2.3E-06 49.3 1.8 28 239-266 9-36 (180)
160 1lv7_A FTSH; alpha/beta domain 91.3 0.08 2.7E-06 51.9 2.3 31 244-275 48-78 (257)
161 4b4t_K 26S protease regulatory 91.2 0.099 3.4E-06 56.6 3.2 29 244-272 209-237 (428)
162 4a82_A Cystic fibrosis transme 91.2 0.065 2.2E-06 59.7 1.8 36 233-268 359-394 (578)
163 1qhx_A CPT, protein (chloramph 91.2 0.11 3.8E-06 47.5 3.1 28 241-268 3-30 (178)
164 3e70_C DPA, signal recognition 91.1 0.28 9.7E-06 51.0 6.5 41 237-277 125-167 (328)
165 2bbw_A Adenylate kinase 4, AK4 91.1 0.072 2.5E-06 52.1 1.9 25 240-264 26-50 (246)
166 3b5x_A Lipid A export ATP-bind 91.1 0.079 2.7E-06 59.1 2.4 36 233-268 361-396 (582)
167 1l8q_A Chromosomal replication 91.1 0.092 3.1E-06 53.3 2.7 37 240-277 36-75 (324)
168 2pt7_A CAG-ALFA; ATPase, prote 91.0 0.055 1.9E-06 56.3 1.0 33 236-268 166-198 (330)
169 1vma_A Cell division protein F 91.0 0.35 1.2E-05 49.8 7.0 43 237-279 100-144 (306)
170 1rz3_A Hypothetical protein rb 91.0 0.07 2.4E-06 50.7 1.6 28 237-264 18-45 (201)
171 1zuh_A Shikimate kinase; alpha 91.0 0.08 2.7E-06 48.3 1.9 26 242-267 8-33 (168)
172 3t15_A Ribulose bisphosphate c 91.0 0.085 2.9E-06 53.5 2.3 32 244-276 39-70 (293)
173 3b60_A Lipid A export ATP-bind 90.9 0.076 2.6E-06 59.2 2.0 36 233-268 361-396 (582)
174 1yqt_A RNAse L inhibitor; ATP- 90.8 0.12 3.9E-06 57.5 3.3 34 231-264 37-70 (538)
175 4b4t_M 26S protease regulatory 90.8 0.094 3.2E-06 56.9 2.5 29 244-272 218-246 (434)
176 2wwf_A Thymidilate kinase, put 90.7 0.084 2.9E-06 49.6 1.8 27 238-264 7-33 (212)
177 1tf7_A KAIC; homohexamer, hexa 90.7 0.13 4.3E-06 56.6 3.5 61 223-283 261-325 (525)
178 3bos_A Putative DNA replicatio 90.7 0.087 3E-06 49.8 1.9 38 239-276 50-89 (242)
179 1jbk_A CLPB protein; beta barr 90.7 0.094 3.2E-06 47.2 2.1 26 239-264 41-66 (195)
180 2q6t_A DNAB replication FORK h 90.6 0.063 2.2E-06 57.8 0.9 60 223-282 181-244 (444)
181 1kht_A Adenylate kinase; phosp 90.6 0.091 3.1E-06 48.3 1.9 25 240-264 2-26 (192)
182 4b4t_H 26S protease regulatory 90.5 0.13 4.4E-06 56.4 3.3 29 244-272 246-274 (467)
183 2qp9_X Vacuolar protein sortin 90.5 0.26 8.9E-06 51.3 5.5 28 242-269 85-112 (355)
184 3kl4_A SRP54, signal recogniti 90.5 0.35 1.2E-05 52.4 6.6 48 240-288 96-146 (433)
185 1q57_A DNA primase/helicase; d 90.5 0.071 2.4E-06 58.1 1.2 61 223-283 222-287 (503)
186 3qf4_A ABC transporter, ATP-bi 90.4 0.089 3.1E-06 58.8 2.0 35 234-268 362-396 (587)
187 2og2_A Putative signal recogni 90.3 0.092 3.2E-06 55.5 1.9 41 236-276 152-194 (359)
188 3kb2_A SPBC2 prophage-derived 90.3 0.091 3.1E-06 47.4 1.6 22 243-264 3-24 (173)
189 2qz4_A Paraplegin; AAA+, SPG7, 90.3 0.13 4.4E-06 50.0 2.7 34 242-276 40-73 (262)
190 3trf_A Shikimate kinase, SK; a 90.2 0.11 3.7E-06 48.0 2.0 27 241-267 5-31 (185)
191 2vli_A Antibiotic resistance p 90.2 0.13 4.3E-06 47.2 2.5 29 240-268 4-32 (183)
192 1ukz_A Uridylate kinase; trans 90.1 0.12 4.3E-06 48.4 2.5 25 242-266 16-40 (203)
193 2yvu_A Probable adenylyl-sulfa 90.1 0.1 3.5E-06 48.5 1.8 32 233-264 5-36 (186)
194 2pez_A Bifunctional 3'-phospho 90.1 0.098 3.4E-06 48.3 1.7 25 240-264 4-28 (179)
195 1nn5_A Similar to deoxythymidy 90.0 0.098 3.3E-06 49.2 1.6 27 238-264 6-32 (215)
196 4b4t_I 26S protease regulatory 90.0 0.15 5.1E-06 55.5 3.2 30 244-273 219-248 (437)
197 2yhs_A FTSY, cell division pro 90.0 0.1 3.5E-06 57.7 2.0 30 235-264 287-316 (503)
198 3dl0_A Adenylate kinase; phosp 90.0 0.13 4.3E-06 48.9 2.4 24 243-266 2-25 (216)
199 2ewv_A Twitching motility prot 90.0 0.096 3.3E-06 55.3 1.7 27 238-264 133-159 (372)
200 2plr_A DTMP kinase, probable t 89.9 0.13 4.4E-06 48.1 2.3 25 240-264 3-27 (213)
201 3ozx_A RNAse L inhibitor; ATP 89.8 0.11 3.9E-06 57.6 2.2 30 236-265 289-318 (538)
202 3bk7_A ABC transporter ATP-bin 89.8 0.15 5.3E-06 57.4 3.3 34 231-264 107-140 (607)
203 1xwi_A SKD1 protein; VPS4B, AA 89.8 0.18 6E-06 51.9 3.4 35 242-276 46-80 (322)
204 3nwj_A ATSK2; P loop, shikimat 89.7 0.078 2.7E-06 53.1 0.7 31 234-264 38-71 (250)
205 3pfi_A Holliday junction ATP-d 89.7 0.34 1.2E-05 49.2 5.5 47 242-288 56-103 (338)
206 4a1f_A DNAB helicase, replicat 89.6 0.1 3.5E-06 54.7 1.6 42 223-264 27-69 (338)
207 3kta_A Chromosome segregation 89.6 0.098 3.3E-06 48.3 1.3 27 236-263 22-48 (182)
208 2rhm_A Putative kinase; P-loop 89.6 0.11 3.9E-06 47.9 1.7 27 240-266 4-30 (193)
209 1yqt_A RNAse L inhibitor; ATP- 89.5 0.13 4.3E-06 57.1 2.3 28 238-265 309-336 (538)
210 2v54_A DTMP kinase, thymidylat 89.5 0.13 4.6E-06 47.9 2.1 26 240-265 3-28 (204)
211 3fb4_A Adenylate kinase; psych 89.5 0.12 4.1E-06 49.0 1.8 23 243-265 2-24 (216)
212 3bgw_A DNAB-like replicative h 89.5 0.096 3.3E-06 56.7 1.3 61 223-283 178-241 (444)
213 3zvl_A Bifunctional polynucleo 89.4 0.67 2.3E-05 49.4 7.7 123 239-385 256-380 (416)
214 1jjv_A Dephospho-COA kinase; P 89.4 0.17 5.7E-06 47.7 2.7 21 243-263 4-24 (206)
215 2c95_A Adenylate kinase 1; tra 89.4 0.11 3.7E-06 48.2 1.3 27 239-265 7-33 (196)
216 2p65_A Hypothetical protein PF 89.3 0.11 3.7E-06 47.0 1.3 26 239-264 41-66 (187)
217 2if2_A Dephospho-COA kinase; a 89.2 0.13 4.4E-06 48.3 1.8 21 243-263 3-23 (204)
218 2dhr_A FTSH; AAA+ protein, hex 89.2 0.17 6E-06 55.7 3.1 30 237-268 62-91 (499)
219 1svm_A Large T antigen; AAA+ f 89.1 0.11 3.8E-06 55.3 1.3 30 236-265 164-193 (377)
220 2z0h_A DTMP kinase, thymidylat 89.1 0.23 8E-06 45.9 3.4 22 244-265 3-24 (197)
221 1tev_A UMP-CMP kinase; ploop, 89.1 0.12 4.1E-06 47.5 1.4 26 241-266 3-28 (196)
222 1ofh_A ATP-dependent HSL prote 89.0 0.16 5.5E-06 50.3 2.4 36 240-276 49-84 (310)
223 4eaq_A DTMP kinase, thymidylat 89.0 0.22 7.7E-06 48.7 3.4 30 237-266 22-51 (229)
224 1d2n_A N-ethylmaleimide-sensit 88.9 0.16 5.5E-06 50.1 2.3 31 240-270 63-93 (272)
225 2iyv_A Shikimate kinase, SK; t 88.8 0.15 5E-06 47.1 1.8 25 242-266 3-27 (184)
226 2rcn_A Probable GTPase ENGC; Y 88.7 0.1 3.6E-06 55.2 0.9 35 232-266 206-240 (358)
227 3bk7_A ABC transporter ATP-bin 88.7 0.16 5.3E-06 57.4 2.3 29 238-266 379-407 (607)
228 3jvv_A Twitching mobility prot 88.7 0.14 4.8E-06 53.9 1.8 28 237-264 119-146 (356)
229 3vfd_A Spastin; ATPase, microt 88.7 0.2 6.9E-06 52.5 3.0 35 241-276 148-182 (389)
230 3eie_A Vacuolar protein sortin 88.6 0.15 5E-06 52.2 1.8 33 242-275 52-84 (322)
231 3lw7_A Adenylate kinase relate 88.6 0.16 5.3E-06 45.5 1.8 19 243-261 3-21 (179)
232 1jr3_A DNA polymerase III subu 88.5 1.2 4.2E-05 45.2 8.7 23 243-265 40-62 (373)
233 2r62_A Cell division protease 88.5 0.13 4.4E-06 50.5 1.2 25 244-268 47-71 (268)
234 4f4c_A Multidrug resistance pr 88.4 0.17 5.9E-06 61.9 2.5 35 234-268 1098-1132(1321)
235 1gvn_B Zeta; postsegregational 88.3 0.2 6.9E-06 50.8 2.6 30 237-266 29-58 (287)
236 3t61_A Gluconokinase; PSI-biol 88.3 0.18 6E-06 47.5 2.0 23 243-265 20-42 (202)
237 2oap_1 GSPE-2, type II secreti 88.3 0.16 5.4E-06 56.1 1.9 33 236-268 255-287 (511)
238 1ly1_A Polynucleotide kinase; 88.2 0.16 5.4E-06 46.2 1.6 21 243-263 4-24 (181)
239 3ozx_A RNAse L inhibitor; ATP 88.2 0.19 6.6E-06 55.8 2.6 27 238-264 22-48 (538)
240 1uf9_A TT1252 protein; P-loop, 88.2 0.2 7E-06 46.5 2.4 23 242-264 9-31 (203)
241 2qag_B Septin-6, protein NEDD5 88.2 0.17 5.9E-06 54.8 2.1 32 233-264 32-65 (427)
242 1zd8_A GTP:AMP phosphotransfer 88.2 0.17 5.7E-06 48.8 1.8 28 239-266 5-32 (227)
243 2bwj_A Adenylate kinase 5; pho 88.1 0.13 4.5E-06 47.7 1.0 28 239-266 10-37 (199)
244 3co5_A Putative two-component 88.1 0.12 4E-06 46.6 0.6 35 241-277 27-61 (143)
245 2jaq_A Deoxyguanosine kinase; 88.1 0.16 5.6E-06 47.1 1.6 25 243-267 2-26 (205)
246 2cdn_A Adenylate kinase; phosp 88.0 0.19 6.6E-06 47.2 2.1 25 242-266 21-45 (201)
247 2bjv_A PSP operon transcriptio 88.0 0.38 1.3E-05 47.2 4.3 41 241-281 29-71 (265)
248 3m6a_A ATP-dependent protease 87.8 0.18 6.2E-06 55.8 2.0 30 240-269 107-136 (543)
249 1aky_A Adenylate kinase; ATP:A 87.8 0.18 6.1E-06 48.2 1.7 27 240-266 3-29 (220)
250 1m7g_A Adenylylsulfate kinase; 87.8 0.18 6E-06 48.1 1.7 27 238-264 22-48 (211)
251 3hws_A ATP-dependent CLP prote 87.8 0.25 8.7E-06 51.1 3.0 35 241-276 51-85 (363)
252 1ypw_A Transitional endoplasmi 87.7 0.32 1.1E-05 56.5 4.1 37 237-274 234-270 (806)
253 1j8m_F SRP54, signal recogniti 87.7 0.9 3.1E-05 46.4 7.1 48 240-287 97-146 (297)
254 3u61_B DNA polymerase accessor 87.6 0.26 8.8E-06 49.8 2.9 45 245-289 52-96 (324)
255 2pt5_A Shikimate kinase, SK; a 87.6 0.2 6.8E-06 45.3 1.9 24 243-266 2-25 (168)
256 1via_A Shikimate kinase; struc 87.5 0.18 6.1E-06 46.3 1.5 23 243-265 6-28 (175)
257 2qen_A Walker-type ATPase; unk 87.5 0.26 8.8E-06 49.4 2.8 33 241-276 31-63 (350)
258 2ffh_A Protein (FFH); SRP54, s 87.4 0.94 3.2E-05 48.9 7.3 47 240-286 97-145 (425)
259 2w58_A DNAI, primosome compone 87.4 0.2 6.9E-06 46.9 1.8 35 242-276 55-91 (202)
260 2ze6_A Isopentenyl transferase 87.4 0.19 6.4E-06 49.9 1.6 25 243-267 3-27 (253)
261 2chg_A Replication factor C sm 87.3 0.21 7.1E-06 46.1 1.8 23 242-264 39-61 (226)
262 1odf_A YGR205W, hypothetical 3 87.3 0.19 6.6E-06 51.3 1.8 27 238-264 28-54 (290)
263 3ux8_A Excinuclease ABC, A sub 87.1 0.16 5.3E-06 57.6 1.0 30 233-262 340-369 (670)
264 2iw3_A Elongation factor 3A; a 87.0 0.18 6.3E-06 59.9 1.6 31 233-263 453-483 (986)
265 2gj8_A MNME, tRNA modification 87.0 0.19 6.4E-06 46.1 1.3 26 240-265 3-28 (172)
266 1hqc_A RUVB; extended AAA-ATPa 87.0 0.26 9E-06 49.4 2.5 33 242-275 39-71 (324)
267 1nks_A Adenylate kinase; therm 86.9 0.19 6.5E-06 46.1 1.3 22 243-264 3-24 (194)
268 1e6c_A Shikimate kinase; phosp 86.9 0.19 6.5E-06 45.6 1.3 24 243-266 4-27 (173)
269 3d8b_A Fidgetin-like protein 1 86.8 0.31 1.1E-05 50.7 3.0 34 241-275 117-150 (357)
270 1p9r_A General secretion pathw 86.7 0.2 6.9E-06 53.9 1.5 33 231-264 158-190 (418)
271 3a4m_A L-seryl-tRNA(SEC) kinas 86.6 0.33 1.1E-05 48.1 2.9 25 240-264 3-27 (260)
272 1q3t_A Cytidylate kinase; nucl 86.5 0.26 8.8E-06 47.9 2.1 25 240-264 15-39 (236)
273 3be4_A Adenylate kinase; malar 86.5 0.21 7.1E-06 47.9 1.4 27 240-266 4-30 (217)
274 2pbr_A DTMP kinase, thymidylat 86.4 0.24 8.1E-06 45.6 1.7 22 243-264 2-23 (195)
275 2ce7_A Cell division protein F 86.2 0.3 1E-05 53.5 2.6 31 244-275 52-82 (476)
276 3g5u_A MCG1178, multidrug resi 86.1 0.25 8.7E-06 60.2 2.2 35 234-268 409-443 (1284)
277 3sfz_A APAF-1, apoptotic pepti 86.1 1 3.4E-05 53.1 7.2 37 242-278 148-190 (1249)
278 2f9l_A RAB11B, member RAS onco 86.0 0.25 8.6E-06 46.0 1.6 22 243-264 7-28 (199)
279 3g5u_A MCG1178, multidrug resi 85.9 0.3 1E-05 59.6 2.7 36 233-268 1051-1086(1284)
280 4fcw_A Chaperone protein CLPB; 85.8 0.3 1E-05 48.7 2.2 37 242-278 48-86 (311)
281 3syl_A Protein CBBX; photosynt 85.8 0.28 9.6E-06 48.9 2.0 25 240-264 66-90 (309)
282 4b3f_X DNA-binding protein smu 85.8 0.58 2E-05 52.6 4.7 22 241-262 205-226 (646)
283 1e4v_A Adenylate kinase; trans 85.8 0.24 8.4E-06 47.1 1.5 24 243-266 2-25 (214)
284 2zan_A Vacuolar protein sortin 85.7 0.38 1.3E-05 51.8 3.1 35 242-276 168-202 (444)
285 2r44_A Uncharacterized protein 85.6 0.25 8.7E-06 50.1 1.6 30 240-269 45-74 (331)
286 3cr8_A Sulfate adenylyltranfer 85.6 0.18 6.2E-06 56.2 0.5 28 237-264 365-392 (552)
287 3r20_A Cytidylate kinase; stru 85.6 0.26 8.9E-06 49.0 1.6 38 242-282 10-47 (233)
288 3sop_A Neuronal-specific septi 85.5 0.24 8E-06 50.0 1.2 23 243-265 4-26 (270)
289 2grj_A Dephospho-COA kinase; T 85.4 0.26 9E-06 47.2 1.5 22 243-264 14-35 (192)
290 1ak2_A Adenylate kinase isoenz 85.4 0.29 1E-05 47.4 1.8 25 242-266 17-41 (233)
291 1vht_A Dephospho-COA kinase; s 85.4 0.36 1.2E-05 45.9 2.4 23 241-263 4-26 (218)
292 1sxj_A Activator 1 95 kDa subu 85.4 0.45 1.6E-05 52.1 3.5 36 241-277 77-112 (516)
293 1qf9_A UMP/CMP kinase, protein 85.3 0.27 9.3E-06 45.0 1.5 24 242-265 7-30 (194)
294 1oix_A RAS-related protein RAB 85.3 0.25 8.7E-06 46.0 1.3 23 243-265 31-53 (191)
295 1ls1_A Signal recognition part 85.3 1.2 4E-05 45.4 6.3 45 240-284 97-143 (295)
296 3ake_A Cytidylate kinase; CMP 85.2 0.29 9.8E-06 45.7 1.6 22 243-264 4-25 (208)
297 1zak_A Adenylate kinase; ATP:A 85.2 0.26 8.8E-06 47.2 1.3 27 240-266 4-30 (222)
298 3euj_A Chromosome partition pr 85.0 0.29 9.9E-06 53.8 1.7 31 233-264 22-52 (483)
299 2fna_A Conserved hypothetical 85.0 0.35 1.2E-05 48.5 2.2 34 242-276 31-64 (357)
300 2c9o_A RUVB-like 1; hexameric 84.9 0.32 1.1E-05 52.4 2.0 28 241-268 63-90 (456)
301 1um8_A ATP-dependent CLP prote 84.9 0.43 1.5E-05 49.6 2.9 35 241-276 72-106 (376)
302 3tlx_A Adenylate kinase 2; str 84.9 0.29 9.8E-06 48.1 1.5 25 240-264 28-52 (243)
303 2wji_A Ferrous iron transport 84.9 0.3 1E-05 44.1 1.5 22 243-264 5-26 (165)
304 2zej_A Dardarin, leucine-rich 84.7 0.3 1E-05 44.9 1.5 22 243-264 4-25 (184)
305 3ux8_A Excinuclease ABC, A sub 84.5 0.26 8.9E-06 55.8 1.1 26 233-258 36-61 (670)
306 1uj2_A Uridine-cytidine kinase 84.4 0.32 1.1E-05 47.8 1.6 22 243-264 24-45 (252)
307 4f4c_A Multidrug resistance pr 84.4 0.33 1.1E-05 59.4 2.0 34 235-268 438-471 (1321)
308 2iw3_A Elongation factor 3A; a 84.2 0.26 9.1E-06 58.5 1.1 36 233-268 691-726 (986)
309 2qgz_A Helicase loader, putati 84.0 0.41 1.4E-05 49.0 2.3 25 240-264 151-175 (308)
310 3j16_B RLI1P; ribosome recycli 84.0 0.44 1.5E-05 53.7 2.7 35 233-267 365-404 (608)
311 1tq4_A IIGP1, interferon-induc 83.9 0.27 9.4E-06 52.9 0.9 22 243-264 71-92 (413)
312 1ypw_A Transitional endoplasmi 83.8 0.35 1.2E-05 56.1 1.9 32 237-268 507-538 (806)
313 3cf2_A TER ATPase, transitiona 83.7 0.74 2.5E-05 53.7 4.5 26 244-269 241-266 (806)
314 3hu3_A Transitional endoplasmi 83.5 0.42 1.4E-05 52.4 2.2 36 240-276 237-272 (489)
315 2qby_B CDC6 homolog 3, cell di 83.4 0.4 1.4E-05 49.1 1.9 38 240-277 44-91 (384)
316 2wjg_A FEOB, ferrous iron tran 83.3 0.39 1.4E-05 43.7 1.6 22 243-264 9-30 (188)
317 2dyk_A GTP-binding protein; GT 83.0 0.42 1.4E-05 42.0 1.7 23 243-265 3-25 (161)
318 2px0_A Flagellar biosynthesis 83.0 0.36 1.2E-05 49.3 1.4 51 238-288 102-155 (296)
319 1kao_A RAP2A; GTP-binding prot 82.9 0.45 1.5E-05 41.8 1.8 22 243-264 5-26 (167)
320 3tqc_A Pantothenate kinase; bi 82.9 0.38 1.3E-05 50.1 1.4 22 243-264 94-115 (321)
321 1z2a_A RAS-related protein RAB 82.8 0.44 1.5E-05 42.1 1.7 22 243-264 7-28 (168)
322 1a7j_A Phosphoribulokinase; tr 82.6 0.45 1.5E-05 48.4 1.9 23 241-263 5-27 (290)
323 3vkg_A Dynein heavy chain, cyt 82.4 5.1 0.00017 53.2 11.8 140 239-429 1302-1450(3245)
324 2f1r_A Molybdopterin-guanine d 82.3 0.19 6.6E-06 47.3 -0.9 24 242-265 3-26 (171)
325 1sxj_E Activator 1 40 kDa subu 82.3 0.43 1.5E-05 48.5 1.6 26 238-263 33-58 (354)
326 3upu_A ATP-dependent DNA helic 82.2 0.64 2.2E-05 50.0 3.0 42 243-284 47-92 (459)
327 1sxj_C Activator 1 40 kDa subu 82.2 0.4 1.4E-05 49.1 1.3 21 244-264 49-69 (340)
328 2xb4_A Adenylate kinase; ATP-b 82.2 0.43 1.5E-05 46.0 1.5 24 243-266 2-25 (223)
329 2nzj_A GTP-binding protein REM 82.1 0.45 1.5E-05 42.4 1.5 22 243-264 6-27 (175)
330 2qmh_A HPR kinase/phosphorylas 82.0 0.61 2.1E-05 45.8 2.5 25 240-264 33-57 (205)
331 3sr0_A Adenylate kinase; phosp 82.0 0.46 1.6E-05 46.0 1.6 31 244-277 3-33 (206)
332 2ce2_X GTPase HRAS; signaling 81.9 0.54 1.8E-05 41.1 1.9 22 243-264 5-26 (166)
333 1u8z_A RAS-related protein RAL 81.8 0.53 1.8E-05 41.3 1.8 22 243-264 6-27 (168)
334 3nbx_X ATPase RAVA; AAA+ ATPas 81.8 0.71 2.4E-05 50.9 3.2 38 239-276 39-77 (500)
335 1ojl_A Transcriptional regulat 81.6 0.74 2.5E-05 46.9 3.1 43 240-282 24-68 (304)
336 3q85_A GTP-binding protein REM 81.5 0.51 1.8E-05 41.9 1.6 22 243-264 4-25 (169)
337 2erx_A GTP-binding protein DI- 81.5 0.51 1.8E-05 41.7 1.6 22 243-264 5-26 (172)
338 2ged_A SR-beta, signal recogni 81.4 0.54 1.9E-05 43.0 1.8 24 242-265 49-72 (193)
339 1ni3_A YCHF GTPase, YCHF GTP-b 81.4 0.49 1.7E-05 50.6 1.7 27 238-264 17-43 (392)
340 1z08_A RAS-related protein RAB 81.3 0.66 2.2E-05 41.1 2.3 22 243-264 8-29 (170)
341 3k1j_A LON protease, ATP-depen 81.3 0.53 1.8E-05 52.6 2.0 30 236-265 55-84 (604)
342 1ex7_A Guanylate kinase; subst 81.1 0.49 1.7E-05 45.3 1.4 21 244-264 4-24 (186)
343 1ek0_A Protein (GTP-binding pr 81.1 0.67 2.3E-05 40.9 2.2 22 243-264 5-26 (170)
344 1tue_A Replication protein E1; 81.1 0.48 1.6E-05 46.8 1.3 27 238-264 55-81 (212)
345 3gmt_A Adenylate kinase; ssgci 80.9 0.56 1.9E-05 46.6 1.8 31 243-276 10-40 (230)
346 1c1y_A RAS-related protein RAP 80.9 0.68 2.3E-05 40.8 2.2 22 243-264 5-26 (167)
347 1sxj_D Activator 1 41 kDa subu 80.9 0.57 1.9E-05 47.3 1.9 23 242-264 59-81 (353)
348 2p67_A LAO/AO transport system 80.8 0.5 1.7E-05 49.0 1.5 30 235-264 50-79 (341)
349 1g41_A Heat shock protein HSLU 80.7 0.78 2.7E-05 49.9 3.0 31 242-272 51-81 (444)
350 1vt4_I APAF-1 related killer D 80.7 2 7E-05 51.8 6.7 48 241-289 150-202 (1221)
351 1ega_A Protein (GTP-binding pr 80.7 0.51 1.7E-05 48.0 1.5 25 240-264 7-31 (301)
352 1gtv_A TMK, thymidylate kinase 80.6 0.21 7.3E-06 46.9 -1.3 23 243-265 2-24 (214)
353 1ky3_A GTP-binding protein YPT 80.6 0.58 2E-05 41.9 1.7 22 243-264 10-31 (182)
354 3gee_A MNME, tRNA modification 80.5 7 0.00024 42.6 10.5 25 240-264 232-256 (476)
355 1g8p_A Magnesium-chelatase 38 80.5 0.49 1.7E-05 47.8 1.2 26 241-266 45-70 (350)
356 3te6_A Regulatory protein SIR3 80.4 0.4 1.4E-05 49.8 0.6 26 239-264 43-68 (318)
357 3bc1_A RAS-related protein RAB 80.4 0.62 2.1E-05 42.1 1.8 22 243-264 13-34 (195)
358 3q72_A GTP-binding protein RAD 80.4 0.48 1.6E-05 42.0 1.0 22 243-264 4-25 (166)
359 1wms_A RAB-9, RAB9, RAS-relate 80.3 0.63 2.1E-05 41.6 1.8 22 243-264 9-30 (177)
360 1g16_A RAS-related protein SEC 80.2 0.57 1.9E-05 41.4 1.4 22 243-264 5-26 (170)
361 1r2q_A RAS-related protein RAB 80.2 0.75 2.6E-05 40.5 2.2 22 243-264 8-29 (170)
362 2h92_A Cytidylate kinase; ross 80.1 0.68 2.3E-05 43.8 2.0 26 241-266 3-28 (219)
363 1r8s_A ADP-ribosylation factor 80.0 0.62 2.1E-05 41.1 1.6 22 243-264 2-23 (164)
364 1z0j_A RAB-22, RAS-related pro 79.9 0.66 2.3E-05 41.0 1.8 22 243-264 8-29 (170)
365 2gno_A DNA polymerase III, gam 79.8 1.8 6.2E-05 44.3 5.3 49 242-290 19-75 (305)
366 4akg_A Glutathione S-transfera 79.8 8.9 0.0003 50.3 12.6 137 239-427 1265-1410(2695)
367 3cf2_A TER ATPase, transitiona 79.7 1.2 4.1E-05 51.9 4.3 29 242-270 512-540 (806)
368 2hxs_A RAB-26, RAS-related pro 79.6 0.68 2.3E-05 41.5 1.8 22 243-264 8-29 (178)
369 3tqf_A HPR(Ser) kinase; transf 79.6 1 3.5E-05 43.4 3.0 37 239-275 14-54 (181)
370 2lkc_A Translation initiation 79.6 0.66 2.3E-05 41.5 1.7 25 240-264 7-31 (178)
371 4dsu_A GTPase KRAS, isoform 2B 79.5 0.69 2.4E-05 41.7 1.8 22 243-264 6-27 (189)
372 3tw8_B RAS-related protein RAB 79.5 0.6 2E-05 41.7 1.4 21 243-263 11-31 (181)
373 1upt_A ARL1, ADP-ribosylation 79.5 0.71 2.4E-05 41.0 1.8 24 241-264 7-30 (171)
374 3clv_A RAB5 protein, putative; 79.5 0.66 2.3E-05 42.0 1.7 22 243-264 9-30 (208)
375 3a8t_A Adenylate isopentenyltr 79.3 0.68 2.3E-05 48.7 1.9 27 240-266 39-65 (339)
376 4edh_A DTMP kinase, thymidylat 79.2 1.1 3.9E-05 43.4 3.3 25 240-264 5-29 (213)
377 1z0f_A RAB14, member RAS oncog 79.1 0.73 2.5E-05 41.1 1.8 22 243-264 17-38 (179)
378 2fn4_A P23, RAS-related protei 79.1 0.61 2.1E-05 41.7 1.3 22 243-264 11-32 (181)
379 1mh1_A RAC1; GTP-binding, GTPa 79.1 0.74 2.5E-05 41.4 1.8 22 243-264 7-28 (186)
380 3umf_A Adenylate kinase; rossm 79.0 0.75 2.6E-05 45.1 2.0 32 242-276 30-61 (217)
381 1m2o_B GTP-binding protein SAR 79.0 0.66 2.3E-05 43.0 1.5 25 240-264 22-46 (190)
382 2orw_A Thymidine kinase; TMTK, 78.8 0.67 2.3E-05 43.8 1.6 24 240-263 2-25 (184)
383 3thx_A DNA mismatch repair pro 78.8 0.66 2.2E-05 55.0 1.8 31 232-262 653-683 (934)
384 2efe_B Small GTP-binding prote 78.7 0.77 2.6E-05 41.2 1.8 22 243-264 14-35 (181)
385 3v9p_A DTMP kinase, thymidylat 78.6 0.82 2.8E-05 45.1 2.1 26 239-264 23-48 (227)
386 1wb9_A DNA mismatch repair pro 78.6 0.72 2.5E-05 53.7 2.0 30 233-263 600-629 (800)
387 2cxx_A Probable GTP-binding pr 78.5 0.6 2.1E-05 42.3 1.1 22 243-264 3-24 (190)
388 2a5y_B CED-4; apoptosis; HET: 78.5 1.6 5.4E-05 47.9 4.6 49 241-289 152-207 (549)
389 3con_A GTPase NRAS; structural 78.5 0.91 3.1E-05 41.4 2.3 22 243-264 23-44 (190)
390 2www_A Methylmalonic aciduria 78.4 0.7 2.4E-05 48.1 1.7 24 241-264 74-97 (349)
391 3ihw_A Centg3; RAS, centaurin, 78.4 0.79 2.7E-05 42.3 1.9 22 243-264 22-43 (184)
392 2a9k_A RAS-related protein RAL 78.2 0.8 2.7E-05 41.1 1.8 22 243-264 20-41 (187)
393 2y8e_A RAB-protein 6, GH09086P 78.1 0.72 2.5E-05 41.1 1.4 21 243-263 16-36 (179)
394 3pqc_A Probable GTP-binding pr 78.1 0.69 2.4E-05 42.0 1.4 22 243-264 25-46 (195)
395 2x2e_A Dynamin-1; nitration, h 78.0 3.6 0.00012 42.5 6.9 23 242-264 32-54 (353)
396 3e1s_A Exodeoxyribonuclease V, 77.9 1.1 3.9E-05 49.9 3.3 44 240-283 203-249 (574)
397 2ocp_A DGK, deoxyguanosine kin 77.9 0.63 2.2E-05 45.1 1.1 26 240-265 1-26 (241)
398 2oil_A CATX-8, RAS-related pro 77.9 0.82 2.8E-05 41.9 1.8 22 243-264 27-48 (193)
399 3thx_B DNA mismatch repair pro 77.9 0.54 1.8E-05 55.6 0.7 30 233-262 665-694 (918)
400 1m7b_A RND3/RHOE small GTP-bin 77.9 0.7 2.4E-05 42.2 1.3 22 243-264 9-30 (184)
401 3tmk_A Thymidylate kinase; pho 77.8 1.5 5E-05 43.0 3.7 50 239-289 3-52 (216)
402 2g6b_A RAS-related protein RAB 77.8 0.84 2.9E-05 40.9 1.8 22 243-264 12-33 (180)
403 3kkq_A RAS-related protein M-R 77.8 0.97 3.3E-05 40.8 2.3 22 243-264 20-41 (183)
404 3bwd_D RAC-like GTP-binding pr 77.7 0.85 2.9E-05 41.0 1.8 23 242-264 9-31 (182)
405 1nrj_B SR-beta, signal recogni 77.6 0.8 2.8E-05 42.9 1.7 23 243-265 14-36 (218)
406 2f6r_A COA synthase, bifunctio 77.6 0.69 2.3E-05 46.6 1.3 22 243-264 77-98 (281)
407 1svi_A GTP-binding protein YSX 77.5 0.71 2.4E-05 42.2 1.2 22 243-264 25-46 (195)
408 1moz_A ARL1, ADP-ribosylation 77.4 0.54 1.9E-05 42.4 0.4 25 239-263 16-40 (183)
409 4aby_A DNA repair protein RECN 77.4 0.32 1.1E-05 51.0 -1.3 34 228-262 47-81 (415)
410 4bas_A ADP-ribosylation factor 77.4 0.8 2.8E-05 41.9 1.6 22 243-264 19-40 (199)
411 1np6_A Molybdopterin-guanine d 77.3 0.77 2.6E-05 43.4 1.4 23 242-264 7-29 (174)
412 2j37_W Signal recognition part 77.2 3.5 0.00012 45.5 6.8 26 239-264 99-124 (504)
413 1qhl_A Protein (cell division 77.2 0.29 1E-05 48.4 -1.6 22 242-263 28-49 (227)
414 2iwr_A Centaurin gamma 1; ANK 77.2 0.69 2.4E-05 41.6 1.1 22 243-264 9-30 (178)
415 3tkl_A RAS-related protein RAB 77.1 0.9 3.1E-05 41.4 1.8 22 243-264 18-39 (196)
416 1p5z_B DCK, deoxycytidine kina 77.0 0.74 2.5E-05 45.3 1.3 26 240-265 23-48 (263)
417 2bme_A RAB4A, RAS-related prot 77.0 0.93 3.2E-05 41.0 1.9 22 243-264 12-33 (186)
418 2bov_A RAla, RAS-related prote 76.7 0.92 3.2E-05 41.7 1.8 22 243-264 16-37 (206)
419 1ksh_A ARF-like protein 2; sma 76.7 0.92 3.1E-05 41.2 1.8 26 240-265 17-42 (186)
420 3crm_A TRNA delta(2)-isopenten 76.7 0.78 2.7E-05 47.9 1.4 24 243-266 7-30 (323)
421 1vg8_A RAS-related protein RAB 76.6 0.9 3.1E-05 41.9 1.7 22 243-264 10-31 (207)
422 1iqp_A RFCS; clamp loader, ext 76.5 0.97 3.3E-05 44.9 2.0 22 243-264 48-69 (327)
423 2ga8_A Hypothetical 39.9 kDa p 76.5 0.91 3.1E-05 48.1 1.9 27 237-263 18-46 (359)
424 2gf9_A RAS-related protein RAB 76.5 0.95 3.3E-05 41.4 1.8 22 243-264 24-45 (189)
425 1xjc_A MOBB protein homolog; s 76.4 0.83 2.8E-05 43.2 1.4 22 243-264 6-27 (169)
426 3c5c_A RAS-like protein 12; GD 76.2 0.98 3.4E-05 41.6 1.8 22 243-264 23-44 (187)
427 3reg_A RHO-like small GTPase; 76.0 1 3.4E-05 41.4 1.8 22 243-264 25-46 (194)
428 3t5g_A GTP-binding protein RHE 76.0 0.9 3.1E-05 41.0 1.5 21 243-263 8-28 (181)
429 1fzq_A ADP-ribosylation factor 75.9 0.76 2.6E-05 42.1 1.0 23 242-264 17-39 (181)
430 3dpu_A RAB family protein; roc 75.8 3 0.0001 45.6 5.9 21 243-263 43-63 (535)
431 3lxx_A GTPase IMAP family memb 75.8 0.99 3.4E-05 43.5 1.8 22 243-264 31-52 (239)
432 3szr_A Interferon-induced GTP- 75.7 0.56 1.9E-05 52.7 0.0 22 243-264 47-68 (608)
433 2cjw_A GTP-binding protein GEM 75.6 1 3.6E-05 41.8 1.9 22 243-264 8-29 (192)
434 1zbd_A Rabphilin-3A; G protein 75.5 1 3.6E-05 41.5 1.8 22 243-264 10-31 (203)
435 2fh5_B SR-beta, signal recogni 75.5 1 3.5E-05 42.0 1.8 22 243-264 9-30 (214)
436 1zd9_A ADP-ribosylation factor 75.4 0.99 3.4E-05 41.4 1.6 22 243-264 24-45 (188)
437 3d3q_A TRNA delta(2)-isopenten 75.3 0.87 3E-05 47.9 1.3 24 243-266 9-32 (340)
438 1z06_A RAS-related protein RAB 75.1 1.3 4.3E-05 40.5 2.3 22 243-264 22-43 (189)
439 3exa_A TRNA delta(2)-isopenten 75.0 1.1 3.6E-05 47.0 1.9 25 242-266 4-28 (322)
440 2fu5_C RAS-related protein RAB 75.0 0.85 2.9E-05 41.2 1.1 21 243-263 10-30 (183)
441 3dz8_A RAS-related protein RAB 74.9 0.91 3.1E-05 41.7 1.2 23 243-265 25-47 (191)
442 2r8r_A Sensor protein; KDPD, P 74.8 2.6 8.8E-05 41.9 4.5 47 244-290 9-58 (228)
443 2qnr_A Septin-2, protein NEDD5 74.8 0.78 2.7E-05 46.7 0.8 20 244-263 21-40 (301)
444 1udx_A The GTP-binding protein 74.7 0.73 2.5E-05 49.6 0.6 34 231-264 147-180 (416)
445 2a5j_A RAS-related protein RAB 74.5 1.1 3.7E-05 41.2 1.6 22 243-264 23-44 (191)
446 1zj6_A ADP-ribosylation factor 74.5 1 3.5E-05 41.1 1.5 24 241-264 16-39 (187)
447 2chq_A Replication factor C sm 74.5 1.1 3.8E-05 44.2 1.9 22 243-264 40-61 (319)
448 3t1o_A Gliding protein MGLA; G 74.5 1.1 3.7E-05 40.6 1.6 21 243-263 16-36 (198)
449 1ltq_A Polynucleotide kinase; 74.5 0.98 3.4E-05 45.0 1.4 21 243-263 4-24 (301)
450 1f6b_A SAR1; gtpases, N-termin 74.4 0.76 2.6E-05 42.9 0.6 23 242-264 26-48 (198)
451 3k53_A Ferrous iron transport 74.4 0.93 3.2E-05 44.9 1.2 22 243-264 5-26 (271)
452 4i1u_A Dephospho-COA kinase; s 74.4 1.2 4.2E-05 43.5 2.1 22 243-264 11-32 (210)
453 1x3s_A RAS-related protein RAB 74.4 1.1 3.7E-05 40.7 1.6 22 243-264 17-38 (195)
454 2atv_A RERG, RAS-like estrogen 74.4 1.1 3.7E-05 41.4 1.6 22 243-264 30-51 (196)
455 3cbq_A GTP-binding protein REM 74.3 0.94 3.2E-05 42.3 1.2 21 243-263 25-45 (195)
456 2gf0_A GTP-binding protein DI- 74.1 1.2 4.1E-05 40.7 1.8 22 243-264 10-31 (199)
457 2h17_A ADP-ribosylation factor 74.1 0.89 3E-05 41.4 0.9 22 243-264 23-44 (181)
458 2fg5_A RAB-22B, RAS-related pr 74.1 1 3.6E-05 41.4 1.4 22 243-264 25-46 (192)
459 1ewq_A DNA mismatch repair pro 74.1 1.1 3.7E-05 52.0 1.8 23 241-263 576-598 (765)
460 2h57_A ADP-ribosylation factor 74.1 0.87 3E-05 41.7 0.9 22 243-264 23-44 (190)
461 3pxg_A Negative regulator of g 73.9 1.3 4.4E-05 47.9 2.3 26 239-264 199-224 (468)
462 3oes_A GTPase rhebl1; small GT 73.9 1.1 3.6E-05 41.7 1.4 22 243-264 26-47 (201)
463 2p5s_A RAS and EF-hand domain 73.8 1.2 4.2E-05 41.1 1.8 22 243-264 30-51 (199)
464 2hf9_A Probable hydrogenase ni 73.5 0.96 3.3E-05 42.7 1.0 23 242-264 39-61 (226)
465 1w1w_A Structural maintenance 73.5 1.2 4.1E-05 47.4 1.9 26 238-263 23-48 (430)
466 2f7s_A C25KG, RAS-related prot 73.3 1.2 4.2E-05 41.6 1.7 22 243-264 27-48 (217)
467 3cph_A RAS-related protein SEC 73.0 1.2 4.2E-05 41.2 1.6 22 243-264 22-43 (213)
468 2ew1_A RAS-related protein RAB 72.7 1.1 3.9E-05 42.1 1.3 22 243-264 28-49 (201)
469 2q3h_A RAS homolog gene family 72.6 1.2 4.2E-05 40.9 1.5 22 243-264 22-43 (201)
470 2il1_A RAB12; G-protein, GDP, 72.6 1.2 4E-05 41.2 1.3 22 243-264 28-49 (192)
471 1gwn_A RHO-related GTP-binding 72.6 1.1 3.9E-05 42.2 1.3 22 243-264 30-51 (205)
472 2ohf_A Protein OLA1, GTP-bindi 72.5 1.3 4.4E-05 47.5 1.8 27 238-264 19-45 (396)
473 2xxa_A Signal recognition part 72.5 2.7 9.1E-05 45.4 4.3 44 241-285 100-147 (433)
474 2bcg_Y Protein YP2, GTP-bindin 72.2 1.2 4E-05 41.4 1.2 22 243-264 10-31 (206)
475 1a5t_A Delta prime, HOLB; zinc 72.2 8.3 0.00028 39.3 7.8 22 243-264 26-47 (334)
476 2o52_A RAS-related protein RAB 72.2 1.1 3.9E-05 41.6 1.2 22 243-264 27-48 (200)
477 2wsm_A Hydrogenase expression/ 72.1 1.1 3.7E-05 42.1 1.1 23 242-264 31-53 (221)
478 3foz_A TRNA delta(2)-isopenten 72.1 1.3 4.6E-05 46.0 1.8 24 243-266 12-35 (316)
479 1ko7_A HPR kinase/phosphatase; 72.1 1.6 5.5E-05 45.4 2.4 38 240-277 143-184 (314)
480 2gk6_A Regulator of nonsense t 72.0 2.1 7.2E-05 48.0 3.5 44 241-284 195-242 (624)
481 2qu8_A Putative nucleolar GTP- 72.0 1.3 4.4E-05 42.2 1.6 22 243-264 31-52 (228)
482 3pxi_A Negative regulator of g 71.9 1.5 5E-05 50.2 2.3 35 243-277 523-559 (758)
483 2atx_A Small GTP binding prote 71.9 1.2 4.2E-05 40.7 1.3 22 243-264 20-41 (194)
484 3izq_1 HBS1P, elongation facto 71.8 11 0.00038 42.3 9.3 21 242-262 168-188 (611)
485 4gzl_A RAS-related C3 botulinu 71.8 1.3 4.4E-05 41.5 1.4 23 242-264 31-53 (204)
486 4tmk_A Protein (thymidylate ki 71.7 1.8 6.1E-05 42.1 2.5 48 240-289 2-53 (213)
487 2yc2_C IFT27, small RAB-relate 71.7 0.97 3.3E-05 41.5 0.6 22 243-264 22-43 (208)
488 2fv8_A H6, RHO-related GTP-bin 71.5 1.2 4.2E-05 41.6 1.2 22 243-264 27-48 (207)
489 1sxj_B Activator 1 37 kDa subu 71.3 1.5 5.1E-05 43.4 1.9 22 243-264 44-65 (323)
490 1nij_A Hypothetical protein YJ 71.2 1.3 4.4E-05 45.4 1.4 22 243-264 6-27 (318)
491 3q3j_B RHO-related GTP-binding 71.2 1.5 5.2E-05 41.5 1.8 22 243-264 29-50 (214)
492 2qag_C Septin-7; cell cycle, c 71.2 1.3 4.5E-05 47.6 1.5 21 244-264 34-54 (418)
493 1u0j_A DNA replication protein 71.1 1.6 5.4E-05 44.4 2.0 23 242-264 105-127 (267)
494 3iev_A GTP-binding protein ERA 71.0 1.4 4.9E-05 44.7 1.7 23 242-264 11-33 (308)
495 3p26_A Elongation factor 1 alp 70.7 9.1 0.00031 41.4 8.1 20 243-262 35-54 (483)
496 1w36_D RECD, exodeoxyribonucle 70.6 1.9 6.6E-05 48.2 2.8 48 240-287 163-217 (608)
497 2b6h_A ADP-ribosylation factor 70.6 1.3 4.4E-05 41.0 1.2 23 242-264 30-52 (192)
498 3ld9_A DTMP kinase, thymidylat 70.5 1.4 4.8E-05 43.3 1.5 48 240-289 20-72 (223)
499 3vkw_A Replicase large subunit 70.4 1.8 6.1E-05 47.1 2.4 62 221-284 133-202 (446)
500 2gco_A H9, RHO-related GTP-bin 70.4 1.3 4.6E-05 41.0 1.2 22 243-264 27-48 (201)
No 1
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=2.6e-157 Score=1297.34 Aligned_cols=582 Identities=49% Similarity=0.870 Sum_probs=559.5
Q ss_pred eeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCcccccc
Q psy13480 17 FGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGS 96 (615)
Q Consensus 17 ~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgLLGr 96 (615)
.|+|.+|+||+|+++|+.+++|||+|+|+++++.||||++++|.+++||||+|+||++|++|++||+|++|+||||||||
T Consensus 10 ~G~V~~V~G~vv~v~g~~~~~~gE~v~v~~~~l~gEVi~~~~d~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~~lLGr 89 (600)
T 3vr4_A 10 IGKIIKVSGPLVMAENMSEASIQDMCLVGDLGVIGEIIEMRQDVASIQVYEETSGIGPGEPVRSTGEALSVELGPGIISQ 89 (600)
T ss_dssp CEEEEEEETTEEEEESCTTSCTTCEEEETTTTEEEEEEEEETTEEEEEESSCCTTCCTTCEEEECSSSSEEEESTTCTTC
T ss_pred ceEEEEEECcEEEEEcCCCCccCCEEEECCCcEEEEEEEEcCCcEEEEEccCCCCCCCCCEEEECCCCCEEEeCHHHHhh
Confidence 59999999999999999899999999998778999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCcceeE
Q psy13480 97 IFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTY 176 (615)
Q Consensus 97 I~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g~v~~ 176 (615)
||||+|||||++.+..++.|+++|+.++|++++++|+|+| .+|+||.|++||++|+|+|+.+++|+||+||+++|+|+|
T Consensus 90 V~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p-~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~ 168 (600)
T 3vr4_A 90 MFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEA-TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQK 168 (600)
T ss_dssp EECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEE-CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEE
T ss_pred hhCcCCCcccccccccCccccccCCcCCCCCcccccccCc-ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEE
Confidence 9999999999998777768999999999999999999999 799999999999999999999999999999999999999
Q ss_pred ecCCCCccccceEEEEeecCcceeeeeecccccCCCCCcccCCCCCCccccceeeeccccccccCceeeccCCCCCCcch
Q psy13480 177 IAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256 (615)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~ 256 (615)
| ++|+|+++|+|+++++.++.++++|+|+||+|.|+|+.+|+++++||.||||+||+|+||+||||++||||+|+|||+
T Consensus 169 i-~~g~~~v~~~v~~i~~~~g~~~i~~~~~wpv~~~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~GKT~ 247 (600)
T 3vr4_A 169 I-ESGSFTIDDPICVIETEQGLKELTMMQKWPVRRGRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTV 247 (600)
T ss_dssp E-CCEEECTTSCCEEEEETTEEEEECSCEEEETTSCCCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSCHHH
T ss_pred e-cCCcceeceeEEEEeccCCcccccccccccccCCCchhhccCCCceecccchhhhccCCccCCCEEeeecCCCccHHH
Confidence 9 899999999999999743338999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHH
Q psy13480 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFR 336 (615)
Q Consensus 257 l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfr 336 (615)
|+++|++|+++|+|||++||||+|||+||+++|++|+||.+| .++|+||+||+|||||||++|++++|+|+|+|||||
T Consensus 248 L~~~ia~~~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G--~~~m~rtvvV~~tsd~p~~~R~~~~~~altiAEyfr 325 (600)
T 3vr4_A 248 VQHQIAKWSDVDLVVYVGCGERGNEMTDVVNEFPELIDPNTG--ESLMERTVLIANTSNMPVAAREASIYTGITIAEYFR 325 (600)
T ss_dssp HHHHHHHHSSCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTC--SBGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEEEecccHHHHHHHHHHHHhhcccccc--cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 689999999999999999999999999999999999
Q ss_pred hCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCCCCC
Q psy13480 337 DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFS 416 (615)
Q Consensus 337 d~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD~s 416 (615)
|+|+|||||+||+||||+|+||||+++||||+++|||+||+++|++||||||+++|+++++++||||+|++|++|||||+
T Consensus 326 d~G~dVLl~~Ds~tR~A~A~rEiS~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~~gdD~t 405 (600)
T 3vr4_A 326 DMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDIS 405 (600)
T ss_dssp TTTCEEEEEEECHHHHHHHHHHHHHHTTCCBCGGGCBTTHHHHHHHHHTTSEEEECSSTTCCEEEEEEEEEECCSSSCTT
T ss_pred HcCCCEEEEecchHHHHHHHHHHHhccCCCCccccCCchhhhHHHHHHHhhccccccCCCCCCcceEEEEEEECCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998887778999999999999999999
Q ss_pred CchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhcc-CcchHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy13480 417 DPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495 (615)
Q Consensus 417 ~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~~~el~~i~~~~g 495 (615)
|||+++|++|+||||+|||+||++||||||||+.|+||+++.+.+||.+. .++|.+++++++++|++|+|+++|++++|
T Consensus 406 dPi~~~t~~i~dg~ivLsr~La~~giyPAId~l~S~SR~~~~l~~~~~~~~~~~h~~~a~~~~~~la~~~el~~ii~i~G 485 (600)
T 3vr4_A 406 EPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVRLVG 485 (600)
T ss_dssp SHHHHHHHTTCCEECCBCHHHHTTTCSSCBCTTTCEETTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcchhhhhhhccEEEEEhhhHHhCCCCCccCcccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999886 79999999999999999999999999999
Q ss_pred CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHHHHHhhhhHH
Q psy13480 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVESTAQSENKITWSVIRDSMSNI 575 (615)
Q Consensus 496 ~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fyd~a~~ai~~g~~~~~~i~~~~i~~~~~~~ 575 (615)
.++|+++|++++++|+++++.||+|++|+++|.|||++||+.||+.|+.||+.|++++++|+++ +.|++.+.++
T Consensus 486 ~d~Ls~~dk~~l~~a~~i~e~fL~Q~~f~~~d~~~~~~kq~~~l~~i~~~~~~~~~~~~~~~~~------~~i~~~~~~~ 559 (600)
T 3vr4_A 486 IDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGAYF------NEIMEGTVAV 559 (600)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTTTCCH------HHHHHHCHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCCCcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCH------HHHHHHhHHH
Confidence 9999999999999999999899999999999999999999999999999999999999999887 5777765689
Q ss_pred HHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhc
Q psy13480 576 LYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRNLE 614 (615)
Q Consensus 576 ~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f~~l~ 614 (615)
+++|.+|||. + + ++ .+.|+++.++|++.|++|.
T Consensus 560 ~~~~~~~k~~-~--~--~~-~~~~~~~~~~~~~~~~~~~ 592 (600)
T 3vr4_A 560 RERISRSKYI-P--E--EE-LAKISSINEEIKETIQLIV 592 (600)
T ss_dssp HHHHHTGGGS-C--G--GG-THHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-C--c--ch-HHHHHHHHHHHHHHHHHHH
Confidence 9999999996 2 2 22 3778999999999999874
No 2
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=1.5e-158 Score=1302.91 Aligned_cols=579 Identities=53% Similarity=0.928 Sum_probs=486.7
Q ss_pred eeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCccccc
Q psy13480 16 RFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILG 95 (615)
Q Consensus 16 ~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgLLG 95 (615)
..|+|.+|+||+|+|+|+.+++|||+|+|+++++.||||++++|.+.|||||+|+||++|++|++||++++|+|||||||
T Consensus 3 ~~G~V~~V~G~iv~~~g~~~~~~gElv~v~~~~l~geVi~l~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG~gLLG 82 (588)
T 3mfy_A 3 AKGRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEPVVGTGASLSVELGPRLLT 82 (588)
T ss_dssp ----------------------------------------------------------CCCCCSSSSSCCEEEESTTCTT
T ss_pred ceeEEEEEECCEEEEEcCCCCccCCEEEEcCCceEEEEEEecCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeCHHHHh
Confidence 46999999999999999999999999999877899999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCccee
Q psy13480 96 SIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVT 175 (615)
Q Consensus 96 rI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g~v~ 175 (615)
|||||+|||||++++..++ |+++|+.++|||++++|+|+| .+|+||.|.+||++|+|+|+++++|+|||||+++|+|+
T Consensus 83 rV~DglgrPLd~~~~~~g~-~~~~g~~~~~l~~~~~w~f~p-~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~ 160 (588)
T 3mfy_A 83 SIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP-KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIV 160 (588)
T ss_dssp CEEETTCCSSSSCCCCCSS-SCCCCCCCCSSCSSCCEEEEE-CCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEE
T ss_pred hccCCCCCcccCccccccc-ccccccccCcccccccccccc-ccccCcccccCceEEEEecccceeeeeecCCCCCceEE
Confidence 9999999999999988764 999999999999999999999 79999999999999999999999999999999999999
Q ss_pred EecCCCCccccceEEEEee-cCcceeeeeecccccCCCCCcccCCCCCCccccceeeeccccccccCceeeccCCCCCCc
Q psy13480 176 YIAPAGNYKVDEVVLETEF-DGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGK 254 (615)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GK 254 (615)
+|+++|+|+++|+|+++++ +|.+++++|+|+||+|.|+|+.+|+++++||.||||+||+|+||+||||++|||++|+||
T Consensus 161 ~i~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~~~~p~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~g~GK 240 (588)
T 3mfy_A 161 EIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGK 240 (588)
T ss_dssp EECCSEEECTTSEEEEEECTTCCEEEEESCEEEETTSCCCCSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCCSHHH
T ss_pred EeccCCcccccceEEEEecCCCccccccccccccccCCCchhhhccCCcccccCcchhhccCCcccCCeEEeecCCCCCH
Confidence 9999999999999999996 577899999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHH
Q psy13480 255 TVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEY 334 (615)
Q Consensus 255 t~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEy 334 (615)
|+|+++||||+++|+|||++||||++||+||+++|++|+||.+| .++|+||+||+||||||+++|++++|+|+|+|||
T Consensus 241 T~L~~~ia~~~~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g--~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEy 318 (588)
T 3mfy_A 241 TVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNMPVAAREASIYTGITIAEY 318 (588)
T ss_dssp HHHHHHHHHHSSCSEEEEEECCSSSSHHHHHHHHTTTCEETTTT--EEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEEEecccHHHHHHHHHHHHHhcccccc--cccccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 6899999999999999999999999999999999
Q ss_pred HHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCCC
Q psy13480 335 FRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGD 414 (615)
Q Consensus 335 frd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD 414 (615)
|||+|+|||||+||+||||+|+||||+++||||+++||||||+|+|++||||||+++|+++++++||||+|++|++||||
T Consensus 319 frd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~~gdD 398 (588)
T 3mfy_A 319 FRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGD 398 (588)
T ss_dssp HHHTTCEEEEEEECTTTCCCCC----------------CCHHHHHHHHHHTTCEEEECSSSSCCEEEEEEEEECCCTTSC
T ss_pred HHHcCCCEEEeecchHHHHHHHHHHHHhccCCCccccCCchhhhhhhHHHhccccccccCCCCCCcceEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999988877789999999999999999
Q ss_pred CCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhcc-CcchHHHHHHHHHHHHhHHHHHHHHHH
Q psy13480 415 FSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQL 493 (615)
Q Consensus 415 ~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~~~el~~i~~~ 493 (615)
++|||+++|++|+||||+|||+||++||||||||+.|+||+++.+.+||.+. .++|.+++++++++|++|+|+++|+++
T Consensus 399 ~sdpi~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~i~~~~~~~~~~~h~~~a~~~~~~La~~~el~~ii~i 478 (588)
T 3mfy_A 399 FSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRI 478 (588)
T ss_dssp SSCSHHHHHHHHCSEECCBCHHHHHTTCSSCBCTTTCEETTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHhccCeeecCHHHHhCCCCCCcCcccchhhhcccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999776 699999999999999999999999999
Q ss_pred hcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHHHHHhhhh
Q psy13480 494 VGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVESTAQSENKITWSVIRDSMS 573 (615)
Q Consensus 494 ~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fyd~a~~ai~~g~~~~~~i~~~~i~~~~~ 573 (615)
+|.++|+++|++++++|+++++.||+|++|+++|+|||++||+.||+.|+.||+.|++++++|+++ +.|++.
T Consensus 479 ~G~d~Ls~~dk~~l~~ar~i~e~fL~Q~~f~~~d~~~~~~k~~~~l~~i~~~~~~~~~~~~~~~~~------~~i~~~-- 550 (588)
T 3mfy_A 479 VGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINRGVPL------EEIAKL-- 550 (588)
T ss_dssp HCSTTCCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCH------HHHHTC--
T ss_pred cCCccCCHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCH------HHHhcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999887 577774
Q ss_pred HHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhc
Q psy13480 574 NILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRNLE 614 (615)
Q Consensus 574 ~~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f~~l~ 614 (615)
+++++|.+|||. | + + +.|+++.++|+++|++|.
T Consensus 551 ~~~~~~~~~k~~-~--~--~---~~~~~~~~~~~~~~~~~~ 583 (588)
T 3mfy_A 551 PVREEIGRMKFE-R--D--V---SKIRSLIDKTNEQFEELF 583 (588)
T ss_dssp HHHHHHTTGGGC-S--C--H---HHHHTHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCC-C--c--H---HHHHHHHHHHHHHHHHHH
Confidence 799999999994 4 2 2 277999999999999874
No 3
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=7.8e-155 Score=1273.33 Aligned_cols=573 Identities=51% Similarity=0.910 Sum_probs=550.4
Q ss_pred eeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecCcccccc
Q psy13480 17 FGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGS 96 (615)
Q Consensus 17 ~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lGpgLLGr 96 (615)
.|+|++|+||+|+++|+.+++|||+|+|+++++.||||++++|.+++||||+|+||++|++|++||+|++|+||||||||
T Consensus 3 ~G~V~~V~G~vv~v~g~~~~~~gE~v~v~~~~l~gEVi~~~~d~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~lLGr 82 (578)
T 3gqb_A 3 QGVIQKIAGPAVIAKGMLGARMYDISKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGMLNG 82 (578)
T ss_dssp EEEEEEEETTEEEEESCTTCCTTEEEEETTTTEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEESEEEESTTCTTC
T ss_pred eeEEEEEECCEEEEEcCCCCccCCEEEECCCcEEEEEEEEcCCcEEEEEcCCCCCCCCCCEEEECCCCCEEEeCHHHhhh
Confidence 59999999999999999899999999998778999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCCCcceeE
Q psy13480 97 IFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTY 176 (615)
Q Consensus 97 I~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~~g~v~~ 176 (615)
||||+|||||++++..+ +|+++|+.+++++++++|+|+| .+|+||.|++||++|+|+|+..+ |+||+||++.|+|++
T Consensus 83 V~DglG~PlD~~~~~~g-~~~~~g~~~~~l~~~~~w~f~p-~~~~g~~v~~G~i~g~v~e~~~i-h~i~~pp~~~g~v~~ 159 (578)
T 3gqb_A 83 IYDGIQRPLERIREKTG-IYITRGVVVHALDREKKWAWTP-MVKPGDEVRGGMVLGTVPEFGFT-HKILVPPDVRGRVKE 159 (578)
T ss_dssp EECTTSCBHHHHHHHHC-SBCCTTCCCCSSCSSSCEEEEE-CCCTTCEECTTCEEEEEEETTEE-EEEECCTTCCEEEEE
T ss_pred hhCcCCCcccccccccC-ccccccccCCCcCccccccccc-ccccCccccccceeeeecccccc-eecccCCCcCceeEE
Confidence 99999999999877665 4999999999999999999999 79999999999999999999988 999999999999999
Q ss_pred ecCCCCccccceEEEEeecCcceeeeeecccccCCCCCcccCCCCCCccccceeeeccccccccCceeeccCCCCCCcch
Q psy13480 177 IAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256 (615)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~ 256 (615)
|+++|+||++|+|+++++ | ++++|+|+||+|.++|+.+|.++++||.||||+||+|+||+||||++||||+|+|||+
T Consensus 160 i~~~G~~~v~~~i~~~~~-g--~~i~~~~~wPv~~~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~ 236 (578)
T 3gqb_A 160 VKPAGEYTVEEPVVVLED-G--TELKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSV 236 (578)
T ss_dssp ECCSEEECTTSCSEEETT-C--CEECSCEEEETTSCCCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHH
T ss_pred eccCCcccccceeEEeec-C--ccccccccccccCCCChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHH
Confidence 999999999999999985 3 5999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHH
Q psy13480 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFR 336 (615)
Q Consensus 257 l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfr 336 (615)
|+++|+||+++|+|||++||||+|||+||+++|++|+||.+| .++|+||++|+||||||+++|++++|+|+|+|||||
T Consensus 237 l~~~ia~~~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G--~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyfr 314 (578)
T 3gqb_A 237 TQQSLAKWSNADVVVYVGSGERGNEMTDVLVEFPELTDPKTG--GPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFR 314 (578)
T ss_dssp HHHHHHHHSSCSEEEEEEEEECHHHHHHHHTTGGGCBCTTTS--SBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEEEecccHHHHHHHHHHHHhhcccccc--cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988 689999999999999999999999999999999999
Q ss_pred hCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCCCCC
Q psy13480 337 DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFS 416 (615)
Q Consensus 337 d~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD~s 416 (615)
|+|+|||||+||+||||+|+||||+++||||+++||||||+|+|++||||||+++|++ .++||||+|++|++||||++
T Consensus 315 d~G~dVLl~~Ds~tR~A~A~rEis~~lge~P~~~GYp~~l~s~l~~l~ERAg~~~~~~--~~~GSIT~i~~v~~~gdD~t 392 (578)
T 3gqb_A 315 DQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLG--GEEGAVTIVGAVSPPGGDMS 392 (578)
T ss_dssp HTTCEEEECCSCHHHHHHHHHHHHHHTTCCCCSSSSCTTHHHHHHHHHTTCEEEECTT--SCEEEEEEEEECCCTTTCTT
T ss_pred HcCCCEEEEecChHHHHHHHHHHHHhccCCCccccCCchhhhHHHHHHHhhcCcccCC--CCCcceEEEEEEEcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999998765 47899999999999999999
Q ss_pred CchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhcc-CcchHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy13480 417 DPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495 (615)
Q Consensus 417 ~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~~~el~~i~~~~g 495 (615)
|||+++|++|+||||+|||+||++||||||||+.|+||+++.+.+||.+. .++|.+++++++++|++|+|+++|++++|
T Consensus 393 dPi~~~t~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~h~~~a~~~~~~l~~~~el~~ii~i~G 472 (578)
T 3gqb_A 393 EPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVG 472 (578)
T ss_dssp SHHHHHHHTTCSEECCBCHHHHHHTCSSCBCTTTCEESSHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHTTTTTTTTTT
T ss_pred CcchHHHhhhcCceEEECHHHHhCCCCCCcCcccchhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999886 69999999999999999999999999999
Q ss_pred CCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHHHHHhhhhHH
Q psy13480 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVESTAQSENKITWSVIRDSMSNI 575 (615)
Q Consensus 496 ~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fyd~a~~ai~~g~~~~~~i~~~~i~~~~~~~ 575 (615)
.++|+++|++++++|+++++.||+|++|+++|.|||++||+.||+.|+.||+.|++++++|+++ +.|++. ++
T Consensus 473 ~d~Ls~~dk~~l~~a~~i~~~fL~Q~~f~~~d~~~~~~kq~~~l~~i~~~~~~~~~~~~~~~~~------~~i~~~--~~ 544 (578)
T 3gqb_A 473 PDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMKMILAFYKEAEAAIKRGVSI------DEILQL--PV 544 (578)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHTCCCSSSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTTTCCH------HHHTTC--TT
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCCCCCCceecCCHHHHHHHHHHHHHHHHHHHHHHHcCCCH------HHHhcC--cH
Confidence 9999999999999999999899999999999999999999999999999999999999999887 567774 79
Q ss_pred HHHHhcCCCCCCCCchhHHHHHHH-HHHHHHHHHHHHhh
Q psy13480 576 LYQLSSMKFKDPVKDGEAKTRADF-DQLYEDIQQAFRNL 613 (615)
Q Consensus 576 ~~~i~~~k~~~~~~~~e~~~~~~~-~~l~~~i~~~f~~l 613 (615)
+++|.+|||. + + +++ +.| +++.++|++.|++|
T Consensus 545 ~~~~~~~k~~-~--~--~~~-~~~~~~~~~~~~~~~~~~ 577 (578)
T 3gqb_A 545 LERIGRARYV-S--E--EEF-PAYFEEAMKEIQGAFKAL 577 (578)
T ss_dssp HHHHHTTTTS-C--S--SSH-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCC-C--h--hHH-HHHHHHHHHHHHHHHHhh
Confidence 9999999996 3 2 234 556 99999999999986
No 4
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=9.5e-112 Score=918.36 Aligned_cols=420 Identities=24% Similarity=0.359 Sum_probs=387.1
Q ss_pred ceeeEEEEEECceEEEEeCCCCcceeEEEEc---CceeEEEEEEEeCCeEEEEEecCCCCCC-CCCeEEEcCCcceeecC
Q psy13480 15 GRFGFVYAVSGPVVTAEKMSGSAMYELVRVG---YFELVGEIIRLEGDMATIQVYEETSGVT-VGDPVLRTGKPLSVELG 90 (615)
Q Consensus 15 ~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg---~~~l~GEVI~i~~d~a~iqvye~t~Gl~-~G~~V~~tg~~lsv~lG 90 (615)
+.+|+|.+|+|++|+++|++++++||+|.+. +..+.|||+++++|++.+|+|++|+||+ .|++|.+||++++||+|
T Consensus 10 ~~~g~v~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg 89 (465)
T 3vr4_D 10 KEYRTIKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVS 89 (465)
T ss_dssp -CBCCEEEEETTEEEEESCCSCCTTCEEEEECTTSCEEEEEEEEEESSEEEEEETTCCTTCCTTTCEEEECSSCCEEEEC
T ss_pred ceEEEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCCCEEEECCCcceeecc
Confidence 4789999999999999999999999999993 2358999999999999999999999999 89999999999999999
Q ss_pred cccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCC
Q psy13480 91 PGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKA 170 (615)
Q Consensus 91 pgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~ 170 (615)
++|||||||++|||||+.+++...
T Consensus 90 ~~lLGRV~d~lG~PiD~~~~i~~~-------------------------------------------------------- 113 (465)
T 3vr4_D 90 EDMIGRVFDGLGRPKDNGPEILPE-------------------------------------------------------- 113 (465)
T ss_dssp GGGTTEEEETTSCBCSCCCCCCCS--------------------------------------------------------
T ss_pred hhhccceeccCCcccCCCCCCccc--------------------------------------------------------
Confidence 999999999999999987654211
Q ss_pred CcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCceeeccCC
Q psy13480 171 KGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGA 249 (615)
Q Consensus 171 ~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~ 249 (615)
++||+..+. ++.+|.++++||.||+|+||+|+||+||||++|||+
T Consensus 114 ----------------------------------~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg 159 (465)
T 3vr4_D 114 ----------------------------------KYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSG 159 (465)
T ss_dssp ----------------------------------EEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEEC
T ss_pred ----------------------------------ceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCC
Confidence 012333222 256788999999999999999999999999999999
Q ss_pred CCCCcchhhHHhhhcCCC--C----EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHH
Q psy13480 250 FGCGKTVISQALSKYSNS--D----VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREA 323 (615)
Q Consensus 250 ~G~GKt~l~~~la~~~~a--d----viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~ 323 (615)
+|+|||+|+++|++++++ | +|||++||||++||+||+++|++ .++|+||++|+||||+|+++|++
T Consensus 160 ~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~---------~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 160 SGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQ---------TGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp TTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHH---------HTGGGGEEEEEEETTSCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhh---------cCCccceEEEEECCCCCHHHHHH
Confidence 999999999999999988 8 99999999999999999999864 57899999999999999999999
Q ss_pred HHHHHhhHHHHHHh-CCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCce
Q psy13480 324 SIYTGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSV 402 (615)
Q Consensus 324 s~~tg~tiAEyfrd-~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSI 402 (615)
++|+|+|+|||||| +|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+++ +++|||
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l~~l~ERAg~~~-----~~~GSI 305 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIR-----GLKGSV 305 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHHHHHHTSCEEET-----TCSCEE
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHHHhHHHHHhhhccC-----CCCCcE
Confidence 99999999999998 699999999999999999999999999999999999999999999999999985 358999
Q ss_pred EEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhh-hhhccCcchHHHHHHHHHHH
Q psy13480 403 SIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDD-FYDKNHPEFVPLRTKVKEIL 481 (615)
Q Consensus 403 T~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~-~~~~~~~~~~~~~~~~~~~L 481 (615)
|+|++|++||||++|||++++++|+||||+|||+||++||||||||+.|+||+|+.+.. |+. .++|++++.+++++|
T Consensus 306 T~i~tv~~~~dD~~~pI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~--~~~h~~~a~~l~~~~ 383 (465)
T 3vr4_D 306 TQIPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKT--REDHAATMNQLFAAY 383 (465)
T ss_dssp EEEEEEECGGGCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTS--CTTHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcccchhHHHhhhcCeEEEEcHHHHhCCCCCCCCccccchhcchhhcCcccC--CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998743 432 289999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHH
Q psy13480 482 QEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 482 ~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~ 544 (615)
++|+||+++++++|.+.+++.|++++++++++++.||+|++ ++.+++++|+..|..++.
T Consensus 384 ~~~~el~~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~~----~e~~~~~~~~~~l~~~l~ 442 (465)
T 3vr4_D 384 AQGKQAKELAVVLGESALSDIDKIYAKFAERFENEYVNQGF----YTNRTITETLDLGWELLA 442 (465)
T ss_dssp HHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHTTCCCT----TCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHhhHHHHHHHhCCCC----CCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988789999997 566999999999987653
No 5
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=9e-112 Score=924.68 Aligned_cols=463 Identities=22% Similarity=0.304 Sum_probs=408.5
Q ss_pred cccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcce
Q psy13480 7 KMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLS 86 (615)
Q Consensus 7 ~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ls 86 (615)
.+......+.+|+|.+|.|+++++.|++++.+||+|.+. +++.|||+++++|.+.+|+|++|+||++|++|.+||++++
T Consensus 18 ~~~~~~~~~~~G~V~~v~g~i~~v~Gl~~~~~gElv~~~-~~~~g~v~~l~~d~v~~~~~~~~~gi~~G~~V~~tg~~~~ 96 (513)
T 3oaa_A 18 QFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLP-GNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILE 96 (513)
T ss_dssp ------CCTTEEEEEEEETTEEEEEECTTCBTTCEEEET-TTEEEEEEEECSSCEEEEESSCCSSCCTTCEEECCSCSSE
T ss_pred hcCCCCCceeEEEEEEEECcEEEEECCccCCcCCEEEEC-CCCEEEEEEeeCCEEEEEEeCCccCCCCCCEEEEcCCCCe
Confidence 333334577899999999999999999999999999996 4589999999999999999999999999999999999999
Q ss_pred eecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecC
Q psy13480 87 VELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIM 166 (615)
Q Consensus 87 v~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~ 166 (615)
||+|++|||||||++|||||+.+++..
T Consensus 97 VpvG~~lLGRV~d~lG~PiDg~g~i~~----------------------------------------------------- 123 (513)
T 3oaa_A 97 VPVGRGLLGRVVNTLGAPIDGKGPLDH----------------------------------------------------- 123 (513)
T ss_dssp EECSGGGTTCEEETTSCBTTCSCSCCC-----------------------------------------------------
T ss_pred EeeCHHHhccchhhcCcCccCCCCCCc-----------------------------------------------------
Confidence 999999999999999999998754321
Q ss_pred CCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceee
Q psy13480 167 PPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTA 245 (615)
Q Consensus 167 pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~ 245 (615)
.++||+..++| +.+|.++++||.||+|+||+|+|||||||++
T Consensus 124 -------------------------------------~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l~PigrGQR~~ 166 (513)
T 3oaa_A 124 -------------------------------------DGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQREL 166 (513)
T ss_dssp -------------------------------------SCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHHSCCBTTCBCE
T ss_pred -------------------------------------cceeecccCCCCccccCCcCcccccceeeeccccccccCCEEE
Confidence 01356666555 7899999999999999999999999999999
Q ss_pred ccCCCCCCcchh-hHHhhhcCCCCE-EEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHH
Q psy13480 246 IPGAFGCGKTVI-SQALSKYSNSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREA 323 (615)
Q Consensus 246 I~g~~G~GKt~l-~~~la~~~~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~ 323 (615)
|||++|+|||+| +++|++++++|+ |||++||||++||++|+++|.+ .++|+||++|+||||+|+.+|++
T Consensus 167 Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l~~---------~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 167 IIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEE---------HGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp EEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHHHH---------HSCSTTEEEEEECTTSCHHHHHH
T ss_pred eecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHHhh---------cCcccceEEEEECCCCChHHHHH
Confidence 999999999999 689999999996 8999999999999999999864 57899999999999999999999
Q ss_pred HHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhcccccc-------CC-
Q psy13480 324 SIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL-------GN- 395 (615)
Q Consensus 324 s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~-------~~- 395 (615)
++|+|+|+||||||+|+|||||+||+||||+|+||||+++||||+++||||++|+.+++||||||++.+. |+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYP~~vf~~~srLlERAg~~~~~~~~~~~~~~~ 317 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEV 317 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHHHHHHHHTTCCBCTTSCBTTHHHHHHHHHTTCSEECHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHhcCCCCcccCCCchhhhhcchHHHHHhhcccccchhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998532 11
Q ss_pred CCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHH
Q psy13480 396 PDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRT 475 (615)
Q Consensus 396 ~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~ 475 (615)
.+++||||+|++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+++.++. ++|++++.
T Consensus 318 ~g~~GSITal~~V~~~~dD~s~pIp~~~~si~DGqIvLsr~La~~giyPAIdvl~SvSRv~~~~~~------~~~~~va~ 391 (513)
T 3oaa_A 318 KGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQT------KIMKKLSG 391 (513)
T ss_dssp CSCCEEEEECCEEECGGGCCSSHHHHHHHHHSSEEEEECHHHHTTSCCSCBCTTTCEESSGGGGSC------HHHHHHHH
T ss_pred CCCCcceEEEEEEEcCCCCccCcchHhhhccCCeEEEEehhHHhCCCCCccCccccccccCccccc------HHHHHHHH
Confidence 134899999999999999999999999999999999999999999999999999999999998876 78999999
Q ss_pred HHHHHHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHH-HHHHHHHH
Q psy13480 476 KVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFY-DMSRHAVE 554 (615)
Q Consensus 476 ~~~~~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fy-d~a~~ai~ 554 (615)
++|.+|++|+|+++|+++ | +.++++++..++++++++ .||+|+.|++ +++++|+..|.++.+.| |... ++
T Consensus 392 ~lr~~la~y~el~~~~~~-g-~~ld~~~~~~l~~~~~i~-~fL~Q~~~~~----~~~~e~~~~l~a~~~g~ld~~~--~~ 462 (513)
T 3oaa_A 392 GIRTALAQYRELAAFSQF-A-SDLDDATRKQLDHGQKVT-ELLKQKQYAP----MSVAQQSLVLFAAERGYLADVE--LS 462 (513)
T ss_dssp HHHHHHHHHHHHHHHHTT-C-CSCCHHHHHHHHHHHHHH-HHTCCCSSCC----CCTTHHHHHHHHHHSCTTTTTC--CH
T ss_pred HHHHHHHHHHHHHHHHHh-h-ccCCHHHHHHHHHHHHHH-HHhCCCCCCC----CCHHHHHHHHHHHhcCCCccCC--HH
Confidence 999999999999999997 5 568899999999999987 7999998655 89999999999988744 3211 22
Q ss_pred ccccchhhhhHHHHHhhhhHHHHHHhcCCCC
Q psy13480 555 STAQSENKITWSVIRDSMSNILYQLSSMKFK 585 (615)
Q Consensus 555 ~g~~~~~~i~~~~i~~~~~~~~~~i~~~k~~ 585 (615)
+...++..+. .++++.++++...|...|.+
T Consensus 463 ~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~ 492 (513)
T 3oaa_A 463 KIGSFEAALL-AYVDRDHAPLMQEINQTGGY 492 (513)
T ss_dssp HHHHHHHHHH-HHHTGGGCHHHHHHHHHCCC
T ss_pred HHHHHHHHHH-HHHHhhhHHHHHHHHhcCCC
Confidence 2222322222 56677778888888766654
No 6
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=5.6e-112 Score=924.21 Aligned_cols=420 Identities=24% Similarity=0.373 Sum_probs=365.0
Q ss_pred cceeeEEEEEECceEEEEeCCCCcceeEEEEc--C-ceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecC
Q psy13480 14 EGRFGFVYAVSGPVVTAEKMSGSAMYELVRVG--Y-FELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELG 90 (615)
Q Consensus 14 ~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg--~-~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lG 90 (615)
.+.+|+|++|.|++|+++|+.++++||+|.+. + ..+.|||+++++|.+.+|+|++|+||++|++|.+||++++||||
T Consensus 11 ~~~~g~V~~V~g~vv~v~g~~~~~~ge~v~i~~~~g~~~~geV~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~vpvg 90 (469)
T 2c61_A 11 VKEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKDCGVIFTGETLKLPAS 90 (469)
T ss_dssp -----------CCEEEEECCSCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEC-------------CEEEBCEEEEC
T ss_pred cccccEEEEEECcEEEEeeCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCEEEEEEeCCCcCCCCCCEEEEcCCCcEEEcc
Confidence 56889999999999999999899999999994 3 35789999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCC
Q psy13480 91 PGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKA 170 (615)
Q Consensus 91 pgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~ 170 (615)
++|||||||++|||||+.+++....
T Consensus 91 ~~lLGRV~d~lG~PiDg~~~i~~~~------------------------------------------------------- 115 (469)
T 2c61_A 91 VDLLGRILSGSGEPRDGGPRIVPDQ------------------------------------------------------- 115 (469)
T ss_dssp GGGTTCEEETTSCBSSSCCCCCCSE-------------------------------------------------------
T ss_pred ccceeeEEcccCCCCCCCCCCCccc-------------------------------------------------------
Confidence 9999999999999999886542110
Q ss_pred CcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCceeeccCC
Q psy13480 171 KGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGA 249 (615)
Q Consensus 171 ~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~ 249 (615)
+||+..+. ++.+|.++++||.||+|+||+|+||+||||++|||+
T Consensus 116 -----------------------------------~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg 160 (469)
T 2c61_A 116 -----------------------------------LLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSA 160 (469)
T ss_dssp -----------------------------------EEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEEC
T ss_pred -----------------------------------cccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECC
Confidence 12333222 245789999999999999999999999999999999
Q ss_pred CCCCcchhhHHhhhcCCC------CEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHH
Q psy13480 250 FGCGKTVISQALSKYSNS------DVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREA 323 (615)
Q Consensus 250 ~G~GKt~l~~~la~~~~a------dviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~ 323 (615)
+|+|||+|+++||+++++ |+|||++||||++|++||+++|++ .++|+||+||+||||+|+++|++
T Consensus 161 ~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~---------~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 161 SGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEK---------TGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHH---------HSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHh---------ccCccceEEEEECCCCCHHHHHH
Confidence 999999999999999877 799999999999999999999963 57899999999999999999999
Q ss_pred HHHHHhhHHHHHH-hCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCce
Q psy13480 324 SIYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSV 402 (615)
Q Consensus 324 s~~tg~tiAEyfr-d~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSI 402 (615)
++|+|+|+||||| |+|+|||||+||+||||+|+||||+++||||+++|||||+|+.|++||||||+++ .++|||
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~l~ERAg~~~-----~~~GSI 306 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVK-----GAKGSV 306 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHHHTSCEEBT-----TSSCEE
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhhHHhhccccC-----CCCCce
Confidence 9999999999999 5999999999999999999999999999999999999999999999999999985 357999
Q ss_pred EEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcch-hhhhhccCcchHHHHHHHHHHH
Q psy13480 403 SIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRAL-DDFYDKNHPEFVPLRTKVKEIL 481 (615)
Q Consensus 403 T~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~-~~~~~~~~~~~~~~~~~~~~~L 481 (615)
|+|++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+++.+ .+||- .++|++++.++++.|
T Consensus 307 T~i~~v~~~~dD~~dPI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~~~~~ig~~~~--~~~~~~~a~~l~~~l 384 (469)
T 2c61_A 307 TQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKT--REDHKAVSDQMYAGY 384 (469)
T ss_dssp EEEEEEECCSCTTTSCCCCCGGGGTTEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTS--CTTHHHHHHHHHHHH
T ss_pred eeeeeeecCCCCcCcchHHHHhhccCcEEEEcHHHHhCCCCCccCccccccccchhhcccccC--CHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999985 55653 289999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 482 QEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 482 ~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
++++||+++++++|.+.+++.|+.++++++++++.||+|++|+ ++++++|+..|..++
T Consensus 385 ~~~~eL~~i~~~~G~~~l~d~~~~~l~~~~~i~~~fL~Q~~~~----~~~~~et~~~l~~~l 442 (469)
T 2c61_A 385 AEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNE----NRTIEDTLEIGWQIL 442 (469)
T ss_dssp HHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHTTCCCTTC----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCC----CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987799999855 599999999988864
No 7
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=4.6e-111 Score=921.51 Aligned_cols=478 Identities=22% Similarity=0.296 Sum_probs=420.6
Q ss_pred cccccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCc
Q psy13480 5 LGKMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKP 84 (615)
Q Consensus 5 ~~~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ 84 (615)
++.+......+.+|+|.+|.|+++.+.|++++.+||+|.+..+++.|+|+++++|.+.+++|++++||++|++|.+||++
T Consensus 28 ~~~~~~~~~~~~~G~V~~V~g~iv~v~gl~~~~~gEl~~i~~~g~~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~ 107 (515)
T 2r9v_A 28 IKSFEEKIDLEDTGKVIQVGDGIARAYGLNKVMVSELVEFVETGVKGVAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRI 107 (515)
T ss_dssp -CTTCCCSCTTTEEEEEEEETTEEEEEECTTCCTTEEEEETTTCCEEEEEECCTTCEEEEEESCCTTCCTTCEEEEEEEE
T ss_pred HHhcCCCCcceeeeEEEEEECcEEEEecCCCCCCCCEEEEecCCeEEEEEEecCCeEEEEEecCcccccCCCEEEEeCCc
Confidence 44454445567889999999999999999999999999994334679999999999999999999999999999999999
Q ss_pred ceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeee
Q psy13480 85 LSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKM 164 (615)
Q Consensus 85 lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i 164 (615)
++||+|++|||||+|++|+|||+.+++..
T Consensus 108 ~~vpvG~~lLGRVvd~lG~PiDg~g~i~~--------------------------------------------------- 136 (515)
T 2r9v_A 108 IEVPVGEELLGRVVNPLGEPLDGKGPINA--------------------------------------------------- 136 (515)
T ss_dssp CEEEESGGGTTCEECTTSCBCSSSCCCCC---------------------------------------------------
T ss_pred ceeecCccceeeEEcCCCCCcCCCCCCCc---------------------------------------------------
Confidence 99999999999999999999998653211
Q ss_pred cCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCce
Q psy13480 165 IMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGT 243 (615)
Q Consensus 165 ~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~ 243 (615)
.++||++.++| +.+|.++++||.||+|+||+|+|||||||
T Consensus 137 ---------------------------------------~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l~PigrGQR 177 (515)
T 2r9v_A 137 ---------------------------------------KNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQR 177 (515)
T ss_dssp ---------------------------------------SEEEESCCCCCCGGGBCCCCSEECCSCHHHHHHSCEETTCB
T ss_pred ---------------------------------------cceeecccCCCCcccccCCCcchhcCccccccccccccCCE
Confidence 13578887776 89999999999999999999999999999
Q ss_pred eeccCCCCCCcchh-hHHhhhcCCCCE-EEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHH
Q psy13480 244 TAIPGAFGCGKTVI-SQALSKYSNSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321 (615)
Q Consensus 244 ~~I~g~~G~GKt~l-~~~la~~~~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R 321 (615)
++|||++|+|||+| +.+|++++++|+ |||++||||++||++|+++|.+ .++|+||++|+||||+|+.+|
T Consensus 178 ~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~---------~g~m~rtvvV~atad~p~~~r 248 (515)
T 2r9v_A 178 ELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQ---------YGAMEYTTVVVASASDPASLQ 248 (515)
T ss_dssp EEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHH---------TTGGGGEEEEEECTTSCHHHH
T ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHh---------CCCcceeEEEEECCCCCHHHH
Confidence 99999999999999 679999999995 8999999999999999999954 688999999999999999999
Q ss_pred HHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCc
Q psy13480 322 EASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401 (615)
Q Consensus 322 ~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GS 401 (615)
++++|+|+|+||||||+|+|||||+||+||||+|+||||+++||||+++||||++|+.+++||||||++++.+ ++||
T Consensus 249 ~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLlERAg~~~~~~---~~GS 325 (515)
T 2r9v_A 249 YIAPYAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLNDKL---GGGS 325 (515)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHHTTCEEBCTTT---TSCE
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHHHHHhhccccC---CCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986432 4799
Q ss_pred eEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHH
Q psy13480 402 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEIL 481 (615)
Q Consensus 402 IT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L 481 (615)
||+|++|++|+||+++||++++++|+||||+|||+||++||||||||+.|+||+++.++. ++|++++.++|++|
T Consensus 326 ITal~~v~~~~~D~s~pI~~~~~si~DGqI~Lsr~La~~g~yPAIdvl~SvSRv~~~~~~------~~~~~~a~~lr~~l 399 (515)
T 2r9v_A 326 LTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSRVGGSAQI------KAMKQVAGMLRIDL 399 (515)
T ss_dssp EEEEEEEEESTTCTTSHHHHHHHHTSSEEEEBCHHHHHHTCSSCBCTTTCEEGGGTTTSC------HHHHHHHHHHHHHH
T ss_pred eEEeeeeeccCCCccccchhhhccccceEEEEchHHHhCCCCCeeccccccccCCcccCC------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 89999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHccccch-
Q psy13480 482 QEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVESTAQSE- 560 (615)
Q Consensus 482 ~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fyd~a~~ai~~g~~~~- 560 (615)
++|+|+++++++ | +.++++++..++++++++ .||+|++|++ +|+++|+.+|+++...| -++++.+
T Consensus 400 a~y~el~~~~~~-G-~~l~~~~~~~l~~~~~i~-~fL~Q~~~~~----~~~~e~~~~l~~~~~g~-------ld~i~~~~ 465 (515)
T 2r9v_A 400 AQYRELETFAQF-A-TELDPATRAQIIRGQRLM-ELLKQEQYSP----MPVEEQVVVLFAGVRGY-------LDDLPVEE 465 (515)
T ss_dssp HHHHHHHTTGGG-C-SCCCHHHHHHHHHHHHHH-HHTCCCTTCC----CCHHHHHHHHHHHHTTT-------TTTSCGGG
T ss_pred hhhhHHHHHHHh-c-cCCCHHHHHHHHHHHHHH-HHhcCCCCCC----CCHHHHHHHHHHHHhhh-------hccccHHH
Confidence 999999999997 6 568899999999999997 5999998665 79999999999986533 1223321
Q ss_pred ----hhhhHHHHHhhhhHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q psy13480 561 ----NKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAF 610 (615)
Q Consensus 561 ----~~i~~~~i~~~~~~~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f 610 (615)
.+-...++++.++++...|...+.+ .++.++++++..+++++.|
T Consensus 466 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~l~~~~~~~~~~~ 513 (515)
T 2r9v_A 466 VRRFEKEFLRFMHEKHQDILDDIKTKKEL------TSETEEKLKKAIEEFKTTF 513 (515)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHSSC------CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHhc
Confidence 1112255666777888888766644 2233455666666655544
No 8
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=3.8e-110 Score=905.66 Aligned_cols=420 Identities=22% Similarity=0.360 Sum_probs=387.4
Q ss_pred cceeeEEEEEECceEEEEeCCCCcceeEEEEc---CceeEEEEEEEeCCeEEEEEecCCCCCC-CCCeEEEcCCcceeec
Q psy13480 14 EGRFGFVYAVSGPVVTAEKMSGSAMYELVRVG---YFELVGEIIRLEGDMATIQVYEETSGVT-VGDPVLRTGKPLSVEL 89 (615)
Q Consensus 14 ~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg---~~~l~GEVI~i~~d~a~iqvye~t~Gl~-~G~~V~~tg~~lsv~l 89 (615)
.+.+|+|.+|+|++|++.|++++++||+|.+. +..+.|||+++++|++.+|+|++|+||+ .|++|.+||++++||+
T Consensus 5 ~~~~g~V~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpv 84 (464)
T 3gqb_B 5 KKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGV 84 (464)
T ss_dssp CCCBCCEEEEETTEEEEESCTTSCTTCEEEEECTTSCEEEEEEEEEESSEEEEEESSCCTTCCSSSCEEEEEESSCEEEE
T ss_pred cceeeEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCCCEEEECCCCcEEEe
Confidence 35789999999999999999999999999993 3358999999999999999999999999 8999999999999999
Q ss_pred CcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCC
Q psy13480 90 GPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPK 169 (615)
Q Consensus 90 GpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~ 169 (615)
|++|||||||++|||||+.+++...
T Consensus 85 g~~lLGRV~d~lG~PiD~~~~i~~~------------------------------------------------------- 109 (464)
T 3gqb_B 85 SKEMLGRRFNGIGKPIDGLPPITPE------------------------------------------------------- 109 (464)
T ss_dssp CSTTTTEEEETTCCBCSSSCCCCCS-------------------------------------------------------
T ss_pred ChHhcCCEeccCCcccCCCccccCc-------------------------------------------------------
Confidence 9999999999999999987643210
Q ss_pred CCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccccccCceeeccC
Q psy13480 170 AKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPG 248 (615)
Q Consensus 170 ~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g 248 (615)
++||+..+. ++.+|.++++||.||+|+||+|+||+||||++|||
T Consensus 110 -----------------------------------~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifg 154 (464)
T 3gqb_B 110 -----------------------------------KRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFS 154 (464)
T ss_dssp -----------------------------------EEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEE
T ss_pred -----------------------------------ceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEec
Confidence 123443332 26678899999999999999999999999999999
Q ss_pred CCCCCcchhhHHhhhcCCC---------C----EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCC
Q psy13480 249 AFGCGKTVISQALSKYSNS---------D----VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSN 315 (615)
Q Consensus 249 ~~G~GKt~l~~~la~~~~a---------d----viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn 315 (615)
++|+|||+|+++|++++++ | +|||++||||++|+++|+++|++ .++|+||++|+||||
T Consensus 155 g~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~---------~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 155 GSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER---------TGALSRSVLFLNKAD 225 (464)
T ss_dssp ETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH---------TSGGGGEEEEEEETT
T ss_pred CCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh---------cccccceEEEEECCC
Confidence 9999999999999999887 6 99999999999999999999864 578999999999999
Q ss_pred CCHHHHHHHHHHHhhHHHHHHh-CCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccC
Q psy13480 316 MPVAAREASIYTGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLG 394 (615)
Q Consensus 316 ~p~~~R~~s~~tg~tiAEyfrd-~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~ 394 (615)
+|+.+|++++|+|+|+|||||| +|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+++
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~~l~~l~ERag~~~--- 302 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVE--- 302 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHHHHHHHHTSCBCBT---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHhhcccC---
Confidence 9999999999999999999998 799999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhh-hhhccCcchHHH
Q psy13480 395 NPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDD-FYDKNHPEFVPL 473 (615)
Q Consensus 395 ~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~-~~~~~~~~~~~~ 473 (615)
+++||||+|++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+|+.+.. |+. .++|+++
T Consensus 303 --~~~GSIT~l~~v~~~~dD~~~pi~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~--~~~h~~~ 378 (464)
T 3gqb_B 303 --GKKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKT--REDHKQV 378 (464)
T ss_dssp --TCSCEEEEEEEEEETTSCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGTSSTTTS--CTTHHHH
T ss_pred --CCCCcEEEEEEEEccCCCccCchhHHHhhhcCeEEEEcHHHHhCCCCCCcCcccchhhcchhhcCcccC--cHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998743 442 2899999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHH
Q psy13480 474 RTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 474 ~~~~~~~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~ 544 (615)
+.+++++|++|+||++|+++.|.+.+++.|++++.+++++++.||+|+ + +.+++++|+..|+.++.
T Consensus 379 a~~l~~~~~~~~el~~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~-~----e~~~~~~s~~~l~~ll~ 444 (464)
T 3gqb_B 379 SDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQG-Q----QNRSIEESLQIAWALLS 444 (464)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCSCCCCSHHHHTTHHHHHHHHTTTCCT-T----CCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhHHHHHHhcCCC-C----CCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998878999998 4 44899999999988764
No 9
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=7.5e-110 Score=912.89 Aligned_cols=481 Identities=21% Similarity=0.293 Sum_probs=416.0
Q ss_pred cccccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCc
Q psy13480 5 LGKMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKP 84 (615)
Q Consensus 5 ~~~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ 84 (615)
++.+......+.+|+|++|.|+++++.|++++.+||+|.+.+ ++.|+|+++++|++.+++|++++||++|++|.+||++
T Consensus 16 ~~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~~-g~~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~ 94 (510)
T 2ck3_A 16 ILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSS-GLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAI 94 (510)
T ss_dssp --------CCSSEEEEEEEETTEEEEEECTTCBTTCEEEETT-SCEEEEEEECSSCEEEEESSCGGGCCTTCEEEECCCC
T ss_pred HHhcCCCcceeEEeEEEEEECcEEEEeeCCCCCCCCEEEECC-CCeEEEEeccCCeEEEEEECCcccccCCCEEEEeCCc
Confidence 344444445678899999999999999999999999999975 4679999999999999999999999999999999999
Q ss_pred ceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeee
Q psy13480 85 LSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKM 164 (615)
Q Consensus 85 lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i 164 (615)
++||+|++|||||+|++|+|||+.+++..
T Consensus 95 ~~vpvg~~lLGRVvd~lG~PiDg~g~i~~--------------------------------------------------- 123 (510)
T 2ck3_A 95 VDVPVGEELLGRVVDALGNAIDGKGPIGS--------------------------------------------------- 123 (510)
T ss_dssp CEEEESGGGTTCEECTTSCBCSSSCCCCC---------------------------------------------------
T ss_pred ceeecCccceeeEEccCCcCcCCCCCCCc---------------------------------------------------
Confidence 99999999999999999999998754321
Q ss_pred cCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCce
Q psy13480 165 IMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGT 243 (615)
Q Consensus 165 ~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~ 243 (615)
.++||++.++| +.+|.++++||.||+|+||+|+|||||||
T Consensus 124 ---------------------------------------~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR 164 (510)
T 2ck3_A 124 ---------------------------------------KARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQR 164 (510)
T ss_dssp ---------------------------------------SEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCB
T ss_pred ---------------------------------------cceeecccCCCCcccccccCccccccceeeccccccccCCE
Confidence 12568887776 88999999999999999999999999999
Q ss_pred eeccCCCCCCcchh-hHHhhhcCC--------CC-EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeC
Q psy13480 244 TAIPGAFGCGKTVI-SQALSKYSN--------SD-VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANT 313 (615)
Q Consensus 244 ~~I~g~~G~GKt~l-~~~la~~~~--------ad-viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanT 313 (615)
++|||++|+|||+| +.+|++++. +| +|||++||||++||++|+++|.+ .++|+||++|+||
T Consensus 165 ~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~---------~g~m~~tvvV~at 235 (510)
T 2ck3_A 165 ELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD---------ADAMKYTIVVSAT 235 (510)
T ss_dssp CEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHH---------TTCGGGEEEEEEC
T ss_pred EEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHh---------cCCcccceEEEEC
Confidence 99999999999999 678887655 77 59999999999999999999954 6889999999999
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhcccccc
Q psy13480 314 SNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL 393 (615)
Q Consensus 314 sn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~ 393 (615)
+|+|+.+|++++|+|+|+||||||+|+|||||+||+||||+|+||||+++||||+++||||++|+.+++||||||++++.
T Consensus 236 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLlERAg~~~~~ 315 (510)
T 2ck3_A 236 ASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDA 315 (510)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHHTTCEEBCGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred CCCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHH
Q psy13480 394 GNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPL 473 (615)
Q Consensus 394 ~~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~ 473 (615)
+ ++||||+|++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+++.++. ++|+++
T Consensus 316 ~---~~GSITal~~v~~~~dD~s~pI~~~~~si~DgqI~Lsr~La~~gi~PAIdvl~SvSRv~~~~~~------~~~~~~ 386 (510)
T 2ck3_A 316 F---GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT------RAMKQV 386 (510)
T ss_dssp G---TSCEEEEEEEEECSTTCTTSHHHHHHHHHSSEEEEBCHHHHHHTCSSCBCTTTCEESSGGGGSC------HHHHHH
T ss_pred C---CCcceeEeeeeccCCCCccccchHhhhcccceEEEEehhHhhCCCCCcccchhcccccccccCC------HHHHHH
Confidence 1 4799999999999999999999999999999999999999999999999999999999999876 899999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHH-HHHHHH
Q psy13480 474 RTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFY-DMSRHA 552 (615)
Q Consensus 474 ~~~~~~~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fy-d~a~~a 552 (615)
+.++|++|++|+|+++|+++ | ..++++++..++++++++ .||+|++|++ +|+++|+.+|+++...| |.. .
T Consensus 387 a~~lr~~la~y~el~~~~~~-G-~~l~~~~~~~l~~~~~i~-~fL~Q~~~~~----~~~~~~~~~l~~~~~g~l~~i--~ 457 (510)
T 2ck3_A 387 AGTMKLELAQYREVAAFAQF-G-SDLDAATQQLLSRGVRLT-ELLKQGQYSP----MAIEEQVAVIYAGVRGYLDKL--E 457 (510)
T ss_dssp HHHHHHHHHHHHHHGGGSSS-C-SSSCHHHHHHHHHHHHHH-HTTCCCSSCC----CCHHHHHHHHHHHHTTSSTTS--C
T ss_pred HHHHHHHHHhhhHHHHHHHh-c-CCCCHHHHHHHHHhHHHH-HHhcCCCCCC----CCHHHHHHHHHHHHhhhhcCC--C
Confidence 99999999999999999997 6 568899999999999997 5999998665 79999999999986533 110 0
Q ss_pred HHccccchhhhhHHHHHhhhhHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q psy13480 553 VESTAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAF 610 (615)
Q Consensus 553 i~~g~~~~~~i~~~~i~~~~~~~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f 610 (615)
+++...++.. ...++++.++++...|...+.+ .++.++++++..+++++.|
T Consensus 458 ~~~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~l~~~~~~~~~~~ 508 (510)
T 2ck3_A 458 PSKITKFENA-FLSHVISQHQALLGKIRTDGKI------SEESDAKLKEIVTNFLAGF 508 (510)
T ss_dssp GGGHHHHHHH-HHHHHHHHCHHHHHHHHHSSSC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHhhhHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHHh
Confidence 0111112111 1256666777888888777754 2333456666666666655
No 10
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=6.7e-110 Score=911.80 Aligned_cols=457 Identities=21% Similarity=0.301 Sum_probs=405.6
Q ss_pred cccccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCc
Q psy13480 5 LGKMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKP 84 (615)
Q Consensus 5 ~~~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ 84 (615)
++.+......+.+|+|.+|.|+++++.|++++.+||+|.+.+ ++.|+|+++++|.+.+++|+++.||++|++|.+||++
T Consensus 16 i~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~~-g~~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~ 94 (502)
T 2qe7_A 16 IENYEADLEVVEVGTVIQVGDGIARVHGLEKVMAGELLEFEN-GVMGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRI 94 (502)
T ss_dssp -----------CEEEEEEEETTEEEEECCTTCBTTEEEEETT-SCEEEEEEEETTEEEEEECSCCSSCCTTCEEEEEEEE
T ss_pred HHhcCCCcceeEEEEEEEecCcEEEEEECCCCCCCCEEEECC-CCEEEEEEecCCeEEEEEecCccCCcCCCEEEEeCCc
Confidence 334444444667899999999999999999999999999975 4679999999999999999999999999999999999
Q ss_pred ceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeee
Q psy13480 85 LSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKM 164 (615)
Q Consensus 85 lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i 164 (615)
++||+|++|||||+|++|+|||+.+++..
T Consensus 95 ~~vpvG~~lLGRVvd~lG~PiDg~g~i~~--------------------------------------------------- 123 (502)
T 2qe7_A 95 MEVPVGEALLGRVVNPLGQPLDGRGPIET--------------------------------------------------- 123 (502)
T ss_dssp SEEECSGGGTTCEECTTCCBSSCSCCCCC---------------------------------------------------
T ss_pred ceEEcccccceEEEccCCCCCCCCCCCCC---------------------------------------------------
Confidence 99999999999999999999998754311
Q ss_pred cCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCce
Q psy13480 165 IMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGT 243 (615)
Q Consensus 165 ~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~ 243 (615)
.++||++.++| +.+|.++++||.||+|+||+|+|||||||
T Consensus 124 ---------------------------------------~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR 164 (502)
T 2qe7_A 124 ---------------------------------------AEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQR 164 (502)
T ss_dssp ---------------------------------------CCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHSSCCBTTCB
T ss_pred ---------------------------------------CceeeccCCCCCcccccCCCCccccceeecccccccccCCE
Confidence 12578887776 89999999999999999999999999999
Q ss_pred eeccCCCCCCcchh-hHHhhhcCCCCE-EEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHH
Q psy13480 244 TAIPGAFGCGKTVI-SQALSKYSNSDV-IVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321 (615)
Q Consensus 244 ~~I~g~~G~GKt~l-~~~la~~~~adv-iV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R 321 (615)
++|||++|+|||+| +.+|++++++|+ |||++||||++||++|+++|.+ .++|+||+||+||+|+|+.+|
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~---------~g~m~~tvvV~atad~p~~~r 235 (502)
T 2qe7_A 165 ELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQ---------HDALDYTIVVTASASEPAPLL 235 (502)
T ss_dssp CEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHH---------TTCSTTEEEEEECTTSCHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhh---------CCCcceeEEEEECCCCCHHHH
Confidence 99999999999999 779999999995 8999999999999999999954 688999999999999999999
Q ss_pred HHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCc
Q psy13480 322 EASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401 (615)
Q Consensus 322 ~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GS 401 (615)
++++|+|+|+||||||+|+|||||+||+||||+|+||||+++||||+++||||++|+.+++||||||++++.+ ++||
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~~~~~~---~~GS 312 (502)
T 2qe7_A 236 YLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEK---GGGS 312 (502)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCBBCTTT---TCCE
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhcccccC---CCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986432 4799
Q ss_pred eEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHH
Q psy13480 402 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEIL 481 (615)
Q Consensus 402 IT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L 481 (615)
||+|++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+++.++. ++|++++.++|++|
T Consensus 313 ITal~~v~~~~dD~s~pI~~~~~si~DgqI~Lsr~La~~g~~PAIdvl~S~SRv~~~~~~------~~~~~~a~~lr~~l 386 (502)
T 2qe7_A 313 LTALPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVGISVSRVGGAAQI------KAMKKVAGTLRLDL 386 (502)
T ss_dssp EEEEEEEECSTTCCSSHHHHHHHTTSSEEEEECHHHHTTTCSSCBCTTTCEESSGGGGSC------HHHHHHHHHHHHHH
T ss_pred eeEEEEEEccCCCcccchhHHHhhhcCcEEEEehhHhhCCCCceeCcccccccCCCccCC------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 89999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHccccchh
Q psy13480 482 QEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVESTAQSEN 561 (615)
Q Consensus 482 ~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fyd~a~~ai~~g~~~~~ 561 (615)
++|+|+++|+++ | ..++++++..++++++++ .||+|++|++ +|+++|+.+|+++...| -+.++. +
T Consensus 387 a~y~el~~~~~~-G-~~l~~~~~~~l~~~~~i~-~fL~Q~~~~~----~~~~~~~~~l~~~~~g~-------l~~i~~-~ 451 (502)
T 2qe7_A 387 AQYRELQAFAQF-G-SDLDKATQAKLNRGERTV-EILKQDEHKP----MPVEEQVISIYAVTNGF-------MDDIPV-E 451 (502)
T ss_dssp HHHHHGGGSTTC-C-CCTTTTTTTTHHHHHHHH-HHHCCCTTCC----CCHHHHHHHHHHHHTTT-------TTSSCS-T
T ss_pred hhhHHHHHHHHh-c-cCCCHHHHHHHHHHHHHH-HHhCCCCCCC----CCHHHHHHHHHHHHhhh-------hcCCCH-H
Confidence 999999999997 6 568888999999999997 5999998665 79999999999986533 122333 1
Q ss_pred hhh------HHHHHhhhhHHHHHHhcCCCC
Q psy13480 562 KIT------WSVIRDSMSNILYQLSSMKFK 585 (615)
Q Consensus 562 ~i~------~~~i~~~~~~~~~~i~~~k~~ 585 (615)
+|. ..++++.++++...|...|.+
T Consensus 452 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 481 (502)
T 2qe7_A 452 DVRRFEEELLSFMRANKDSLLDHIRQTGEL 481 (502)
T ss_dssp THHHHHHHHHHHHHHTTHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCC
Confidence 221 245666777888888777754
No 11
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=5.1e-110 Score=913.66 Aligned_cols=481 Identities=21% Similarity=0.290 Sum_probs=416.2
Q ss_pred cccccccCCcceeeEEEEEECceEEEEeCCCCcceeEEEEcCceeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCCc
Q psy13480 5 LGKMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKP 84 (615)
Q Consensus 5 ~~~~~~~~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~~~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ 84 (615)
++.+......+.+|+|++|.|+++++.|++++.+||+|.+.+ ++.|+|+++++|++.+++|+++.||++|++|.+||++
T Consensus 17 i~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~~-g~~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~ 95 (507)
T 1fx0_A 17 IEGYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEE-GTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRI 95 (507)
T ss_dssp --------CTTTEEEECCCCSSEEEEEECTTCCTTCCEEETT-CCEEEEEEECSSEEEEEECSCGGGCCTTCEEECCCCC
T ss_pred HHhccCCcceeEEEEEEEEeCCEEEEEECCCccCCCEEEECC-CceEEEEeccCCeEEEEEecCccCCcCCCEEEEeCCc
Confidence 334444444667899999999999999999999999999975 4679999999999999999999999999999999999
Q ss_pred ceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeee
Q psy13480 85 LSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKM 164 (615)
Q Consensus 85 lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i 164 (615)
++||+|++|||||||++|+|||+.+++..
T Consensus 96 ~~vpvG~~lLGRVvd~lG~PiDg~g~i~~--------------------------------------------------- 124 (507)
T 1fx0_A 96 AQIPVSEAYLGRVINALAKPIDGRGEITA--------------------------------------------------- 124 (507)
T ss_dssp CEEEESSSCSSCCCCSSSCCSSSSCCCCC---------------------------------------------------
T ss_pred ceeecCccceeEEEccCCcCCCCCCCCCC---------------------------------------------------
Confidence 99999999999999999999998754321
Q ss_pred cCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCce
Q psy13480 165 IMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGT 243 (615)
Q Consensus 165 ~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~ 243 (615)
.++||++.++| +.+|.++++||.||+|+||+|+|||||||
T Consensus 125 ---------------------------------------~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR 165 (507)
T 1fx0_A 125 ---------------------------------------SESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQR 165 (507)
T ss_dssp ---------------------------------------SEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCB
T ss_pred ---------------------------------------CceeeccCCCCCcccccccCCcccccceecccccccccCCE
Confidence 12578887776 88999999999999999999999999999
Q ss_pred eeccCCCCCCcchh-hHHhhhcCCCC-EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHH
Q psy13480 244 TAIPGAFGCGKTVI-SQALSKYSNSD-VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321 (615)
Q Consensus 244 ~~I~g~~G~GKt~l-~~~la~~~~ad-viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R 321 (615)
++|||++|+|||+| +.+|++++++| +|||++||||++|+++|+++|.+ .++|+||++|+||+|+|+.+|
T Consensus 166 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~---------~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQE---------RGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGG---------GTGGGSEEEEEECTTSCGGGT
T ss_pred EEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHh---------cCccccceEEEECCCCCHHHH
Confidence 99999999999999 77999999999 58999999999999999999954 688999999999999999999
Q ss_pred HHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCc
Q psy13480 322 EASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401 (615)
Q Consensus 322 ~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GS 401 (615)
++++|+|+|+||||||+|+|||||+||+||||+|+||||+++||||+++||||++|+.+++||||||++++.+ ++||
T Consensus 237 ~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~~~~~~---~~GS 313 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLL---GEGS 313 (507)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCBBCTTT---TSCE
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhhccccC---CCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986421 4799
Q ss_pred eEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHH
Q psy13480 402 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEIL 481 (615)
Q Consensus 402 IT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L 481 (615)
||+|++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+++.++. ++|++++.++|++|
T Consensus 314 ITal~~v~~~~~D~s~pI~~~~~si~DgqIvLsr~La~~g~yPAIdvl~S~SR~~~~~~~------~~~~~~a~~lr~~l 387 (507)
T 1fx0_A 314 MTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQI------KAMKKVAGKLKLEL 387 (507)
T ss_dssp EEECCEEECSTTCTTSHHHHHHHTTSSCBCCCCSSSSSSSCSSCCCTTTCCCTTGGGGSC------HHHHHHHHHHHHHH
T ss_pred eeeeeeeeccCCCcccchHHHHHhhcCcEEEEehhHhhCCCCCccchhhhhccccccCCC------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 89999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHHHHH-HHHHHHHHccccch
Q psy13480 482 QEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFY-DMSRHAVESTAQSE 560 (615)
Q Consensus 482 ~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~~fy-d~a~~ai~~g~~~~ 560 (615)
++|+|+++++++ | ..++++++..++++++++ .||+|++|++ +|+++|+.+|.++...| |.. .+++...++
T Consensus 388 a~y~el~~~~~~-G-~~l~~~~~~~l~~~~~i~-~fL~Q~~~~~----~~~~e~~~~l~~~~~g~l~~i--~~~~i~~~~ 458 (507)
T 1fx0_A 388 AQFAELEAFAQF-A-SDLDKATQNQLARGQRLR-ELLKQPQSAP----LTVEEQVMTIYTGTNGYLDSL--ELDQVRKYL 458 (507)
T ss_dssp HHHHHHTTTGGG-C-SSCCHHHHHHHHHHHHHH-HHHCCCTTCC----CCHHHHHHHHHHHHTTSSSSS--CHHHHHHHH
T ss_pred HhhhHHHHHHHh-c-cCCCHHHHHHHHHHHHHH-HHHCCCCCCC----CCHHHHHHHHHHHhhchhcCC--CHHHHHHHH
Confidence 999999999997 6 568899999999999997 5999998665 79999999999986532 110 001111122
Q ss_pred hhhhHHHHHhhhhHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q psy13480 561 NKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAF 610 (615)
Q Consensus 561 ~~i~~~~i~~~~~~~~~~i~~~k~~~~~~~~e~~~~~~~~~l~~~i~~~f 610 (615)
.. ...++++.++++...|...+.+ .++.++++++.++++++.|
T Consensus 459 ~~-~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~l~~~~~~~~~~~ 501 (507)
T 1fx0_A 459 VE-LRTYVKTNKPEFQEIISSTKTF------TEEAEALLKEAIQEQMERF 501 (507)
T ss_dssp HH-HHHHHHHTCHHHHHHHHHHTSC------CHHHHHHHHHHHHHHHTTC
T ss_pred HH-HHHHHHhhhHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHHh
Confidence 12 2256666777888888766644 2233455566655555444
No 12
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=8e-108 Score=891.75 Aligned_cols=417 Identities=28% Similarity=0.447 Sum_probs=384.1
Q ss_pred ceeeEEEEEECceEEEEeC-CCCcceeEEEEc--CceeEEEEEE-EeCCeEEEEEecCCCCCCCCCeEEEcCCcceeecC
Q psy13480 15 GRFGFVYAVSGPVVTAEKM-SGSAMYELVRVG--YFELVGEIIR-LEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELG 90 (615)
Q Consensus 15 ~~~G~I~~I~Gpvv~a~g~-~~~~~~E~v~vg--~~~l~GEVI~-i~~d~a~iqvye~t~Gl~~G~~V~~tg~~lsv~lG 90 (615)
..+|+|++|.||+|+++|. ..+.+|+.|.|+ +.++.+||++ ++++.+.+|+|++|+||++|++|.+||++++|++|
T Consensus 12 ~~~G~v~~v~G~vv~v~~~~~~~~i~~~~~i~~~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpvG 91 (482)
T 2ck3_D 12 ATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVG 91 (482)
T ss_dssp -CEEEEEEEETTEEEEEESSCCCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCEEECS
T ss_pred CcceEEEEEEccEEEEEecCccCcccceEEEeeCCCcEEEEEeEEecCCeEEEEeccCccCCCCCCEEEEcCCcceeecc
Confidence 4579999999999999995 458899999996 2468999999 88888999999999999999999999999999999
Q ss_pred cccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecCCCCC
Q psy13480 91 PGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKA 170 (615)
Q Consensus 91 pgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~pp~~ 170 (615)
++|||||||++|||||+.++...
T Consensus 92 ~~lLGRV~d~lG~PiDg~~~~~~--------------------------------------------------------- 114 (482)
T 2ck3_D 92 PETLGRIMNVIGEPIDERGPIKT--------------------------------------------------------- 114 (482)
T ss_dssp GGGBTCEECTTSCBCSSSCSCCC---------------------------------------------------------
T ss_pred ccccCCEEcccCcCcCCcCCCCc---------------------------------------------------------
Confidence 99999999999999998753210
Q ss_pred CcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccCC
Q psy13480 171 KGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGA 249 (615)
Q Consensus 171 ~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~ 249 (615)
.++||++.++| +.+|.++++||.||+|+||+|+||+||||++|||+
T Consensus 115 ---------------------------------~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg 161 (482)
T 2ck3_D 115 ---------------------------------KQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGG 161 (482)
T ss_dssp ---------------------------------CCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEEC
T ss_pred ---------------------------------cccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecC
Confidence 13578877766 78888999999999999999999999999999999
Q ss_pred CCCCcchhhHHhhhc-C--CCCEEEEEeecCcchHHHHHHHhcccccccccCccccCc------ceEEEEEeCCCCCHHH
Q psy13480 250 FGCGKTVISQALSKY-S--NSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIM------KRTTLVANTSNMPVAA 320 (615)
Q Consensus 250 ~G~GKt~l~~~la~~-~--~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m------~rtvlvanTsn~p~~~ 320 (615)
+|+|||+|+++|+++ + ++|+|||++||||++||+||+++|++ .+.| +||++|+||||+||.+
T Consensus 162 ~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~---------~~~l~~~~~~~rtvvV~~t~d~p~~~ 232 (482)
T 2ck3_D 162 AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE---------SGVINLKDATSKVALVYGQMNEPPGA 232 (482)
T ss_dssp TTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHH---------HTSSCSSSSCCCEEEEEECTTSCHHH
T ss_pred CCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhh---------ccccccccCCceEEEEEECCCCCHHH
Confidence 999999999999885 4 45899999999999999999999965 3445 4999999999999999
Q ss_pred HHHHHHHHhhHHHHHHh-CCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCC
Q psy13480 321 REASIYTGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDRE 399 (615)
Q Consensus 321 R~~s~~tg~tiAEyfrd-~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~ 399 (615)
|++++|+|+|+|||||| +|+|||||+||+||||+|+||||+++||||+++|||||+|+.|++||||||+ .++
T Consensus 233 r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~A~rEis~~lge~P~~~GYpp~l~~~l~~l~ERag~-------~~~ 305 (482)
T 2ck3_D 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT-------TKK 305 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHHHTTSSC-------CSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHhhhhcCCCCccccCchhHHHHhHHHHHhhcC-------CCC
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999986 468
Q ss_pred CceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcc-hhhhhhccCcchHHHHHHHH
Q psy13480 400 GSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRA-LDDFYDKNHPEFVPLRTKVK 478 (615)
Q Consensus 400 GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~-~~~~~~~~~~~~~~~~~~~~ 478 (615)
||||+|++|++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+++. +.. ++|++++.++|
T Consensus 306 GSIT~i~tv~v~~dD~tdPi~d~~~~i~dG~ivLsr~La~~giyPAIDvl~S~SR~~~~~i~~------~~~~~~a~~lr 379 (482)
T 2ck3_D 306 GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVG------SEHYDVARGVQ 379 (482)
T ss_dssp CCEEEEEEEECGGGCTTSHHHHHHGGGCSEEEEBCHHHHTTTCSSCBCTTSCEETTCSHHHHC------HHHHHHHHHHH
T ss_pred CceeeeEEEEecCCCCCCccHHHHHHhcCeEEEEcHHHHhCCCCCccCcccccccCCCcccCC------HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999854 544 78999999999
Q ss_pred HHHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCC------CCccCCHHHHHHHHHHHHH
Q psy13480 479 EILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSP------YDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 479 ~~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~------~d~~~~~~kq~~~L~~I~~ 544 (615)
++|++|+|+++|++++|.+.+++.|+.+++++++++ +||+|++|.. .+++||+++++..|+.|+.
T Consensus 380 ~~la~y~el~~li~i~G~~~l~~~d~~~l~~~~~i~-~fL~Q~~~v~~~f~~~~g~~~~~~~t~~~l~~il~ 450 (482)
T 2ck3_D 380 KILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQ-RFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILA 450 (482)
T ss_dssp HHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHH-HHTCCCCGGGHHHHSSCCCCCCHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHhCCCcCCHHHHHHHHHHHHHH-HHHcCCchHHHHhhcCccccCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999997 7999997633 5899999999999999875
No 13
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=2.2e-108 Score=899.12 Aligned_cols=415 Identities=27% Similarity=0.435 Sum_probs=384.0
Q ss_pred eeEEEEEECceEEEEeCC--CCcceeEEEEcC-----c--eeEEEEEE-EeCCeEEEEEecCCCCCCCCCeEEEcCCcce
Q psy13480 17 FGFVYAVSGPVVTAEKMS--GSAMYELVRVGY-----F--ELVGEIIR-LEGDMATIQVYEETSGVTVGDPVLRTGKPLS 86 (615)
Q Consensus 17 ~G~I~~I~Gpvv~a~g~~--~~~~~E~v~vg~-----~--~l~GEVI~-i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ls 86 (615)
+|+|++|.||+|+++|+. .+.+|+.|.|+. . ++.+||++ ++++.+.+++|++|+||++|++|.+||+|++
T Consensus 20 ~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~ 99 (498)
T 1fx0_B 20 LGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLS 99 (498)
T ss_dssp CEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSCE
T ss_pred CceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcce
Confidence 699999999999999984 478999999962 2 58999999 7778888999999999999999999999999
Q ss_pred eecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeeecC
Q psy13480 87 VELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKMIM 166 (615)
Q Consensus 87 v~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i~~ 166 (615)
||+|++|||||||++|||||+.+++..
T Consensus 100 vpvG~~lLGRV~d~lG~PiD~~~~i~~----------------------------------------------------- 126 (498)
T 1fx0_B 100 VPVGGPTLGRIFNVLGEPVDNLRPVDT----------------------------------------------------- 126 (498)
T ss_dssp EEESSTTTTCEECTTSCBCSSSSCCCC-----------------------------------------------------
T ss_pred EecCccceeeEEcccccCCCCcCCcCC-----------------------------------------------------
Confidence 999999999999999999998753210
Q ss_pred CCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCceee
Q psy13480 167 PPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTA 245 (615)
Q Consensus 167 pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~ 245 (615)
.++||++.++| +.+|.++++||.||||+||+|+||+||||++
T Consensus 127 -------------------------------------~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~g 169 (498)
T 1fx0_B 127 -------------------------------------RTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIG 169 (498)
T ss_dssp -------------------------------------SEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEE
T ss_pred -------------------------------------CceeccccCCCchhhhcccccccccceeEeeeecccccCCeEE
Confidence 13578887776 7899999999999999999999999999999
Q ss_pred ccCCCCCCcchhhHHhhhc-C--CCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcc-------eEEEEEeCCC
Q psy13480 246 IPGAFGCGKTVISQALSKY-S--NSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMK-------RTTLVANTSN 315 (615)
Q Consensus 246 I~g~~G~GKt~l~~~la~~-~--~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~-------rtvlvanTsn 315 (615)
|||++|+|||+|+++|+++ + +.|+|||++||||+||++||+++|++ .+.|+ ||+||+||||
T Consensus 170 Ifgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~---------~~~l~~~~l~~~rtvvV~~t~d 240 (498)
T 1fx0_B 170 LFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKE---------SGVINEQNIAESKVALVYGQMN 240 (498)
T ss_dssp EEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHH---------TTSSCSSTTCCCCEEEEEECTT
T ss_pred eecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhc---------ccccccccccccceEEEEeCCC
Confidence 9999999999999999885 4 45999999999999999999999965 34454 9999999999
Q ss_pred CCHHHHHHHHHHHhhHHHHHHh-CCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccC
Q psy13480 316 MPVAAREASIYTGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLG 394 (615)
Q Consensus 316 ~p~~~R~~s~~tg~tiAEyfrd-~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~ 394 (615)
+||.+|++++|+|+|+|||||| +|+|||||+||+||||+|+||||+++||||+++|||||||++|++||||||+
T Consensus 241 ~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~ERag~----- 315 (498)
T 1fx0_B 241 EPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITS----- 315 (498)
T ss_dssp SCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSSSSSC-----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHhccC-----
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcc-hhhhhhccCcchHHH
Q psy13480 395 NPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRA-LDDFYDKNHPEFVPL 473 (615)
Q Consensus 395 ~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~-~~~~~~~~~~~~~~~ 473 (615)
.++||||+|++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+++. +.. ++|+++
T Consensus 316 --~~~GSIT~i~tV~v~~dD~tdPi~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~~~~i~~------~~h~~~ 387 (498)
T 1fx0_B 316 --TKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVG------EEHYEI 387 (498)
T ss_dssp --CTTCEECCEEEEECGGGCSSSHHHHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTCSTTTTC------HHHHHH
T ss_pred --CCCCceeeeEEEEccCCCcCCcchHHHHHhhCceEEehhhHHhCCCCceeccccccccCCCcccCC------HHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999865 444 789999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCC------CCccCCHHHHHHHHHHHHH
Q psy13480 474 RTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSP------YDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 474 ~~~~~~~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~------~d~~~~~~kq~~~L~~I~~ 544 (615)
+.++|++|++|+|+++|++++|.+.++++|+.+++++++++ +||+|++|.. .+++||+++++..|+.|+.
T Consensus 388 a~~lr~~la~y~el~~li~i~G~d~ls~~d~~~l~~~~~i~-~fL~Q~~~v~e~ft~~~g~~v~~~~t~~~l~~il~ 463 (498)
T 1fx0_B 388 AQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIE-RFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILS 463 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTSCTTTHHHHHHHHHHH-HHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH-HHHcCCchHHHHhhcCCCcccCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999997 7999997743 3799999999999999874
No 14
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=6e-100 Score=830.96 Aligned_cols=416 Identities=28% Similarity=0.468 Sum_probs=385.4
Q ss_pred eeEEEEEECceEEEEeCC--CCcceeEEEEcC-----c----eeEEEEEE-EeCCeEEEEEecCCCCCCCCCeEEEcCCc
Q psy13480 17 FGFVYAVSGPVVTAEKMS--GSAMYELVRVGY-----F----ELVGEIIR-LEGDMATIQVYEETSGVTVGDPVLRTGKP 84 (615)
Q Consensus 17 ~G~I~~I~Gpvv~a~g~~--~~~~~E~v~vg~-----~----~l~GEVI~-i~~d~a~iqvye~t~Gl~~G~~V~~tg~~ 84 (615)
+|+|++|.|++|+++|+. .+.+||+|.|+. . ++.+||++ ++++.+.+|+|++|.||++|++|.+||++
T Consensus 3 ~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~ 82 (473)
T 1sky_E 3 RGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAP 82 (473)
T ss_dssp EEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEE
T ss_pred ceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCCEEEEcCCc
Confidence 699999999999999984 479999999953 2 58999999 88899999999999999999999999999
Q ss_pred ceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccceeeeee
Q psy13480 85 LSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENTLVKHKM 164 (615)
Q Consensus 85 lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~~~~h~i 164 (615)
++|++|++|||||||++|||||+.+++.. +
T Consensus 83 ~~vpvg~~llGrv~d~lG~piD~~g~i~~---------------~----------------------------------- 112 (473)
T 1sky_E 83 ISVPVGQVTLGRVFNVLGEPIDLEGDIPA---------------D----------------------------------- 112 (473)
T ss_dssp CEEECSGGGTTCEECTTSCBCSSSCCCCT---------------T-----------------------------------
T ss_pred ceeeccccceeeEEeecCCccCcccccCC---------------C-----------------------------------
Confidence 99999999999999999999998753210 0
Q ss_pred cCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCCC-cccCCCCCCccccceeeeccccccccCce
Q psy13480 165 IMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGT 243 (615)
Q Consensus 165 ~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~ 243 (615)
.++||++.++| +.+|.++++||.||+|+||.|+|+++||+
T Consensus 113 ---------------------------------------~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~ 153 (473)
T 1sky_E 113 ---------------------------------------ARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGK 153 (473)
T ss_dssp ---------------------------------------SCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCE
T ss_pred ---------------------------------------ceeecccccCcchhhhcccCccccccchHHHHHhhhccCCE
Confidence 03578887776 68999999999999999999999999999
Q ss_pred eeccCCCCCCcchhhHHhhhcC---CCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHH
Q psy13480 244 TAIPGAFGCGKTVISQALSKYS---NSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAA 320 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~---~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~ 320 (615)
++|+|++|+|||+|+++|+++. ..+++||++||||++|+++|+++|++ .++|+||++|+||+|+||.+
T Consensus 154 ~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~---------~~~l~~tvvv~~~~~d~pg~ 224 (473)
T 1sky_E 154 IGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKD---------SGVISKTAMVFGQMNEPPGA 224 (473)
T ss_dssp EEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHH---------TSGGGGEEEEEECTTSCHHH
T ss_pred EEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhh---------cCCcceeEEEEEcCCCCHHH
Confidence 9999999999999999998753 35799999999999999999999864 57899999999999999999
Q ss_pred HHHHHHHHhhHHHHHHh-CCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCC
Q psy13480 321 REASIYTGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDRE 399 (615)
Q Consensus 321 R~~s~~tg~tiAEyfrd-~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~ 399 (615)
|++++|+|+|+|||||| +|+||||++||+||||+|+||||+++||||+++|||||+|+.|++||||||+ .++
T Consensus 225 r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~~-------~~~ 297 (473)
T 1sky_E 225 RMRVALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITS-------TAK 297 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSSC-------BSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhcC-------CCC
Confidence 99999999999999999 8999999999999999999999999999999999999999999999999986 368
Q ss_pred CceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcc-hhhhhhccCcchHHHHHHHH
Q psy13480 400 GSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRA-LDDFYDKNHPEFVPLRTKVK 478 (615)
Q Consensus 400 GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~-~~~~~~~~~~~~~~~~~~~~ 478 (615)
||||+|++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+++. +.. ++|++++.++|
T Consensus 298 GSIT~i~tv~~~~dD~~dpi~~~~~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~~~~~------~~~~~~a~~lr 371 (473)
T 1sky_E 298 GSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVG------EEHYQVARKVQ 371 (473)
T ss_dssp CEEEEEEECCCSTTCSSSHHHHHHHTTCSEEEEBCTTHHHHTCSSCBCTTTCCBTTCCHHHHH------HHHHHHHHHHH
T ss_pred CceEEEEEEEecCCCCCCcchHHHHhhcCceEEecHHHHhCCCCCccccccccccccchhcCC------HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999965 544 78999999999
Q ss_pred HHHHhHHHHHHHHHHhcCCCCcHHhHHHHHHHHHHHHHccCCCCCCC------CCccCCHHHHHHHHHHHHH
Q psy13480 479 EILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSP------YDRFCPFYKTVGMLRNMIA 544 (615)
Q Consensus 479 ~~L~~~~el~~i~~~~g~~~l~~~d~~il~~~~~i~~~fL~Q~~~~~------~d~~~~~~kq~~~L~~I~~ 544 (615)
++|++|+|+++|++++|.+.+++.|+.+++++++++ +||+|++|.. .+.++|+++|+.+|+.|+.
T Consensus 372 ~~la~y~e~~~li~i~g~~~ls~~d~~~l~~~~~i~-~fL~Q~~~~~~~~~~~~~~~~~~~~t~~~l~~i~~ 442 (473)
T 1sky_E 372 QTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQ-FFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILE 442 (473)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCTTHHHHHHHHHHHHH-HHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHhhCcccCCHHHHHHHHHHHHHH-HHHcCCchHhhhhhccCCccCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999987 7999998753 5899999999999998874
No 15
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=7.9e-72 Score=607.22 Aligned_cols=415 Identities=25% Similarity=0.348 Sum_probs=369.2
Q ss_pred CCcceeeEEEEEECceEEEEeCCCCcceeEEEEcC---c---eeEEEEEEEeCCeEEEEEecCCCCCCCCCeEEEcCC--
Q psy13480 12 DREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGY---F---ELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGK-- 83 (615)
Q Consensus 12 ~~~~~~G~I~~I~Gpvv~a~g~~~~~~~E~v~vg~---~---~l~GEVI~i~~d~a~iqvye~t~Gl~~G~~V~~tg~-- 83 (615)
.+.+.+|+|++|.|++|+++|+ ++++||+|.+.. . .+.|||+++++|.+.+|+|++|+||++|++|.+||+
T Consensus 5 ~~~~~~g~v~~v~g~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~ 83 (438)
T 2dpy_A 5 PAVRRYGRLTRATGLVLEATGL-QLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHG 83 (438)
T ss_dssp --CCCCEEEEECSSSSEEEESC-CCCSSCEEEEEECSTTSCEEEEEEEEECCTTCEEEEESSCCTTCCTTEEEEEC----
T ss_pred cccceeeEEEEEECcEEEEEeC-CCCCCCEEEEecCCCCccccEEEEEEEEcCCEEEEEEccCCCCCCCCCEEEECCCcc
Confidence 3466789999999999999998 899999999963 2 589999999999999999999999999999999999
Q ss_pred -----cceeecCcccccccccccccccCCCccccccccccCCCCCCCCCccccccccccccccccccccCcceeeeeccc
Q psy13480 84 -----PLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGSHITGGDQYGLVHENT 158 (615)
Q Consensus 84 -----~lsv~lGpgLLGrI~DgigrPLd~~~~~~~~~~i~~G~~~~~ld~~~~w~f~p~~~~~g~~v~~g~~~g~v~e~~ 158 (615)
++++++|+++||||+|++|+|+|+.++... .
T Consensus 84 ~~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~~~---------------~----------------------------- 119 (438)
T 2dpy_A 84 DGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDT---------------L----------------------------- 119 (438)
T ss_dssp ------CEEECSGGGTTEEECTTCCBSSSSCCCCC---------------S-----------------------------
T ss_pred ccccccEEEEcchhhhhhhhhccCCccCCCCCccc---------------c-----------------------------
Confidence 999999999999999999999987653211 0
Q ss_pred eeeeeecCCCCCCcceeEecCCCCccccceEEEEeecCcceeeeeecccccCCCC-CcccCCCCCCccccceeeeccccc
Q psy13480 159 LVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPR-PVTEKLPANYPLLTGQRVLDSLFP 237 (615)
Q Consensus 159 ~~~h~i~~pp~~~g~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~q~wPvr~~r-p~~~r~~~~~pl~TG~rviD~l~P 237 (615)
+.||+..++ ++.++..++.++.||+++||.+||
T Consensus 120 ----------------------------------------------~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~ 153 (438)
T 2dpy_A 120 ----------------------------------------------ETGALITPPFNPLQRTPIEHVLDTGVRAINALLT 153 (438)
T ss_dssp ----------------------------------------------CEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSC
T ss_pred ----------------------------------------------ccccccCCCCCceEEeccceecCCCceEEeeeEE
Confidence 124555433 467788889999999999999999
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCC
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMP 317 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p 317 (615)
|++||+++|+|++|||||||+++|+++.++|..++.++|+|++|++++.+++.+ ...++|++.+++++|+|
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~---------~~~l~r~i~~v~q~~~~ 224 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG---------PDGRARSVVIAAPADVS 224 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH---------HHHHHTEEEEEECTTSC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc---------ccccCceEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999876521 24578999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCC
Q psy13480 318 VAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPD 397 (615)
Q Consensus 318 ~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~ 397 (615)
+..|..+.+.++++||||+++|++|+.++|+++||+.|+|++|+++++||...|||+++++.+.+++||+++.+ +
T Consensus 225 ~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~-----~ 299 (438)
T 2dpy_A 225 PLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGI-----H 299 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCS-----T
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhcc-----C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998731 1
Q ss_pred CCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHH
Q psy13480 398 REGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKV 477 (615)
Q Consensus 398 ~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~ 477 (615)
+.||||+++||+++++|+++|++|++..+.||+|++++++++.+|||||||+.|+||+++.+.. ++|.+++.++
T Consensus 300 ~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~~~Paidv~~s~sR~~~~~~~------~~~~~~~~~l 373 (438)
T 2dpy_A 300 GGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIT------EQHYARVRLF 373 (438)
T ss_dssp TSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHHHHHTTCSSCEEEEEEEETTHHHHSC------HHHHHHHHHH
T ss_pred CCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCCHHHccCCCCcCCcccccccccccCC------HHHHHHHHHH
Confidence 3599999999999999999999999999999999999999999999999999999999987765 8999999999
Q ss_pred HHHHHhHHHHHHHHHHhcC--CCCcHHhHHHHHHHHHHHHHccCCCCCCCCCccCCHHHHHHHHHHHH
Q psy13480 478 KEILQEEEDLSEIVQLVGK--ASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 478 ~~~L~~~~el~~i~~~~g~--~~l~~~d~~il~~~~~i~~~fL~Q~~~~~~d~~~~~~kq~~~L~~I~ 543 (615)
+++|++|++++++++++|. +.+++.|++ +.+++.++ +||+|++ ++++|+++|+.+|+.|+
T Consensus 374 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-i~~~~~~~-~fl~Q~~----~~~~~~~~~~~~~~~~~ 435 (438)
T 2dpy_A 374 KQLLSSFQRNRDLVSVGAYAKGSDPMLDKA-ITLWPQLE-AFLQQGI----FERADWEDSLQALDLIF 435 (438)
T ss_dssp HHHHHHHHHGGGTSSSSCCCTTSCHHHHHH-HTTHHHHH-HHHCCCT----TCCCCHHHHHHHHHHHS
T ss_pred HHHHHhhHHHHHHHHhcCCcCCCCHHHHHH-HHHHHHHH-HHcCCCC----CCCCCHHHHHHHHHHHH
Confidence 9999999999999999875 444444554 45666665 7999996 68899999999999875
No 16
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-72 Score=599.80 Aligned_cols=264 Identities=19% Similarity=0.251 Sum_probs=245.7
Q ss_pred cccCCCCC-CccccceeeeccccccccCceeeccCCCCCCcchhhHHhhhcC---CCC-EEEEEeecCcchHHHHHHHhc
Q psy13480 215 VTEKLPAN-YPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS---NSD-VIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 215 ~~~r~~~~-~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~---~ad-viV~~~iGERg~Ev~e~~~~f 289 (615)
..+|++++ +|+.||+|+||+|+|||||||++|||++|+|||+|+++|+++. +.| .|||++||||++||++|+++|
T Consensus 148 P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~ 227 (427)
T 3l0o_A 148 PRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIREST 227 (427)
T ss_dssp CCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSC
T ss_pred chhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHh
Confidence 46788787 8999999999999999999999999999999999999998852 356 379999999999999999876
Q ss_pred ccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCC
Q psy13480 290 PELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAD 369 (615)
Q Consensus 290 ~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~ 369 (615)
. .+||+||+|+|+.+|++++|+|+|+||||||+|+|||+++||+||||+|+||||+++||+|+
T Consensus 228 ~----------------G~VV~atadep~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A~A~rEvs~~~Ge~~s- 290 (427)
T 3l0o_A 228 N----------------AIVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLT- 290 (427)
T ss_dssp C----------------SEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHSCCCSCCCS-
T ss_pred C----------------CeEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCC-
Confidence 2 28999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCC-CCCCCCchhhhhhcccceEEEecHHHHhCCCCCCCcc
Q psy13480 370 SGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPP-GGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINW 448 (615)
Q Consensus 370 eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~-ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yPAId~ 448 (615)
.||||++++.+++||||||++ +++||||+|+||+++ |||++|||+|++++|+||||+|||+||++||||||||
T Consensus 291 ~Gypp~~~~~~~~~~erA~~i------e~~GSIT~i~tvlvetgdd~~dpI~d~~~~i~dg~IvLsR~La~~giyPAIDv 364 (427)
T 3l0o_A 291 GGVDPAALYKPKRFFGAARNT------REGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINL 364 (427)
T ss_dssp SSCCSSCSHHHHHHHHTCEEE------SSSCEEEEEEEEECSSSCSHHHHHHHHTTTCCSEEEEBCHHHHTTTCSSCBCS
T ss_pred CCcCchhhcchHHHHHhhccc------CCCcceeEEEEEEecCCCCcCCcchHHhcccCCceEEEeHHHHhCCCCCccCc
Confidence 699999999999999999997 468999999999998 8999999999999999999999999999999999999
Q ss_pred CccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHhHHHH
Q psy13480 449 LISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITL 507 (615)
Q Consensus 449 l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i~~~~g~~~l~~~d~~il 507 (615)
+.|+||+++.+.. ++|++++.++|++|++|++++++.++++.-..+..+...+
T Consensus 365 l~S~SR~~~~l~~------~~h~~~a~~lr~~la~y~e~e~l~~ll~~~~~t~~n~~f~ 417 (427)
T 3l0o_A 365 LLSGTRREELLLD------EETLKKVWLLRRMLSAMTEEEGLTLILNKLSETSSNEEFL 417 (427)
T ss_dssp TTCEETTGGGTSC------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSHHHHH
T ss_pred cccccccccccCC------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCHHHHH
Confidence 9999999999877 8999999999999999999999999987655555555533
No 17
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=1.7e-70 Score=585.05 Aligned_cols=272 Identities=19% Similarity=0.243 Sum_probs=246.5
Q ss_pred eeeecccccCCCCCcccCCCCC----CccccceeeeccccccccCceeeccCCCCCCcchhhHHhhhcC---CCCE-EEE
Q psy13480 201 YTMVQVWPVRQPRPVTEKLPAN----YPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS---NSDV-IVY 272 (615)
Q Consensus 201 ~~~~q~wPvr~~rp~~~r~~~~----~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~---~adv-iV~ 272 (615)
+...+..|++. .+|+.+. +|+.||+|+||.++||++||+++|+|++|+|||+|+++|+++. +.|+ |||
T Consensus 134 i~Fe~ltp~yP----~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~ 209 (422)
T 3ice_A 134 ILFENLTPLHA----NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV 209 (422)
T ss_dssp CCTTTSCEESC----CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred ceeccccccCC----CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEE
Confidence 33344455552 2344455 7999999999999999999999999999999999999998852 3454 889
Q ss_pred EeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHH
Q psy13480 273 VGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRW 352 (615)
Q Consensus 273 ~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~ 352 (615)
++||||++||++|++++ |+++|+||+|+|+.+|.+++++|+|+||||||+|+||||++||+|||
T Consensus 210 ~lIGER~~Ev~~~~~~~----------------~~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 210 LLIDERPEEVTEMQRLV----------------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp EEESSCHHHHHHHHTTC----------------SSEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred EEecCChHHHHHHHHHh----------------CeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 99999999999999765 37999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCC-CCCCCCchhhhhhcccceEE
Q psy13480 353 AEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPP-GGDFSDPVTSATLGIVQVFW 431 (615)
Q Consensus 353 AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~-ggD~s~PV~~~t~~i~dg~i 431 (615)
|+|+||||+++||+|+ +|||+++|+.+++||||||++ +++||||+|+||++| |||++|||++++++|+||||
T Consensus 274 A~A~revs~~~Ge~ps-~Gyp~~~~~~~~rl~erA~~~------~~~GSIT~i~tvlv~tgdd~~dpI~d~~~~i~dg~i 346 (422)
T 3ice_A 274 ARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 346 (422)
T ss_dssp HHHHHHHSCCSSCBCS-SSCBHHHHHHHHHHHTTCEEE------SSSCEEEEEEEECCSSSCHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHhcCCCCC-CCcCHHHHhhhHHHHHhcccc------CCCcceeEEEEEEecCCCcccchHHHHhcccCCceE
Confidence 9999999999999998 999999999999999999997 468999999999999 99999999999999999999
Q ss_pred EecHHHHhCCCCCCCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHhHH
Q psy13480 432 GLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKI 505 (615)
Q Consensus 432 ~Ldr~La~~g~yPAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i~~~~g~~~l~~~d~~ 505 (615)
+|||+||++||||||||+.|+||+++.+.. ++|++++.++|++|++|++++++.++++.-.-......
T Consensus 347 vLsR~La~~giyPAIDvl~S~SR~~~~~~~------~~~~~~a~~lr~~la~~~e~~~~~~ll~~~~~t~~n~~ 414 (422)
T 3ice_A 347 HLSRKIAEKRVFPAIDYNRSGTRKEELLTT------QEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 414 (422)
T ss_dssp EBCHHHHHTTCSSCBCTTTCEESSGGGSSC------HHHHHHHHHHHHHHTTSCHHHHHHHHHHTTTTSCHHHH
T ss_pred EEcHHHHhcCCCCccCccccccccchhhCC------HHHHHHHHHHHHHHHhCchHHHHHHHHHHhhcCCCHHH
Confidence 999999999999999999999999999876 89999999999999999999999999976554444433
No 18
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=1.2e-65 Score=543.59 Aligned_cols=310 Identities=26% Similarity=0.436 Sum_probs=286.3
Q ss_pred ccccCCCCC-cccCCCCCCccccceeeeccccccccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHH
Q psy13480 206 VWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAE 284 (615)
Q Consensus 206 ~wPvr~~rp-~~~r~~~~~pl~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e 284 (615)
+||++.++| +.++..+++++.||+++||.+|||++||+++|+|++|+|||||+++|+++.+.|+.++.++|+|++|+++
T Consensus 35 ~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~ 114 (347)
T 2obl_A 35 ERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNE 114 (347)
T ss_dssp EEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHH
T ss_pred cccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHH
Confidence 467776664 7888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcC
Q psy13480 285 VLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLA 364 (615)
Q Consensus 285 ~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lg 364 (615)
++..++ ...++|++++++++++|+.+|..++++++++||||+|+|+||++++|+++|||.|+||+|++++
T Consensus 115 ~i~~~~----------~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~lal~ 184 (347)
T 2obl_A 115 FLALLP----------QSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASG 184 (347)
T ss_dssp HHTTSC----------HHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTT
T ss_pred HHHhhh----------hhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHcC
Confidence 886632 2457899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchhhhHHHHHHhhccccccCCCCCCCceEEEEeecCCCCCCCCchhhhhhcccceEEEecHHHHhCCCCC
Q psy13480 365 EMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFP 444 (615)
Q Consensus 365 E~P~~eGYP~~l~s~La~~~ERAG~~~~~~~~~~~GSIT~i~~Vs~~ggD~s~PV~~~t~~i~dg~i~Ldr~La~~g~yP 444 (615)
+||...|||+++++.+++|+||+++. ++||||+|+||+++++|+++|++|++..+.||+|+||+++++.+|||
T Consensus 185 ~p~~t~Gldp~~~~~l~~ller~~~~-------~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Ivl~~~l~~~~~~P 257 (347)
T 2obl_A 185 EPDVRGGFPPSVFSSLPKLLERAGPA-------PKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTRELAEENHFP 257 (347)
T ss_dssp CCCCBTTBCHHHHHHHHHHHTTCEEC-------SSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEEBCHHHHTTTCSS
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhCC-------CCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEEEeCCHHHcCCCC
Confidence 99999999999999999999999872 46999999999999999999999999999999999999999999999
Q ss_pred CCccCccccchhcchhhhhhccCcchHHHHHHHHHHHHhHHHHHHHHHHhcCCCCcHHh-HHHHHHHHHHHHHccCCCCC
Q psy13480 445 SINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESD-KITLEVAKLLKDDFLQQNSY 523 (615)
Q Consensus 445 AId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~el~~i~~~~g~~~l~~~d-~~il~~~~~i~~~fL~Q~~~ 523 (615)
||||+.|+||+++.+.. ++|++++.++|++|++|++++++++++|...+++.+ +..+++++.++ +||+|++
T Consensus 258 aid~~~S~sr~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fl~Q~~- 329 (347)
T 2obl_A 258 AIDIGLSASRVMHNVVT------SEHLRAAAECKKLIATYKNPELLIRIGEYTMGQDPEADKAIKNRKLIQ-NFIQQST- 329 (347)
T ss_dssp CBCGGGCEETTHHHHSC------HHHHHHHHHHHHHHHHCCCTHHHHTTTCCCCCSCHHHHHHHHTHHHHH-HHHCCCT-
T ss_pred CcCccccccccccccCC------HHHHHHHHHHHHHHHccHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH-HHhCCCC-
Confidence 99999999999999876 899999999999999999999999998865554554 56677888775 7999996
Q ss_pred CCCCccCCHHHHHHHHHHHH
Q psy13480 524 SPYDRFCPFYKTVGMLRNMI 543 (615)
Q Consensus 524 ~~~d~~~~~~kq~~~L~~I~ 543 (615)
+++||+++|+.+|+.|+
T Consensus 330 ---~~~~~~~~~~~~~~~~~ 346 (347)
T 2obl_A 330 ---KDISSYEKTIESLFKVV 346 (347)
T ss_dssp ---TCCCCHHHHHHHHHHHT
T ss_pred ---CCCCCHHHHHHHHHHHh
Confidence 68899999999999875
No 19
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.26 E-value=0.00099 Score=69.60 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=74.6
Q ss_pred CCccccceeeecccc--ccccCceeeccCCCCCCcchhhHHhhhcCC--------CCEEEEEeecCc--chHHHHHHHhc
Q psy13480 222 NYPLLTGQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALSKYSN--------SDVIVYVGCGER--GNEMAEVLRDF 289 (615)
Q Consensus 222 ~~pl~TG~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~--------adviV~~~iGER--g~Ev~e~~~~f 289 (615)
...+.||+..+|.++ -+-+|..+.|.|++|+|||+++.+++..+. ..-++|+..-+. ...+.+..+.+
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 456889999999998 588999999999999999999999987521 234677755442 44555555554
Q ss_pred ccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhC-CCcEEEEeeCchHHHHH
Q psy13480 290 PELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDM-GYNVSMMADSTSRWAEA 355 (615)
Q Consensus 290 ~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~-G~~Vll~~Ds~tR~AeA 355 (615)
.- + ...++++ +.+....+-.-..... -.+.+.++.. +.--+|++||++.|..+
T Consensus 181 g~-----~--~~~~l~~-l~~~~~~~~e~~~~ll-----~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 181 NV-----D--HDAVLDN-VLYARAYTSEHQMELL-----DYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp TC-----C--HHHHHHT-EEEEECCSTTHHHHHH-----HHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CC-----C--HHHHHhc-eeEeecCCHHHHHHHH-----HHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 21 0 0233445 3444433322111110 1233444452 33447899999988754
No 20
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.25 E-value=0.00071 Score=64.60 Aligned_cols=41 Identities=32% Similarity=0.461 Sum_probs=37.5
Q ss_pred Cccccceeeecccc--ccccCceeeccCCCCCCcchhhHHhhh
Q psy13480 223 YPLLTGQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 223 ~pl~TG~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
+.+.||+..+|.++ -+.+|+.++|.|++|+|||||+.+|+.
T Consensus 5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999887 688999999999999999999999976
No 21
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.18 E-value=0.00062 Score=65.68 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=49.1
Q ss_pred Cccccceeeecccc--ccccCceeeccCCCCCCcchhhHHhhhc--CC------CCEEEEEeecCc--chHHHHHHHhc
Q psy13480 223 YPLLTGQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALSKY--SN------SDVIVYVGCGER--GNEMAEVLRDF 289 (615)
Q Consensus 223 ~pl~TG~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la~~--~~------adviV~~~iGER--g~Ev~e~~~~f 289 (615)
+.+-||+..+|-++ -+.+|+.++|.|++|+|||+|+.+++.. .. ..-++|+..-+. ...+.+..+.+
T Consensus 4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (243)
T 1n0w_A 4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERY 82 (243)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHT
T ss_pred eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHc
Confidence 45789999999999 5889999999999999999999999873 21 234566644331 33455555444
No 22
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.15 E-value=0.0002 Score=69.40 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=47.5
Q ss_pred ccccceeeecccc--ccccCceeeccCCCCCCcchhhHHhhh--c-CCCCEEEEEeecCcchHHHHHHH
Q psy13480 224 PLLTGQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALSK--Y-SNSDVIVYVGCGERGNEMAEVLR 287 (615)
Q Consensus 224 pl~TG~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la~--~-~~adviV~~~iGERg~Ev~e~~~ 287 (615)
.+.||+..+|.++ -+.+|+.++|.|++|+|||||+.+|+. . ....-++|+...+...+..+...
T Consensus 11 ~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T 2ehv_A 11 RVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMA 79 (251)
T ss_dssp EECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHH
T ss_pred eeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH
Confidence 5689999999988 699999999999999999999999883 2 22223555555554445544443
No 23
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.10 E-value=0.00024 Score=67.53 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=48.3
Q ss_pred cccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecC--cchHHHHHHHh
Q psy13480 225 LLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGE--RGNEMAEVLRD 288 (615)
Q Consensus 225 l~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGE--Rg~Ev~e~~~~ 288 (615)
+-||+..+|-++. +.+|+.++|.|++|+|||+++.+++. ....-++|+..-+ ....+.+..+.
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~~~~~~~~~~~~~~ 68 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEGGFSPERLVQMAET 68 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSCCCCHHHHHHHHHT
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999996 99999999999999999999999987 3333566766544 33444444433
No 24
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.02 E-value=0.0013 Score=67.99 Aligned_cols=120 Identities=21% Similarity=0.242 Sum_probs=74.1
Q ss_pred CCccccceeeecccc--ccccCceeeccCCCCCCcchhhHHhhhcCC--------CCEEEEEeecCc--chHHHHHHHhc
Q psy13480 222 NYPLLTGQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALSKYSN--------SDVIVYVGCGER--GNEMAEVLRDF 289 (615)
Q Consensus 222 ~~pl~TG~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~--------adviV~~~iGER--g~Ev~e~~~~f 289 (615)
...+-||+..+|.++ -+-+|..+.|.|++|+|||+++.+++.... ..-++|+..-+. ...+.+..+.+
T Consensus 86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999998 588999999999999999999999986531 234677655442 45566666554
Q ss_pred ccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhh-HHHHHHhCCCcEEEEeeCchHHHHH
Q psy13480 290 PELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGIT-LSEYFRDMGYNVSMMADSTSRWAEA 355 (615)
Q Consensus 290 ~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~t-iAEyfrd~G~~Vll~~Ds~tR~AeA 355 (615)
.- + ...++++ +.+....+ .... ...+. +.+.++..+.--+|++||++.+..+
T Consensus 166 g~-----~--~~~~~~~-l~~~~~~~--~~~~----~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 166 GL-----D--IDNVMNN-IYYIRAIN--TDHQ----IAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp TC-----C--HHHHHHT-EEEEECCS--HHHH----HHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CC-----C--HHHHhcc-EEEEeCCC--HHHH----HHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 21 0 0223344 34444332 1111 11122 2333444244557899999988654
No 25
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.97 E-value=0.00033 Score=66.75 Aligned_cols=65 Identities=26% Similarity=0.316 Sum_probs=49.8
Q ss_pred ccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecCcchHHHHHHHh
Q psy13480 224 PLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGERGNEMAEVLRD 288 (615)
Q Consensus 224 pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGERg~Ev~e~~~~ 288 (615)
.+-||+..+|-++. +.+|+.++|.|++|+|||||+.+++... +..-++|+..-....++.+.+..
T Consensus 4 ~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 72 (235)
T 2w0m_A 4 RLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQ 72 (235)
T ss_dssp EECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHH
T ss_pred cccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHH
Confidence 46899999999985 8999999999999999999999988531 22246777766655555555443
No 26
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.89 E-value=0.0014 Score=67.22 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=73.8
Q ss_pred CCccccceeeecccc--ccccCceeeccCCCCCCcchhhHHhhhcC-------------CC-----CEEEEEeecCc--c
Q psy13480 222 NYPLLTGQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALSKYS-------------NS-----DVIVYVGCGER--G 279 (615)
Q Consensus 222 ~~pl~TG~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la~~~-------------~a-----dviV~~~iGER--g 279 (615)
...+-||+..+|.++ -+-+|..+.|.|++|+|||+++.+++... +. .-++|+..-+. .
T Consensus 77 ~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~ 156 (322)
T 2i1q_A 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP 156 (322)
T ss_dssp CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCH
T ss_pred CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCH
Confidence 346789999999998 58899999999999999999999988642 11 34677655543 4
Q ss_pred hHHHHHHHhcccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHh-hHHHHHHhCCCcEEEEeeCchHHHHH
Q psy13480 280 NEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGI-TLSEYFRDMGYNVSMMADSTSRWAEA 355 (615)
Q Consensus 280 ~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~-tiAEyfrd~G~~Vll~~Ds~tR~AeA 355 (615)
..+.+..+.+.- + ...++++ +.++...+ .... ...+ .+.+.++..+.--+|++||++.+..+
T Consensus 157 ~~l~~~~~~~g~-----~--~~~~~~~-l~~~~~~~--~~~~----~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 157 ERIMQMAEHAGI-----D--GQTVLDN-TFVARAYN--SDMQ----MLFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHHHHHHHHHTC-----C--HHHHHHT-EEEEECSS--HHHH----HHHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred HHHHHHHHHcCC-----C--HHHHhcC-EEEEeCCC--HHHH----HHHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 556666554410 0 0223344 33444332 1111 1112 23344444244457899999988754
No 27
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.77 E-value=0.001 Score=70.47 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=43.0
Q ss_pred Cccccceeeeccccc---cccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEee
Q psy13480 223 YPLLTGQRVLDSLFP---CVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGC 275 (615)
Q Consensus 223 ~pl~TG~rviD~l~P---i~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~i 275 (615)
+.+-||+..+|.++. +.+|..+.|.|++|+|||+|+.+++... ....|+|+..
T Consensus 40 ~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 40 EVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp CEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 457899999999998 7799999999999999999999987642 2223666643
No 28
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.75 E-value=0.0025 Score=66.94 Aligned_cols=118 Identities=18% Similarity=0.219 Sum_probs=71.3
Q ss_pred CCccccceeeecccc--ccccCceeeccCCCCCCcchhhHHhhhcC--C------CCEEEEEeecCc---chHHHHHHHh
Q psy13480 222 NYPLLTGQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALSKYS--N------SDVIVYVGCGER---GNEMAEVLRD 288 (615)
Q Consensus 222 ~~pl~TG~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la~~~--~------adviV~~~iGER---g~Ev~e~~~~ 288 (615)
...+-||+..+|.++ -+-+|...+|.|++|+|||+|+++++... . -.-|||+. ||. .+.+..+.+.
T Consensus 110 ~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~-~e~~~~~~~i~~i~q~ 188 (349)
T 1pzn_A 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID-TENTFRPERIREIAQN 188 (349)
T ss_dssp CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE-SSSCCCHHHHHHHHHT
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe-CCCCCCHHHHHHHHHH
Confidence 346789999999984 68899999999999999999999998654 1 13456664 332 2445555544
Q ss_pred cccccccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhC-----CCcEEEEeeCchHHHH
Q psy13480 289 FPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDM-----GYNVSMMADSTSRWAE 354 (615)
Q Consensus 289 f~~l~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~-----G~~Vll~~Ds~tR~Ae 354 (615)
+. +. + ..++++-.+. ...+ +...+ ..+.++..+... +.-=+|++||.|-.-.
T Consensus 189 ~~-~~-~-----~~v~~ni~~~-~~~~-~~~~~-----~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 189 RG-LD-P-----DEVLKHIYVA-RAFN-SNHQM-----LLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245 (349)
T ss_dssp TT-CC-H-----HHHGGGEEEE-ECCS-HHHHH-----HHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred cC-CC-H-----HHHhhCEEEE-ecCC-hHHHH-----HHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence 31 11 1 2445554433 3221 22111 122334444332 4555789999985443
No 29
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.67 E-value=0.0013 Score=69.14 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=65.6
Q ss_pred Cccccceeeeccccc------cccCceeeccCCCCCCcchhhHHhhhcC-C---CCEEEEEeecCcchHHHHHHHhcccc
Q psy13480 223 YPLLTGQRVLDSLFP------CVLGGTTAIPGAFGCGKTVISQALSKYS-N---SDVIVYVGCGERGNEMAEVLRDFPEL 292 (615)
Q Consensus 223 ~pl~TG~rviD~l~P------i~kGq~~~I~g~~G~GKt~l~~~la~~~-~---adviV~~~iGERg~Ev~e~~~~f~~l 292 (615)
+.+-||+.-+|.++. +.+| ...|.|++|+|||+|+.+++... . -..|+|+-.-+.-+-. ..+.+-
T Consensus 5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~--ra~~lG-- 79 (333)
T 3io5_A 5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA--YLRSMG-- 79 (333)
T ss_dssp -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH--HHHHTT--
T ss_pred CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH--HHHHhC--
Confidence 356899999999998 7889 99999999999999998876432 1 3468887654443322 233331
Q ss_pred cccccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHH--HhCCCcEEEEeeCchH
Q psy13480 293 TIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYF--RDMGYNVSMMADSTSR 351 (615)
Q Consensus 293 ~~~~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyf--rd~G~~Vll~~Ds~tR 351 (615)
. -.++ ++++...+- +.. ++.+++.+ -..+.--+|++||++-
T Consensus 80 ---v------d~d~-llv~~~~~~---E~~-----~l~i~~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 80 ---V------DPER-VIHTPVQSL---EQL-----RIDMVNQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp ---C------CGGG-EEEEECSBH---HHH-----HHHHHHHHHTCCTTCCEEEEEECSTT
T ss_pred ---C------CHHH-eEEEcCCCH---HHH-----HHHHHHHHHHhhccCceEEEEecccc
Confidence 1 1233 344433221 111 13344444 2346667899999973
No 30
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.41 E-value=0.0058 Score=65.62 Aligned_cols=41 Identities=32% Similarity=0.462 Sum_probs=37.7
Q ss_pred CCccccceeeecccc--ccccCceeeccCCCCCCcchhhHHhh
Q psy13480 222 NYPLLTGQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALS 262 (615)
Q Consensus 222 ~~pl~TG~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la 262 (615)
...+.||+..+|.++ -+-+|..++|.|++|+|||+|+++++
T Consensus 157 ~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 157 LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 457899999999998 68899999999999999999999876
No 31
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.38 E-value=0.0015 Score=63.05 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=48.2
Q ss_pred ccccceeeecccc--ccccCceeeccCCCCCCcchhhHHhhhc-C-CCCEEEEEeecCcchHHHHHHH
Q psy13480 224 PLLTGQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALSKY-S-NSDVIVYVGCGERGNEMAEVLR 287 (615)
Q Consensus 224 pl~TG~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la~~-~-~adviV~~~iGERg~Ev~e~~~ 287 (615)
.+-||+..+|-++ -+.+|+..+|.|++|+|||+++.+++.. . ...-++|+..-+...++.+.+.
T Consensus 4 ~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 4 RVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp EECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHH
T ss_pred cccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHH
Confidence 4679999999986 5789999999999999999998877643 1 2224777776665556655554
No 32
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.37 E-value=0.0039 Score=65.59 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=66.7
Q ss_pred CCccccceeeeccccc---cccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecCcchHHHHHHHhcccccccc
Q psy13480 222 NYPLLTGQRVLDSLFP---CVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGERGNEMAEVLRDFPELTIEV 296 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P---i~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGERg~Ev~e~~~~f~~l~~~~ 296 (615)
.+.+-||+.-+|.++. +-+|..+.|.|++|+|||+|+.+++... ....++|+..-+..+.. ..+.+-
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~--~a~~lG------ 110 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE--YAKKLG------ 110 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHTT------
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH--HHHHcC------
Confidence 3468999999999986 6699999999999999999999887532 22346666654433322 222221
Q ss_pred cCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHH
Q psy13480 297 DGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWA 353 (615)
Q Consensus 297 ~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~A 353 (615)
. -.++ +.+....+ .. -.+.+++.+...+.--+|++||++.+.
T Consensus 111 --~---~~~~-l~i~~~~~---~e------~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 111 --V---DTDS-LLVSQPDT---GE------QALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp --C---CGGG-CEEECCSS---HH------HHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred --C---CHHH-eEEecCCC---HH------HHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 0 0122 22333221 11 123456655544444578999998553
No 33
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.37 E-value=0.0019 Score=62.30 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=51.9
Q ss_pred ccccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhc--CC-CCEEEEEeecCcchHHHHHHHh
Q psy13480 224 PLLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKY--SN-SDVIVYVGCGERGNEMAEVLRD 288 (615)
Q Consensus 224 pl~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~--~~-adviV~~~iGERg~Ev~e~~~~ 288 (615)
-+-||+.-+|-++. +-+|+.+.|.|++|+|||+++.+++.+ .+ -..++|+..-+...++.+-+..
T Consensus 11 ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 11 RVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp EECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHT
T ss_pred eecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHH
Confidence 36899999999997 899999999999999999999988643 22 2357788888877776665544
No 34
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.05 E-value=0.0028 Score=59.13 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=27.7
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
++++.+|..++|.|++|+||||++..|+...+..
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g 36 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALANLPGVP 36 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHTCSSSC
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 4567899999999999999999999999875444
No 35
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.97 E-value=0.0061 Score=64.69 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=67.3
Q ss_pred CCccccceeeeccccc---cccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecCcchHHHHHHHhcccccccc
Q psy13480 222 NYPLLTGQRVLDSLFP---CVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGERGNEMAEVLRDFPELTIEV 296 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P---i~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGERg~Ev~e~~~~f~~l~~~~ 296 (615)
.+.+-||+.-+|.++. +-+|..+.|.|++|+|||+|+.+++... .-.-|+|+..-+..... ..+.+.
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~--~a~~~g------ 123 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV--YARALG------ 123 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHTT------
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH--HHHHcC------
Confidence 3568999999999987 6799999999999999999999887642 11246666655433332 233321
Q ss_pred cCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHH
Q psy13480 297 DGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWA 353 (615)
Q Consensus 297 ~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~A 353 (615)
. . .++ ++|..+.+ .+ ..+.+++.+...+.--+|++||++.|.
T Consensus 124 --~--d-~~~-l~i~~~~~---~e------~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 124 --V--N-TDE-LLVSQPDN---GE------QALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp --C--C-GGG-CEEECCSS---HH------HHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred --C--C-HHH-ceeecCCc---HH------HHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 0 0 122 23333321 11 223445555544444468899998553
No 36
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.92 E-value=0.0075 Score=63.70 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=43.0
Q ss_pred CCccccceeeeccccc---cccCceeeccCCCCCCcchhhHHhhhcC-CC-CEEEEEee
Q psy13480 222 NYPLLTGQRVLDSLFP---CVLGGTTAIPGAFGCGKTVISQALSKYS-NS-DVIVYVGC 275 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P---i~kGq~~~I~g~~G~GKt~l~~~la~~~-~a-dviV~~~i 275 (615)
.+.+-||+..+|.++. +-+|..+.|.|++|+|||+|+.+++... .. .-++|+-.
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3467899999999987 7799999999999999999999887542 11 23556554
No 37
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.28 E-value=0.006 Score=57.36 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=24.7
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.+.+|..++|.||+|+|||||+..|+...
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999999998763
No 38
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.17 E-value=0.0055 Score=61.74 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=34.9
Q ss_pred cccc-ceeeeccc-cccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 224 PLLT-GQRVLDSL-FPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 224 pl~T-G~rviD~l-~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-+-| |..++|-+ +.+.+|+.++|.|++|+|||||+.+|+..
T Consensus 16 ~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 16 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3567 88888854 57889999999999999999999998764
No 39
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.15 E-value=0.0065 Score=58.12 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=24.4
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
++.+|+.++|.|++|+|||||+..|+...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999999999998764
No 40
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.03 E-value=0.0085 Score=59.32 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=31.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-..+
T Consensus 23 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 344789999999999999999999999999865554
No 41
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.01 E-value=0.0072 Score=58.74 Aligned_cols=32 Identities=19% Similarity=-0.026 Sum_probs=24.4
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|+.++|.||+|+|||||+..|+...
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34678899999999999999999999998754
No 42
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.90 E-value=0.01 Score=55.14 Aligned_cols=29 Identities=28% Similarity=0.181 Sum_probs=25.3
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.+.+|..++|.|++|||||+|+..+++..
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999988653
No 43
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.85 E-value=0.26 Score=47.79 Aligned_cols=28 Identities=29% Similarity=0.224 Sum_probs=23.8
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.-+|..++|.||+|+|||||+..|++.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4457889999999999999999988754
No 44
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.79 E-value=0.0096 Score=56.55 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=24.1
Q ss_pred ccceeeeccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 226 LTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 226 ~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.|+--+.+.+++..+|..++|.|++|+||||++..|++..
T Consensus 14 ~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 14 GTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CchhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3444556666777889999999999999999999998753
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.71 E-value=0.018 Score=62.59 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=36.8
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHh
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRD 288 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~ 288 (615)
+...+.|.|++|||||++++.|++..+...+-+.+.+....++.+.++.
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~ 97 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIER 97 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHH
Confidence 3345899999999999999999998888766555555545556555544
No 46
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.65 E-value=0.01 Score=58.21 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=31.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+.....+
T Consensus 22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 22 GISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp EEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 345789999999999999999999999999765544
No 47
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.58 E-value=0.011 Score=55.28 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=27.6
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=|.+.+|+.+++.|+.|+|||||+..|+..-
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3577999999999999999999999998753
No 48
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.57 E-value=0.053 Score=55.30 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=53.5
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcC-------CCC-EEEEEeecCcchH---HHHHHHhcccccccccCccccCcceE
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYS-------NSD-VIVYVGCGERGNE---MAEVLRDFPELTIEVDGVTESIMKRT 307 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~-------~ad-viV~~~iGERg~E---v~e~~~~f~~l~~~~~g~~~~~m~rt 307 (615)
..+..+.|.|++|+|||++++.+++.. ..+ .++++-|..-... +.++++.+.. ..|.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~-~~~~----------- 109 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGV-RVPF----------- 109 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSC-CCCS-----------
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCC-CCCC-----------
Confidence 567789999999999999999998753 113 3677777653321 2233333310 0000
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHH
Q psy13480 308 TLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAE 354 (615)
Q Consensus 308 vlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~Ae 354 (615)
...+...-. -.+.++++..|..++|++|++.+...
T Consensus 110 ------~~~~~~~~~------~~l~~~l~~~~~~~vlilDEi~~l~~ 144 (387)
T 2v1u_A 110 ------TGLSVGEVY------ERLVKRLSRLRGIYIIVLDEIDFLPK 144 (387)
T ss_dssp ------SCCCHHHHH------HHHHHHHTTSCSEEEEEEETTTHHHH
T ss_pred ------CCCCHHHHH------HHHHHHHhccCCeEEEEEccHhhhcc
Confidence 111121111 12334555678899999999986643
No 49
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.56 E-value=0.013 Score=58.99 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=30.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-..+
T Consensus 24 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 24 GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 345688999999999999999999999999865544
No 50
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.54 E-value=0.012 Score=59.39 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=29.7
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..-..
T Consensus 30 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp EEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3478999999999999999999999999876443
No 51
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.53 E-value=0.013 Score=58.55 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=31.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+.....+
T Consensus 27 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 27 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 345789999999999999999999999999875554
No 52
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.52 E-value=0.012 Score=56.28 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=24.5
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..+|..++|.|++|+|||||+..|+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999998865
No 53
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.50 E-value=0.022 Score=71.02 Aligned_cols=111 Identities=14% Similarity=0.183 Sum_probs=74.0
Q ss_pred CCccccceeeeccccc---cccCceeeccCCCCCCcchhhHHhhhc-CCCC-EEEEEeecCcchHHHHHHHhcccccccc
Q psy13480 222 NYPLLTGQRVLDSLFP---CVLGGTTAIPGAFGCGKTVISQALSKY-SNSD-VIVYVGCGERGNEMAEVLRDFPELTIEV 296 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P---i~kGq~~~I~g~~G~GKt~l~~~la~~-~~ad-viV~~~iGERg~Ev~e~~~~f~~l~~~~ 296 (615)
.+.+-||+..+|.++. +-+|..+.|.|++|||||+++.+++.. +..+ -++|+.+-+..++.. .+.+. .
T Consensus 12 ~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~--~~~lg-----~ 84 (1706)
T 3cmw_A 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKLG-----V 84 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH--HHHTT-----C
T ss_pred CcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHH--HHhhc-----c
Confidence 4578999999999975 889999999999999999999998753 2222 488888877665554 33331 0
Q ss_pred cCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHH
Q psy13480 297 DGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEA 355 (615)
Q Consensus 297 ~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeA 355 (615)
-+++-. +... + ..+. ...+.+.+...+..-+|++||+|-|...
T Consensus 85 ------dl~~i~-i~~p-~--t~e~------l~~ll~~L~~~~~~~LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 85 ------DIDNLL-CSQP-D--TGEQ------ALEICDALARSGAVDVIVVDSVAALTPK 127 (1706)
T ss_dssp ------CGGGCE-EECC-S--SHHH------HHHHHHHHHHHTCCSEEEESCSTTCCCH
T ss_pred ------Ccccee-eecc-C--cHHH------HHHHHHHHHhccCCCEEEEcchhhhccc
Confidence 012222 2322 1 1111 2344556665566678999999977653
No 54
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.49 E-value=0.014 Score=58.39 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=31.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-..+
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp EECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 345789999999999999999999999999865544
No 55
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.47 E-value=0.087 Score=53.94 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=28.9
Q ss_pred eeeccCCCCCCcchhhHHhhhcCCC--C-EEEEEeecCcc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSNS--D-VIVYVGCGERG 279 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~a--d-viV~~~iGERg 279 (615)
.+.|.|++|+|||++++.+++.... + .++++-|....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 7999999999999999999875432 2 47777776543
No 56
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.46 E-value=0.012 Score=58.46 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=29.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-
T Consensus 23 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 23 GITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344689999999999999999999999998754
No 57
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.45 E-value=0.012 Score=57.02 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=21.0
Q ss_pred cccccCceeeccCCCCCCcchhhHHhh-hc
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALS-KY 264 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la-~~ 264 (615)
|.+.+|..++|.||+|+|||||+..|+ ..
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 457789999999999999999999999 65
No 58
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.45 E-value=0.02 Score=56.03 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=26.8
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcCCCCEE
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVI 270 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~advi 270 (615)
+.+.+| ++|.|++|||||+|++.|++......+
T Consensus 46 ~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~~~~i 78 (254)
T 1ixz_A 46 ARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFI 78 (254)
T ss_dssp CCCCSE--EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCCCe--EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 345566 899999999999999999987766533
No 59
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.44 E-value=0.014 Score=54.76 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=24.9
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.+.+|..++|.|++||||||++..|+..-
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999998765
No 60
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.39 E-value=0.014 Score=59.41 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=31.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+.....+
T Consensus 26 ~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~ 61 (275)
T 3gfo_A 26 GINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61 (275)
T ss_dssp EEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 345789999999999999999999999999865554
No 61
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.34 E-value=0.015 Score=57.66 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=30.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+.....+
T Consensus 24 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344688999999999999999999999998865444
No 62
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.33 E-value=0.015 Score=57.24 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=30.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-..+
T Consensus 26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 61 (229)
T 2pze_A 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61 (229)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 345688999999999999999999999998765443
No 63
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.32 E-value=0.015 Score=57.74 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=29.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp EEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34468899999999999999999999999876443
No 64
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.31 E-value=0.016 Score=58.60 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=31.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+.....+
T Consensus 42 ~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Confidence 345788999999999999999999999999865554
No 65
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.31 E-value=0.015 Score=57.11 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=30.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+.....+
T Consensus 27 ~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp EEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344688999999999999999999999999865554
No 66
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.31 E-value=0.014 Score=61.84 Aligned_cols=39 Identities=36% Similarity=0.517 Sum_probs=32.3
Q ss_pred eee-ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 230 RVL-DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 230 rvi-D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.++ |.=|.+.+|+.++|.||+|||||||+.+|+..-..+
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 344 556789999999999999999999999998765444
No 67
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.31 E-value=0.036 Score=70.17 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=74.4
Q ss_pred CCCccccceeeeccccc---cccCceeeccCCCCCCcchhhHHhhhc-CCC-CEEEEEeecCcchHHHHHHHhccccccc
Q psy13480 221 ANYPLLTGQRVLDSLFP---CVLGGTTAIPGAFGCGKTVISQALSKY-SNS-DVIVYVGCGERGNEMAEVLRDFPELTIE 295 (615)
Q Consensus 221 ~~~pl~TG~rviD~l~P---i~kGq~~~I~g~~G~GKt~l~~~la~~-~~a-dviV~~~iGERg~Ev~e~~~~f~~l~~~ 295 (615)
..+.+-||+..+|.++. +-+|....|.|++|+|||+++.+++.. ... .-|+|+-.-+..++.. .+.|-
T Consensus 11 ~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~~~Ge~vlYI~tEes~~~~r--a~~lG----- 83 (2050)
T 3cmu_A 11 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKLG----- 83 (2050)
T ss_dssp -CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH--HHHTT-----
T ss_pred CCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhhccCCceEEEEccCcchhhH--Hhhhc-----
Confidence 34578999999999874 779999999999999999999998643 222 3589998887666654 33331
Q ss_pred ccCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHH
Q psy13480 296 VDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAE 354 (615)
Q Consensus 296 ~~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~Ae 354 (615)
. . +++-. +... +. .+ ..+.+.+++...+.--+|++||+|-...
T Consensus 84 ~-----d-l~~i~-v~~p-~~--~e------~ll~il~~L~~~~~~~lVVIDSISaL~~ 126 (2050)
T 3cmu_A 84 V-----D-IDNLL-CSQP-DT--GE------QALEICDALARSGAVDVIVVDSVAALTP 126 (2050)
T ss_dssp C-----C-TTTCE-EECC-SS--HH------HHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred c-----C-cccce-ecCC-Cc--HH------HHHHHHHHHHhccCCcEEEEcChHHhhh
Confidence 1 1 23322 3322 11 11 2235566776666677899999985443
No 68
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.22 E-value=0.016 Score=54.86 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=24.5
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.+.+|..++|.|++||||||+...|++.-+
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4567889999999999999999999997543
No 69
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.21 E-value=0.017 Score=58.42 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=31.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-..+
T Consensus 37 ~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 37 GLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 345689999999999999999999999999875544
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.19 E-value=0.013 Score=54.66 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=24.2
Q ss_pred cccccCceeeccCCCCCCcchhhHHhh
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALS 262 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la 262 (615)
|.+.+|+.++|.|++|+|||||+..+.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 578899999999999999999999643
No 71
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.19 E-value=0.018 Score=58.01 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=30.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+.....+
T Consensus 33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344788999999999999999999999999865544
No 72
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.18 E-value=0.0096 Score=59.62 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=35.7
Q ss_pred CCCccccceeeeccccc-cccCceeeccCCCCCCcchhhHHhhh
Q psy13480 221 ANYPLLTGQRVLDSLFP-CVLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 221 ~~~pl~TG~rviD~l~P-i~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
..+.+-||+.-+|.+++ +-+|+.++|.|++|+|||||+.+++.
T Consensus 9 ~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 9 ILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp HHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45567888888877654 55999999999999999999998874
No 73
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.17 E-value=0.017 Score=58.91 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=31.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-..+
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 445789999999999999999999999999865544
No 74
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.15 E-value=0.023 Score=58.89 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=52.4
Q ss_pred cCceeec--cCCCCCCcchhhHHhhhcCCC-------C-EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEE
Q psy13480 240 LGGTTAI--PGAFGCGKTVISQALSKYSNS-------D-VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTL 309 (615)
Q Consensus 240 kGq~~~I--~g~~G~GKt~l~~~la~~~~a-------d-viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvl 309 (615)
.++.+.| .|++|+|||+|++.+++.... + .++|+-|.+.. ...+++..+-+. + |. ..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~-l---~~--~~------ 115 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP-NLYTILSLIVRQ-T---GY--PI------ 115 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC-SHHHHHHHHHHH-H---TC--CC------
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC-CHHHHHHHHHHH-h---CC--CC------
Confidence 4567777 999999999999998764321 3 37888876433 344555443110 0 00 00
Q ss_pred EEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHH
Q psy13480 310 VANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRW 352 (615)
Q Consensus 310 vanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~ 352 (615)
.....+... ..-.+.+++...++.++|++|++-..
T Consensus 116 --~~~~~~~~~------~~~~l~~~l~~~~~~~llvlDe~~~l 150 (412)
T 1w5s_A 116 --QVRGAPALD------ILKALVDNLYVENHYLLVILDEFQSM 150 (412)
T ss_dssp --CCTTCCHHH------HHHHHHHHHHHHTCEEEEEEESTHHH
T ss_pred --CCCCCCHHH------HHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 001112211 11223445555688999999999654
No 75
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.15 E-value=0.09 Score=53.46 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=54.3
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCC-----CCEEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeC
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSN-----SDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANT 313 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~-----adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanT 313 (615)
..++.+.|.|++|+|||+|++.+++... .-.++|+-|.... ...+++..+-+. + |. .. ..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~i~~~-l---~~--~~--------~~ 107 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID-TPYRVLADLLES-L---DV--KV--------PF 107 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-SHHHHHHHHTTT-T---SC--CC--------CS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-CHHHHHHHHHHH-h---CC--CC--------CC
Confidence 4577899999999999999999987431 1247777776533 333444443110 0 00 00 00
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHH
Q psy13480 314 SNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWA 353 (615)
Q Consensus 314 sn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~A 353 (615)
...+..... -.+.+++...|..++|++|+.....
T Consensus 108 ~~~~~~~~~------~~l~~~l~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 108 TGLSIAELY------RRLVKAVRDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp SSCCHHHHH------HHHHHHHHTCCSCEEEEEETHHHHH
T ss_pred CCCCHHHHH------HHHHHHHhccCCeEEEEEcChhhhh
Confidence 111222111 1233455667889999999987543
No 76
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.13 E-value=0.018 Score=61.55 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=31.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|||||||+..|+..-..+
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 56 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT 56 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC
Confidence 445789999999999999999999999999865554
No 77
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.11 E-value=0.014 Score=60.54 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=29.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|.-|.+.+|++++|.|++|+|||||+..|+..-
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456789999999999999999999999998765
No 78
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.10 E-value=0.019 Score=60.87 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=31.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|||||||+..|+.....+
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT 56 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC
Confidence 556789999999999999999999999998765444
No 79
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.09 E-value=0.019 Score=57.87 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=31.0
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+.....+
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~ 60 (266)
T 2yz2_A 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 60 (266)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 344789999999999999999999999999865544
No 80
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.07 E-value=0.018 Score=57.72 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=30.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-..+
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 58 (253)
T 2nq2_C 23 QLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI 58 (253)
T ss_dssp EEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344788999999999999999999999998764433
No 81
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.07 E-value=0.019 Score=60.90 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=31.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|||||||+..|+.....+
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT 56 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 455789999999999999999999999999876555
No 82
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.07 E-value=0.021 Score=57.65 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=25.6
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.+.+| +++.||+|||||+|+..||......
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~~ 71 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESGLN 71 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcCCC
Confidence 45566 9999999999999999999876665
No 83
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.06 E-value=0.015 Score=57.99 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=28.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 21 GVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478999999999999999999999999985
No 84
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.04 E-value=0.018 Score=60.85 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=31.4
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|||||||+..|+.....+
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 68 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT 68 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 556789999999999999999999999999765554
No 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.04 E-value=0.017 Score=56.83 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=24.4
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=|.+.+|..+||.||.|+|||||+..|+..
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999999999874
No 86
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.04 E-value=0.016 Score=58.50 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=28.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..
T Consensus 38 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 38 GLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478999999999999999999999999885
No 87
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.03 E-value=0.016 Score=58.29 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=29.0
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.=|.+.+|+.++|.|++|+|||||+..|+..-.
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 446889999999999999999999999987643
No 88
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.01 E-value=0.017 Score=57.93 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=30.8
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+.....+
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 445788999999999999999999999998765443
No 89
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.97 E-value=0.02 Score=60.87 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=31.4
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|||||||+..|+..-..+
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 64 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT 64 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 455789999999999999999999999999865544
No 90
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.96 E-value=0.013 Score=54.89 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=29.5
Q ss_pred eeeccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 230 RVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 230 rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+++. |++.+|.+++|.|++|+|||||+..|+..
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45555 89999999999999999999999988754
No 91
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.94 E-value=0.017 Score=55.24 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=21.6
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+|..++|.||+|+|||||+..|+..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999999874
No 92
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.94 E-value=0.019 Score=53.74 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.4
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+|..++|.||+|+|||||+..|++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999999998753
No 93
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.92 E-value=0.02 Score=60.85 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=31.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|||||||+..|+.....+
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS 56 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC
Confidence 556789999999999999999999999999876555
No 94
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.83 E-value=0.16 Score=50.14 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=25.9
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
+..+|..+.+.|++|+||||+...|++.-+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4556778899999999999999999986543
No 95
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.82 E-value=0.015 Score=60.19 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=31.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|++++|.|++|+|||||+..|+..-..+
T Consensus 72 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 72 DVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp EEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred eeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 344789999999999999999999999999876555
No 96
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.78 E-value=0.098 Score=53.66 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=28.0
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCCCE-EEEEeec
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNSDV-IVYVGCG 276 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~adv-iV~~~iG 276 (615)
|..+.|.|++|||||++++.+++....++ .+.+.|.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 56799999999999999999998766653 3444433
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.76 E-value=0.016 Score=58.34 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=28.3
Q ss_pred eeccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 231 VLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 231 viD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++-+. +.+|+.++|.|++|+|||||+..|+..
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 444444 889999999999999999999999875
No 98
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.67 E-value=0.025 Score=58.18 Aligned_cols=61 Identities=20% Similarity=0.103 Sum_probs=45.6
Q ss_pred Cccccceeeeccccc-cccCceeeccCCCCCCcchhhHHhhhc-CCC-CEEEEEeecCcchHHH
Q psy13480 223 YPLLTGQRVLDSLFP-CVLGGTTAIPGAFGCGKTVISQALSKY-SNS-DVIVYVGCGERGNEMA 283 (615)
Q Consensus 223 ~pl~TG~rviD~l~P-i~kGq~~~I~g~~G~GKt~l~~~la~~-~~a-dviV~~~iGERg~Ev~ 283 (615)
..+-||+..+|.++- +.+|..+.|.|++|+|||+++.+++.+ +.. .-++|+..-+...++.
T Consensus 49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~ 112 (315)
T 3bh0_A 49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENI 112 (315)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHH
T ss_pred CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHH
Confidence 457899999998874 779999999999999999999998753 222 2455665555444443
No 99
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.64 E-value=0.02 Score=55.84 Aligned_cols=31 Identities=23% Similarity=0.155 Sum_probs=26.7
Q ss_pred eeccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 231 VLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 231 viD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++|. +.+|+.++|.|++|+|||||+..|+..
T Consensus 15 ~l~~---i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 15 YVDA---IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHH---HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHh---ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4555 479999999999999999999988764
No 100
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.61 E-value=0.017 Score=60.86 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=31.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|||||||+..|+.....+
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 53 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD 53 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC
Confidence 455789999999999999999999999998765544
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.55 E-value=0.02 Score=54.29 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=23.3
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..+|..++|.|++|+|||||+..|+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999875
No 102
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.53 E-value=0.11 Score=48.44 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.0
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+.|.|++|+|||++++.+++.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 103
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.46 E-value=0.03 Score=53.65 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=25.1
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
.+|..++|.||+|+|||||+..|+.....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 46889999999999999999999876543
No 104
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.40 E-value=0.036 Score=55.32 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=26.3
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcCCCCE
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDV 269 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~adv 269 (615)
+.+.+| ++|.|++|||||+|++.|++......
T Consensus 70 ~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~~~~ 101 (278)
T 1iy2_A 70 ARIPKG--VLLVGPPGVGKTHLARAVAGEARVPF 101 (278)
T ss_dssp CCCCCE--EEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CCCCCe--EEEECCCcChHHHHHHHHHHHcCCCE
Confidence 345566 89999999999999999998776553
No 105
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.36 E-value=0.022 Score=61.01 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=29.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|++|||||||+.+|+....
T Consensus 39 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 39 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred ceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 3446899999999999999999999999997543
No 106
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.36 E-value=0.028 Score=51.66 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=23.4
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+|+.++|.|++|+|||+|+..+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999998864
No 107
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.32 E-value=0.031 Score=59.47 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=32.7
Q ss_pred eee-ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 230 RVL-DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 230 rvi-D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.++ |.=|.+.+|+.++|.|++|+|||||+..|+..-..+
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~ 81 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 81 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC
Confidence 344 455789999999999999999999999999865554
No 108
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.26 E-value=0.017 Score=60.90 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=31.1
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|||||||+..|+.....+
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 58 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 445789999999999999999999999999765554
No 109
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.24 E-value=0.033 Score=50.88 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.5
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.|..++|.|++||||||++..|++.-.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998644
No 110
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.19 E-value=0.038 Score=53.18 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=31.2
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCc-chHHHHHHHhc
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGER-GNEMAEVLRDF 289 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGER-g~Ev~e~~~~f 289 (615)
+.|.|++|+|||++..++++. .. -++|++.++. ..||.+-+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~-~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-AP-QVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CS-SEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-CC-CeEEEecCCCCCHHHHHHHHHH
Confidence 568999999999999999976 32 4799999875 55666655554
No 111
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.09 E-value=0.035 Score=51.98 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.9
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+..+|..++|.|++||||||+...|++.
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4557888999999999999999999986
No 112
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.05 E-value=0.026 Score=57.91 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=29.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+....
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3446889999999999999999999999987644
No 113
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.93 E-value=0.036 Score=56.00 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=28.6
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.=|.+. |+.++|.|++|+|||||+..|+... .+
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~ 56 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY 56 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 346788 9999999999999999999999775 54
No 114
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.91 E-value=0.032 Score=52.31 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.5
Q ss_pred CceeeccCCCCCCcchhhHHhhhcC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
|..++|.||+|+|||||+..|+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998643
No 115
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.84 E-value=0.043 Score=57.66 Aligned_cols=43 Identities=21% Similarity=0.187 Sum_probs=36.0
Q ss_pred CCccccceeeecccc-ccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 222 NYPLLTGQRVLDSLF-PCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 222 ~~pl~TG~rviD~l~-Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
...+.||+.-+|-++ -+-+|..+.|.|++|+|||+|+.+++..
T Consensus 103 ~~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 103 TGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp STTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred hhccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 445679999999987 3347778899999999999999999875
No 116
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.81 E-value=0.034 Score=52.68 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.0
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..+|..++|.|++||||||++..|++.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999874
No 117
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.79 E-value=0.21 Score=54.38 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=50.1
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC-CCC-EEEEEeecCcchHHHHHHHhcccccccccCccccCcceEEEEEeCCCCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS-NSD-VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMP 317 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~-~ad-viV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~p 317 (615)
++..+++.|++|+||||++..||.+. ... -+.++.|.-......+-+..+.+ ...-.+....+..+|
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~-----------~~gvpv~~~~~~~dp 167 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLD-----------RYHIEVFGNPQEKDA 167 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHG-----------GGTCEEECCTTCCCH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHH-----------hcCCcEEecCCCCCH
Confidence 56788999999999999999888642 222 24445555444444444444321 111223333344444
Q ss_pred HHHHHHHHHHHhhHHHHHHhCCCcEEEEeeC
Q psy13480 318 VAAREASIYTGITLSEYFRDMGYNVSMMADS 348 (615)
Q Consensus 318 ~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds 348 (615)
+..- +.+ -+++++.|+||+|+ |.
T Consensus 168 ~~i~----~~a---l~~a~~~~~DvVII-DT 190 (443)
T 3dm5_A 168 IKLA----KEG---VDYFKSKGVDIIIV-DT 190 (443)
T ss_dssp HHHH----HHH---HHHHHHTTCSEEEE-EC
T ss_pred HHHH----HHH---HHHHHhCCCCEEEE-EC
Confidence 4221 112 35566789998764 53
No 118
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.77 E-value=0.35 Score=50.12 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=33.4
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecCcchH
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGERGNE 281 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGERg~E 281 (615)
|.+.+|..++|.|+.|+||||++..||.+- ...-+.++.+.-+...
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~ 147 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAG 147 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh
Confidence 457789999999999999999999887642 2223556666655443
No 119
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.71 E-value=0.058 Score=52.49 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=25.8
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+..+|..++|.|+.|+||||++..|+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 5568999999999999999999999987
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.64 E-value=0.04 Score=54.01 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=24.3
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
+-+|..++|.||+|+|||||+..|+....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45789999999999999999999987544
No 121
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.63 E-value=0.036 Score=52.53 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=25.2
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.+.+|..++|.|++|+||||++..|++.-
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45668889999999999999999999853
No 122
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.57 E-value=0.04 Score=50.61 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=23.2
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+|..++|.|++|+||||++..|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35788999999999999999999874
No 123
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.52 E-value=0.029 Score=57.30 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=34.4
Q ss_pred ccceeeeccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 226 LTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 226 ~TG~rviD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.||. =+|-+|.+-+|...++.|++|+|||||+..|+.....+
T Consensus 155 ktg~-gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 155 KTGM-GIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp TTCT-THHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred CCCc-CHHHHHHHhcCCeEEEECCCCCcHHHHHHHhccccccc
Confidence 3443 35778889999999999999999999999998765444
No 124
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.51 E-value=0.041 Score=56.85 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=25.3
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+.+|..+||.|++|+|||||+..|+..
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 4789999999999999999999988764
No 125
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=92.46 E-value=0.42 Score=48.34 Aligned_cols=65 Identities=9% Similarity=-0.099 Sum_probs=52.2
Q ss_pred cccceeeeccccc--cccCceeeccCCCCCCcchhhHHhhhc-C-CCCEEEEEeecCcchHHHHHHHhc
Q psy13480 225 LLTGQRVLDSLFP--CVLGGTTAIPGAFGCGKTVISQALSKY-S-NSDVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 225 l~TG~rviD~l~P--i~kGq~~~I~g~~G~GKt~l~~~la~~-~-~adviV~~~iGERg~Ev~e~~~~f 289 (615)
+-||+.-+|.++. +-+|-..+|.|++|+|||++..+.+.. + +-+-|+|+..-|...++..-.+.|
T Consensus 3 i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRF 71 (260)
T ss_dssp BCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHT
T ss_pred CccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHc
Confidence 4689999998874 558999999999999999998877543 2 345799999999888877776665
No 126
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.43 E-value=0.035 Score=56.91 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=31.5
Q ss_pred eccccccccCceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 232 LDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 232 iD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
+|.++.+-+|...++.|++|+|||||+..|+ ....
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 6888999999999999999999999999998 6444
No 127
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.39 E-value=0.039 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.8
Q ss_pred CceeeccCCCCCCcchhhHHhhhc
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|++++|.|++|+|||||+..|+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhh
Confidence 788999999999999999998764
No 128
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.34 E-value=0.046 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.7
Q ss_pred CceeeccCCCCCCcchhhHHhhhc
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|..++|.|++|+|||||+..|++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 667899999999999999999874
No 129
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.31 E-value=0.025 Score=57.89 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=24.8
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+..+|..+||.|++|+|||||+..|+..
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999998864
No 130
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.30 E-value=0.053 Score=53.94 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=30.8
Q ss_pred eeccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 231 VLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 231 viD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.=|.=|.+.+ +.++|.|++|+|||||+..|+.....+
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3345568889 999999999999999999999865554
No 131
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.25 E-value=0.019 Score=59.55 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=30.0
Q ss_pred eccccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 232 LDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 232 iD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+|.|+++-+|++++|.|++|+|||||+..|+...
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 6788999999999999999999999999998653
No 132
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.24 E-value=0.049 Score=51.78 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=25.2
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+++|..+.|.|++|+||||+...|++..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5788899999999999999999998754
No 133
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.16 E-value=0.12 Score=64.51 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=47.6
Q ss_pred CCccccceeeeccccc---cccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecCcchHH
Q psy13480 222 NYPLLTGQRVLDSLFP---CVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGERGNEM 282 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P---i~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGERg~Ev 282 (615)
.+.+-||+.-+|.++. +-+|..+.|.|++|+|||+|+.+++... .-..|+|+-.-+.....
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~ 426 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI 426 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH
Confidence 4568999999999997 7899999999999999999999887542 22347777655544443
No 134
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.15 E-value=0.049 Score=59.91 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=32.9
Q ss_pred ccccceeeeccc-c-ccccCceeeccCCCCCCcchhhHHh
Q psy13480 224 PLLTGQRVLDSL-F-PCVLGGTTAIPGAFGCGKTVISQAL 261 (615)
Q Consensus 224 pl~TG~rviD~l-~-Pi~kGq~~~I~g~~G~GKt~l~~~l 261 (615)
-+.||+.++|-+ + .+.+|+..+|.|++|||||||+.++
T Consensus 20 ~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 20 KMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred cccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 456788888764 5 7889999999999999999999984
No 135
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.12 E-value=0.066 Score=57.70 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=25.4
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEE
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYV 273 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~ 273 (615)
+++.||+|||||.|+..+|+.+++.++.+-
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 678999999999999999998888754443
No 136
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.08 E-value=0.064 Score=55.28 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=32.9
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEE-EeecCcchHHHHHHH
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVY-VGCGERGNEMAEVLR 287 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~-~~iGERg~Ev~e~~~ 287 (615)
..+++.||+|+|||||++.|++..++.+... .-+-+++.++..++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 6789999999999999999998766654322 224455666655543
No 137
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.05 E-value=0.035 Score=59.89 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=44.4
Q ss_pred Cccccceeeecccc-ccccCceeeccCCCCCCcchhhHHhhhcCC--CC-EEEEEeecCcchHH
Q psy13480 223 YPLLTGQRVLDSLF-PCVLGGTTAIPGAFGCGKTVISQALSKYSN--SD-VIVYVGCGERGNEM 282 (615)
Q Consensus 223 ~pl~TG~rviD~l~-Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~--ad-viV~~~iGERg~Ev 282 (615)
.-+-||...+|-++ -+.+|+.+.|.|++|+|||+++.+++.+.. .+ -|+|...-+...++
T Consensus 184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l 247 (454)
T 2r6a_A 184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQL 247 (454)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHH
T ss_pred CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 45789999999887 478999999999999999999999876421 23 35555544433333
No 138
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.04 E-value=0.17 Score=45.50 Aligned_cols=92 Identities=10% Similarity=0.105 Sum_probs=52.3
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC---CCCEEEEEeecCcch--HHHHHHHhcccccccccCccccCcceEEEEEeCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS---NSDVIVYVGCGERGN--EMAEVLRDFPELTIEVDGVTESIMKRTTLVANTS 314 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~---~adviV~~~iGERg~--Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTs 314 (615)
.+.-+.|.|++|||||++++.|++.+ +..++ +-|..-.. +....++.- -..++++-+-.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~a--------------~~g~l~ldei~ 86 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV--YRELTPDNAPQLNDFIALA--------------QGGTLVLSHPE 86 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE--EEECCTTTSSCHHHHHHHH--------------TTSCEEEECGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE--EECCCCCcchhhhcHHHHc--------------CCcEEEEcChH
Confidence 34568899999999999999998864 33334 55554322 222222211 12356676777
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHH
Q psy13480 315 NMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAE 354 (615)
Q Consensus 315 n~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~Ae 354 (615)
.+|...+.. +.+.+.....++-+|+-+.....+
T Consensus 87 ~l~~~~q~~-------Ll~~l~~~~~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 87 HLTREQQYH-------LVQLQSQEHRPFRLIGIGDTSLVE 119 (145)
T ss_dssp GSCHHHHHH-------HHHHHHSSSCSSCEEEEESSCHHH
T ss_pred HCCHHHHHH-------HHHHHhhcCCCEEEEEECCcCHHH
Confidence 777655432 233334445556666555443433
No 139
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.88 E-value=0.14 Score=55.10 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=27.3
Q ss_pred CceeeccCCCCCCcchhhHHhhhcC-----CCCEEEEEeecC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYS-----NSDVIVYVGCGE 277 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~-----~adviV~~~iGE 277 (615)
+.-+.|.|++|+|||+|++.+++.. +.. ++|+-|.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~-v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLR-VMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSC-EEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCe-EEEeeHHH
Confidence 5678899999999999999998753 332 56665543
No 140
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.87 E-value=0.079 Score=52.41 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=25.9
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCCCCE
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSNSDV 269 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~adv 269 (615)
..+..+.|.|++|||||++++.+++..+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~ 79 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATF 79 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 3455689999999999999999998876653
No 141
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.87 E-value=0.058 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.8
Q ss_pred CceeeccCCCCCCcchhhHHhhhc
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+..++|.|++||||||++..|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999874
No 142
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.84 E-value=0.043 Score=57.29 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=27.6
Q ss_pred cccc--CceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 237 PCVL--GGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 237 Pi~k--Gq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.+.+ |++.+|.|++|+|||||+..|+..-+.+
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4566 9999999999999999999999875554
No 143
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.81 E-value=0.074 Score=53.95 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=27.9
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEe
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVG 274 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~ 274 (615)
..+..+++.|++|||||+|+..+++..+.. .+++-
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-~i~v~ 81 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQAN-FISIK 81 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCE-EEEEC
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCC-EEEEE
Confidence 446678999999999999999999987664 34443
No 144
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.79 E-value=0.055 Score=55.65 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=31.2
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeec
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCG 276 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iG 276 (615)
|.+.+|+.+++.|+.|+||||++..|+.+- +..-|.+.++-
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d 137 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 137 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 457899999999999999999999998752 23335555443
No 145
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.72 E-value=0.084 Score=54.37 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=28.8
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeec
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCG 276 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iG 276 (615)
++|+.++|.|++|||||||+..|+.+- +..-|.+.++.
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D 139 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 139 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 479999999999999999999998642 22335555543
No 146
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.69 E-value=0.098 Score=66.30 Aligned_cols=109 Identities=14% Similarity=0.194 Sum_probs=67.9
Q ss_pred CCccccceeeeccccc---cccCceeeccCCCCCCcchhhHHhhhcC-CC-CEEEEEeecCcchHHHHHHHhcccccccc
Q psy13480 222 NYPLLTGQRVLDSLFP---CVLGGTTAIPGAFGCGKTVISQALSKYS-NS-DVIVYVGCGERGNEMAEVLRDFPELTIEV 296 (615)
Q Consensus 222 ~~pl~TG~rviD~l~P---i~kGq~~~I~g~~G~GKt~l~~~la~~~-~a-dviV~~~iGERg~Ev~e~~~~f~~l~~~~ 296 (615)
.+-+-||..-+|-++. +-+|.-+.|.|++|+|||+|+.+++... .. ..|+|+-.=+..+... .+.+. .
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~--a~~lG---v-- 433 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKLG---V-- 433 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH--HHHTT---C--
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHH--HHHcC---C--
Confidence 3468999999999997 8899999999999999999999987643 22 2466655444333331 33321 0
Q ss_pred cCccccCcceEEEEEeCCCCCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHH
Q psy13480 297 DGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWA 353 (615)
Q Consensus 297 ~g~~~~~m~rtvlvanTsn~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~A 353 (615)
. .++ ++|....+ . ...+.+++.+...+.--++++||++-..
T Consensus 434 -----d-~~~-L~I~~~~~--~-------e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 434 -----D-IDN-LLCSQPDT--G-------EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp -----C-TTT-CEEECCSS--H-------HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred -----C-HHH-eEEeCCCC--H-------HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 1 122 23443321 1 2234556655543434478999998543
No 147
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.66 E-value=0.091 Score=52.40 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=27.7
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
+..++|.|++|||||++++.+++..+.. ++++-|.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~-~~~i~~~ 88 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSAT-FLNISAA 88 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCE-EEEEEST
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCC-eEEeeHH
Confidence 5678999999999999999999977654 4445543
No 148
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.59 E-value=0.062 Score=53.26 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=23.6
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+|..++|.|++||||||++..|++.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999953
No 149
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.58 E-value=0.051 Score=50.16 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.8
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+|..+++.|++||||||+...|++.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36778999999999999999999874
No 150
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.56 E-value=0.048 Score=57.28 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=29.4
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
=+.+.+|+.++|.|++|+|||||+..|+..-+.+
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4567899999999999999999999999865544
No 151
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.50 E-value=0.087 Score=57.24 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=25.0
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEE
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVY 272 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~ 272 (615)
+++.||+|||||.|...+|+.+++.++.+
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 57899999999999999999888875443
No 152
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.48 E-value=0.09 Score=59.36 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=28.9
Q ss_pred eeccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 231 VLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 231 viD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++.+..+.+|+.++|.|++|+|||||+..|+..
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 4555556789999999999999999999998764
No 153
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.44 E-value=0.22 Score=54.65 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=29.4
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC------CCCEEEEEeecCc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS------NSDVIVYVGCGER 278 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~------~adviV~~~iGER 278 (615)
.+..++|.|+.|+|||+|+.++++.. -.|.++++-++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 45678999999999999999887532 1245777777664
No 154
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.40 E-value=0.078 Score=59.24 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=31.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+-+|+.++|.|++|+|||||+..|+..-+.+
T Consensus 362 ~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 397 (595)
T 2yl4_A 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA 397 (595)
T ss_dssp EEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 445789999999999999999999999999876555
No 155
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.39 E-value=0.062 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.4
Q ss_pred eeeccCCCCCCcchhhHHhhhcC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+++|.|++|+|||||+..|+..-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 156
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.37 E-value=0.06 Score=56.09 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=29.2
Q ss_pred eeec-cccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 230 RVLD-SLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 230 rviD-~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++ .-+.+.+|..++|.|++|+|||||+..|+.+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4444 3467899999999999999999999999854
No 157
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.35 E-value=0.052 Score=59.25 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=28.1
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.=|.+.+|++++|.|++|+|||||+..|+.+.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34567799999999999999999999998764
No 158
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.35 E-value=0.082 Score=59.21 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=30.8
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.=|.+.+|++++|.|++|+|||||+..|+..-+.+
T Consensus 374 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 408 (598)
T 3qf4_B 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408 (598)
T ss_dssp EEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence 34688999999999999999999999999876555
No 159
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.33 E-value=0.069 Score=49.32 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=23.9
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.++..+.|.|++|+||||++..|++.-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3567889999999999999999997643
No 160
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.26 E-value=0.08 Score=51.85 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=24.8
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEee
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGC 275 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~i 275 (615)
++|.|++|||||++++.+++..+..+ +++-|
T Consensus 48 vll~G~~GtGKT~la~~la~~~~~~~-~~i~~ 78 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAKVPF-FTISG 78 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCE-EEECS
T ss_pred EEEECcCCCCHHHHHHHHHHHcCCCE-EEEeH
Confidence 88999999999999999998766553 44433
No 161
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.22 E-value=0.099 Score=56.64 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=25.1
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEE
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVY 272 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~ 272 (615)
+++.||+|||||.|...+|+..++.++.+
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 67899999999999999999888875443
No 162
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.21 E-value=0.065 Score=59.74 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=31.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|++++|.|++|+|||||++.|+..-+.+
T Consensus 359 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 394 (578)
T 4a82_A 359 DINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT 394 (578)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence 334789999999999999999999999999876554
No 163
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.16 E-value=0.11 Score=47.47 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=23.5
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|..+.|.|++|+||||+.+.|++.-+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~ 30 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4568899999999999999999865443
No 164
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.15 E-value=0.28 Score=51.02 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=30.3
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecC
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGE 277 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGE 277 (615)
.-.+|..++|.|++|+||||++..|+.+- +..-+.+.++--
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT 167 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecc
Confidence 34689999999999999999999998752 222355555543
No 165
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.13 E-value=0.072 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.1
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++..++|.|++|+||||++..|++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999953
No 166
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.12 E-value=0.079 Score=59.05 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=30.5
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-+.+
T Consensus 361 ~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 396 (582)
T 3b5x_A 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD 396 (582)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344688999999999999999999999999865443
No 167
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.10 E-value=0.092 Score=53.33 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=28.5
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC---CCCEEEEEeecC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS---NSDVIVYVGCGE 277 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~---~adviV~~~iGE 277 (615)
.+..+.|.|++|||||+|++.+++.. +.. ++|+-|.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~-~~~i~~~~ 75 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYR-VIYSSADD 75 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCC-EEEEEHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCE-EEEEEHHH
Confidence 45678899999999999999998754 333 66776653
No 168
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.04 E-value=0.055 Score=56.25 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=28.7
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
+.+.+|+.++|.|++|+|||||+..|+..-+.+
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~ 198 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 198 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 567899999999999999999999999875444
No 169
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.03 E-value=0.35 Score=49.81 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=31.1
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecCcc
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGERG 279 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGERg 279 (615)
...+|..++|.|++|+||||++..||.+- +..-+.++.+.-+.
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 35678899999999999999999988642 22235555655443
No 170
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.02 E-value=0.07 Score=50.72 Aligned_cols=28 Identities=25% Similarity=0.191 Sum_probs=24.5
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+..+|..++|.|++|+||||++..|+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999998864
No 171
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.01 E-value=0.08 Score=48.32 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.7
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
|.++|.|++||||||+...|++.-+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 77899999999999999999985443
No 172
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.99 E-value=0.085 Score=53.51 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=25.4
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
+++.||+|||||+|++.+|+..+.. ++++-|+
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~~-~i~v~~~ 70 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGIN-PIMMSAG 70 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCC-CEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC-EEEEeHH
Confidence 5678999999999999999987766 4455544
No 173
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.89 E-value=0.076 Score=59.17 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=31.3
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+.++|.|++|+|||||+..|+..-+.+
T Consensus 361 ~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 396 (582)
T 3b60_A 361 NINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID 396 (582)
T ss_dssp EEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC
Confidence 345688999999999999999999999999876554
No 174
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.83 E-value=0.12 Score=57.47 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=28.3
Q ss_pred eeccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 231 VLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 231 viD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++.+-.+.+|+.++|.|++|+|||||+..|+..
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444436799999999999999999999998763
No 175
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.80 E-value=0.094 Score=56.93 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=24.9
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEE
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVY 272 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~ 272 (615)
+++.||+|||||.|+..+|+.+++.++.+
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred eEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 67899999999999999999888875444
No 176
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.71 E-value=0.084 Score=49.64 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.5
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..+|-.++|.|++||||||+...|++.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346778999999999999999999874
No 177
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.70 E-value=0.13 Score=56.60 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=42.5
Q ss_pred Cccccceeeecccc--ccccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecCcchHHH
Q psy13480 223 YPLLTGQRVLDSLF--PCVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGERGNEMA 283 (615)
Q Consensus 223 ~pl~TG~rviD~l~--Pi~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGERg~Ev~ 283 (615)
+-+-||+.-+|.++ -+.+|..++|.|++|+|||||+.+++... +-.-++|+.-.+....+.
T Consensus 261 ~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~ 325 (525)
T 1tf7_A 261 VRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLL 325 (525)
T ss_dssp CEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHH
T ss_pred ceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHH
Confidence 34667876677553 78999999999999999999999987531 222355655455443333
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.69 E-value=0.087 Score=49.83 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=28.5
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCCC--CEEEEEeec
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSNS--DVIVYVGCG 276 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~a--dviV~~~iG 276 (615)
..+..+.|.|++|||||++++.+++.... .-++|+-|.
T Consensus 50 ~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 36789999999999999999999874321 235666554
No 179
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.69 E-value=0.094 Score=47.25 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.5
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..+..+.|.|++|+|||++++.+++.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44567899999999999999999875
No 180
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.61 E-value=0.063 Score=57.75 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=42.9
Q ss_pred Cccccceeeeccccc-cccCceeeccCCCCCCcchhhHHhhhcC--CCC-EEEEEeecCcchHH
Q psy13480 223 YPLLTGQRVLDSLFP-CVLGGTTAIPGAFGCGKTVISQALSKYS--NSD-VIVYVGCGERGNEM 282 (615)
Q Consensus 223 ~pl~TG~rviD~l~P-i~kGq~~~I~g~~G~GKt~l~~~la~~~--~ad-viV~~~iGERg~Ev 282 (615)
..+-||...+|.++- +.+|..+.|.|++|+|||+++.+++.+. ..+ -++|+..-+...++
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l 244 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQL 244 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHH
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHH
Confidence 457899999998873 7799999999999999999999987642 123 25555444433333
No 181
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.56 E-value=0.091 Score=48.30 Aligned_cols=25 Identities=24% Similarity=0.237 Sum_probs=21.7
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+|..+.|.|++||||||++..|++.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999984
No 182
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.54 E-value=0.13 Score=56.42 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.8
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEE
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVY 272 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~ 272 (615)
+++.||+|||||.|...+|+.+++.++.+
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred eEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 67899999999999999999888764433
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.53 E-value=0.26 Score=51.34 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=23.9
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCE
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDV 269 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adv 269 (615)
..+++.|++|||||+|++.+++..+..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~ 112 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTF 112 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 3478999999999999999999876653
No 184
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.48 E-value=0.35 Score=52.45 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=31.6
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc---CCCCEEEEEeecCcchHHHHHHHh
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY---SNSDVIVYVGCGERGNEMAEVLRD 288 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~---~~adviV~~~iGERg~Ev~e~~~~ 288 (615)
++..+++.|++|+||||++..||.+ .... +.++.|.-......+-+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~k-Vllv~~D~~r~~a~eqL~~ 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYK-VGLVAADVYRPAAYDQLLQ 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCC-EEEEEECCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe-EEEEecCccchhHHHHHHH
Confidence 5778899999999999999988854 2222 4455555443334444433
No 185
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.46 E-value=0.071 Score=58.10 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=45.4
Q ss_pred Ccccc-ceeeeccccc-cccCceeeccCCCCCCcchhhHHhhhcCC-C-C-EEEEEeecCcchHHH
Q psy13480 223 YPLLT-GQRVLDSLFP-CVLGGTTAIPGAFGCGKTVISQALSKYSN-S-D-VIVYVGCGERGNEMA 283 (615)
Q Consensus 223 ~pl~T-G~rviD~l~P-i~kGq~~~I~g~~G~GKt~l~~~la~~~~-a-d-viV~~~iGERg~Ev~ 283 (615)
..+.| |+..+|.++- +-+|.-+.|.|++|+|||+++.++|.+.. . + -++|+..-+...++.
T Consensus 222 ~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~ 287 (503)
T 1q57_A 222 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETA 287 (503)
T ss_dssp TCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHH
T ss_pred CCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHH
Confidence 35678 9999998864 67899999999999999999999886432 2 3 356665555444443
No 186
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.42 E-value=0.089 Score=58.81 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=30.9
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.=|.+.+|++++|.|++|+|||||+..|+..-+.+
T Consensus 362 isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~ 396 (587)
T 3qf4_A 362 VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE 396 (587)
T ss_dssp EEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 34789999999999999999999999999876555
No 187
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.33 E-value=0.092 Score=55.55 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=31.6
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeec
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCG 276 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iG 276 (615)
|.+.+|+.++|.|+.|+||||++..|+.+- +..-|.+.++-
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D 194 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 194 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccc
Confidence 457899999999999999999999998752 23335555554
No 188
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.32 E-value=0.091 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++|.|++||||||++..|++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999875
No 189
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.29 E-value=0.13 Score=49.96 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=26.3
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
..+.|.|++|||||++++.+++..+.. ++++-|.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~~~-~~~~~~~ 73 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQVP-FLAMAGA 73 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCC-EEEEETT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC-EEEechH
Confidence 347899999999999999999876654 4444444
No 190
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.18 E-value=0.11 Score=47.99 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.8
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
+..+.+.|++||||||+...|++.-+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456889999999999999999986443
No 191
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.18 E-value=0.13 Score=47.22 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=20.1
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
++-.+.|.|++||||||+...|++.-+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 56678999999999999999999765554
No 192
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.15 E-value=0.12 Score=48.40 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.4
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
-.++|.|++||||||++..|++.-+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999997643
No 193
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.10 E-value=0.1 Score=48.48 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=24.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.-+...+|..+.+.|.+|+||||++..|+++
T Consensus 5 ~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 5 TTYKCIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp ---CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 33334457888999999999999999999875
No 194
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.10 E-value=0.098 Score=48.30 Aligned_cols=25 Identities=44% Similarity=0.615 Sum_probs=22.9
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+|..++|.|++||||||++..|++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999875
No 195
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.05 E-value=0.098 Score=49.20 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.0
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..+|-.++|.|++||||||+...|++.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 446778999999999999999999873
No 196
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.03 E-value=0.15 Score=55.47 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=25.5
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEE
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYV 273 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~ 273 (615)
+++.||+|||||.|+..+|+.+++.++.+-
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 678999999999999999998888754443
No 197
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.00 E-value=0.1 Score=57.71 Aligned_cols=30 Identities=20% Similarity=0.098 Sum_probs=27.0
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-|.+.+|..++|.|++|+|||||+..|+.+
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 356889999999999999999999999865
No 198
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.97 E-value=0.13 Score=48.94 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred eeeccCCCCCCcchhhHHhhhcCC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
+++|.|++||||||++..|++.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987543
No 199
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.95 E-value=0.096 Score=55.31 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=25.2
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+.+|+.++|.|++|+|||||+..|+.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999999999999875
No 200
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.91 E-value=0.13 Score=48.11 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.4
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+|-.+.|.|++||||||++..|++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4667899999999999999999975
No 201
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.82 E-value=0.11 Score=57.60 Aligned_cols=30 Identities=27% Similarity=0.212 Sum_probs=26.7
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999999998753
No 202
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.78 E-value=0.15 Score=57.39 Aligned_cols=34 Identities=32% Similarity=0.252 Sum_probs=28.8
Q ss_pred eeccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 231 VLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 231 viD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++.+-.+.+|+.++|.|++|+|||||+..|+..
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 4555546799999999999999999999998753
No 203
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.76 E-value=0.18 Score=51.91 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=26.2
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
..+++.|++|||||+|+..+|+.....-++++-|.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~ 80 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 80 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECC
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhH
Confidence 45789999999999999999987622234454443
No 204
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.72 E-value=0.078 Score=53.15 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=26.9
Q ss_pred ccccccc---CceeeccCCCCCCcchhhHHhhhc
Q psy13480 234 SLFPCVL---GGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 234 ~l~Pi~k---Gq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.-|.+.+ |..++|.|++|+||||+...|++.
T Consensus 38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456666 999999999999999999999974
No 205
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.71 E-value=0.34 Score=49.16 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=32.4
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEE-EEEeecCcchHHHHHHHh
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVI-VYVGCGERGNEMAEVLRD 288 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~advi-V~~~iGERg~Ev~e~~~~ 288 (615)
..+.|.|++|||||++++.+++..+..++ +.+.+-+...++..++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTN 103 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHh
Confidence 35889999999999999999988776643 222233444455555543
No 206
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.64 E-value=0.1 Score=54.74 Aligned_cols=42 Identities=21% Similarity=0.104 Sum_probs=37.2
Q ss_pred Cccccceeeecccc-ccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 223 YPLLTGQRVLDSLF-PCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 223 ~pl~TG~rviD~l~-Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.-+-||..-+|-++ -+-+|+-+.|-|++|+|||+++.++|.+
T Consensus 27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 35689999999887 4889999999999999999999998764
No 207
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.63 E-value=0.098 Score=48.26 Aligned_cols=27 Identities=44% Similarity=0.532 Sum_probs=22.5
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhh
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
+.+..| ..+|.|+.|+|||+|+..|.-
T Consensus 22 ~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 22 IPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 455566 889999999999999988754
No 208
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.60 E-value=0.11 Score=47.89 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=23.2
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
+|..+.|.|++|+||||+...|++.-+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 566788999999999999999998543
No 209
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.53 E-value=0.13 Score=57.15 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.5
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+.+|+.++|.|+.|+|||||+..|+...
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999999998753
No 210
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.52 E-value=0.13 Score=47.93 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=23.4
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+|-.++|.|++||||||+...|++.-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999864
No 211
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.51 E-value=0.12 Score=49.00 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.1
Q ss_pred eeeccCCCCCCcchhhHHhhhcC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+++|.|++||||||++..|++.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 212
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.51 E-value=0.096 Score=56.71 Aligned_cols=61 Identities=18% Similarity=0.083 Sum_probs=45.5
Q ss_pred Cccccceeeeccccc-cccCceeeccCCCCCCcchhhHHhhhcC-CCC-EEEEEeecCcchHHH
Q psy13480 223 YPLLTGQRVLDSLFP-CVLGGTTAIPGAFGCGKTVISQALSKYS-NSD-VIVYVGCGERGNEMA 283 (615)
Q Consensus 223 ~pl~TG~rviD~l~P-i~kGq~~~I~g~~G~GKt~l~~~la~~~-~ad-viV~~~iGERg~Ev~ 283 (615)
.-+-||..-+|.++- +.+|..+.|-|++|+|||+++.++|.+. ..+ -++|+..-+...++.
T Consensus 178 ~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~ 241 (444)
T 3bgw_A 178 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENI 241 (444)
T ss_dssp CSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHH
T ss_pred CCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHH
Confidence 457899999998874 7799999999999999999999987642 123 355555544444444
No 213
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.38 E-value=0.67 Score=49.43 Aligned_cols=123 Identities=15% Similarity=0.076 Sum_probs=61.8
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecC--cchHHHHHHHhcccccccccCccccCcceEEEEEeCCCC
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGE--RGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGE--Rg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn~ 316 (615)
.+...+.+.|++|+||||+.+.|++..+. . ++-..+ ..+.+.+.+.+.- .. .+.++|-+| +.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~--~-~i~~D~~~~~~~~~~~~~~~l-----~~-------g~~vIiD~~-~~ 319 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGY--V-HVNRDTLGSWQRCVSSCQAAL-----RQ-------GKRVVIDNT-NP 319 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTC--E-ECCGGGSCSHHHHHHHHHHHH-----HT-------TCCEEEESC-CC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCc--E-EEccchHHHHHHHHHHHHHHH-----hc-------CCcEEEeCC-CC
Confidence 34567888999999999999999874322 1 111111 1222222222210 01 234555444 45
Q ss_pred CHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCCchhhhHHHHHH
Q psy13480 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYE 385 (615)
Q Consensus 317 p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~~l~s~La~~~E 385 (615)
....|.... +.++..|..+.++.=+.+ +....+-+..|..+.......|..+..++.+-||
T Consensus 320 ~~~~r~~~~-------~~~~~~~~~~~~v~l~~~-~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e 380 (416)
T 3zvl_A 320 DVPSRARYI-------QCAKDAGVPCRCFNFCAT-IEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFE 380 (416)
T ss_dssp SHHHHHHHH-------HHHHHHTCCEEEEEECCC-HHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCC
T ss_pred CHHHHHHHH-------HHHHHcCCeEEEEEEeCC-HHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcC
Confidence 555554322 233456777765443443 4455544555554433333445455555444443
No 214
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.36 E-value=0.17 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.5
Q ss_pred eeeccCCCCCCcchhhHHhhh
Q psy13480 243 TTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~ 263 (615)
.++|.|++||||||++..|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 215
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.35 E-value=0.11 Score=48.19 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=23.5
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.+|-.++|.|++||||||+...|++.-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999754
No 216
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.34 E-value=0.11 Score=46.97 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.1
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..+..+.|.|++|||||++++.+++.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999875
No 217
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.25 E-value=0.13 Score=48.31 Aligned_cols=21 Identities=29% Similarity=0.770 Sum_probs=19.9
Q ss_pred eeeccCCCCCCcchhhHHhhh
Q psy13480 243 TTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~ 263 (615)
+++|.|++||||||++..|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 218
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.21 E-value=0.17 Score=55.70 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=24.9
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.+.+| ++|.|++|||||+|++.|++..+..
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~~~~ 91 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEARVP 91 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHTTCC
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34456 8999999999999999999876654
No 219
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.08 E-value=0.11 Score=55.26 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=27.2
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+.+.+|..++|.|++|+|||||+..|+...
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 578899999999999999999999999753
No 220
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.07 E-value=0.23 Score=45.88 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.8
Q ss_pred eeccCCCCCCcchhhHHhhhcC
Q psy13480 244 TAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~ 265 (615)
++|.|++||||||++..|++.-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999999998753
No 221
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.06 E-value=0.12 Score=47.51 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=22.0
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
+-.++|.|++||||||+...|++.-+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999987533
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.02 E-value=0.16 Score=50.31 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=28.1
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
.+..+.+.|++|||||++++.+++..+.. ++++-|.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~-~~~i~~~ 84 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAP-FIKVEAT 84 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCC-EEEEEGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC-EEEEcch
Confidence 34568899999999999999999877655 4455554
No 223
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.97 E-value=0.22 Score=48.71 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=25.8
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.+.+|..+.|.|++|+||||++..|+++-.
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 356888999999999999999999987643
No 224
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.90 E-value=0.16 Score=50.15 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=25.6
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCCCEE
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNSDVI 270 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~advi 270 (615)
....+.|.|++|||||++++.+++..+..++
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~ 93 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFI 93 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 4457889999999999999999987666543
No 225
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.79 E-value=0.15 Score=47.13 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.5
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
..++|.|++||||||+...|++.-+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999998533
No 226
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.74 E-value=0.1 Score=55.17 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=28.8
Q ss_pred eccccccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 232 LDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 232 iD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
++.+....+|++++|.|++|+|||||+..|+....
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 44455566899999999999999999999986543
No 227
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.71 E-value=0.16 Score=57.37 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=26.0
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
+.+|+.++|.|+.|+|||||+..|+....
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57999999999999999999999987543
No 228
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.68 E-value=0.14 Score=53.95 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=24.6
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-..+|+.++|.|+.|+|||||+..|+..
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3567889999999999999999998764
No 229
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.67 E-value=0.2 Score=52.50 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=28.6
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
+..++|.|++|||||++++.+|+..+.. ++++-|.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~-~~~v~~~ 182 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNAT-FFNISAA 182 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCE-EEEECSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCc-EEEeeHH
Confidence 5678999999999999999999887765 4555554
No 230
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.62 E-value=0.15 Score=52.19 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=26.2
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEEEee
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGC 275 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~~~i 275 (615)
..+.+.|++|||||+|++.+++..+.. ++++-|
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~-~~~v~~ 84 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANST-FFSVSS 84 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCE-EEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCC-EEEEch
Confidence 347899999999999999999887665 444444
No 231
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.61 E-value=0.16 Score=45.47 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=17.5
Q ss_pred eeeccCCCCCCcchhhHHh
Q psy13480 243 TTAIPGAFGCGKTVISQAL 261 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~l 261 (615)
.++|.|++||||||++..|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999999999
No 232
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.53 E-value=1.2 Score=45.20 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.2
Q ss_pred eeeccCCCCCCcchhhHHhhhcC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.+.|.|++|+|||+++..+++..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 233
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=88.49 E-value=0.13 Score=50.52 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.9
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
+.|.|++|||||+++..+++..+..
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC
Confidence 7899999999999999999865554
No 234
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.42 E-value=0.17 Score=61.89 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=30.6
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.=|.|-+|+++||.|++|+|||||+..|.+.-+.+
T Consensus 1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp EEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC
Confidence 34789999999999999999999999999875543
No 235
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.32 E-value=0.2 Score=50.81 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=24.5
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
+-.+|-.+.|.|++|+||||+...|++...
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445566788999999999999999987543
No 236
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=88.31 E-value=0.18 Score=47.50 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.4
Q ss_pred eeeccCCCCCCcchhhHHhhhcC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.++|.|++|+||||++..|++.-
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998753
No 237
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.28 E-value=0.16 Score=56.13 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=28.1
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
+-+.+|+.++|.|+.|+|||||+..|+..-..+
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 445789999999999999999999998875554
No 238
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.22 E-value=0.16 Score=46.18 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=19.3
Q ss_pred eeeccCCCCCCcchhhHHhhh
Q psy13480 243 TTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~ 263 (615)
.+.|.|++|+||||+...|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 467899999999999999998
No 239
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.22 E-value=0.19 Score=55.77 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=24.0
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..+|+..||.|++|+|||||+..|+..
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 448999999999999999999998764
No 240
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.19 E-value=0.2 Score=46.53 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=21.0
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..++|.|++||||||+...|++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35889999999999999999986
No 241
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.17 E-value=0.17 Score=54.78 Aligned_cols=32 Identities=19% Similarity=0.070 Sum_probs=27.1
Q ss_pred ccccccccCce--eeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGT--TAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~--~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+|.. ++|.|++|+|||||+..|+..
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34478899999 999999999999999998764
No 242
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.15 E-value=0.17 Score=48.76 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=22.8
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.++-.+.|.|++||||||+++.|++.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3556789999999999999999997543
No 243
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.15 E-value=0.13 Score=47.67 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=23.7
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.++-.++|.|++||||||++..|++.-+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999998543
No 244
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.13 E-value=0.12 Score=46.58 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=27.7
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGE 277 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGE 277 (615)
+.-+.|.|++|||||++++.+++... -++++-|.+
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~~~~ 61 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT--PWVSPARVE 61 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS--CEECCSSTT
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC--CeEEechhh
Confidence 44588999999999999999998765 456666654
No 245
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.10 E-value=0.16 Score=47.05 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=21.6
Q ss_pred eeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
.++|.|++||||||+...|++.-+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 4789999999999999999986443
No 246
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.02 E-value=0.19 Score=47.20 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.3
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
-.++|.|++||||||+...|++.-+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999997543
No 247
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.96 E-value=0.38 Score=47.17 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=31.8
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCC-C-EEEEEeecCcchH
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNS-D-VIVYVGCGERGNE 281 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~a-d-viV~~~iGERg~E 281 (615)
+.-+.|.|++|||||++++.+++.... + -++++-|+.-..+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 456889999999999999999986542 2 3778888875544
No 248
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.82 E-value=0.18 Score=55.85 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=26.7
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCCCE
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNSDV 269 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~adv 269 (615)
+|..+++.||+|||||+|++.|++..+...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 799999999999999999999998766553
No 249
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.79 E-value=0.18 Score=48.21 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=23.1
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
+|-.+.|.|++||||||+...|++.-+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456789999999999999999998644
No 250
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.76 E-value=0.18 Score=48.11 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.2
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+.+|..+.|.|++|+||||++..|++.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999875
No 251
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.75 E-value=0.25 Score=51.10 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=27.5
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
+..+++.|++|||||+++..||+..+.. ++.+-|+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~-~~~~~~~ 85 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVP-FTMADAT 85 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC-EEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCC-EEEechH
Confidence 4467899999999999999999987665 3444444
No 252
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.74 E-value=0.32 Score=56.54 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=30.2
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEe
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVG 274 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~ 274 (615)
.+..|..++|.|++|||||+|++.|++..+... +++-
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~-i~v~ 270 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFF-FLIN 270 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE-EEEE
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE-EEEE
Confidence 356788899999999999999999998776653 4443
No 253
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.73 E-value=0.9 Score=46.44 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=33.1
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecCcchHHHHHHH
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGERGNEMAEVLR 287 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGERg~Ev~e~~~ 287 (615)
+|..+++.|+.|+||||++..||.+. ...-+.++.+--+.....+.+.
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~ 146 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQ 146 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHH
Confidence 48899999999999999999887542 1123555666655555555443
No 254
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=87.59 E-value=0.26 Score=49.81 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=28.9
Q ss_pred eccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhc
Q psy13480 245 AIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 245 ~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f 289 (615)
.+-|++|+|||++++.+++..+.+++-+-+...+...+.+.+.++
T Consensus 52 L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~ 96 (324)
T 3u61_B 52 LHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNF 96 (324)
T ss_dssp EECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHH
T ss_pred EeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHH
Confidence 445559999999999999987766443333333334444444443
No 255
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.58 E-value=0.2 Score=45.31 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.9
Q ss_pred eeeccCCCCCCcchhhHHhhhcCC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
+++|.|++||||||+...|++.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998533
No 256
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.47 E-value=0.18 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.4
Q ss_pred eeeccCCCCCCcchhhHHhhhcC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.+.|.|++||||||+...||+.-
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999753
No 257
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=87.47 E-value=0.26 Score=49.41 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=27.6
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
|+.+.|.|++|+|||+|+.++++..+ ++|+-|.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~---~~~~~~~ 63 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERP---GILIDCR 63 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSS---EEEEEHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcC---cEEEEee
Confidence 57899999999999999999987653 6677664
No 258
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=87.45 E-value=0.94 Score=48.93 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=32.5
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecCcchHHHHHH
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGERGNEMAEVL 286 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGERg~Ev~e~~ 286 (615)
+|..+++.|+.|+||||++..||.+- ...-+.++.|.-+..-..+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL 145 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQL 145 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHH
Confidence 78889999999999999999988652 122355556655554443433
No 259
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.43 E-value=0.2 Score=46.91 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=25.6
Q ss_pred ceeeccCCCCCCcchhhHHhhhcC-CCC-EEEEEeec
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYS-NSD-VIVYVGCG 276 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~-~ad-viV~~~iG 276 (615)
..+.|.|++|||||+|++.+++.. ..+ -++|+-|.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 678899999999999999988753 112 25555543
No 260
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.38 E-value=0.19 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.3
Q ss_pred eeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
.++|.|++|||||||...||+..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 3679999999999999999986544
No 261
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.35 E-value=0.21 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.3
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..+.|.|++|+|||+++..+++.
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999998874
No 262
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.33 E-value=0.19 Score=51.27 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=22.9
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-.++..++|.|++|||||||+..|++.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356778999999999999999888764
No 263
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=87.11 E-value=0.16 Score=57.59 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=25.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhh
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALS 262 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la 262 (615)
|.=|.|.+|+.++|.|++|+|||||+..|.
T Consensus 340 ~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 340 NVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 344789999999999999999999997653
No 264
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.03 E-value=0.18 Score=59.90 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=27.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhh
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
|.=|.+.+|++++|.|++|+|||||+..|+.
T Consensus 453 ~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 453 KTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999999999999984
No 265
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.02 E-value=0.19 Score=46.07 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.5
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+|.+++|.|.+|+|||+|+..++...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998653
No 266
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.97 E-value=0.26 Score=49.39 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=25.6
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEEEee
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGC 275 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~~~i 275 (615)
..+.|.|++|||||++++.+++..+.. ++++-|
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~-~~~~~~ 71 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSG 71 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCC-EEEECT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCC-EEEEec
Confidence 568899999999999999999876554 333433
No 267
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=86.87 E-value=0.19 Score=46.08 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+.|.|++||||||++..|++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999874
No 268
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.85 E-value=0.19 Score=45.58 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.9
Q ss_pred eeeccCCCCCCcchhhHHhhhcCC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.++|.|++||||||+...|++.-.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998533
No 269
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.83 E-value=0.31 Score=50.65 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=27.2
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCCCEEEEEee
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGC 275 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~i 275 (615)
...++|.|++|||||+|+..+++..+.. ++++-|
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~-~~~i~~ 150 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGAT-FFSISA 150 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCE-EEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCe-EEEEeh
Confidence 3468899999999999999999987665 444544
No 270
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.66 E-value=0.2 Score=53.94 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=27.3
Q ss_pred eeccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 231 VLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 231 viD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++.++ ..+|+.++|.|+.|+|||||+..|+..
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 455444 378999999999999999999998764
No 271
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.59 E-value=0.33 Score=48.12 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.9
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++-.+.|.|.+|+||||+...|++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4556889999999999999999975
No 272
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.52 E-value=0.26 Score=47.88 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.2
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+|..++|.|++||||||+...|++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668899999999999999999973
No 273
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.51 E-value=0.21 Score=47.90 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.1
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
+|-.+.|.|++||||||+...|++.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999998543
No 274
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=86.39 E-value=0.24 Score=45.55 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.8
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++|.|++||||||+...|++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999874
No 275
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=86.18 E-value=0.3 Score=53.54 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=24.6
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEee
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGC 275 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~i 275 (615)
+++.|++|||||+|++.+++..+.. ++++-|
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~~-f~~is~ 82 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANVP-FFHISG 82 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCC-EEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC-eeeCCH
Confidence 8899999999999999999876654 334433
No 276
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.14 E-value=0.25 Score=60.23 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=30.6
Q ss_pred cccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 234 SLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 234 ~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.=|.+.+|++++|.|++|+|||||++.|++.-+.+
T Consensus 409 isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~ 443 (1284)
T 3g5u_A 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443 (1284)
T ss_dssp EEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 44689999999999999999999999998865554
No 277
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=86.13 E-value=1 Score=53.08 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=28.8
Q ss_pred ceeeccCCCCCCcchhhHHhhhcC------CCCEEEEEeecCc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYS------NSDVIVYVGCGER 278 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~------~adviV~~~iGER 278 (615)
..++|.|..|+|||+|+.++++.. -.|.++++-+++.
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 457899999999999999887641 3456778887764
No 278
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=85.99 E-value=0.25 Score=46.03 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=20.1
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|++|+|||+|+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6789999999999999999865
No 279
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.87 E-value=0.3 Score=59.58 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=31.6
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|+++||.|++|+|||||++.|++.-+.+
T Consensus 1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~ 1086 (1284)
T 3g5u_A 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM 1086 (1284)
T ss_dssp SCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 445789999999999999999999999999876555
No 280
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=85.83 E-value=0.3 Score=48.68 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=28.2
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCC--CCEEEEEeecCc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSN--SDVIVYVGCGER 278 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~--adviV~~~iGER 278 (615)
+.+++.|++|||||+++..+++... ..-++++.|.+-
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 4678999999999999999988532 223677777653
No 281
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.80 E-value=0.28 Score=48.90 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.2
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+..+.|.|++|||||+++..+++.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999988774
No 282
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=85.80 E-value=0.58 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=17.7
Q ss_pred CceeeccCCCCCCcchhhHHhh
Q psy13480 241 GGTTAIPGAFGCGKTVISQALS 262 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la 262 (615)
..-..|.||||||||+++..+.
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 3467899999999999876554
No 283
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.78 E-value=0.24 Score=47.12 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=20.8
Q ss_pred eeeccCCCCCCcchhhHHhhhcCC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
++.|.|++||||||++..|++.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998543
No 284
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=85.71 E-value=0.38 Score=51.77 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=26.5
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
..+++.||+|||||+|++.+|+....--++++-|.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 202 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH
Confidence 45789999999999999999987632235555543
No 285
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.65 E-value=0.25 Score=50.11 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=26.1
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCCCE
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNSDV 269 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~adv 269 (615)
.|+-+.+.|++|||||++++.+++..+..+
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 467899999999999999999998776653
No 286
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.59 E-value=0.18 Score=56.25 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=25.8
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+.+|..++|.|++|||||||+..|++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh
Confidence 4779999999999999999999999875
No 287
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.57 E-value=0.26 Score=49.00 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=26.9
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHH
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEM 282 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev 282 (615)
-.++|.|++||||||++..|++.-+ +.|+-.|.-.+.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg---~~~~d~g~~~r~~ 47 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG---ARYLDTGAMYRIA 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CCcccCCcHHHHH
Confidence 3688999999999999999987533 2344555433333
No 288
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.49 E-value=0.24 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.4
Q ss_pred eeeccCCCCCCcchhhHHhhhcC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+++|.|++|+|||||+..|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 289
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.39 E-value=0.26 Score=47.21 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=20.1
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++|.|+.||||||+...|++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999985
No 290
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.38 E-value=0.29 Score=47.38 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.6
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
..+.|.|++||||||+...|++.-+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999997643
No 291
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.37 E-value=0.36 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.7
Q ss_pred CceeeccCCCCCCcchhhHHhhh
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~ 263 (615)
+-.++|.|++||||||++..|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999998
No 292
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.37 E-value=0.45 Score=52.05 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=28.3
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGE 277 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGE 277 (615)
...+.|.|++|||||++++.+++..+.. ++++-|..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~-~i~in~s~ 112 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYD-ILEQNASD 112 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCE-EEEECTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCC-EEEEeCCC
Confidence 4578899999999999999999987665 44554443
No 293
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.34 E-value=0.27 Score=45.00 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.0
Q ss_pred ceeeccCCCCCCcchhhHHhhhcC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
-.++|.|++||||||+...|++.-
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998753
No 294
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=85.34 E-value=0.25 Score=45.98 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.4
Q ss_pred eeeccCCCCCCcchhhHHhhhcC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+++|.|++|+|||+|+..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 67899999999999999998753
No 295
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.30 E-value=1.2 Score=45.41 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=32.0
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecCcchHHHH
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGERGNEMAE 284 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGERg~Ev~e 284 (615)
+|..+++.|+.|+||||++..||.+- ...-+.++.+.-+..-..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ 143 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 143 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH
Confidence 88999999999999999999887641 1223555666655544433
No 296
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=85.20 E-value=0.29 Score=45.68 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=20.2
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++|.|++||||||+...|++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999874
No 297
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.19 E-value=0.26 Score=47.16 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=22.7
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
++-.+.|.|++||||||+...|++.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445688999999999999999997643
No 298
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=84.99 E-value=0.29 Score=53.83 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=26.2
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.=|.+.+ +.++|.|++|+|||||+..|+..
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 33457778 99999999999999999998763
No 299
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=84.96 E-value=0.35 Score=48.45 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=27.2
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
+.+.|.|++|+|||+|+.++++..... ++|+-|.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~-~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLP-YIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCC-EEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCC-EEEEEch
Confidence 588999999999999999998765444 4666554
No 300
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.91 E-value=0.32 Score=52.37 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.9
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
+..+.+.||+|||||+++..+|+..+.+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999976633
No 301
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.89 E-value=0.43 Score=49.56 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=26.9
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
...+.+.|++|||||++++.+++..+.. ++.+-|.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~-~~~~~~~ 106 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIP-IAISDAT 106 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC-EEEEEGG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCC-EEEecch
Confidence 3467899999999999999999987654 3444443
No 302
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=84.87 E-value=0.29 Score=48.11 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=21.5
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++=+++|.|++|+||||++..|++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3446889999999999999999874
No 303
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=84.85 E-value=0.3 Score=44.06 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.0
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|++|+|||+|+..++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 304
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=84.70 E-value=0.3 Score=44.91 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=19.9
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|++|+|||+|+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 305
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=84.48 E-value=0.26 Score=55.78 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=23.3
Q ss_pred ccccccccCceeeccCCCCCCcchhh
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVIS 258 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~ 258 (615)
|.=|.+.+|+.++|.|++|+|||||+
T Consensus 36 ~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 36 NIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp SEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ccEEEECCCCEEEEECCCCCCHHHHh
Confidence 34478999999999999999999996
No 306
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=84.43 E-value=0.32 Score=47.75 Aligned_cols=22 Identities=14% Similarity=0.362 Sum_probs=19.8
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++|.|++||||||++..|++.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 307
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.43 E-value=0.33 Score=59.44 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=30.2
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
=|.+-+|++++|.|++|+|||||++.|.+.-+.+
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~ 471 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL 471 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhccccccc
Confidence 4688999999999999999999999999875554
No 308
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=84.20 E-value=0.26 Score=58.55 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=30.7
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
|.=|.+.+|++++|.|++|+|||||+..|+.....+
T Consensus 691 dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~ 726 (986)
T 2iw3_A 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT 726 (986)
T ss_dssp EEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 445789999999999999999999999998765443
No 309
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.04 E-value=0.41 Score=49.00 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.3
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+..+.|.|++|||||+|++.|++.
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3688999999999999999999874
No 310
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.03 E-value=0.44 Score=53.73 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=27.9
Q ss_pred ccccccccC-----ceeeccCCCCCCcchhhHHhhhcCCC
Q psy13480 233 DSLFPCVLG-----GTTAIPGAFGCGKTVISQALSKYSNS 267 (615)
Q Consensus 233 D~l~Pi~kG-----q~~~I~g~~G~GKt~l~~~la~~~~a 267 (615)
|.-|.+.+| +.++|.|++|+|||||+..|+.....
T Consensus 365 ~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp SCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred ceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 344666666 78999999999999999999875433
No 311
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=83.87 E-value=0.27 Score=52.90 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++|.|++|+|||||+..|+..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 9999999999999999999874
No 312
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=83.78 E-value=0.35 Score=56.14 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=27.6
Q ss_pred ccccCceeeccCCCCCCcchhhHHhhhcCCCC
Q psy13480 237 PCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268 (615)
Q Consensus 237 Pi~kGq~~~I~g~~G~GKt~l~~~la~~~~ad 268 (615)
.+..|..+++.|++|||||+|++.+|+..+..
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44578889999999999999999999876655
No 313
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=83.72 E-value=0.74 Score=53.65 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.3
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCE
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDV 269 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adv 269 (615)
+++.||+|||||+|+..+|+..++.+
T Consensus 241 ILL~GPPGTGKT~LAraiA~elg~~~ 266 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVANETGAFF 266 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHTTTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 68899999999999999999877753
No 314
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=83.46 E-value=0.42 Score=52.37 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=28.7
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
....++|.|++|||||++++.+++..+.. ++++-|+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~-fv~vn~~ 272 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAF-FFLINGP 272 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSE-EEEEEHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCC-EEEEEch
Confidence 34569999999999999999999887654 5666654
No 315
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.41 E-value=0.4 Score=49.05 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=28.6
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC--------C--CCEEEEEeecC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS--------N--SDVIVYVGCGE 277 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~--------~--adviV~~~iGE 277 (615)
.+..+.|.|++|+|||++++.+++.. + .-.++++-|.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 35678999999999999999998753 1 12467777764
No 316
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=83.31 E-value=0.39 Score=43.66 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.9
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|++|+|||+|+..++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999863
No 317
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=83.05 E-value=0.42 Score=41.98 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.3
Q ss_pred eeeccCCCCCCcchhhHHhhhcC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
++++.|++|+|||+|+..+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 318
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.05 E-value=0.36 Score=49.34 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=34.6
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhcC--CCC-EEEEEeecCcchHHHHHHHh
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKYS--NSD-VIVYVGCGERGNEMAEVLRD 288 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~~--~ad-viV~~~iGERg~Ev~e~~~~ 288 (615)
..+|+.+++.|+.|+||||++..||.+. +.. -+.++.+.-......+.+..
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~ 155 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKT 155 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHH
Confidence 3579999999999999999999988642 223 35555555444444444444
No 319
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=82.94 E-value=0.45 Score=41.77 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999988764
No 320
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=82.86 E-value=0.38 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.1
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+||.|++||||||++..|+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999988754
No 321
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=82.78 E-value=0.44 Score=42.07 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999998764
No 322
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.59 E-value=0.45 Score=48.39 Aligned_cols=23 Identities=13% Similarity=0.426 Sum_probs=17.4
Q ss_pred CceeeccCCCCCCcchhhHHhhh
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~ 263 (615)
+-.++|.|++||||||+++.|++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999887
No 323
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.40 E-value=5.1 Score=53.25 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=82.9
Q ss_pred ccCceeeccCCCCCCcchhhHH-hhhcCCCCEEEEEeecCcchHHHHHHHhcccccccccCccccCcce-EEEEEeCCCC
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQA-LSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKR-TTLVANTSNM 316 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~-la~~~~adviV~~~iGERg~Ev~e~~~~f~~l~~~~~g~~~~~m~r-tvlvanTsn~ 316 (615)
..|.-+.+.||+|||||+++.. +++..+ ..++.+-|..+.. ...+...+...-.-+. ..+ ..+...
T Consensus 1302 ~~~~pvLL~GptGtGKT~li~~~L~~l~~-~~~~~infS~~Tt-a~~l~~~~e~~~e~~~------~~~~G~~~~p---- 1369 (3245)
T 3vkg_A 1302 SEHRPLILCGPPGSGKTMTLTSTLRAFPD-FEVVSLNFSSATT-PELLLKTFDHHCEYKR------TPSGETVLRP---- 1369 (3245)
T ss_dssp HTTCCCEEESSTTSSHHHHHHHHGGGCTT-EEEEEECCCTTCC-HHHHHHHHHHHEEEEE------CTTSCEEEEE----
T ss_pred HCCCcEEEECCCCCCHHHHHHHHHHhCCC-CceEEEEeeCCCC-HHHHHHHHhhcceEEe------ccCCCcccCC----
Confidence 4677899999999999988765 444332 2345566655432 2333333211000000 000 122211
Q ss_pred CHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCC-chhhhHHHHHHhhccccccCC
Q psy13480 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA-YLGARLASFYERAGRVKCLGN 395 (615)
Q Consensus 317 p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~-~l~s~La~~~ERAG~~~~~~~ 395 (615)
...|+.+++++|++. ||..+-|.+ ...+-|-+++|.-|-...
T Consensus 1370 -------------------~~~Gk~~VlFiDDiN---------------mp~~D~yGtQ~~ielLrqlld~~g~yd~--- 1412 (3245)
T 3vkg_A 1370 -------------------TQLGKWLVVFCDEIN---------------LPSTDKYGTQRVITFIRQMVEKGGFWRT--- 1412 (3245)
T ss_dssp -------------------SSTTCEEEEEETTTT---------------CCCCCTTSCCHHHHHHHHHHHHSEEEET---
T ss_pred -------------------CcCCceEEEEecccC---------------CCCccccccccHHHHHHHHHHcCCeEEC---
Confidence 125999999999996 888888875 456778888998775431
Q ss_pred CCCCC------ceEEEEeecCCCCCCCCchhhhhhcccce
Q psy13480 396 PDREG------SVSIVGAVSPPGGDFSDPVTSATLGIVQV 429 (615)
Q Consensus 396 ~~~~G------SIT~i~~Vs~~ggD~s~PV~~~t~~i~dg 429 (615)
..+ .+..|+|.-|||+-=..|++..+.+....
T Consensus 1413 --~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v 1450 (3245)
T 3vkg_A 1413 --SDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI 1450 (3245)
T ss_dssp --TTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCE
T ss_pred --CCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceE
Confidence 122 35678888888632345666666555444
No 324
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=82.29 E-value=0.19 Score=47.34 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.2
Q ss_pred ceeeccCCCCCCcchhhHHhhhcC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
..++|.|++|+|||||+..|++.-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 325
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.26 E-value=0.43 Score=48.48 Aligned_cols=26 Identities=23% Similarity=0.051 Sum_probs=22.1
Q ss_pred cccCceeeccCCCCCCcchhhHHhhh
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
-+++..++|.|++|+||||++..+++
T Consensus 33 ~~~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 33 PRDLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp TTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34555589999999999999999988
No 326
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=82.23 E-value=0.64 Score=49.98 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=30.0
Q ss_pred eeeccCCCCCCcchhhHHhhhcC---C-CCEEEEEeecCcchHHHH
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS---N-SDVIVYVGCGERGNEMAE 284 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~---~-adviV~~~iGERg~Ev~e 284 (615)
-+.|.|++|||||+++..++++- . ..+++.+..|.-..+|.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHh
Confidence 89999999999999999887642 2 235666666654455544
No 327
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.21 E-value=0.4 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=19.7
Q ss_pred eeccCCCCCCcchhhHHhhhc
Q psy13480 244 TAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++.||+|+|||+++..+++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999885
No 328
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=82.15 E-value=0.43 Score=46.01 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.5
Q ss_pred eeeccCCCCCCcchhhHHhhhcCC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.+.|.|++||||||+...|++.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999987543
No 329
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=82.13 E-value=0.45 Score=42.41 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|++|+|||+|+..+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6789999999999999998754
No 330
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=82.04 E-value=0.61 Score=45.79 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.5
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.|..++|.|++|+|||+|+..|++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4677999999999999999999875
No 331
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=82.02 E-value=0.46 Score=46.04 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=24.5
Q ss_pred eeccCCCCCCcchhhHHhhhcCCCCEEEEEeecC
Q psy13480 244 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGE 277 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGE 277 (615)
+.|+||+|+||+|.+..|++.-+ ++++.+|.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g---~~~istGd 33 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG---FVHISTGD 33 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC---CEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC---CeEEcHHH
Confidence 56899999999999999987422 56777773
No 332
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=81.93 E-value=0.54 Score=41.09 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|..|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999998764
No 333
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=81.77 E-value=0.53 Score=41.33 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6789999999999999998754
No 334
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.76 E-value=0.71 Score=50.85 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=29.4
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCCCC-EEEEEeec
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSNSD-VIVYVGCG 276 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~ad-viV~~~iG 276 (615)
..|+-+.+.|++|||||+|++.|++..... ..++..|.
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~ 77 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR 77 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCT
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 456789999999999999999999876433 34555554
No 335
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.63 E-value=0.74 Score=46.88 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=32.4
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCC-CC-EEEEEeecCcchHH
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSN-SD-VIVYVGCGERGNEM 282 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~-ad-viV~~~iGERg~Ev 282 (615)
.+..+.|.|++|||||++++.|++.+. .+ -+|++-|+.-..+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l 68 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESL 68 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHH
Confidence 356788999999999999999988542 22 36777888765544
No 336
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=81.49 E-value=0.51 Score=41.90 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.4
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|++|+|||+|+..+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999998753
No 337
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=81.46 E-value=0.51 Score=41.71 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.8
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999998763
No 338
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=81.43 E-value=0.54 Score=43.01 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.9
Q ss_pred ceeeccCCCCCCcchhhHHhhhcC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
=++++.|++|+|||+|+..+....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999998653
No 339
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=81.38 E-value=0.49 Score=50.58 Aligned_cols=27 Identities=26% Similarity=0.167 Sum_probs=24.3
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+.+|.+++|.|++|+|||||+.+|+..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 467899999999999999999999873
No 340
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=81.34 E-value=0.66 Score=41.12 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6789999999999999998754
No 341
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=81.28 E-value=0.53 Score=52.62 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=26.2
Q ss_pred cccccCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 236 FPCVLGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 236 ~Pi~kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+-+..|..++|.|++|||||+|+..|++..
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 346678999999999999999999998754
No 342
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=81.12 E-value=0.49 Score=45.34 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.0
Q ss_pred eeccCCCCCCcchhhHHhhhc
Q psy13480 244 TAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~ 264 (615)
+.|.||+|+|||||+..|.+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999988654
No 343
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.11 E-value=0.67 Score=40.86 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.4
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988754
No 344
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.06 E-value=0.48 Score=46.78 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=22.6
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+.+...++|.||+|||||++...|++.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 334456899999999999999999885
No 345
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=80.92 E-value=0.56 Score=46.64 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=24.1
Q ss_pred eeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
|.||.|++|+||||++..|++.-+ +.++.+|
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g---~~~is~g 40 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG---IPQISTG 40 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT---CCEECHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC---CCeeech
Confidence 789999999999999999987432 3344444
No 346
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=80.92 E-value=0.68 Score=40.77 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6789999999999999998753
No 347
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.88 E-value=0.57 Score=47.32 Aligned_cols=23 Identities=35% Similarity=0.278 Sum_probs=20.4
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..+.+.|++|+|||++++.+++.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999999875
No 348
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=80.82 E-value=0.5 Score=48.97 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.1
Q ss_pred ccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 235 LFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 235 l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+.+.+|..++|.|++|+|||||+..|+..
T Consensus 50 ~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 50 MPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp GGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 345789999999999999999999998753
No 349
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=80.73 E-value=0.78 Score=49.91 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=25.7
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEE
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVY 272 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~ 272 (615)
..+.+.|++|||||++...||+..+...+.+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~~v 81 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence 3488999999999999999999877765443
No 350
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=80.67 E-value=2 Score=51.76 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=33.2
Q ss_pred CceeeccCCCCCCcchhhHHhhhcC----CCC-EEEEEeecCcchHHHHHHHhc
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYS----NSD-VIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~----~ad-viV~~~iGERg~Ev~e~~~~f 289 (615)
...++|.|+.|+|||+|+.++++.. ..+ -++++-+++..+ ...++..+
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d-~~~IL~~L 202 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEML 202 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS-HHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC-HHHHHHHH
Confidence 4678999999999999999887521 223 377887877543 44444443
No 351
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=80.65 E-value=0.51 Score=48.01 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.4
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++.++|.|.+|+|||||+..|...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 6678999999999999999998764
No 352
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=80.64 E-value=0.21 Score=46.91 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.0
Q ss_pred eeeccCCCCCCcchhhHHhhhcC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
.++|.|++|+||||++..|+++-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 36789999999999999998753
No 353
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=80.60 E-value=0.58 Score=41.87 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|++|+|||+|+..+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999998764
No 354
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=80.50 E-value=7 Score=42.58 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=19.8
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.|=+++|.|.+|+|||+|+..+...
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999887653
No 355
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.47 E-value=0.49 Score=47.84 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.2
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
++-+.|.|++|||||++++.+++...
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34599999999999999999988654
No 356
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=80.43 E-value=0.4 Score=49.84 Aligned_cols=26 Identities=12% Similarity=-0.095 Sum_probs=22.7
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++|..+.|.|++|||||++...+++.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 57888999999999999999987653
No 357
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=80.40 E-value=0.62 Score=42.07 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998763
No 358
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=80.40 E-value=0.48 Score=41.96 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.3
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5789999999999999988643
No 359
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=80.29 E-value=0.63 Score=41.65 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|++|+|||+|+..+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998754
No 360
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=80.21 E-value=0.57 Score=41.44 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999998754
No 361
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=80.17 E-value=0.75 Score=40.52 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6789999999999999998753
No 362
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=80.12 E-value=0.68 Score=43.82 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.0
Q ss_pred CceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
+-.++|.|++|||||++...|++.-+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34688999999999999999998533
No 363
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=80.02 E-value=0.62 Score=41.14 Aligned_cols=22 Identities=27% Similarity=0.164 Sum_probs=19.4
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998753
No 364
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=79.95 E-value=0.66 Score=41.00 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999998764
No 365
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=79.83 E-value=1.8 Score=44.28 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=36.0
Q ss_pred ceeeccCCCCCCcchhhHHhhhc------CCCCEEEEEeec-Ccc-hHHHHHHHhcc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY------SNSDVIVYVGCG-ERG-NEMAEVLRDFP 290 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~------~~adviV~~~iG-ERg-~Ev~e~~~~f~ 290 (615)
....+.|++|+|||++...+++. .+.|+..+-+-| +++ .+++++++.+.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~ 75 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLN 75 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHh
Confidence 45778999999999999999985 256877666554 444 35777776663
No 366
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=79.77 E-value=8.9 Score=50.35 Aligned_cols=137 Identities=19% Similarity=0.219 Sum_probs=73.3
Q ss_pred ccCceeeccCCCCCCcchhhHH-hhhcCCCCEEEEEeecC--cchHHHHHHHhcccccccccCccccCcceEEEEEeCCC
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQA-LSKYSNSDVIVYVGCGE--RGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSN 315 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~-la~~~~adviV~~~iGE--Rg~Ev~e~~~~f~~l~~~~~g~~~~~m~rtvlvanTsn 315 (615)
..|.-+.+.||+|||||+++.. +++..+.. ++.+-+-. ..+.+.+.++..-+.. . ..+..+....
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~-~~~infsa~ts~~~~~~~i~~~~~~~--------~-~~~g~~~~P~-- 1332 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYD-VVGINFSKDTTTEHILSALHRHTNYV--------T-TSKGLTLLPK-- 1332 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCSSCE-EEEEECCTTCCHHHHHHHHHHHBCCE--------E-ETTTEEEEEB--
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCCCCc-eEEEEeecCCCHHHHHHHHHHHhhhc--------c-ccCCccccCC--
Confidence 4578899999999999999955 44433332 22232222 2333444443311100 0 0001111110
Q ss_pred CCHHHHHHHHHHHhhHHHHHHhCCCcEEEEeeCchHHHHHHHHHHhhcCCCCCCCCCCC-chhhhHHHHHHhhccccccC
Q psy13480 316 MPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA-YLGARLASFYERAGRVKCLG 394 (615)
Q Consensus 316 ~p~~~R~~s~~tg~tiAEyfrd~G~~Vll~~Ds~tR~AeAlREIs~~lgE~P~~eGYP~-~l~s~La~~~ERAG~~~~~~ 394 (615)
..|+..++++|++. ||..+.|=+ .....|-+++|.-|-...
T Consensus 1333 ---------------------~~gk~~VlFiDEin---------------mp~~d~yg~q~~lelLRq~le~gg~yd~-- 1374 (2695)
T 4akg_A 1333 ---------------------SDIKNLVLFCDEIN---------------LPKLDKYGSQNVVLFLRQLMEKQGFWKT-- 1374 (2695)
T ss_dssp ---------------------SSSSCEEEEEETTT---------------CSCCCSSSCCHHHHHHHHHHHTSSEECT--
T ss_pred ---------------------CCCceEEEEecccc---------------cccccccCchhHHHHHHHHHhcCCEEEc--
Confidence 26888999999996 677776632 244567777886553320
Q ss_pred CCCCC-----CceEEEEeecCCCCCCCCchhhhhhccc
Q psy13480 395 NPDRE-----GSVSIVGAVSPPGGDFSDPVTSATLGIV 427 (615)
Q Consensus 395 ~~~~~-----GSIT~i~~Vs~~ggD~s~PV~~~t~~i~ 427 (615)
... -.+..|+|.-||||-=..+|+....+..
T Consensus 1375 --~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf 1410 (2695)
T 4akg_A 1375 --PENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA 1410 (2695)
T ss_dssp --TTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE
T ss_pred --CCCcEEEecCEEEEEecCCCccCCCccCChhhhhee
Confidence 011 2378899999985211234444444443
No 367
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.68 E-value=1.2 Score=51.94 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=25.2
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEE
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVI 270 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~advi 270 (615)
-.+++.||+|||||.+...+|+.+++..+
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~ 540 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceE
Confidence 35899999999999999999998887644
No 368
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=79.60 E-value=0.68 Score=41.47 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999998754
No 369
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=79.60 E-value=1 Score=43.44 Aligned_cols=37 Identities=27% Similarity=0.170 Sum_probs=26.8
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcC----CCCEEEEEee
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYS----NSDVIVYVGC 275 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~----~adviV~~~i 275 (615)
..|.-++|.|++|+||||++..+.+.. .-|.+++-..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~rG~~lvaDD~v~i~~~ 54 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQE 54 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHTTCEEEESSEEEEEES
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHcCCeEecCCEEEEEEe
Confidence 357789999999999999999887632 3355544443
No 370
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=79.57 E-value=0.66 Score=41.54 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.3
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+.-++++.|.+|+|||+|+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999998753
No 371
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=79.51 E-value=0.69 Score=41.74 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999998754
No 372
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=79.49 E-value=0.6 Score=41.74 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.0
Q ss_pred eeeccCCCCCCcchhhHHhhh
Q psy13480 243 TTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~ 263 (615)
++++.|.+|+|||+|+..+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 678999999999999998865
No 373
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=79.49 E-value=0.71 Score=40.95 Aligned_cols=24 Identities=33% Similarity=0.193 Sum_probs=20.6
Q ss_pred CceeeccCCCCCCcchhhHHhhhc
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.-++++.|.+|+|||+|+..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999998654
No 374
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=79.47 E-value=0.66 Score=42.02 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.9
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999998764
No 375
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=79.34 E-value=0.68 Score=48.69 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=23.3
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
++-.+.|.||.|||||+|...||+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 445688999999999999999998654
No 376
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=79.24 E-value=1.1 Score=43.44 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.5
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+|--+.|-|+.|+||||++..|+++
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 6778899999999999999999875
No 377
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=79.11 E-value=0.73 Score=41.09 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998764
No 378
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=79.06 E-value=0.61 Score=41.67 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.8
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6789999999999999998765
No 379
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=79.06 E-value=0.74 Score=41.44 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999988754
No 380
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=79.02 E-value=0.75 Score=45.10 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=24.4
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeec
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iG 276 (615)
--+.|+||+|+||+|.+..|++.-+ +.++.+|
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g---~~hIstG 61 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFH---FNHLSSG 61 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHC---CEEECHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHC---CceEcHH
Confidence 3456899999999999999987422 4566666
No 381
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=79.00 E-value=0.66 Score=42.96 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=20.9
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+.-++++.|++|+|||+|+..+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999864
No 382
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=78.81 E-value=0.67 Score=43.78 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.4
Q ss_pred cCceeeccCCCCCCcchhhHHhhh
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
+|.-..|.|++|+||||++.++++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 477888999999999999876654
No 383
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=78.81 E-value=0.66 Score=54.96 Aligned_cols=31 Identities=19% Similarity=0.037 Sum_probs=27.6
Q ss_pred eccccccccCceeeccCCCCCCcchhhHHhh
Q psy13480 232 LDSLFPCVLGGTTAIPGAFGCGKTVISQALS 262 (615)
Q Consensus 232 iD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la 262 (615)
-|.-|.+.+|+.++|.||.|+||||++.+++
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4666788899999999999999999999884
No 384
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=78.72 E-value=0.77 Score=41.22 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.5
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6789999999999999998754
No 385
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=78.59 E-value=0.82 Score=45.11 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=20.0
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+|-.+.|-|+.|+||||++..|+++
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36778899999999999999998875
No 386
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=78.58 E-value=0.72 Score=53.70 Aligned_cols=30 Identities=13% Similarity=-0.007 Sum_probs=25.4
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhhh
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
|.-+. .+|+.++|.||.|+||||++.+++.
T Consensus 600 disl~-~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 600 PLNLS-PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp EEEEC-SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccccc-CCCcEEEEECCCCCChHHHHHHHHH
Confidence 44444 6899999999999999999998864
No 387
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=78.51 E-value=0.6 Score=42.28 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999998764
No 388
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=78.49 E-value=1.6 Score=47.93 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=35.4
Q ss_pred CceeeccCCCCCCcchhhHHhhh------cCCCCEEEEEeecCcc-hHHHHHHHhc
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSK------YSNSDVIVYVGCGERG-NEMAEVLRDF 289 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~------~~~adviV~~~iGERg-~Ev~e~~~~f 289 (615)
...++|.|..|+|||+|+..+++ ....|.++++.+++.. ..+.+++..+
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 35789999999999999999985 1345788888777643 2444554443
No 389
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=78.46 E-value=0.91 Score=41.38 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.8
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|..|+|||+|+..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6789999999999999999764
No 390
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=78.41 E-value=0.7 Score=48.15 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.7
Q ss_pred CceeeccCCCCCCcchhhHHhhhc
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.+++|.|++|+|||||+..|+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999999998763
No 391
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=78.35 E-value=0.79 Score=42.27 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=19.4
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999988764
No 392
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=78.19 E-value=0.8 Score=41.11 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.5
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5789999999999999998754
No 393
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=78.09 E-value=0.72 Score=41.13 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=19.1
Q ss_pred eeeccCCCCCCcchhhHHhhh
Q psy13480 243 TTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~ 263 (615)
+++|.|.+|+|||+|+..+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 678999999999999999875
No 394
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=78.07 E-value=0.69 Score=41.95 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6789999999999999998764
No 395
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=77.99 E-value=3.6 Score=42.51 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.4
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-+++|.|.+++|||+|+..|...
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTS
T ss_pred CeEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999998753
No 396
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=77.95 E-value=1.1 Score=49.94 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=30.1
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc---CCCCEEEEEeecCcchHHH
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY---SNSDVIVYVGCGERGNEMA 283 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~---~~adviV~~~iGERg~Ev~ 283 (615)
.++.+.|.||+|||||+++..+++. ....+.+.+..|.-..++.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~ 249 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLG 249 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhH
Confidence 5788999999999999999887652 3334555555554333333
No 397
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=77.95 E-value=0.63 Score=45.13 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.8
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+|-.+.|-|..|+||||++..|+++-
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35678899999999999999999875
No 398
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=77.94 E-value=0.82 Score=41.87 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 399
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=77.93 E-value=0.54 Score=55.57 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=26.9
Q ss_pred ccccccccCceeeccCCCCCCcchhhHHhh
Q psy13480 233 DSLFPCVLGGTTAIPGAFGCGKTVISQALS 262 (615)
Q Consensus 233 D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la 262 (615)
|.-|.+.+|+.++|.||.|+||||++.+++
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence 566778899999999999999999999875
No 400
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=77.87 E-value=0.7 Score=42.20 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.8
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|++|+|||+|+..+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 401
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=77.85 E-value=1.5 Score=42.96 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=35.0
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHHHHHhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e~~~~f 289 (615)
.+|--+.+-|+.|+||||++..|+++-...+.++---+ ++....+.++++
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~-~~t~~g~~ir~~ 52 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPE-RSTRIGGLINEY 52 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSC-TTSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecC-CCChHHHHHHHH
Confidence 47888999999999999999999987555543333221 245655556554
No 402
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=77.81 E-value=0.84 Score=40.92 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6789999999999999998754
No 403
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=77.79 E-value=0.97 Score=40.80 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.2
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4679999999999999998754
No 404
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=77.66 E-value=0.85 Score=40.96 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=20.2
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=++++.|.+|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999999999988764
No 405
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.62 E-value=0.8 Score=42.90 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.2
Q ss_pred eeeccCCCCCCcchhhHHhhhcC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
++++.|++|+|||+|+..+....
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999998653
No 406
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=77.58 E-value=0.69 Score=46.57 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.9
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++|.|++||||||++..|++.
T Consensus 77 iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5889999999999999999963
No 407
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=77.50 E-value=0.71 Score=42.20 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999998764
No 408
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.37 E-value=0.54 Score=42.41 Aligned_cols=25 Identities=32% Similarity=0.165 Sum_probs=21.4
Q ss_pred ccCceeeccCCCCCCcchhhHHhhh
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
-+.=++++.|++|+|||+|+..+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4456899999999999999998874
No 409
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=77.36 E-value=0.32 Score=51.01 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=26.8
Q ss_pred ceeee-ccccccccCceeeccCCCCCCcchhhHHhh
Q psy13480 228 GQRVL-DSLFPCVLGGTTAIPGAFGCGKTVISQALS 262 (615)
Q Consensus 228 G~rvi-D~l~Pi~kGq~~~I~g~~G~GKt~l~~~la 262 (615)
+.+++ |.=|.+.+| ..+|.|+.|+|||+|+..|.
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 33444 334678899 99999999999999998773
No 410
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=77.35 E-value=0.8 Score=41.86 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.4
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5689999999999999998754
No 411
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=77.25 E-value=0.77 Score=43.35 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=19.4
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..++|.|++|+|||||+..|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999887753
No 412
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=77.20 E-value=3.5 Score=45.47 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=21.0
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+...++|.|.+|+||||+...|+.+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34557899999999999999999854
No 413
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=77.17 E-value=0.29 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred ceeeccCCCCCCcchhhHHhhh
Q psy13480 242 GTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~ 263 (615)
+..+|.||+|+|||||+..|+-
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6779999999999999998875
No 414
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=77.16 E-value=0.69 Score=41.60 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=20.0
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999999864
No 415
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=77.08 E-value=0.9 Score=41.43 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.5
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999998753
No 416
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=77.04 E-value=0.74 Score=45.33 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=23.0
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+|-.+.|-|+.|+||||++..|+++-
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45678899999999999999999875
No 417
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=77.00 E-value=0.93 Score=40.95 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.5
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6789999999999999998754
No 418
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=76.74 E-value=0.92 Score=41.70 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.3
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999998754
No 419
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=76.73 E-value=0.92 Score=41.20 Aligned_cols=26 Identities=19% Similarity=0.089 Sum_probs=21.7
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+.=++++.|.+|+|||+|+..+....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 33478999999999999999988643
No 420
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.67 E-value=0.78 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.4
Q ss_pred eeeccCCCCCCcchhhHHhhhcCC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.+.|.|++|||||+|...||+.-+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999998654
No 421
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=76.57 E-value=0.9 Score=41.92 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6789999999999999998764
No 422
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=76.50 E-value=0.97 Score=44.88 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.2
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+.+.|++|+|||+++..+++.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 423
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=76.50 E-value=0.91 Score=48.11 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.7
Q ss_pred ccccCce--eeccCCCCCCcchhhHHhhh
Q psy13480 237 PCVLGGT--TAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 237 Pi~kGq~--~~I~g~~G~GKt~l~~~la~ 263 (615)
-+..|++ ++|.|++|+||||+...|++
T Consensus 18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 18 RIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3456766 89999999999999998876
No 424
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=76.47 E-value=0.95 Score=41.38 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6789999999999999998754
No 425
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=76.38 E-value=0.83 Score=43.23 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=19.2
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++|.|++|+|||||+..|++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999988764
No 426
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=76.15 E-value=0.98 Score=41.58 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6789999999999999988764
No 427
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=76.01 E-value=1 Score=41.43 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=19.8
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6789999999999999998764
No 428
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=75.97 E-value=0.9 Score=40.97 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.2
Q ss_pred eeeccCCCCCCcchhhHHhhh
Q psy13480 243 TTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~ 263 (615)
++++.|.+|+|||+|+..+..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 688999999999999999874
No 429
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=75.85 E-value=0.76 Score=42.12 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.3
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-++++.|++|+|||+|+..+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999999999998764
No 430
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=75.79 E-value=3 Score=45.61 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=18.6
Q ss_pred eeeccCCCCCCcchhhHHhhh
Q psy13480 243 TTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~ 263 (615)
++++.|.+|+|||+|+..+..
T Consensus 43 kV~lvG~~~vGKSSLl~~l~~ 63 (535)
T 3dpu_A 43 KVHLIGDGMAGKTSLLKQLIG 63 (535)
T ss_dssp EEEEESSSCSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 678999999999999998764
No 431
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=75.77 E-value=0.99 Score=43.51 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.8
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6789999999999999998864
No 432
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=75.72 E-value=0.56 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.9
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++|.|++|+|||||+..|+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 3899999999999999999865
No 433
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=75.56 E-value=1 Score=41.81 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998753
No 434
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=75.54 E-value=1 Score=41.52 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998754
No 435
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=75.49 E-value=1 Score=42.00 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=19.9
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999764
No 436
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=75.39 E-value=0.99 Score=41.41 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.5
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999754
No 437
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=75.35 E-value=0.87 Score=47.86 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=21.2
Q ss_pred eeeccCCCCCCcchhhHHhhhcCC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.++|.|++|+|||+|...|++.-+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 478999999999999999998644
No 438
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=75.08 E-value=1.3 Score=40.54 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.3
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998753
No 439
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.05 E-value=1.1 Score=46.95 Aligned_cols=25 Identities=40% Similarity=0.343 Sum_probs=21.4
Q ss_pred ceeeccCCCCCCcchhhHHhhhcCC
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
-.+.|.||+|+|||+|...||+.-+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 3578999999999999999998644
No 440
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=74.99 E-value=0.85 Score=41.19 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=9.2
Q ss_pred eeeccCCCCCCcchhhHHhhh
Q psy13480 243 TTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~ 263 (615)
+++|.|.+|+|||+|+..+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 678999999999999988764
No 441
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=74.90 E-value=0.91 Score=41.67 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=20.1
Q ss_pred eeeccCCCCCCcchhhHHhhhcC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS 265 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~ 265 (615)
+++|.|.+|+|||+|+..+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 67899999999999999988643
No 442
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=74.78 E-value=2.6 Score=41.93 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=31.3
Q ss_pred eeccCCCCCCcchhhHHhhhc---CCCCEEEEEeecCcchHHHHHHHhcc
Q psy13480 244 TAIPGAFGCGKTVISQALSKY---SNSDVIVYVGCGERGNEMAEVLRDFP 290 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~---~~adviV~~~iGERg~Ev~e~~~~f~ 290 (615)
+.+.|++|+|||+++..+|.. ...+++|....-+...+....+..++
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~ 58 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLP 58 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCcc
Confidence 567899999999998777643 34566555554444555566666554
No 443
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=74.77 E-value=0.78 Score=46.73 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=18.0
Q ss_pred eeccCCCCCCcchhhHHhhh
Q psy13480 244 TAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~ 263 (615)
++|.|++|+|||||+..|+.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 38999999999999999864
No 444
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=74.68 E-value=0.73 Score=49.58 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=29.6
Q ss_pred eeccccccccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 231 VLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 231 viD~l~Pi~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.-+.-+.+-.|..++|.|++|+|||||+..|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 3566678889999999999999999999999764
No 445
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=74.54 E-value=1.1 Score=41.17 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6789999999999999998764
No 446
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=74.53 E-value=1 Score=41.09 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=20.9
Q ss_pred CceeeccCCCCCCcchhhHHhhhc
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
--++++.|.+|+|||+|+..+...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999854
No 447
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=74.50 E-value=1.1 Score=44.23 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.2
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+.+.|++|+|||+++..+++.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 4899999999999999999885
No 448
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=74.49 E-value=1.1 Score=40.64 Aligned_cols=21 Identities=19% Similarity=-0.005 Sum_probs=18.3
Q ss_pred eeeccCCCCCCcchhhHHhhh
Q psy13480 243 TTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~ 263 (615)
++++.|.+|+|||+|++.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999977754
No 449
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=74.45 E-value=0.98 Score=44.97 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=19.2
Q ss_pred eeeccCCCCCCcchhhHHhhh
Q psy13480 243 TTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~ 263 (615)
.+.|.|++|+||||+...|++
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999997
No 450
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=74.43 E-value=0.76 Score=42.90 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.2
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++++.|++|+|||+|+..+...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998753
No 451
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=74.41 E-value=0.93 Score=44.89 Aligned_cols=22 Identities=41% Similarity=0.453 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|++|+|||+|...+...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999998754
No 452
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=74.37 E-value=1.2 Score=43.50 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=19.9
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+|+.|+.||||||+...+++.
T Consensus 11 ~iglTGgigsGKStv~~~l~~~ 32 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAAR 32 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 4789999999999999999883
No 453
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=74.36 E-value=1.1 Score=40.70 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6789999999999999998754
No 454
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=74.35 E-value=1.1 Score=41.35 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.8
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999998764
No 455
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=74.29 E-value=0.94 Score=42.26 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.8
Q ss_pred eeeccCCCCCCcchhhHHhhh
Q psy13480 243 TTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~ 263 (615)
++++.|.+|+|||+|+..+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 678999999999999998853
No 456
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=74.14 E-value=1.2 Score=40.68 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.8
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6889999999999999998763
No 457
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=74.14 E-value=0.89 Score=41.38 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=19.8
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999864
No 458
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=74.10 E-value=1 Score=41.40 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.5
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 459
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=74.09 E-value=1.1 Score=51.99 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=21.6
Q ss_pred CceeeccCCCCCCcchhhHHhhh
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~ 263 (615)
|+.++|.||.|+||||++.+++-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 99999999999999999998864
No 460
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=74.09 E-value=0.87 Score=41.68 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998754
No 461
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=73.94 E-value=1.3 Score=47.89 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.3
Q ss_pred ccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 239 VLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 239 ~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.....+.+.|++|||||+++..+++.
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34557899999999999999999875
No 462
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=73.90 E-value=1.1 Score=41.66 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.9
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 7789999999999999998864
No 463
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=73.77 E-value=1.2 Score=41.15 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6789999999999999998764
No 464
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=73.54 E-value=0.96 Score=42.71 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.2
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-+++|.|.+|+|||+|+..++++
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36789999999999999998865
No 465
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=73.45 E-value=1.2 Score=47.36 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=22.7
Q ss_pred cccCceeeccCCCCCCcchhhHHhhh
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSK 263 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~ 263 (615)
+..|+..+|.|+.|+|||+|+..|+-
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999999998764
No 466
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=73.29 E-value=1.2 Score=41.56 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6789999999999999998764
No 467
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=73.02 E-value=1.2 Score=41.18 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.5
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6789999999999999998753
No 468
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=72.70 E-value=1.1 Score=42.13 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6789999999999999998764
No 469
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=72.58 E-value=1.2 Score=40.93 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.0
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6789999999999999988754
No 470
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=72.58 E-value=1.2 Score=41.19 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.0
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998753
No 471
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=72.58 E-value=1.1 Score=42.16 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.9
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999764
No 472
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=72.50 E-value=1.3 Score=47.49 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=23.1
Q ss_pred cccCceeeccCCCCCCcchhhHHhhhc
Q psy13480 238 CVLGGTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 238 i~kGq~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+..|.+++|.|.+|+|||||+..|...
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 456788999999999999999999764
No 473
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=72.48 E-value=2.7 Score=45.37 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=28.6
Q ss_pred CceeeccCCCCCCcchhhHHhhhcC----CCCEEEEEeecCcchHHHHH
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKYS----NSDVIVYVGCGERGNEMAEV 285 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~~----~adviV~~~iGERg~Ev~e~ 285 (615)
...+++.|..|+||||+...||.+. ... +.++.|.-...-..+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~k-Vllvd~D~~r~~a~~q 147 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKK-VLVVSADVYRPAAIKQ 147 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCC-EEEEECCCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCe-EEEEecCCCCccHHHH
Confidence 4577888999999999999888542 333 4455555443333333
No 474
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=72.23 E-value=1.2 Score=41.40 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|++|+|||+|+..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998754
No 475
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=72.16 E-value=8.3 Score=39.33 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.7
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
...+.|++|+|||++...+|+.
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCchHHHHHHHHHHH
Confidence 4678999999999999999885
No 476
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=72.15 E-value=1.1 Score=41.61 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.1
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6789999999999999998753
No 477
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=72.14 E-value=1.1 Score=42.15 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.3
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
-.++|.|.+|+|||||+..++.+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999998865
No 478
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=72.13 E-value=1.3 Score=46.05 Aligned_cols=24 Identities=25% Similarity=0.294 Sum_probs=21.1
Q ss_pred eeeccCCCCCCcchhhHHhhhcCC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYSN 266 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~~ 266 (615)
.+.|.||+|+|||+|...||+.-+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCccCHHHHHHHHHHhCC
Confidence 578999999999999999998644
No 479
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=72.08 E-value=1.6 Score=45.36 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=28.0
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC----CCCEEEEEeecC
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS----NSDVIVYVGCGE 277 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~----~adviV~~~iGE 277 (615)
.|..++|.|++|+|||+++..+.+.. .-|.+.+-..+.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~~ 184 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISK 184 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESSS
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcCC
Confidence 58889999999999999999887632 235555544443
No 480
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=71.96 E-value=2.1 Score=47.97 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=27.8
Q ss_pred CceeeccCCCCCCcchhhHHhhhc----CCCCEEEEEeecCcchHHHH
Q psy13480 241 GGTTAIPGAFGCGKTVISQALSKY----SNSDVIVYVGCGERGNEMAE 284 (615)
Q Consensus 241 Gq~~~I~g~~G~GKt~l~~~la~~----~~adviV~~~iGERg~Ev~e 284 (615)
.....|.||+|||||+++..++.+ ....|.|.+-.+.-..++.+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~ 242 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTE 242 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHH
Confidence 567889999999999988766542 23344555444433333333
No 481
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=71.96 E-value=1.3 Score=42.18 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999998764
No 482
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=71.89 E-value=1.5 Score=50.19 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=27.4
Q ss_pred eeeccCCCCCCcchhhHHhhhcC--CCCEEEEEeecC
Q psy13480 243 TTAIPGAFGCGKTVISQALSKYS--NSDVIVYVGCGE 277 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~~--~adviV~~~iGE 277 (615)
.+.+.|++|||||++++.+++.. ...-+|++-|++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSE 559 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechh
Confidence 58999999999999999999863 223467776664
No 483
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=71.86 E-value=1.2 Score=40.73 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.8
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998864
No 484
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=71.78 E-value=11 Score=42.32 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.3
Q ss_pred ceeeccCCCCCCcchhhHHhh
Q psy13480 242 GTTAIPGAFGCGKTVISQALS 262 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la 262 (615)
=+++|.|.+++|||||+..|.
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll 188 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLL 188 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHH
Confidence 378999999999999998764
No 485
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=71.76 E-value=1.3 Score=41.47 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=19.9
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=++++.|.+|+|||+|+..+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 37889999999999999888754
No 486
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=71.72 E-value=1.8 Score=42.09 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=31.3
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcC-CC---CEEEEEeecCcchHHHHHHHhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYS-NS---DVIVYVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~-~a---dviV~~~iGERg~Ev~e~~~~f 289 (615)
+|--+.|-|+.|+||||++..|+++- .. .+++.-- -.+..+.+.++++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~re--p~~t~~g~~ir~~ 53 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE--PGGTQLAEKLRSL 53 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeC--CCCCHHHHHHHHH
Confidence 57778899999999999999988752 22 3322221 1345566666554
No 487
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=71.67 E-value=0.97 Score=41.51 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=4.3
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999888754
No 488
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=71.51 E-value=1.2 Score=41.55 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.0
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6889999999999999998864
No 489
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.30 E-value=1.5 Score=43.44 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=20.0
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.+.|.|++|+|||+++..+++.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3889999999999999999875
No 490
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=71.22 E-value=1.3 Score=45.37 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.5
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
..+|.|+.|+|||||+..|...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 5689999999999999999854
No 491
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=71.20 E-value=1.5 Score=41.46 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
+++|.|.+|+|||+|+..+...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 492
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=71.17 E-value=1.3 Score=47.60 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.9
Q ss_pred eeccCCCCCCcchhhHHhhhc
Q psy13480 244 TAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 244 ~~I~g~~G~GKt~l~~~la~~ 264 (615)
++|.|++|+|||||+..|+..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 389999999999999999864
No 493
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=71.09 E-value=1.6 Score=44.44 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.0
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
.++.+.||+|||||.+...||+.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999985
No 494
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=70.95 E-value=1.4 Score=44.74 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.3
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
|.++|.|.+|+|||||+..|...
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57899999999999999998753
No 495
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=70.66 E-value=9.1 Score=41.35 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.8
Q ss_pred eeeccCCCCCCcchhhHHhh
Q psy13480 243 TTAIPGAFGCGKTVISQALS 262 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la 262 (615)
+++|.|.+++|||+|+..|.
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll 54 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLL 54 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67899999999999998763
No 496
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=70.65 E-value=1.9 Score=48.24 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=33.2
Q ss_pred cCceeeccCCCCCCcchhhHHhhhc-------CCCCEEEEEeecCcchHHHHHHH
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKY-------SNSDVIVYVGCGERGNEMAEVLR 287 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~-------~~adviV~~~iGERg~Ev~e~~~ 287 (615)
.+.-+.|.|++|||||+++..+... ....+.+.+..|+-...+.+.+.
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~ 217 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG 217 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHH
Confidence 5788999999999999987755321 12245666777776666655543
No 497
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=70.58 E-value=1.3 Score=41.02 Aligned_cols=23 Identities=26% Similarity=0.106 Sum_probs=19.9
Q ss_pred ceeeccCCCCCCcchhhHHhhhc
Q psy13480 242 GTTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 242 q~~~I~g~~G~GKt~l~~~la~~ 264 (615)
=++++.|++|+|||+|+..+...
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 36789999999999999998754
No 498
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=70.46 E-value=1.4 Score=43.35 Aligned_cols=48 Identities=27% Similarity=0.348 Sum_probs=31.4
Q ss_pred cCceeeccCCCCCCcchhhHHhhhcCCC----CEEE-EEeecCcchHHHHHHHhc
Q psy13480 240 LGGTTAIPGAFGCGKTVISQALSKYSNS----DVIV-YVGCGERGNEMAEVLRDF 289 (615)
Q Consensus 240 kGq~~~I~g~~G~GKt~l~~~la~~~~a----dviV-~~~iGERg~Ev~e~~~~f 289 (615)
+|-.+.|-|..|+||||+...|+++-.. ++++ .--=| ++.+.+.++++
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~--~t~~g~~ir~~ 72 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG--GTLLNESVRNL 72 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC--SSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC--CChHHHHHHHH
Confidence 4567788999999999999999876433 4433 21222 44555655554
No 499
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=70.38 E-value=1.8 Score=47.15 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=42.3
Q ss_pred CCCccccceeeecccccc--------ccCceeeccCCCCCCcchhhHHhhhcCCCCEEEEEeecCcchHHHH
Q psy13480 221 ANYPLLTGQRVLDSLFPC--------VLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAE 284 (615)
Q Consensus 221 ~~~pl~TG~rviD~l~Pi--------~kGq~~~I~g~~G~GKt~l~~~la~~~~adviV~~~iGERg~Ev~e 284 (615)
.+++|..+.|++..|--+ ..-.-..|.|++|||||+++..+++. . .+.|+....+-.+++.+
T Consensus 133 ~~t~l~~~~~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I~~~~~~-~-~~lVlTpT~~aa~~l~~ 202 (446)
T 3vkw_A 133 SESVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNF-E-EDLILVPGRQAAEMIRR 202 (446)
T ss_dssp GGGSCCHHHHHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHHHHHCCT-T-TCEEEESCHHHHHHHHH
T ss_pred CCchhhccHHHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHHHHHhcc-C-CeEEEeCCHHHHHHHHH
Confidence 456778888888666443 23334578999999999999988765 3 34677776664444433
No 500
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=70.38 E-value=1.3 Score=41.04 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.6
Q ss_pred eeeccCCCCCCcchhhHHhhhc
Q psy13480 243 TTAIPGAFGCGKTVISQALSKY 264 (615)
Q Consensus 243 ~~~I~g~~G~GKt~l~~~la~~ 264 (615)
++++.|.+|+|||+|+..+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6789999999999999988764
Done!