RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13480
(615 letters)
>gnl|CDD|233245 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 591
Score = 1224 bits (3168), Expect = 0.0
Identities = 489/592 (82%), Positives = 548/592 (92%), Gaps = 1/592 (0%)
Query: 16 RFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVG 75
+G++Y VSGPVV AE M+G+AMYELVRVG+ ELVGEIIRLEGD ATIQVYEETSG+TVG
Sbjct: 1 EYGYIYKVSGPVVVAENMAGAAMYELVRVGHDELVGEIIRLEGDKATIQVYEETSGLTVG 60
Query: 76 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFN 135
DPVLRTGKPLSVELGPGILG+IFDGIQRPLK I E SQSIYIP+GVN+PAL+RD WEF
Sbjct: 61 DPVLRTGKPLSVELGPGILGNIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFT 120
Query: 136 PMNLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFD 195
P L++G HITGGD YG V EN+L+KHK+++PP+A+GT+TYIAPAGNY VD+ VLE EF
Sbjct: 121 PKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYIAPAGNYTVDDTVLEVEFQ 180
Query: 196 GEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT 255
G K K++M+Q WPVR PRPVTEKLPAN PLLTGQRVLD+LFPCV GGTTAIPGAFGCGKT
Sbjct: 181 GVKKKFSMLQTWPVRSPRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT 240
Query: 256 VISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSN 315
VISQ+LSKYSNSD IVYVGCGERGNEMAEVL DFPELT+EVDG ESIMKRTTLVANTSN
Sbjct: 241 VISQSLSKYSNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSN 300
Query: 316 MPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAY 375
MPVAAREASIYTGITL+EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAY
Sbjct: 301 MPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAY 360
Query: 376 LGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDK 435
LGARLASFYERAGRVKCLG+P+REGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDK
Sbjct: 361 LGARLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDK 420
Query: 436 KLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
KLAQRKHFPS+NWLISYSKYMRAL++FY+K +PEFVPLRTK KEILQEEEDL+EIVQLVG
Sbjct: 421 KLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEFVPLRTKAKEILQEEEDLNEIVQLVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
K +LAE+DKITLEVAKL+K+DFLQQN Y+PYDRFCPFYKTVGM+RNMIAFYD++R AVE
Sbjct: 481 KDALAETDKITLEVAKLIKEDFLQQNGYTPYDRFCPFYKTVGMMRNMIAFYDLARQAVER 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQ 607
TAQ +NKITWS+I++S+ ++LY+LSSMKF+DP DGEAK +AD+++L ED+Q
Sbjct: 541 TAQDDNKITWSIIKESLGDLLYRLSSMKFEDPS-DGEAKIKADYEKLNEDMQ 591
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 907 bits (2347), Expect = 0.0
Identities = 306/598 (51%), Positives = 409/598 (68%), Gaps = 16/598 (2%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + +SGPVV AE M G+ MY++V+VG L+GEIIR+EG+ ATIQVYE+T+G+ G+
Sbjct: 3 GKIIRISGPVVVAEGMEGAKMYDVVKVGEMGLIGEIIRIEGNRATIQVYEDTAGIRPGEK 62
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V TG+PLSVELGPG+L SI+DGIQRPL I E S +I +G+N PAL+R W+F P
Sbjct: 63 VENTGRPLSVELGPGLLKSIYDGIQRPLDVIKETSG-DFIARGLNPPALDRKKKWDFVP- 120
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGE 197
+K G + GD G V E +L+ H++++PP G VT+IA G Y V++V+ +G
Sbjct: 121 AVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEYTVEDVIATVSTEGG 180
Query: 198 KSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVI 257
+ M+ WPVR+ RPV KLP PL+TGQRV+D+LFP GGT A+PG FG GKTV
Sbjct: 181 EVDVQMMTTWPVRKARPVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKTVS 240
Query: 258 SQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVT-ESIMKRTTLVANTSNM 316
LSK ++ D+++YVGCGERGNEM EVL++FPEL D T + +M RT L+ANTSNM
Sbjct: 241 QHTLSKLADGDIVIYVGCGERGNEMTEVLQEFPELK---DPNTGQPLMDRTVLIANTSNM 297
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EY+RDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 298 PVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 357
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
G+RLA FYERAGRV+ + +R GS++++GAVSPPGGDFS+PVT TL +V+VFW LD
Sbjct: 358 GSRLAEFYERAGRVRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAA 417
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA R+HFPSINWL SYS Y L +YD+N PE+ LR + EILQ E +L EIVQLVG
Sbjct: 418 LANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQEIVQLVG 477
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E +K L+VA+++++DFLQQN++ D +C K ML+ ++ D A+
Sbjct: 478 YDALPEKEKSILDVARIIREDFLQQNAFDEIDAYCSLRKQYLMLKAIMEINDYQSKAI-- 535
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRNL 613
++ +T + + +LS MK P E+ ++++++
Sbjct: 536 ----DSGVTMDNLAS--LPVREKLSRMKI-VPEDQVESYYSDLLEEIHKEYTNFIGEK 586
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 876 bits (2267), Expect = 0.0
Identities = 322/591 (54%), Positives = 425/591 (71%), Gaps = 14/591 (2%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + VSGP+V AE M G+ MYE+VRVG L+GEIIR+EGD ATIQVYEETSG+ G+P
Sbjct: 5 GKIVRVSGPLVVAEGMGGARMYEVVRVGEEGLIGEIIRIEGDKATIQVYEETSGIKPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V TG+PLSVELGPG+LGSIFDGIQRPL ++ E S ++ +GV +PAL+R+ WEF P
Sbjct: 65 VEFTGEPLSVELGPGLLGSIFDGIQRPLDELAEKS-GDFLERGVYVPALDREKKWEFTPT 123
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVV--LETEFD 195
+K+G + GD G V E ++HK+++PP GTV I G+Y VD+ + LE E D
Sbjct: 124 -VKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEIVSEGDYTVDDTIAVLEDE-D 181
Query: 196 GEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT 255
GE + TM+Q WPVR+PRP EKLP PL+TGQRV+D+ FP GGT AIPG FG GKT
Sbjct: 182 GEGVELTMMQKWPVRRPRPYKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKT 241
Query: 256 VISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVT-ESIMKRTTLVANTS 314
V L+K++++D+++YVGCGERGNEM EVL +FPEL D T +M+RT L+ANTS
Sbjct: 242 VTQHQLAKWADADIVIYVGCGERGNEMTEVLEEFPELI---DPKTGRPLMERTVLIANTS 298
Query: 315 NMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA 374
NMPVAAREASIYTGIT++EY+RDMGY+V +MADSTSRWAEALREISGRL EMP + GYPA
Sbjct: 299 NMPVAAREASIYTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPA 358
Query: 375 YLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLD 434
YL +RLA FYERAGRVK LG EGSV+I+GAVSPPGGDFS+PVT TL IV+VFW LD
Sbjct: 359 YLASRLAEFYERAGRVKTLGGE--EGSVTIIGAVSPPGGDFSEPVTQNTLRIVKVFWALD 416
Query: 435 KKLAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQL 493
+LA R+HFP+INWL SYS Y+ + ++++N P++ LR + ++LQ E +L EIV+L
Sbjct: 417 AELADRRHFPAINWLTSYSLYLDQVAPWWEENVDPDWRELRDEAMDLLQREAELQEIVRL 476
Query: 494 VGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAV 553
VG +L E D++ LEVA+L+++DFLQQN++ P D +CP K ML+ ++ FYD + A+
Sbjct: 477 VGPDALPEEDRLILEVARLIREDFLQQNAFDPVDTYCPPEKQYEMLKLILTFYDEAFKAL 536
Query: 554 ESTAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYE 604
E ++I +RD ++ + Y + + + + + K + ++L
Sbjct: 537 EKGV-PVSEILELEVRDRIARLKYIPENE-YLEKIDEIFEKLEEELEELIA 585
>gnl|CDD|238554 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A.
These ATPases couple ATP hydrolysis to the build up of a
H+ gradient, but V-type ATPases do not catalyze the
reverse reaction. The Vacuolar (V-type) ATPase is found
in the membranes of vacuoles, the golgi apparatus and in
other coated vesicles in eukaryotes. Archaea have a
protein which is similar in sequence to V-ATPases, but
functions like an F-ATPase (called A-ATPase). A similar
protein is also found in a few bacteria.
Length = 369
Score = 778 bits (2012), Expect = 0.0
Identities = 286/372 (76%), Positives = 329/372 (88%), Gaps = 3/372 (0%)
Query: 84 PLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPMNLKIGS 143
PLSVELGPG+LGSI+DGIQRPL I E+++ I+IP+GVN+PAL+RD W+F P +K+G
Sbjct: 1 PLSVELGPGLLGSIYDGIQRPLDKIAEITKGIFIPRGVNVPALDRDKKWDFKP-LVKVGD 59
Query: 144 HITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTM 203
H+TGGD G V EN+L++HK+++PP+ +GTVTYIAPAG+Y VD+V+LE EFDG+K + TM
Sbjct: 60 HVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYIAPAGDYTVDDVILEVEFDGKKEEITM 119
Query: 204 VQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK 263
VQ WPVRQPRPV EKLP N PLLTGQRVLD+LFP V GGT AIPG FGCGKTVI Q+LSK
Sbjct: 120 VQKWPVRQPRPVKEKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSK 179
Query: 264 YSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREA 323
YSNSD+++YVGCGERGNEM EVL +FPELT V G E +MKRT L+ANTSNMPVAAREA
Sbjct: 180 YSNSDIVIYVGCGERGNEMTEVLEEFPELTDPVTG--EPLMKRTVLIANTSNMPVAAREA 237
Query: 324 SIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASF 383
SIYTGIT++EYFRDMGYNV++MADSTSRWAEALREISGRL EMP + GYPAYLGARLASF
Sbjct: 238 SIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLASF 297
Query: 384 YERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHF 443
YERAGRVKCLG+P REGSV+IVGAVSPPGGDFS+PVT ATL IVQVFWGLDKKLAQR+HF
Sbjct: 298 YERAGRVKCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHF 357
Query: 444 PSINWLISYSKY 455
PSINWLISYSKY
Sbjct: 358 PSINWLISYSKY 369
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 578
Score = 769 bits (1987), Expect = 0.0
Identities = 308/584 (52%), Positives = 417/584 (71%), Gaps = 8/584 (1%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + VSGP+V A+ M G+ MYE+V+VG L+GEIIR+EGD A IQVYEETSG+ G+P
Sbjct: 2 GRIIRVSGPLVVADGMKGAQMYEVVKVGEEGLIGEIIRIEGDKAFIQVYEETSGIKPGEP 61
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG PLSVELGPG+LGSI+DG+QRPL + E + +I +GV+ P L+RD W F P
Sbjct: 62 VVGTGAPLSVELGPGLLGSIYDGVQRPLDVLKEKTGD-FIARGVDAPGLDRDKKWHFKPT 120
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGE 197
+K G + GGD G+V E +L++HK+++PP +G + IA G+Y V++ + + DG+
Sbjct: 121 -VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEIAEEGDYTVEDTIAVVDTDGD 179
Query: 198 KSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVI 257
+ M Q WPVR PRP EKLP PL+TGQR+LD+ FP GGT AIPG FG GKTV
Sbjct: 180 -EEIKMYQKWPVRIPRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVT 238
Query: 258 SQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMP 317
L+K+S++D++VY+GCGERGNEM +VL +FPEL G + +M+RT L+ANTSNMP
Sbjct: 239 QHQLAKWSDADIVVYIGCGERGNEMTDVLEEFPELKDPKTG--KPLMERTVLIANTSNMP 296
Query: 318 VAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLG 377
VAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEA+REISGRL EMP + GYPAYL
Sbjct: 297 VAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLA 356
Query: 378 ARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 437
+RLA FYERAGRVK LG +R GSV+++GAVSPPGGDFS+PVT TL IV+VFW LD L
Sbjct: 357 SRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDFSEPVTQNTLRIVKVFWALDADL 416
Query: 438 AQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVGK 496
AQR+HFP+INWL SYS Y+ + D++ +N P++ +R + ++LQ+E +L EIVQLVG
Sbjct: 417 AQRRHFPAINWLQSYSLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQEIVQLVGP 476
Query: 497 ASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVEST 556
+L E K+ LEVA+++++ FLQQN++ P D +CP K +LR ++ FYD + A+E
Sbjct: 477 DALPERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILRAIMNFYDEAMEALERG 536
Query: 557 AQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFD 600
E +I +++ + + Y+ + + + K +F
Sbjct: 537 VPVE-EILKLEVKEEIGRMKYEPDN-DILAKIDEILEKIEKEFK 578
>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional.
Length = 1017
Score = 377 bits (968), Expect = e-119
Identities = 186/354 (52%), Positives = 257/354 (72%), Gaps = 14/354 (3%)
Query: 255 TVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTS 314
TV L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTS
Sbjct: 670 TVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTS 727
Query: 315 NMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA 374
NMPVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPA
Sbjct: 728 NMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA 787
Query: 375 YLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLD 434
YL ++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 788 YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALD 847
Query: 435 KKLAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQL 493
LA+R+HFP+INWL SYS Y+ A+ D++ KN PE+ +R K E+LQ+E +L EIV++
Sbjct: 848 ADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVRI 907
Query: 494 VGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAV 553
VG +L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 908 VGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMDAI 967
Query: 554 ESTAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEA---KTRADFDQLYE 604
E +I +R+ ++ MKF+ ++ +A KT FD+L++
Sbjct: 968 SRGVPLE-EIAKLPVRE-------EIGRMKFEPDIEKIKALIDKTNEQFDELFK 1013
Score = 248 bits (635), Expect = 2e-71
Identities = 125/240 (52%), Positives = 162/240 (67%), Gaps = 3/240 (1%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+G+ G+P
Sbjct: 5 GRIIRVTGPLVIADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGLKPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V TG LSVELGPG+L SI+DGIQRPL+ I E S +I +G++ PAL RD W F P
Sbjct: 65 VEGTGSSLSVELGPGLLTSIYDGIQRPLEVIREKSGD-FIARGISAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
+K+G + GGD G V E +++ HK+++PP +G + IA G Y ++EV+ + + G
Sbjct: 123 KVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEIADEGEYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M Q WPVR RP EKLP PL+TGQRV+D+ FP GGT AIPG FG GK V
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKCV 242
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 282 bits (725), Expect = 3e-92
Identities = 91/228 (39%), Positives = 130/228 (57%), Gaps = 16/228 (7%)
Query: 227 TGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVI-VYVGCGERGNEMAEV 285
TG R +D L P G I G G GKTV+ +++ + +DV+ VYV GERG E+AE
Sbjct: 1 TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAKADVVEVYVLIGERGREVAEF 60
Query: 286 LRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMM 345
+ + E +KRT +VA TS+ P A R + YT +T++EYFRD G +V ++
Sbjct: 61 IEELLG---------EGALKRTVVVAATSDEPPAERYLAPYTALTIAEYFRDQGKDVLLL 111
Query: 346 ADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIV 405
DS +R+A ALREIS L E P GYP L + LA ERAG+V+ GS++ +
Sbjct: 112 LDSLTRFARALREISLLLGEPPGREGYPGSLFSDLARLLERAGKVE------GGGSITAL 165
Query: 406 GAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYS 453
V PGGD +DP+ T+ I L ++LA+R +P+I+ L+S S
Sbjct: 166 PTVLVPGGDITDPIPDNTISITDGQIVLSRELAERGIYPAIDILLSVS 213
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 153 bits (389), Expect = 6e-41
Identities = 103/339 (30%), Positives = 162/339 (47%), Gaps = 30/339 (8%)
Query: 195 DGEKS-KYTMVQVWPV-RQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGC 252
DG+ ++ P+ P P + P + PL TG R +D L C G I G
Sbjct: 97 DGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGV 156
Query: 253 GKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVAN 312
GK+ + +++ +++DV V GERG E +R+F E + +G KR+ LV +
Sbjct: 157 GKSTLLGMIARGASADVNVIALIGERGRE----VREFIEHHLGEEG-----RKRSVLVVS 207
Query: 313 TSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGY 372
TS+ P R + YT ++EYFRD G V +M DS +R+A ALREI E PA GY
Sbjct: 208 TSDRPSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGY 267
Query: 373 PAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWG 432
P + + L ERA GN ++ GS++ + V G D +DP+ I+
Sbjct: 268 PPSVFSSLPRLLERA------GNGEK-GSITALYTVLVEGDDMNDPIADEVRSILDGHIV 320
Query: 433 LDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQ 492
L + LA+R H+P+I+ L S S+ M + E K++ +L +++ +++
Sbjct: 321 LSRALAERNHYPAIDVLASLSRVMSQVVS------TEHRRAAGKLRRLLATYKEVELLIR 374
Query: 493 LVGKASLAESDKITLEVAKLLKD--DFLQQ--NSYSPYD 527
L SD T + + FL+Q + YSPY+
Sbjct: 375 L--GEYQPGSDPETDDAIDKIDAIRAFLRQSTDEYSPYE 411
Score = 57.3 bits (139), Expect = 1e-08
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 15 GRFGFVYAVSGPVVTAEKMSGSAMYELVRV---GYFELVGEIIRLEGDMATIQVYEETSG 71
G V VSG ++ A + G+ + EL + +L+ E++ GD A + E G
Sbjct: 4 RVRGRVTEVSGTLLKA-VLPGARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHG 62
Query: 72 VTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 111
++ G V+ TG+PLS+ +G +LG + DG RPL EL
Sbjct: 63 ISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDGKGEL 102
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 150 bits (381), Expect = 1e-40
Identities = 101/329 (30%), Positives = 153/329 (46%), Gaps = 28/329 (8%)
Query: 195 DGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGK 254
DG+ V+ +R P ++ P + L TG R +D L G I G GK
Sbjct: 23 DGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGVGK 82
Query: 255 TVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTS 314
+ + +++ + +DV V GERG E +R+F E + +G +KR+ +V TS
Sbjct: 83 STLLGMIARGTTADVNVIALIGERGRE----VREFIEKDLGEEG-----LKRSVVVVATS 133
Query: 315 NMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA 374
+ R + YT ++EYFRD G +V ++ DS +R+A A REI E P GYP
Sbjct: 134 DESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPP 193
Query: 375 YLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLD 434
+ A L ERAG +GS++ V G D ++P+ A I+ L
Sbjct: 194 SVFALLPRLLERAG-------NSDKGSITAFYTVLVEGDDLNEPIADAVRSILDGHIVLS 246
Query: 435 KKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEIL---QEEEDLSEIV 491
+ LA H+P+I+ L S S+ M A+ PE K++E+L QE EDL I
Sbjct: 247 RALAAAGHYPAIDVLKSISRLMNAV------VTPEHKEAARKLRELLSAYQEVEDLIRIG 300
Query: 492 QLVGKASLAESDKITLEVAKLLKDDFLQQ 520
K S E D+ + K+ + FL+Q
Sbjct: 301 AYK-KGSDPEVDEAIKLLPKI--EAFLKQ 326
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 152 bits (385), Expect = 2e-40
Identities = 103/328 (31%), Positives = 155/328 (47%), Gaps = 32/328 (9%)
Query: 208 PVR-QPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266
P+R P P + PL TG RV+D+ P G I G GK+ + L++ ++
Sbjct: 106 PLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD 165
Query: 267 SDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIY 326
+DV+V GERG E +R+F E D + E +KR+ +V TS+ R + Y
Sbjct: 166 ADVVVIALVGERGRE----VREFLE-----DDLGEEGLKRSVVVVATSDESPLMRRQAAY 216
Query: 327 TGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYER 386
T ++EYFRD G +V ++ DS +R+A A REI E P GY + + L ER
Sbjct: 217 TATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLER 276
Query: 387 AGRVKCLGNPDREGSVSIVG--AVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFP 444
AG P EG SI G V G D ++PV A GI+ LD+ +A+R +P
Sbjct: 277 AG-------PGAEGKGSITGIFTVLVDGDDHNEPVADAVRGILDGHIVLDRAIAERGRYP 329
Query: 445 SINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVG--KASLAES 502
+IN L S S+ + PE L +++ +L E+ ++++L K S E
Sbjct: 330 AINVLASVSRLAPRV------WSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPEL 383
Query: 503 DKITLEVAKLLKDDFLQQNSYSPYDRFC 530
D+ V K+ +FL Q P +
Sbjct: 384 DEAIRLVPKI--YEFLTQ---GPDEPTS 406
Score = 50.8 bits (122), Expect = 1e-06
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 5/113 (4%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V G + + ++ E++ GD + +E GV +G
Sbjct: 8 GLLIEVRGLSRA---VRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLGCA 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVN--IPALNR 128
V PL+V P LG + + + P+ L Q PA++R
Sbjct: 65 VFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSR 117
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 147 bits (374), Expect = 1e-38
Identities = 100/333 (30%), Positives = 151/333 (45%), Gaps = 42/333 (12%)
Query: 213 RPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVY 272
RP+ E PL TG R +D L C G I G GK+ + +++ + +DV V
Sbjct: 141 RPIEE------PLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVI 194
Query: 273 VGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLS 332
GERG E +R+F E + +G +KR+ +V TS+ R + +T T++
Sbjct: 195 ALIGERGRE----VREFIEKDLGEEG-----LKRSVVVVATSDESALMRLKAAFTATTIA 245
Query: 333 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKC 392
EYFRD G V ++ DS +R+A A REI E PA GYP + + L ERAG
Sbjct: 246 EYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAG---- 301
Query: 393 LGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISY 452
+GS++ V G D +DP+ I+ L + LA+ H+P+I+ L S
Sbjct: 302 ---NGDKGSITAFYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASI 358
Query: 453 SKYMRALDDFYDKNHPEFVPLRTKVKEIL---QEEEDLSEIVQLVGKASLAESDKITLEV 509
S+ M + E +++++L +E EDL I G A SD +
Sbjct: 359 SRVMPQIVS------EEHRKAARRLRQLLSRYEENEDLIRI----G-AYQKGSDPELDKA 407
Query: 510 AKLLK--DDFLQQNSYSPYDRFCPFYKTVGMLR 540
KL + FL+Q D F +T+ L
Sbjct: 408 IKLYPKIEQFLKQ----GIDEKSSFEETLEQLE 436
Score = 54.5 bits (132), Expect = 8e-08
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 16 RFGFVYAVSGPVVTAEKMSGSAMYELVRV----GYFELVGEIIRLEGDMATIQVYEETSG 71
R G + V+G ++ A + + EL ++ G +++ E++ + + +E G
Sbjct: 24 RRGRLTRVTGLLLEA-VGPQARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPVEG 82
Query: 72 VTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
V+ G V+ TG+PLSV +G +LG + DG+ RPL
Sbjct: 83 VSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPL 116
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 413
Score = 141 bits (358), Expect = 9e-37
Identities = 97/323 (30%), Positives = 159/323 (49%), Gaps = 32/323 (9%)
Query: 224 PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMA 283
PL TG + +D L G I G GK+ + +++ + +D+ V GERG E
Sbjct: 120 PLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGRE-- 177
Query: 284 EVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVS 343
+RDF IE D + E +KR+ +V TS+ P R + +T ++EYFRD G +V
Sbjct: 178 --VRDF----IEKD-LGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVL 230
Query: 344 MMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVS 403
+M DS +R+A A REI + E P GY + + L ER+G ++GS++
Sbjct: 231 LMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN-------SQKGSIT 283
Query: 404 IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFY 463
V G D ++P+ A GI+ L ++LA + H+P+I+ L S S+ M ++
Sbjct: 284 GFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVM---NEIV 340
Query: 464 DKNHPEFVPLRTKVKEIL---QEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQ 520
+ H E L K++E+L +E EDL I + S + D+ + K+ + FL+Q
Sbjct: 341 SEEHKE---LAGKLRELLAVYKEAEDLINIGAYK-RGSNPKIDEAIRYIEKI--NSFLKQ 394
Query: 521 NSYSPYDRFCPFYKTVGMLRNMI 543
+ F +TV +L+ +
Sbjct: 395 GIDEKFT----FEETVQLLKTLF 413
Score = 47.7 bits (114), Expect = 1e-05
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRV---GYFELVGEIIRLEGDMATIQVYEETSGVTV 74
G V V G + ++ + + EL + G ++ E++ + + + E G+
Sbjct: 1 GKVTRVIGLTIESKGPK-AKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGP 59
Query: 75 GDPVLRTGKPLSVELGPGILGSIFDGIQRPLKD 107
G V+ TG+PL++++G G+LG + DG+ RPL
Sbjct: 60 GSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDG 92
>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins [Energy metabolism, ATP-proton
motive force interconversion].
Length = 440
Score = 141 bits (357), Expect = 2e-36
Identities = 93/334 (27%), Positives = 147/334 (44%), Gaps = 23/334 (6%)
Query: 195 DGEKSKYTMVQVWPVRQPRPV-TEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCG 253
DG+ V+ + ++ P L TG R +D L G I G G
Sbjct: 116 DGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVG 175
Query: 254 KTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANT 313
K+ + +++ + +DV V GERG E +R+F E + +G +KR+ +V T
Sbjct: 176 KSTLLGMIARNTEADVNVIALIGERGRE----VREFIEHDLGEEG-----LKRSVVVVAT 226
Query: 314 SNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 373
S+ R Y ++EYFRD G +V ++ DS +R+A A REI E PA GY
Sbjct: 227 SDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYT 286
Query: 374 AYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGL 433
+ + L ERAG +GS++ V G D ++P+ + GI+ L
Sbjct: 287 PSVFSTLPRLLERAGASG-------KGSITAFYTVLVEGDDMNEPIADSVRGILDGHIVL 339
Query: 434 DKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQL 493
+ LAQR H+P+I+ L S S+ M A+ + H ++ ++ EDL I
Sbjct: 340 SRALAQRGHYPAIDVLASISRLMTAI---VSEEHRRAARKFRELLSKYKDNEDLIRI-GA 395
Query: 494 VGKASLAESDKITLEVAKLLKDDFLQQNSYSPYD 527
+ S E D + KL + FL+Q +
Sbjct: 396 YQRGSDRELDFAIAKYPKL--ERFLKQGINEKVN 427
Score = 55.1 bits (133), Expect = 7e-08
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 2 STALGKMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRV----GYFELVGEIIRLE 57
L + D R G V V G ++ A +++ +L + LV E++
Sbjct: 9 YNRLCQEMDLRLVKRVGRVTKVKGLLIEA-VGPQASVGDLCLIERRGSEGRLVAEVVGFN 67
Query: 58 GDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
G+ + YEE GV G VL TG+ LS+++G G+LG + DG+ +P+
Sbjct: 68 GEFVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGLLGRVLDGLGKPI 115
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated.
Length = 440
Score = 137 bits (346), Expect = 5e-35
Identities = 95/330 (28%), Positives = 144/330 (43%), Gaps = 31/330 (9%)
Query: 212 PRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIV 271
P P+T + P L TG R +D + C G I A G GK+ + L S +DV+V
Sbjct: 135 PSPLTRQ-PIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMV 193
Query: 272 YVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITL 331
GERG E +R+F E + T RT +V TS+ P R + T T+
Sbjct: 194 LALIGERGRE----VREFLEQVL-----TPEARARTVVVVATSDRPALERLKGLSTATTI 244
Query: 332 SEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVK 391
+EYFRD G V +MADS +R+A A REI E PA +P + A L ER G
Sbjct: 245 AEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTG--- 301
Query: 392 CLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLIS 451
GS++ V G D ++PV ++ L ++LA H+P+I+ S
Sbjct: 302 ----NSDRGSITAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAAS 357
Query: 452 YSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAK 511
S+ M + + + K++ +L +++ +V+ VG+ E D E +
Sbjct: 358 VSRIMPQIVS------AGQLAMAQKLRRMLACYQEIELLVR-VGEYQAGE-DLQADEALQ 409
Query: 512 LLKD--DFLQQNSYSPYDRFCPFYKTVGML 539
FLQQ+ + T+ L
Sbjct: 410 RYPAICAFLQQD----HSETAHLETTLEHL 435
Score = 55.2 bits (133), Expect = 6e-08
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 17 FGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGD 76
G + + GP + + G A EL R+ ++ E++ +E +MA + + + G+ G
Sbjct: 30 RGPIVEI-GPTLLRASLPGVAQGELCRIEPQGMLAEVVSIEQEMALLSPFASSDGLRCGQ 88
Query: 77 PVLRTGKPLSVELGPGILGSIFDGIQRPLKD 107
V G V++G + G I DG+ P+
Sbjct: 89 WVTPLGHMHQVQVGADLAGRILDGLGAPIDG 119
>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated.
Length = 428
Score = 137 bits (346), Expect = 5e-35
Identities = 105/388 (27%), Positives = 159/388 (40%), Gaps = 56/388 (14%)
Query: 168 PKAKGTVTYIAPAGNYKVDEVVLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLT 227
G V + P G + E G S+ ++ V P E+ P PL+T
Sbjct: 86 EALLGAV--LDPTGK--IVERFDAPPTVGPISEERVIDV----APPSYAERRPIREPLIT 137
Query: 228 GQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLR 287
G R +D L C +G I + GCGKT + L ++S +DV V GERG E
Sbjct: 138 GVRAIDGLLTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGRE------ 191
Query: 288 DFPELTIEVDGVTESI--MK------RTTLVANTSNMPVAAREASIYTGITLSEYFRDMG 339
VTE + ++ + LV TS+ R + T++EYFRD G
Sbjct: 192 -----------VTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQG 240
Query: 340 YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDRE 399
V + DS +R+A ALR+++ E+PA GYPA + L ER G
Sbjct: 241 KRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATL-------A 293
Query: 400 GSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRAL 459
GS++ V + DP+ I+ L +KLA + H+P+I+ L S S R
Sbjct: 294 GSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVS---RVF 350
Query: 460 DDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASL---AESDKITLEVAKLLKDD 516
D H + L +++L E+L + L G+ A++D+ + L +
Sbjct: 351 GQVTDPKHRQ---LAAAFRKLLTRLEELQLFIDL-GEYRRGENADNDRAMDKRPAL--EA 404
Query: 517 FLQQNSYSPYDRFCPFYKTVGMLRNMIA 544
FL+Q F T+ L A
Sbjct: 405 FLKQ----DVAEKSSFSDTLERLNEFAA 428
Score = 34.2 bits (79), Expect = 0.20
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 81 TGKPLSVELGPGILGSIFD 99
TGKPLSV +G +LG++ D
Sbjct: 76 TGKPLSVWVGEALLGAVLD 94
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 135 bits (341), Expect = 2e-34
Identities = 100/342 (29%), Positives = 161/342 (47%), Gaps = 33/342 (9%)
Query: 207 WPVRQ--PRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKY 264
+PV P P++ +L PL G RV+D L C G I A G GK+ + +L +
Sbjct: 127 YPVYADAPAPMSRRL-IETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRS 185
Query: 265 SNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREAS 324
+ DV V GERG E +R+F IE D + E +++ LV TS+ P R +
Sbjct: 186 AEVDVTVLALIGERGRE----VREF----IESD-LGEEGLRKAVLVVATSDRPSMERAKA 236
Query: 325 IYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFY 384
+ +++EYFRD G V ++ DS +R+A A REI E P GYP + A L
Sbjct: 237 GFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLM 296
Query: 385 ERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFP 444
ERAG +GS++ + V G D ++PV T I+ L +KLA H+P
Sbjct: 297 ERAG-------QSDKGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYP 349
Query: 445 SINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQL--VGKASLAES 502
+I+ L S S+ M + E +++E+L + E++ ++Q+ K E+
Sbjct: 350 AIDVLRSASRVMNQIVS------KEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQDKEA 403
Query: 503 DKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544
D+ + + FL+Q ++ F +T+ +L +
Sbjct: 404 DQAIERIGAI--RGFLRQGTHEL----SHFNETLNLLETLTQ 439
Score = 36.7 bits (85), Expect = 0.031
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 47 FELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLK 106
L E+I A + E G++ V TG V +G +LG + DG+ +P
Sbjct: 57 LSLQAEVIGFAQHQALLTPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFD 116
Query: 107 DINELSQSIYIP 118
+ + + P
Sbjct: 117 GGHPPEPAAWYP 128
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 127 bits (322), Expect = 8e-32
Identities = 90/300 (30%), Positives = 137/300 (45%), Gaps = 25/300 (8%)
Query: 194 FDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCG 253
DG + V + P ++ P P+ G R +DSL G I G G
Sbjct: 111 LDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVG 170
Query: 254 KTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANT 313
K+ + +++ +++D+ V GERG E +R+F E + +G +KR+ +V T
Sbjct: 171 KSTLMGMIARNTSADLNVIALIGERGRE----VREFIERDLGPEG-----LKRSIVVVAT 221
Query: 314 SNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 373
S+ P R YT ++EYFRD G NV +M DS +R A A REI + E P GY
Sbjct: 222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYT 281
Query: 374 AYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGL 433
+ A L ER G + GS++ V G D ++P+ GI+ + L
Sbjct: 282 PSVFAILPKLLERTG-------TNASGSITAFYTVLVDGDDMNEPIADTVRGILDGHFVL 334
Query: 434 DKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEIL---QEEEDLSEI 490
D++LA + +P+IN L S S+ M + H E + +E+L Q EDL I
Sbjct: 335 DRQLANKGQYPAINVLKSVSRVM---NHIVSPEHKEAA---NRFRELLSTYQNSEDLINI 388
Score = 37.0 bits (86), Expect = 0.028
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 66 YEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
Y E + + G V TGKPL V++G G++G + D + PL
Sbjct: 72 YTEVAEIAPGCLVEATGKPLEVKVGSGLIGQVLDALGEPL 111
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 126 bits (320), Expect = 1e-31
Identities = 99/320 (30%), Positives = 149/320 (46%), Gaps = 48/320 (15%)
Query: 213 RPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVY 272
P+ E PL G R ++ L G I G GK+ + +++Y+ +DV+V
Sbjct: 115 APIDE------PLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVV- 167
Query: 273 VG-CGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITL 331
VG GERG E +++F E + +G + R+ +VA T++ R + + +
Sbjct: 168 VGLIGERGRE----VKEFIEDILGEEG-----LARSVVVAATADESPLMRLRAAFYATAI 218
Query: 332 SEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVK 391
+EYFRD G +V ++ DS +R+A A REI+ + E PA GYP + A+L ERAG
Sbjct: 219 AEYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAG--- 275
Query: 392 CLGNPDREGSVSIVG--AVSPPGGDFSDPVTSATLGIVQVFWG---LDKKLAQRKHFPSI 446
EG SI V G D DP+ A I+ G L ++LA++ H+P+I
Sbjct: 276 ----NGEEGKGSITAFYTVLVEGDDQQDPIADAARAILD---GHIVLSRELAEQGHYPAI 328
Query: 447 NWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEIL---QEEEDLSEIVQLVGKASLAESD 503
+ L S S+ M + PE + K++L QE DL I G A A SD
Sbjct: 329 DILASISRVMPDVVS------PEHRQAARRFKQLLSRYQENRDLISI----G-AYQAGSD 377
Query: 504 KITLEVAKLLK--DDFLQQN 521
+ L + FLQQ
Sbjct: 378 PELDQAIALYPRIEAFLQQG 397
Score = 49.4 bits (119), Expect = 4e-06
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 51 GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINE 110
E++ GD + E+ G+ G V PL + +G +LG + DG+ RPL
Sbjct: 36 AEVVGFRGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGP 95
Query: 111 LSQSIYIP-KGVNIPALNR 128
L +P I L R
Sbjct: 96 LDAGERVPLYAPPINPLKR 114
>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 126 bits (319), Expect = 3e-31
Identities = 97/302 (32%), Positives = 146/302 (48%), Gaps = 28/302 (9%)
Query: 224 PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMA 283
PL G R L++ C G I G GK+V+ L++ +++DV V GERG E+
Sbjct: 141 PLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADVSVIGLIGERGREVQ 200
Query: 284 EVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVS 343
E L+D +L E G + R+ +V TS+ P R + Y + ++EYFRD G +V
Sbjct: 201 EFLQD--DLGPE--G-----LARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVL 251
Query: 344 MMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVS 403
+ DS +R+A A REI E P GY + A L ERAG P G +
Sbjct: 252 CLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAG-------PGPIGEGT 304
Query: 404 IVG--AVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDD 461
I G V G D ++PV A GI+ +++ +A+R +P+IN L S S+ M +D
Sbjct: 305 ITGLFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCND 364
Query: 462 FYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKD--DFLQ 519
PE PL + ++++ D+ E+++L A A SD E +L FL+
Sbjct: 365 ------PEENPLVRRARQLMATYADMEELIRL--GAYRAGSDPEVDEAIRLNPALEAFLR 416
Query: 520 QN 521
Q
Sbjct: 417 QG 418
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 461
Score = 126 bits (318), Expect = 4e-31
Identities = 95/323 (29%), Positives = 153/323 (47%), Gaps = 33/323 (10%)
Query: 207 WPVRQPRPVTEKLPANYPLL-TGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK-- 263
WP+ + P E+ +L TG +V+D L P GG + G G GKTV+ Q L
Sbjct: 108 WPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNI 167
Query: 264 -YSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322
+ V+ G GER E ++ + E ++ +T LV N P AR
Sbjct: 168 AKEHGGYSVFAGVGERTREGNDLYHEMKE---------SGVIDKTALVYGQMNEPPGARM 218
Query: 323 ASIYTGITLSEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLA 381
TG+T++EYFRD G +V + D+ R+ +A E+S L MP+ GY L +
Sbjct: 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 278
Query: 382 SFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 441
ER K GS++ V AV P D +DP + T + L +K+A+
Sbjct: 279 ELQERITSTK-------TGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELG 331
Query: 442 HFPSINWLISYSKYMRAL---DDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKAS 498
+P+++ L S S+ + ++ YD + V++ILQ ++L +I+ ++G
Sbjct: 332 IYPAVDPLDSTSRLLDPSVVGEEHYD--------VARGVQQILQRYKELQDIIAILGMDE 383
Query: 499 LAESDKITLEVAKLLKDDFLQQN 521
L+E DK+T+E A+ ++ FL Q
Sbjct: 384 LSEEDKLTVERARRIQ-RFLSQP 405
Score = 37.8 bits (88), Expect = 0.015
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 18 GFVYAVSGPVVTAEKMSGS--AMYELVRV---GYFELVGEIIRLEGD--MATIQVYEETS 70
G V V GPVV E G +Y ++V EL E+ + GD + TI + T
Sbjct: 3 GKVVQVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAM-GSTD 61
Query: 71 GVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPAL 126
G+ G V+ TG P+SV +G LG IF+ + P+ + + P P+
Sbjct: 62 GLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSF 117
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 121 bits (305), Expect = 1e-29
Identities = 79/282 (28%), Positives = 134/282 (47%), Gaps = 22/282 (7%)
Query: 212 PRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIV 271
P P + P PL+TG R +DS+ C G I A G GK+ + L ++D V
Sbjct: 126 PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV 185
Query: 272 YVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITL 331
V GERG E +R+F + T+ +E KR +V TS+ P R +++ T+
Sbjct: 186 LVLIGERGRE----VREFIDFTL-----SEETRKRCVIVVATSDRPALERVRALFVATTI 236
Query: 332 SEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVK 391
+E+FRD G V ++ADS +R+A A REI+ E YP + + L ER G
Sbjct: 237 AEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG--- 293
Query: 392 CLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLIS 451
+G +GS++ V G D ++P+ ++ L ++LA+R H+P+I+ L +
Sbjct: 294 -MGE---KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT 349
Query: 452 YSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQL 493
S+ + E L ++ L +++ ++++
Sbjct: 350 LSRVFPVV------TSHEHRQLAAILRRCLALYQEVELLIRI 385
Score = 45.3 bits (107), Expect = 6e-05
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 16 RFGFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVG 75
R+G + VS ++ A + G M EL + E + E++ + G A + + T G+ G
Sbjct: 21 RWGRIQDVSATLLNA-WLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCG 79
Query: 76 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKD 107
V+ + V +G +LG + DG RPL
Sbjct: 80 QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG 111
>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy
production and conversion].
Length = 468
Score = 117 bits (295), Expect = 4e-28
Identities = 101/334 (30%), Positives = 156/334 (46%), Gaps = 55/334 (16%)
Query: 207 WPVRQPRPVTEKLPANYPLL-TGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQAL---- 261
WP+ + P E+L +L TG +V+D L P GG + G G GKTV+ Q L
Sbjct: 112 WPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNI 171
Query: 262 SKYSNSDVIVYVGCGER---GNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPV 318
+K + V+ G GER GN++ +++ L +T LV N P
Sbjct: 172 AK-EHGGYSVFAGVGERTREGNDLYHEMKESGVL------------DKTALVFGQMNEPP 218
Query: 319 AAREASIYTGITLSEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLG 377
AR TG+T++EYFRD G +V + D+ R+ +A E+S L MP+ GY L
Sbjct: 219 GARMRVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLA 278
Query: 378 ARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLG-----IVQVFWG 432
+ ER K +GS++ V AV P D +DP + T V
Sbjct: 279 TEMGQLQERITSTK-------KGSITSVQAVYVPADDLTDPAPATTFAHLDATTV----- 326
Query: 433 LDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLR-----TKVKEILQEEEDL 487
L +++A +P+++ L S S RALD P+ V +V+ ILQ ++L
Sbjct: 327 LSRQIAALGIYPAVDPLDSTS---RALD-------PKIVGEEHYEVAREVQSILQRYKEL 376
Query: 488 SEIVQLVGKASLAESDKITLEVAKLLKDDFLQQN 521
+I+ ++G L+E DK+T+ A+ ++ FL Q
Sbjct: 377 QDIIAILGMDELSEEDKLTVARARKIQ-RFLSQP 409
Score = 47.2 bits (113), Expect = 2e-05
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 18 GFVYAVSGPVVTAEKMSGSAM---YELVRV---GYFELVGEIIRLEGD--MATIQVYEET 69
G V V GPVV E + Y + V LV E+ + GD + TI T
Sbjct: 4 GKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTI-AMGST 62
Query: 70 SGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELS 112
G+ G V+ TGKP+SV +G G LG IF+ + P+ + +
Sbjct: 63 DGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPIK 105
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 116 bits (292), Expect = 7e-28
Identities = 92/344 (26%), Positives = 157/344 (45%), Gaps = 36/344 (10%)
Query: 205 QVWPVRQ--PRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALS 262
+ +P+ + P P+ + L TG R +D + G I G GK+ + ++
Sbjct: 127 ETYPIFRAPPDPL-HRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIA 185
Query: 263 KYSN-SDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321
+ + +DV V GERG E +R+F E + +G MKR+ +V +TS+ R
Sbjct: 186 RNAEEADVNVIALIGERGRE----VREFIEGDLGEEG-----MKRSVIVVSTSDQSSQLR 236
Query: 322 EASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLA 381
+ Y G ++EYFRD G V +M DS +R+A ALRE+ E PA +GY + + L
Sbjct: 237 LNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLP 296
Query: 382 SFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 441
ER+G +G+++ V G D ++PV I+ L LAQ
Sbjct: 297 KLLERSGA-------SDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAY 349
Query: 442 HFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVG---KAS 498
H+P+I+ L S S+ + A+ + + K +E+L + + +E++ +G + S
Sbjct: 350 HYPAIDVLASISRLLTAI---VPEEQRRII---GKAREVLAKYKA-NEMLIRIGEYRRGS 402
Query: 499 LAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNM 542
E D + KL + FL+Q+ + + LR +
Sbjct: 403 DREVDFAIDHIDKLNR--FLKQD----IHEKTNYEEAAQQLRAI 440
Score = 40.3 bits (94), Expect = 0.003
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 43 RVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQ 102
R G LV E++ + + E +GV+ V+ TG PL + G G+LG + +G+
Sbjct: 52 RHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLG 111
Query: 103 RPL 105
P+
Sbjct: 112 EPI 114
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.
Length = 461
Score = 116 bits (292), Expect = 1e-27
Identities = 98/331 (29%), Positives = 151/331 (45%), Gaps = 49/331 (14%)
Query: 207 WPV-RQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQ----AL 261
P+ P+ E+ + L TG +V+D L P GG T + G G GKTV+ +
Sbjct: 108 RPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNI 167
Query: 262 SKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAR 321
SK +S V+ G GER E E+ + E ++ +T +V N P AR
Sbjct: 168 SK-QHSGSSVFAGVGERSREGHELYHEMKE---------SGVLDKTVMVYGQMNEPPGAR 217
Query: 322 EASIYTGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARL 380
+ TG+T++EY RD +V + D+ R+ +A E+SG L MP+ GY L + +
Sbjct: 218 MRVVLTGLTIAEYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEV 277
Query: 381 ASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLG-----IVQVFWGLDK 435
A ER K GS++ + AV P D +DP A +V L +
Sbjct: 278 AELQERIASTK-------NGSITSIQAVYVPADDLTDPAAVAIFSHLDSTVV-----LSR 325
Query: 436 KLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLR-----TKVKEILQEEEDLSEI 490
A + +P+I+ L S S LD P V R +VK ILQ ++L ++
Sbjct: 326 AQAAKGIYPAIDPLASSS---NLLD-------PLVVGERHYDAAIEVKRILQRYKELEDV 375
Query: 491 VQLVGKASLAESDKITLEVAKLLKDDFLQQN 521
+ ++G L+ DKI ++ A+ L+ FL Q
Sbjct: 376 IAILGIDELSAEDKIIVKRARQLQ-RFLTQP 405
Score = 48.3 bits (116), Expect = 7e-06
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 18 GFVYAVSGPVVTAE--KMSGSAMYELVRVG-----YFELVGEIIRLEGDMATIQVYEETS 70
G + + G VV E + + + + + V V + + E + I + TS
Sbjct: 4 GRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLD-ETTVRAIALGS-TS 61
Query: 71 GVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALN 127
G+ GD V TG P+ V +G +LG + D + PL L P IP L
Sbjct: 62 GLARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLA 118
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 114 bits (287), Expect = 3e-27
Identities = 93/342 (27%), Positives = 150/342 (43%), Gaps = 45/342 (13%)
Query: 212 PRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIV 271
P P++ ++ PL TG R++D L G I G GK+ + ++ + DV V
Sbjct: 135 PDPMSRRM-VEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNV 193
Query: 272 YVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITL 331
GERG E +R+F EL + DG M R+ +V TS+ R + Y +
Sbjct: 194 IALIGERGRE----VREFIELILGEDG-----MARSVVVCATSDRSSIERAKAAYVATAI 244
Query: 332 SEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVK 391
+EYFRD G V +M DS +R+A A REI E PA G+P + A L ERAG
Sbjct: 245 AEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGM-- 302
Query: 392 CLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLIS 451
GS++ + V SDP+ GI+ L +++A R +P+I+ L S
Sbjct: 303 -----GETGSITALYTVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGS 357
Query: 452 YSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQL---------VGKASLAES 502
S+ M + + H + +++++L + ++ ++Q+ V ++A+
Sbjct: 358 LSRVMPQV---VPREHVQAA---GRLRQLLAKHREVETLLQVGEYRAGSDPVADEAIAKI 411
Query: 503 DKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544
D I DFL Q D + T+ L +
Sbjct: 412 DAI---------RDFLSQ----RTDEYSDPDATLAALAELSG 440
Score = 42.4 bits (100), Expect = 6e-04
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 15 GRFGFVYAVSGPVVTAEKMSG--SAMYEL--VRVGYFELV--GEIIRLEGDMATIQVYEE 68
R G V V G ++ ++SG + EL +R L+ E++ D+A + + E
Sbjct: 23 RRTGKVVEVIGTLL---RVSGLDVTLGELCELRQRDGTLLQRAEVVGFSRDVALLSPFGE 79
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIP 124
G++ G V+ G+PLSV +GP +LG + DG+ P+ L +P P
Sbjct: 80 LGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPP 135
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 108 bits (271), Expect = 4e-25
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 29/281 (10%)
Query: 213 RPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVY 272
RP+TE PL G R ++++ G + G GK+V+ +++ + +DVIV
Sbjct: 140 RPITE------PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADVIVV 193
Query: 273 VGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLS 332
GERG E+ E F E + +G R+ +VA ++ R T T++
Sbjct: 194 GLVGERGREVKE----FIEEILGEEG-----RARSVVVAAPADTSPLMRLKGCETATTIA 244
Query: 333 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKC 392
EYFRD G NV ++ DS +R+A+A REI+ + E PA GYP + A+L + ERAG
Sbjct: 245 EYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGN--- 301
Query: 393 LGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISY 452
G P +GS++ V G D DP+ A+ I+ L ++LA H+P+I+ S
Sbjct: 302 -GGPG-QGSITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASI 359
Query: 453 SKYMRALDDFYDKNHPEFVPLRTKVKEIL---QEEEDLSEI 490
S+ M + E + +VK++ Q+ DL I
Sbjct: 360 SRVMPMVIS------EEHLEAMRRVKQVYSLYQQNRDLISI 394
Score = 35.1 bits (81), Expect = 0.096
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 48 ELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKD 107
EL E++ +GD+ + EE GV G V G+ + +G +LG + DG+ PL
Sbjct: 58 ELEAEVVGFDGDLLYLMPIEELRGVLPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDG 117
Query: 108 INELSQSIYIPKGVNIPALN 127
+ + + + P +N
Sbjct: 118 LGPIYTDQRASR--HSPPIN 135
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 106 bits (267), Expect = 1e-24
Identities = 93/333 (27%), Positives = 149/333 (44%), Gaps = 46/333 (13%)
Query: 212 PRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV-----ISQALSKYSN 266
P +T + + TG + +D L P GG + G G GKTV I + ++
Sbjct: 109 PPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQG 168
Query: 267 SDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIY 326
V ++ G GER E E+ R+ E ++ T +V N P AR +
Sbjct: 169 --VSIFCGIGERCREGEELYREMKE---------AGVLDNTVMVFGQMNEPPGARFRVGH 217
Query: 327 TGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYE 385
T +T++EYFRD +V ++ D+ R+ +A E+SG L +MP+ GY LG LA E
Sbjct: 218 TALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEE 277
Query: 386 RAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPS 445
R +G+++ + AV P DF+DP T + L +K A +P+
Sbjct: 278 RIATT-------SDGAITSIQAVYVPADDFTDPAAVHTFSHLSASLVLSRKRASEGLYPA 330
Query: 446 INWLISYSKYMRAL---DDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAES 502
I+ L S SK + YD L +V++ L + E+L +I+ ++G L+
Sbjct: 331 IDPLQSTSKMATPGIVGERHYD--------LAREVRQTLAQYEELKDIIAMLGLEQLSRE 382
Query: 503 DKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKT 535
D+ + A+ L + FL Q PF+ T
Sbjct: 383 DRRVVNRARRL-ERFLTQ----------PFFTT 404
Score = 39.8 bits (93), Expect = 0.004
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 18 GFVYAVSGPVVTAE-KMSGSAMYELVRVGY-FELVGEII-RLEGDMATIQVYEETSGVTV 74
G V AV G +V A++ ++R G E+V E++ +L+ T G+
Sbjct: 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGREGEVVVEVLSQLDAHHVRGIALTPTQGLAR 60
Query: 75 GDPVLRTGKPLSVELGPGILGSIFDGIQRPLKD 107
G PV +G PL +G L +FD +
Sbjct: 61 GMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDR 93
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 106 bits (267), Expect = 1e-24
Identities = 81/273 (29%), Positives = 137/273 (50%), Gaps = 27/273 (9%)
Query: 220 PANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERG 279
P + PL G R ++ L G + G GK+V+ +++++ +D+IV GERG
Sbjct: 147 PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERG 206
Query: 280 NEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSN-MPVAAREASIYTGITLSEYFRDM 338
E+ E + + E +KR+ +VA+ ++ P+ A++Y ++EYFRD
Sbjct: 207 REVKEFIEHI---------LGEEGLKRSVVVASPADDAPLMRLRAAMYC-TRIAEYFRDK 256
Query: 339 GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDR 398
G NV ++ DS +R+A+A REI+ + E PA GYP + A+L ERA GN +
Sbjct: 257 GKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERA------GNAEP 310
Query: 399 -EGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMR 457
GS++ V G D DP+ + G++ L ++LA+ H+P+I+ S S+ M
Sbjct: 311 GGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMP 370
Query: 458 ALDDFYDKNHPEFVPLRTKVKEIL---QEEEDL 487
+ D PE + + K++ Q+ DL
Sbjct: 371 QVVD------PEHLRRAQRFKQLWSRYQQSRDL 397
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 106 bits (266), Expect = 2e-24
Identities = 79/338 (23%), Positives = 148/338 (43%), Gaps = 31/338 (9%)
Query: 211 QPRPVT--EKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268
Q + ++ + PL G ++ L G + G GK+V+ +++Y+ +D
Sbjct: 123 QLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD 182
Query: 269 VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTG 328
V+V GERG E +++F E +++ G+ +S++ + A P+ +A+
Sbjct: 183 VVVVGLIGERGRE----VKEFIEHSLQAAGMAKSVV----VAAPADESPLMRIKATELCH 234
Query: 329 ITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAG 388
++ Y+RD G++V ++ DS +R+A A REI+ L E PA GYP + + E A
Sbjct: 235 -AIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESA- 292
Query: 389 RVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINW 448
GN G+++ + V G D DP+ ++ L +KLA+ H+P+I+
Sbjct: 293 -----GNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDI 347
Query: 449 LISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLE 508
S S+ M + + + +K+ + + ++ L G +A +D + +
Sbjct: 348 SQSISRCMSQVIG------SQQAKAASLLKQCYADYMAIKPLIPLGG--YVAGADPMADQ 399
Query: 509 VAKLLK--DDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544
FL+Q P F +V L M
Sbjct: 400 AVHYYPAITQFLRQEVGHP----ALFSASVEQLTGMFP 433
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 104 bits (262), Expect = 6e-24
Identities = 76/233 (32%), Positives = 115/233 (49%), Gaps = 19/233 (8%)
Query: 224 PLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMA 283
L TG RV+D P G I G GK+ + L++ D +V GERG E
Sbjct: 148 GLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGRE-- 205
Query: 284 EVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVS 343
+R+F E D + +++ K +VA + P+ R A + T ++EYFRD G NV
Sbjct: 206 --VREFLE-----DTLADNLKKAVAVVATSDESPMMRRLAPL-TATAIAEYFRDRGENVL 257
Query: 344 MMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVS 403
++ DS +R+A A RE++ E P GYP + + L ERAG P EG S
Sbjct: 258 LIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAG-------PGAEGGGS 310
Query: 404 IVG--AVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSK 454
I G +V G D +DPV + G + LD+ +A++ +P+++ L S S+
Sbjct: 311 ITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISR 363
Score = 34.6 bits (80), Expect = 0.14
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 1 MSTALGKMADE-DREGRFGFVYAVSGPV--VTAEKMSGSAMYELVRVGYF--------EL 49
AL ++A +R + + G V VTA + VR+G F
Sbjct: 3 PDNALARLAALVERYAAPEPLVRIGGTVSEVTASHYRVRGLSRFVRLGDFVAIRADGGTH 62
Query: 50 VGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
+GE++R++ D T++ +E + +GD V R G PL + P G + + + P+
Sbjct: 63 LGEVVRVDPDGVTVKPFEPRIEIGLGDAVFRKG-PLRIRPDPSWKGRVINALGEPI 117
>gnl|CDD|215848 pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta chain, C terminal
domain.
Length = 110
Score = 95.4 bits (238), Expect = 1e-23
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 35/143 (24%)
Query: 473 LRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPF 532
+ ++K L + +L IVQLVG+ +L+E DK+TLE A+ +++ FL+QN YSP P
Sbjct: 3 VAGQLKLELAQYRELQAIVQLVGEDALSEEDKLTLERARRIEE-FLKQNQYSPE----PV 57
Query: 533 YKTVGMLRNMIAFYDMSRHAVESTAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGE 592
K + I + Y L KF D +D
Sbjct: 58 EKQYVPVEETID------------------------------LFYALLRGKFDDLPEDAL 87
Query: 593 AKTRADFDQLYEDIQQAFRNLED 615
+ Y+D+++ F+ L+
Sbjct: 88 YRIGTIDLAKYKDLEEKFKKLKK 110
>gnl|CDD|238553 cd01133, F1-ATPase_beta, F1 ATP synthase beta subunit,
nucleotide-binding domain. The F-ATPase is found in
bacterial plasma membranes, mitochondrial inner
membranes and in chloroplast thylakoid membranes. It has
also been found in the archaea Methanosarcina barkeri.
It uses a proton gradient to drive ATP synthesis and
hydrolyzes ATP to build the proton gradient. The
extrinisic membrane domain, F1, is composed of alpha,
beta, gamma, delta and epsilon subunits with a
stoichiometry of 3:3:1:1:1. The beta subunit of ATP
synthase is catalytic.
Length = 274
Score = 98.5 bits (246), Expect = 6e-23
Identities = 73/255 (28%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 207 WPVRQPRPVTEKLPANYPLL-TGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQAL---S 262
WP+ + P + +L TG +V+D L P GG + G G GKTV+ L
Sbjct: 34 WPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNI 93
Query: 263 KYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322
++ V+ G GER E ++ + E ++ +T LV N P AR
Sbjct: 94 AKAHGGYSVFAGVGERTREGNDLYHEMKES---------GVLSKTALVYGQMNEPPGARA 144
Query: 323 ASIYTGITLSEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLA 381
TG+T++EYFRD G +V + D+ R+ +A E+S L MP+ GY L +
Sbjct: 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 204
Query: 382 SFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 441
+ ER K +GS++ V AV P D +DP + T + L + +A+
Sbjct: 205 ALQERITSTK-------KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRAIAELG 257
Query: 442 HFPSINWLISYSKYM 456
+P+++ L S S+ +
Sbjct: 258 IYPAVDPLDSTSRIL 272
Score = 30.3 bits (69), Expect = 2.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 84 PLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPAL 126
P+SV +GP LG IF+ + P+ + + P P
Sbjct: 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEF 43
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 98.3 bits (245), Expect = 8e-22
Identities = 92/321 (28%), Positives = 151/321 (47%), Gaps = 32/321 (9%)
Query: 217 EKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCG 276
++ P + L TG R +++L G + G GK+V+ +++Y+ +DVIV G
Sbjct: 151 QRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIG 210
Query: 277 ERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFR 336
ERG E ++DF E + +G S++ + A P+ + + Y ++E FR
Sbjct: 211 ERGRE----VKDFIENILGAEGRARSVV----IAAPADVSPLLRMQGAAY-ATRIAEDFR 261
Query: 337 DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNP 396
D G +V ++ DS +R+A A REI+ + E PA GYP + A+L + ERAG
Sbjct: 262 DRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAG-----NGI 316
Query: 397 DREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYM 456
GS++ V G D DP+ + I+ L ++LA+ H+P+I+ S S+ M
Sbjct: 317 SGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAM 376
Query: 457 RALDDFYDKNHPEFVPLRTKVKEIL---QEEEDLSEIVQLVGKASLAESDKITLEVAKLL 513
AL D+ H V + K++L Q DL VG A SD + + L
Sbjct: 377 TAL---IDEQHYARV---RQFKQLLSSFQRNRDLVS----VG-AYAKGSDPMLDKAIALW 425
Query: 514 K--DDFLQQNSY--SPYDRFC 530
+ FLQQ + + ++
Sbjct: 426 PQLEAFLQQGIFERADWEDSL 446
>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 458
Score = 96.0 bits (239), Expect = 5e-21
Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 21/225 (9%)
Query: 304 MKRTTLVANTSNMPVAAREASIYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGR 362
++R + N ++ P R + +T +EY + +V ++ + + EALREIS
Sbjct: 201 LERAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREISAA 260
Query: 363 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSA 422
E+P GYP Y+ LA+ YERAGRVK ++GS++ + ++ PG D + P+
Sbjct: 261 REEVPGRRGYPGYMYTDLATIYERAGRVK-----GKKGSITQMPILTMPGDDITHPIPDL 315
Query: 423 TLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYM-------RALDDFYDKNHPEFVPLRT 475
T I + L ++L ++ +P IN L S S+ M + +D H + +
Sbjct: 316 TGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTRED-----HKD---VSD 367
Query: 476 KVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQ 520
++ E DL +V +VG+ +L+E D+ L+ A L + F++Q
Sbjct: 368 QLYAAYAEGRDLRGLVAIVGEEALSERDRKYLKFADLFERKFVRQ 412
Score = 49.0 bits (117), Expect = 5e-06
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 23 VSGPVVTAEKMSGSAMYELVRVGYFEL------VGEIIRLEGDMATIQVYEETSGVTVGD 76
++GP+V E + A E+V + E G+++ +A +QV+E T+G+
Sbjct: 8 IAGPLVFVEGVEPVAYNEIVEI---ETPDGEKRRGQVLDSSEGIAVVQVFEGTTGLDPTG 64
Query: 77 PVLR-TGKPLSVELGPGILGSIFDGIQRPL 105
+R TG+ L + + +LG I +G P+
Sbjct: 65 TKVRFTGETLKLPVSEDMLGRILNGSGEPI 94
>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 95.7 bits (239), Expect = 7e-21
Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 27/231 (11%)
Query: 304 MKRTTLVANTSNMPVAAREASIYTGITLSEYFR-DMGYNV-SMMADSTSRWAEALREISG 361
++R+ + N ++ P R + +T +EY + G +V ++ D T+ + EALREIS
Sbjct: 203 LERSVVFLNLADDPAIERILTPRMALTAAEYLAFEKGMHVLVILTDMTN-YCEALREISA 261
Query: 362 RLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTS 421
E+P GYP Y+ LA+ YERAGR+K ++GS++ + ++ P D + P+
Sbjct: 262 AREEVPGRRGYPGYMYTDLATIYERAGRIK-----GKKGSITQIPILTMPDDDITHPIPD 316
Query: 422 ATLGIV--QVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKE 479
T I Q+ L ++L ++ +P I+ L S S+ M D + R K+
Sbjct: 317 LTGYITEGQIV--LSRELHRKGIYPPIDVLPSLSRLM---KDGIGEGKT-----REDHKD 366
Query: 480 ILQ-------EEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSY 523
+ +DL E+ +VG+ +L+E D+ L+ A + +F+ Q
Sbjct: 367 VANQLYAAYARGKDLRELAAIVGEEALSERDRKYLKFADAFEREFVNQGFD 417
Score = 63.3 bits (155), Expect = 1e-10
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 10/93 (10%)
Query: 20 VYAVSGPVVTAEKMSGSAMYELVRVGYFEL------VGEIIRLEGDMATIQVYEETSGVT 73
V + GP++ E + G A E+V + EL G+++ + D A +QV+E T+G+
Sbjct: 7 VSEIKGPLLFVEGVEGVAYGEIVEI---ELPNGEKRRGQVLEVSEDKAVVQVFEGTTGLD 63
Query: 74 VGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 105
+ D +R TG+PL + + +LG IFDG+ RP+
Sbjct: 64 LKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPI 96
>gnl|CDD|236447 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.
Length = 463
Score = 94.8 bits (237), Expect = 1e-20
Identities = 106/344 (30%), Positives = 153/344 (44%), Gaps = 75/344 (21%)
Query: 207 WPV-RQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQAL---- 261
WP+ R+ E L TG +V+D L P GG + G G GKTV+ Q L
Sbjct: 109 WPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNI 168
Query: 262 ----SKYSNSDVIVYVGCGER---GN----EMAEVLRDFPELTIEVDGVTESIMKRTTLV 310
YS V+ G GER GN EM E GV + +T LV
Sbjct: 169 AKEHGGYS-----VFAGVGERTREGNDLYHEMKES------------GV----LDKTALV 207
Query: 311 ANTSNMPVAAREASIYTGITLSEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPAD 369
N P AR TG+T++EYFRD G +V + D+ R+ +A E+S L MP+
Sbjct: 208 FGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSA 267
Query: 370 SGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDP--VT-----SA 422
GY L + ER K +GS++ V AV P D +DP T A
Sbjct: 268 VGYQPTLATEMGQLQERITSTK-------KGSITSVQAVYVPADDLTDPAPATTFAHLDA 320
Query: 423 TLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLR-----TKV 477
T V L +++A+ +P+++ L S S R LD P V +V
Sbjct: 321 T--TV-----LSRQIAELGIYPAVDPLDSTS---RILD-------PLIVGEEHYDVAREV 363
Query: 478 KEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQN 521
++ILQ ++L +I+ ++G L+E DK+T+ A+ ++ FL Q
Sbjct: 364 QQILQRYKELQDIIAILGMDELSEEDKLTVARARKIQ-RFLSQP 406
Score = 42.8 bits (102), Expect = 4e-04
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 17 FGFVYAVSGPVVTAEKMSGS--AMYELVRVGYF---ELVGEIIRLEGD--MATIQVYEET 69
G + V GPVV E G +Y + V +LV E+ + GD + TI T
Sbjct: 3 TGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTI-AMGST 61
Query: 70 SGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIP 118
G+ G V+ TG P+SV +G LG IF+ + P+ + + P
Sbjct: 62 DGLVRGMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKGPIGAEERWP 110
>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic)
subunit B. These ATPases couple ATP hydrolysis to the
build up of a H+ gradient, but V-type ATPases do not
catalyze the reverse reaction. The Vacuolar (V-type)
ATPase is found in the membranes of vacuoles, the golgi
apparatus and in other coated vesicles in eukaryotes.
Archaea have a protein which is similar in sequence to
V-ATPases, but functions like an F-ATPase (called
A-ATPase). A similar protein is also found in a few
bacteria. This subfamily consists of the non-catalytic
beta subunit.
Length = 276
Score = 91.2 bits (227), Expect = 2e-20
Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 22/201 (10%)
Query: 259 QA-LSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMP 317
QA + + +V+ G + DF E ++R L N +N P
Sbjct: 92 QAGVVGEEENFAVVFAAMGITMEDARFFKDDFEET---------GALERVVLFLNLANDP 142
Query: 318 VAAREASIYTGITLSEYFR-DMGYNV-SMMADSTSRWAEALREISGRLAEMPADSGYPAY 375
R + +T +EY + G +V ++ D T+ +AEALREIS E+P GYP Y
Sbjct: 143 TIERIITPRMALTTAEYLAYEKGKHVLVILTDMTN-YAEALREISAAREEVPGRRGYPGY 201
Query: 376 LGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGL 433
+ LA+ YERAGRV+ R GS++ + ++ P D + P+ T I Q+ L
Sbjct: 202 MYTDLATIYERAGRVE-----GRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIV--L 254
Query: 434 DKKLAQRKHFPSINWLISYSK 454
D++L R +P IN L S S+
Sbjct: 255 DRQLHNRGIYPPINVLPSLSR 275
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 92.3 bits (229), Expect = 6e-20
Identities = 73/261 (27%), Positives = 126/261 (48%), Gaps = 24/261 (9%)
Query: 227 TGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVL 286
TG + +DS+ +G I G GK+ + ++K + +D+ V GERG E+ + +
Sbjct: 142 TGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFI 201
Query: 287 RDFPELTIEVDGVTESIMKRTTLVANTSNMP--VAAREASIYTGITLSEYFRDMGYNVSM 344
R + E M+++ +V TS+ + R A + T I +EYFRD G NV +
Sbjct: 202 RK---------ELGEEGMRKSVVVVATSDESHLMQLRAAKLATSI--AEYFRDQGNNVLL 250
Query: 345 MADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSI 404
M DS +R+A+A R + + E+P G + + + ER+G+ + +GS++
Sbjct: 251 MMDSVTRFADARRSVDIAVKELPI-GGKTLLMESYMKKLLERSGKTQ-------KGSITG 302
Query: 405 VGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYD 464
+ V G D + PV GI+ L ++LA H+P+I+ L S S+ M ++
Sbjct: 303 IYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIM---EEIVS 359
Query: 465 KNHPEFVPLRTKVKEILQEEE 485
NH + K+ I +E E
Sbjct: 360 PNHWQLANEMRKILSIYKENE 380
>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy
production and conversion].
Length = 463
Score = 91.6 bits (228), Expect = 1e-19
Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 306 RTTLVANTSNMPVAAREASIYTGITLSEYFR-DMGYNV-SMMADSTSRWAEALREISGRL 363
R L N ++ P R + +T++EY + +V ++ D T+ + EALREIS
Sbjct: 208 RAVLFLNLADDPAVERIITPRMALTVAEYLAFEKDMHVLVILTDMTN-YCEALREISAAR 266
Query: 364 AEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSAT 423
E+P GYP Y+ LA+ YERAGR++ R+GS++ + ++ PG D + P+ T
Sbjct: 267 EEVPGRRGYPGYMYTDLATIYERAGRIR-----GRKGSITQIPILTMPGDDITHPIPDLT 321
Query: 424 LGIV--QVFWGLDKKLAQRKHFPSINWLISYSKYM-------RALDDFYDKNHPEFVPLR 474
I Q+ L + L ++ +P IN L S S+ M + +D H + +
Sbjct: 322 GYITEGQIV--LSRDLHRKGIYPPINVLPSLSRLMKDGIGEGKTRED-----HGD---VS 371
Query: 475 TKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSY 523
++ E DL E+V +VG+ +L+E D+ L+ A L + F++Q Y
Sbjct: 372 NQLYAAYAEGRDLRELVAVVGEEALSERDRKYLKFADLFEQRFIKQGRY 420
Score = 68.1 bits (167), Expect = 5e-12
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 23 VSGPVVTAEKMSGSAMYELVRV----GYFELVGEIIRLEGDMATIQVYEETSGVTVGDPV 78
+ GP++ E + G++ ELV + G G+++ + GD A +QV+E TSG+
Sbjct: 13 IKGPLIIVEGVEGASYGELVEIETPDGEVRR-GQVLEVRGDKAVVQVFEGTSGLDTKGTT 71
Query: 79 LR-TGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALN---RDVSWEF 134
+R TG+ L + + +LG IF+G +P+ E+ + +N +N R EF
Sbjct: 72 VRFTGETLKIPVSEDLLGRIFNGSGKPIDGGPEIVPEDRLD--INGAPINPYARIYPEEF 129
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 87.8 bits (218), Expect = 2e-18
Identities = 89/339 (26%), Positives = 145/339 (42%), Gaps = 32/339 (9%)
Query: 209 VRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSD 268
++ P ++ + G + +D L C G I G GK+ + + K +
Sbjct: 125 MKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAP 184
Query: 269 VIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTG 328
+ V GERG E+ E F E + D ++ T +V TS+ R+ +
Sbjct: 185 IKVVALIGERGREIPE----FIEKNLGGD------LENTVIVVATSDDSPLMRKYGAFCA 234
Query: 329 ITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAG 388
++++EYF++ G +V + DS +R+A A REI L E P GYP + + L ERA
Sbjct: 235 MSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERA- 293
Query: 389 RVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINW 448
G + +GS++ V G D SDP+ + I+ L ++L +P IN
Sbjct: 294 -----GKEEGKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINI 348
Query: 449 LISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLE 508
L S S+ M +D H ++ +L+E E L I A +DK L+
Sbjct: 349 LNSASRVM---NDIISPEHKLAARKFKRLYSLLKENEVLIRI-----GAYQKGNDK-ELD 399
Query: 509 VA---KLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544
A K + FL+QN + PF +T L ++
Sbjct: 400 EAISKKEFMEQFLKQNPNELF----PFEQTFEQLEEILR 434
Score = 30.8 bits (70), Expect = 2.2
Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 7 KMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRV----GYFELVGEIIRLEGDMAT 62
K+ + RFG + +S ++ A+ ++ S + ++V++ E +G ++ +E +
Sbjct: 9 KLQKFNLSPRFGSITKISPTIIEADGLNPS-VGDIVKIESSDNGKECLGMVVVIEKEQFG 67
Query: 63 IQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIP-KGV 121
I + G +GD V + + L++ +G +LG + D + RP+ + Y P
Sbjct: 68 ISPFSFIEGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKA 127
Query: 122 NIPALNR 128
I A+ R
Sbjct: 128 PIAAMKR 134
>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 466
Score = 87.9 bits (218), Expect = 2e-18
Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 15/231 (6%)
Query: 304 MKRTTLVANTSNMPVAAREASIYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGR 362
M+R L N +N P R + +T +EY +V ++ S +A+ALRE+S
Sbjct: 210 MERVCLFLNLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAA 269
Query: 363 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSA 422
E+P G+P Y+ LA+ YERAGRV+ R GS++ + ++ P D + P+
Sbjct: 270 REEVPGRRGFPGYMYTDLATIYERAGRVE-----GRNGSITQIPILTMPNDDITHPIPDL 324
Query: 423 TLGIV--QVFWGLDKKLAQRKHFPSINWLISYSKYMRAL--DDFYDKNHPEFVPLRTKVK 478
T I Q++ +D++L R+ +P IN L S S+ M++ + K+H + + ++
Sbjct: 325 TGYITEGQIY--VDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSD---VSNQLY 379
Query: 479 EILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRF 529
+D+ + +VG+ +L+ D + LE + +F+ Q Y F
Sbjct: 380 ACYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFIAQGPYENRTIF 430
Score = 43.6 bits (103), Expect = 3e-04
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 20 VYAVSGPVVTAEKMSGSAMYELVRVGY---FELVGEIIRLEGDMATIQVYEETSGVTVGD 76
V V+GP+V + + E+V + G+++ + G+ A +QV+E TSG+
Sbjct: 5 VSGVNGPLVILDNVKFPRFAEIVNLTLPDGTVRSGQVLEVSGNKAVVQVFEGTSGIDAKK 64
Query: 77 PVLR-TGKPLSVELGPGILGSIFDGIQRPL 105
TG L + +LG +F+G +P+
Sbjct: 65 TTCEFTGDILRTPVSEDMLGRVFNGSGKPI 94
>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit.
Length = 494
Score = 88.2 bits (219), Expect = 2e-18
Identities = 95/312 (30%), Positives = 144/312 (46%), Gaps = 47/312 (15%)
Query: 227 TGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQAL----SKYSNSDVIVYVGCGER---G 279
TG +V+D L P GG + G G GKTV+ L +K ++ V V+ G GER G
Sbjct: 147 TGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREG 205
Query: 280 N----EMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYF 335
N EM E I + ES + LV N P AR T +T++EYF
Sbjct: 206 NDLYMEMKE------SGVINEQNIAES---KVALVYGQMNEPPGARMRVGLTALTMAEYF 256
Query: 336 RDMGY-NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLG 394
RD+ +V + D+ R+ +A E+S L MP+ GY L + S ER K
Sbjct: 257 RDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTK--- 313
Query: 395 NPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSK 454
EGS++ + AV P D +DP + T + L + LA + +P+++ L S S
Sbjct: 314 ----EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTST 369
Query: 455 YMRALDDFYDKNHPEFV-----PLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEV 509
++ P V +VK+ LQ ++L +I+ ++G L+E D++T V
Sbjct: 370 MLQ----------PRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLT--V 417
Query: 510 AKLLK-DDFLQQ 520
A+ K + FL Q
Sbjct: 418 ARARKIERFLSQ 429
Score = 35.4 bits (82), Expect = 0.095
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 10/126 (7%)
Query: 3 TALGKMADEDREGRFGFVYAVSGPVVTAEKMSGS--AMYELVRV-------GYFELVGEI 53
G E G + + GPV+ G +Y + V + E+
Sbjct: 2 NPTGPGVSTLEEKNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEV 61
Query: 54 IRLEGDMATIQV-YEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELS 112
+L G+ V T G+ G V+ TG PLSV +G LG IF+ + P+ ++ +
Sbjct: 62 QQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVD 121
Query: 113 QSIYIP 118
P
Sbjct: 122 TRTTSP 127
>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha
subunit. The sequences of ATP synthase F1 alpha and
beta subunits are related and both contain a
nucleotide-binding site for ATP and ADP. They have a
common amino terminal domain but vary at the C-terminus.
The beta chain has catalytic activity, while the alpha
chain is a regulatory subunit. The alpha-subunit
contains a highly conserved adenine-specific
noncatalytic nucleotide-binding domain. The conserved
amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton
translocating ATP synthase F1, alpha subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), B subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 501
Score = 88.2 bits (219), Expect = 2e-18
Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 27/256 (10%)
Query: 208 PVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS-QALSKYS 265
PV + P V E+ + PL TG + +D++ P G I G GKT ++ +
Sbjct: 127 PVEKIAPGVIERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDTIINQK 186
Query: 266 NSDVI-VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREAS 324
+SDV +YV G++ + +A+V+R +E G M T +VA T++ + + +
Sbjct: 187 DSDVYCIYVAIGQKASTVAQVVR-----KLEEHGA----MAYTIVVAATASDSASLQYLA 237
Query: 325 IYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLA 381
YTG T+ EYFRD G + ++ D S+ A A R+IS L P +P YL +RL
Sbjct: 238 PYTGCTMGEYFRDNGKHALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRL- 296
Query: 382 SFYERAGRVKCLGNPDR-EGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLA 438
ERA ++ N ++ GS++ + + GD S + + + I Q+F L+ L
Sbjct: 297 --LERAAKL----NDEKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIF--LESDLF 348
Query: 439 QRKHFPSINWLISYSK 454
P+IN +S S+
Sbjct: 349 NSGIRPAINVGLSVSR 364
Score = 33.9 bits (78), Expect = 0.25
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFE--LVGEIIRLEGDMATIQVYEETSGVTVG 75
G V +V + + EL+ FE + G + LE D + + S + G
Sbjct: 28 GTVVSVGDGIARVYGLENVMSGELIE---FEGGVQGIALNLEEDSVGAVIMGDYSDIREG 84
Query: 76 DPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
V RTG+ L V +G G+LG + + + P+
Sbjct: 85 STVKRTGRILEVPVGDGLLGRVVNALGEPI 114
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 85.7 bits (212), Expect = 9e-18
Identities = 87/333 (26%), Positives = 141/333 (42%), Gaps = 48/333 (14%)
Query: 214 PVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYV 273
P+ E P TG + +D+ G + G GK+ + ++K S S + V
Sbjct: 136 PIQEIFP------TGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIA 189
Query: 274 GCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSE 333
GERG E+ E + E G+ +RT ++A+ ++ + + +T++E
Sbjct: 190 LIGERGREVREYIEQHKE------GLAA---QRTIIIASPAHETAPTKVIAGRAAMTIAE 240
Query: 334 YFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL 393
YFRD G+ V + DS SRW AL+E++ E + Y A + ++ F ERA
Sbjct: 241 YFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERA------ 294
Query: 394 GNPDREGSVSIVGAV--SPPGGD-FSDPVTSATLGIVQVFWGLDKKLAQRKHF--PSINW 448
GN D+ GS++ + A+ P D F+D + S G F Q K P I+
Sbjct: 295 GNNDK-GSITALYAILHYPNHPDIFTDYLKSLLDG--HFFLT-----PQGKALASPPIDI 346
Query: 449 LISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLE 508
L S S+ R L P +++ +L+ + +I+QL A + D
Sbjct: 347 LTSLSRSARQL------ALPHHYAAAEELRSLLKAYHEALDIIQL--GAYVPGQDAHLDR 398
Query: 509 VAKLLKD--DFLQQNSYSPYDRFCPFYKTVGML 539
KLL FL Q P +C + T+ L
Sbjct: 399 AVKLLPSIKQFLSQ----PLSSYCALHNTLKQL 427
Score = 32.6 bits (74), Expect = 0.69
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVG---YFELVGEIIRLEGDMATIQVYEETSGVTV 74
G + VSG ++ A+ +S + + EL ++ ++ E+I + V +
Sbjct: 21 GLLSRVSGNLLEAQGLS-ACLGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVAL 79
Query: 75 GDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQS 114
G VL +P S+ L +LG + DG PL +L ++
Sbjct: 80 GAEVLPLRRPPSLHLSDHLLGRVLDGFGNPLDGKEQLPKT 119
>gnl|CDD|238552 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta and
epsilon subunits with a stoichiometry of 3:3:1:1:1. The
alpha subunit of the F1 ATP synthase can bind
nucleotides, but is non-catalytic.
Length = 274
Score = 81.5 bits (202), Expect = 5e-17
Identities = 75/257 (29%), Positives = 119/257 (46%), Gaps = 29/257 (11%)
Query: 208 PVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS-QALSKYS 265
P+ P + + N PL TG + +D++ P G I G GKT I+ +
Sbjct: 35 PIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK 94
Query: 266 NSDVI-VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREAS 324
V +YV G++ + +A+V++ T+E G M+ T +VA T++ P + +
Sbjct: 95 GKKVYCIYVAIGQKASTVAQVVK-----TLEEHGA----MEYTIVVAATASDPAPLQYLA 145
Query: 325 IYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLA 381
YTG + EYF D G + ++ D S+ A A R++S L P YP YL +RL
Sbjct: 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL- 204
Query: 382 SFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFS----DPVTSATLGIVQVFWGLDKKL 437
ERA + L + GS++ + + GD S V S T G Q+F L+ L
Sbjct: 205 --LERAAK---LNDELGGGSLTALPIIETQAGDVSAYIPTNVISITDG--QIF--LETDL 255
Query: 438 AQRKHFPSINWLISYSK 454
+ P+IN +S S+
Sbjct: 256 FNKGIRPAINVGLSVSR 272
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 76.0 bits (187), Expect = 4e-16
Identities = 47/178 (26%), Positives = 69/178 (38%), Gaps = 36/178 (20%)
Query: 244 TAIPGAFGCGKTVISQALSKYSNS--DVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTE 301
+ G G GKT ++ L+ + +VYV E E+ E L L
Sbjct: 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGE-SLKGA------ 54
Query: 302 SIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISG 361
+ +V T++ P AAR S +E R+ G + ++ D +R ALREI
Sbjct: 55 --LDNLIIVFATADDPAAARLLSK------AERLRERGGDDLIILDELTRLVRALREIR- 105
Query: 362 RLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPV 419
GYP L L ERA R+G V+++ + P GD DP
Sbjct: 106 --------EGYPGELDEELRELLERA----------RKGGVTVIFTLQVPSGDKGDPR 145
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 77.4 bits (190), Expect = 7e-15
Identities = 72/256 (28%), Positives = 116/256 (45%), Gaps = 34/256 (13%)
Query: 215 VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS------------QALS 262
+ + P NY LLTG + +D++ P G I G GKT I+ Q LS
Sbjct: 163 IVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILS 222
Query: 263 KYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322
K N+ + +YV G+R + +A + R + ++ TT++A T+ P +
Sbjct: 223 K--NAVISIYVSIGQRCSNVARIHRLLR---------SYGALRYTTVMAATAAEPAGLQY 271
Query: 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGAR 379
+ Y+G+T+ EYF + G + + D S+ A A R+IS L P YP YL +R
Sbjct: 272 LAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSR 331
Query: 380 LASFYERAGRVKCLGNPDR-EGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLA 438
L ERA + +P + GSV+ + V D + + + + I LD KL
Sbjct: 332 L---LERAAML----SPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLF 384
Query: 439 QRKHFPSINWLISYSK 454
P++N +S S+
Sbjct: 385 TGGQRPAVNIGLSVSR 400
>gnl|CDD|217261 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family,
beta-barrel domain. This family includes the ATP
synthase alpha and beta subunits the ATP synthase
associated with flagella.
Length = 69
Score = 68.3 bits (168), Expect = 1e-14
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 20 VYAVSGPVVTAEKMSGSA--MYELVRVGYFE----LVGEIIRLEGDMATIQVYEETSGVT 73
+ V GPVV E G +Y + V E L+GE++ L GD + V T G++
Sbjct: 1 IVQVIGPVVDVEFGIGRLPGLYNALEVELVEFGNGLLGEVLNLGGDKVRVVVMGGTDGLS 60
Query: 74 VGDPVLRTG 82
GD V RTG
Sbjct: 61 RGDEVKRTG 69
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 76.1 bits (188), Expect = 2e-14
Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 18/189 (9%)
Query: 208 PVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS-QALSKYS 265
P+ +P P + E+ PL TG +V+D+L P G I G GKT I+ A+
Sbjct: 128 PLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAIINQK 187
Query: 266 NSDVI-VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREAS 324
+SDVI VYV G++ + +A V+ T+ G ++ TT+V ++ P + +
Sbjct: 188 DSDVICVYVAIGQKASAVARVIE-----TLREHGA----LEYTTVVVAEASDPPGLQYLA 238
Query: 325 IYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLA 381
+ G ++EYFRD G + ++ D S+ A A RE+S L P YP YL +RL
Sbjct: 239 PFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRL- 297
Query: 382 SFYERAGRV 390
ERA ++
Sbjct: 298 --LERAAKL 304
Score = 46.8 bits (112), Expect = 2e-05
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFE--LVGEIIRLEGDMATIQVYEETSGVTVG 75
G V +V + + +A+ EL+R FE G LE ++ + ++T+ + G
Sbjct: 29 GRVESVGDGIAFVSGLPDAALDELLR---FEGGSRGFAFNLEEELVGAVLLDDTADILAG 85
Query: 76 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPA---LNRD 129
V RTG+ L V +G G+LG + D + RPL L + P + PA + RD
Sbjct: 86 TEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRP--LERPAPAIIERD 140
>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy
production and conversion].
Length = 504
Score = 73.0 bits (180), Expect = 1e-13
Identities = 67/208 (32%), Positives = 97/208 (46%), Gaps = 33/208 (15%)
Query: 208 PVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT------VISQA 260
PV + P V ++ N PL TG + +D+L P G I G GKT +I+Q
Sbjct: 128 PVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQ- 186
Query: 261 LSKYSNSDVI-VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVA 319
S V +YV G++ + +A V+R T+E G M T +VA +++
Sbjct: 187 ----KGSGVKCIYVAIGQKRSTVANVVR-----TLEEHG----AMDYTIVVAASASDSAP 233
Query: 320 AREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YL 376
+ + Y G ++EYFRD G +V ++ D S+ A A REIS L P YP YL
Sbjct: 234 LQYLAPYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYL 293
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSI 404
+RL ERA ++ D G SI
Sbjct: 294 HSRL---LERAAKLS-----DELGGGSI 313
Score = 34.1 bits (79), Expect = 0.20
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 51 GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
G + LE D + + S + GD V RTG+ L V +G +LG + D + P+
Sbjct: 61 GMALNLEEDSVGAVILGDYSDIKEGDEVKRTGRILEVPVGEELLGRVVDALGNPI 115
>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit.
Length = 485
Score = 68.8 bits (169), Expect = 3e-12
Identities = 81/253 (32%), Positives = 114/253 (45%), Gaps = 38/253 (15%)
Query: 213 RPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN---SDV 269
R V E PL TG +DS+ P G I G GKT + A N +V
Sbjct: 119 RSVYE------PLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAV--ATDTILNQKGQNV 170
Query: 270 I-VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTG 328
I VYV G++ + +A+V+ E M+ T +VA T++ P + + YTG
Sbjct: 171 ICVYVAIGQKASSVAQVVTTLQE---------RGAMEYTIVVAETADSPATLQYLAPYTG 221
Query: 329 ITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYE 385
L+EYF G + ++ D S+ A+A R++S L P YP YL +RL E
Sbjct: 222 AALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LE 278
Query: 386 RAGRVKCLGNPDREGSVSIVGAVSPPGGDFSD--P--VTSATLGIVQVFWGLDKKLAQRK 441
RA + L + EGS++ + V GD S P V S T G Q+F L L
Sbjct: 279 RAAK---LSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDG--QIF--LSADLFNAG 331
Query: 442 HFPSINWLISYSK 454
P+IN IS S+
Sbjct: 332 IRPAINVGISVSR 344
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha.
A small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F1 alpha subunit of this apparent
second ATP synthase.
Length = 497
Score = 63.6 bits (155), Expect = 1e-10
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 18/186 (9%)
Query: 208 PVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS-QALSKYS 265
P+ +P P + ++ P PL TG +V+D+L P G I G GKT I+ +
Sbjct: 128 PIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQK 187
Query: 266 NSDVI-VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREAS 324
+V+ +Y G+R + +A+V+ + E M T +V N P + +
Sbjct: 188 GRNVLCIYCAIGQRASAVAKVVANLRE---------HGAMDYTIVVVTEGNDPPGLQYIA 238
Query: 325 IYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLA 381
Y ++ E+F + G +V ++ D ++ A A RE+S L P +P Y+ +RL
Sbjct: 239 PYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRL- 297
Query: 382 SFYERA 387
ER+
Sbjct: 298 --LERS 301
Score = 33.6 bits (77), Expect = 0.29
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 68 ETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
E S + GD V RTG+ + V +G G+LG + D + RPL
Sbjct: 78 EYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPL 115
>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 55.5 bits (135), Expect = 5e-08
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 59/203 (29%)
Query: 210 RQPRPVTEKLPANYPLLTGQRVLDSLFPC-------VLG----GTTAIPGAFGCGKTVIS 258
R+ V E PL TG + +D++ P ++G G TAI T+I+
Sbjct: 139 RKS--VHE------PLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAI-----AIDTIIN 185
Query: 259 QALSKYSNSDVI-VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMP 317
Q DVI +YV G++ + +A+V+R +E G M+ T +VA T++ P
Sbjct: 186 Q-----KGKDVICIYVAIGQKASTVAQVVR-----KLEEHGA----MEYTIVVAATASDP 231
Query: 318 VAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREIS-------GRLAEMPADS 370
+ + Y G + EYF D G + ++ D S+ A A R++S GR A
Sbjct: 232 APLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREA------ 285
Query: 371 GYPA---YLGARLASFYERAGRV 390
YP YL +RL ERA ++
Sbjct: 286 -YPGDVFYLHSRL---LERAAKL 304
Score = 33.9 bits (79), Expect = 0.24
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 68 ETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
+ + GD V RTG+ L V +G +LG + + + +P+
Sbjct: 78 DYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPI 115
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional.
Length = 436
Score = 54.7 bits (132), Expect = 7e-08
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 44 VGYFELV----------GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGI 93
VGY EL ++IRL+GD T+QV+ T G++ GD V+ G+P+ V +
Sbjct: 23 VGYGELATVERKDGSSLAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESL 82
Query: 94 LGSIFDGIQRP 104
LG F+G +P
Sbjct: 83 LGRRFNGSGKP 93
Score = 49.6 bits (119), Expect = 3e-06
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 304 MKRTTLVANTSNMPVAAREASIYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGR 362
+ RT + +T++ P + ++E F + V ++ + +A+AL+EIS
Sbjct: 194 LDRTVMFIHTASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMTNFADALKEISIT 253
Query: 363 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSA 422
+ ++P++ GYP L + LAS YE+A + GS++I+ + PG D + PV
Sbjct: 254 MDQIPSNRGYPGSLYSDLASRYEKAVDF------EDGGSITIIAVTTMPGDDVTHPVPDN 307
Query: 423 T 423
T
Sbjct: 308 T 308
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 33.9 bits (77), Expect = 0.096
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 241 GGTTAIPGAFGCGKTVISQALSKYSNSD--VIVYVGCGERGNEMAEVLRDFPELTIEVDG 298
G I G G GKT +++AL++ ++Y+ + E+ + L + G
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 299 VTESIMKRTTLVANTSNMPV 318
E ++ +A V
Sbjct: 62 SGELRLRLALALARKLKPDV 81
>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase. This model
represents the pyridoxal phosphate-dependent glutamate
(alpha) decarboxylase found in bacteria (low and hi-GC
gram positive, proteobacteria and cyanobacteria),
plants, fungi and at least one archaon (Methanosarcina).
The product of the enzyme is gamma-aminobutyrate (GABA).
Length = 431
Score = 33.5 bits (77), Expect = 0.29
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 15/77 (19%)
Query: 92 GILGSIFDGIQRPLKDINELSQSIYIPKGVNIPA-------------LNRDVSWEFNPMN 138
ILG+ + G +K +N+ G +IP + D+ W+F
Sbjct: 192 CILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPR 251
Query: 139 LKIGSHITGGDQYGLVH 155
+K S G +YGLV+
Sbjct: 252 VK--SINVSGHKYGLVY 266
>gnl|CDD|224847 COG1936, COG1936, Predicted nucleotide kinase (related to CMP and
AMP kinases) [Nucleotide transport and metabolism].
Length = 180
Score = 31.1 bits (71), Expect = 0.99
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 13/71 (18%)
Query: 245 AIPGAFGCGKTVISQALSKY-----SNSDVIVYVGCGERGNEMA-------EVLRDF-PE 291
AI G G GKT + + L + +++ G +E+ + LR E
Sbjct: 4 AITGTPGVGKTTVCKLLRELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEE 63
Query: 292 LTIEVDGVTES 302
L E G+ +S
Sbjct: 64 LLREGSGIVDS 74
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 30.0 bits (68), Expect = 2.4
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 245 AIPGAFGCGKTVISQALSKYSNSDVIVYVG------CGERG---NEMAEVLRDFPELTIE 295
I G G GKT +++ L+++ ++ G ERG E + + PE+ E
Sbjct: 4 TISGLPGSGKTTVARELAEHLGLKLV-SAGTIFREMARERGMSLEEFSRYAEEDPEIDKE 62
Query: 296 VDGVTESIMKRTTLV 310
+D + + K +V
Sbjct: 63 IDRRQKELAKEGNVV 77
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 30.5 bits (70), Expect = 3.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 587 PVKDGEAKTRADFDQLYEDIQQAF 610
P+KDGE T +F+ L E+ ++
Sbjct: 157 PLKDGEPLTEEEFEALPEEEREEL 180
>gnl|CDD|143944 pfam00178, Ets, Ets-domain.
Length = 85
Score = 27.7 bits (62), Expect = 4.6
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 18/61 (29%)
Query: 408 VSPPGGDF--SDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDK 465
G+F DP A L WG RK+ P++N Y K RAL +Y K
Sbjct: 24 TGRDKGEFKLVDPEEVARL------WG------IRKNKPNMN----YDKLSRALRYYYKK 67
Query: 466 N 466
Sbjct: 68 G 68
>gnl|CDD|222621 pfam14244, UBN2_3, gag-polypeptide of LTR copia-type. This family
is found in Plants and fungi, and contains
LTR-polyproteins, or retrotransposons of the copia-type.
Length = 135
Score = 28.5 bits (64), Expect = 4.7
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 448 WLISYSKYM--RALDDFYDKNHPEFVPLRTKVKEILQEEEDLSE 489
WL + +K + + F D N L+ ++ + Q ++E
Sbjct: 65 WLFNTAKEVWDALKERFSDGNTSRVFELKREIARLKQGGLSVTE 108
>gnl|CDD|173170 PRK14707, PRK14707, hypothetical protein; Provisional.
Length = 2710
Score = 30.1 bits (67), Expect = 5.1
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 253 GKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVAN 312
G ++ ALSK+ ++ V C E N +AE L D P+L E+D V + ++
Sbjct: 584 GVVIVLNALSKWPDTAV-----CAEAVNALAERLVDEPDLRKELDPV--DVTNVLNALSK 636
Query: 313 TSNMPVAAREASIYTGITLSEYFRDMGYN---VSMMADSTSRWAEA--LREISGRLAE-M 366
V A A + G + + +N V+ ++ S+W + +G +AE +
Sbjct: 637 WPGTEVCAEVARLLAGRLVGDRLLRKTFNSLDVANALNALSKWPDTPVCAAAAGGMAERL 696
Query: 367 PADSG 371
AD G
Sbjct: 697 AADPG 701
>gnl|CDD|238543 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B. This group of
recombinases includes the eukaryotic proteins RAD51,
RAD55/57 and the meiosis-specific protein DMC1, and the
archaeal proteins radA and radB. They are closely
related to the bacterial RecA group. Rad51 proteins
catalyze a similiar recombination reaction as RecA,
using ATP-dependent DNA binding activity and a
DNA-dependent ATPase. However, this reaction is less
efficient and requires accessory proteins such as
RAD55/57 .
Length = 235
Score = 29.1 bits (66), Expect = 5.4
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 227 TGQRVLDSL----FPCVLGGTTAIPGAFGCGKT 255
TG + LD L G T I G FG GKT
Sbjct: 3 TGSKALDELLGGGIET--GSITEIFGEFGSGKT 33
>gnl|CDD|197710 smart00413, ETS, erythroblast transformation specific domain.
variation of the helix-turn-helix motif.
Length = 87
Score = 27.6 bits (62), Expect = 5.7
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 10/36 (27%)
Query: 431 WGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKN 466
WG QRK+ P++N Y K RAL +Y KN
Sbjct: 43 WG------QRKNKPNMN----YEKLSRALRYYYKKN 68
>gnl|CDD|224455 COG1538, TolC, Outer membrane protein [Cell envelope biogenesis,
outer membrane / Intracellular trafficking and
secretion].
Length = 457
Score = 29.4 bits (66), Expect = 6.0
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 434 DKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEF 470
+ A+ P+++ SY + L + + +
Sbjct: 284 NIGAARAAFLPTLSLTASYGRSSTNLSGLFGSSSRSW 320
>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction
of the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange. While prokaryotes have a single RecA
protein, eukaryotes have multiple RecA homologs such as
Rad51, DMC1 and Rad55/57. Archaea have the RecA-like
homologs radA and radB.
Length = 226
Score = 28.7 bits (65), Expect = 7.8
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 227 TGQRVLDSL----FPCVLGGTTAIPGAFGCGKT 255
TG + LD L P G T I G FG GKT
Sbjct: 3 TGSKALDELLGGGIPT--GRITEIFGEFGSGKT 33
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 29.3 bits (66), Expect = 8.0
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 208 PVRQPRPVTEKLPANYPLLTGQRVLDSL-FPCVLGGTTAIPGAFGCGKTVISQAL 261
+ +P L A YP VLD + G AI G G GK+ + L
Sbjct: 329 GLGKPTLELRDLSAGYP--GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATL 381
>gnl|CDD|234529 TIGR04267, mod_HExxH, HEXXH motif domain. Some proteins with this
domain toward the C-terminus have an N-terminal region
with a radical SAM domain (pfam04055) and a SPASM domain
(TIGR04085), a combination frequently associated with
peptide modification. All seed alignment members, and
all family members that are not fused to a radical SAM
domain, have a motif HEXXH that suggests metalloprotease
activity. A role in peptide or protein maturation is
suggested.
Length = 399
Score = 28.9 bits (65), Expect = 9.9
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 348 STSRWA-EALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSI-- 404
S WA LR R + YLGA A+ RAG L P R+G + +
Sbjct: 75 SVGAWAARCLRR--LRAPSDGPLAADLGYLGAIAAAAALRAGLPFRLAVPLRDGRLLLPT 132
Query: 405 VGAVSPPGGD 414
+G V P
Sbjct: 133 LGRVLLPEAG 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.391
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,774,961
Number of extensions: 3178290
Number of successful extensions: 3606
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3460
Number of HSP's successfully gapped: 129
Length of query: 615
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 512
Effective length of database: 6,369,140
Effective search space: 3260999680
Effective search space used: 3260999680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.6 bits)