RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13480
(615 letters)
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 892 bits (2307), Expect = 0.0
Identities = 308/596 (51%), Positives = 415/596 (69%), Gaps = 18/596 (3%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + V+GP+V A+ M G+ MYE+VRVG L+GEIIRLEGD A IQVYEET+GV G+P
Sbjct: 5 GRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEP 64
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG LSVELGP +L SI+DGIQRPL+ I E + +I +GV PAL RD W F P
Sbjct: 65 VVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIP- 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEF-DG 196
K+G + GGD G V E +++ HK+++PP +G + IA G+Y ++EV+ + + G
Sbjct: 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSG 182
Query: 197 EKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTV 256
E + M Q WPVR RP EKLP PL+TGQRV+D+ FP GGT AIPG G GKTV
Sbjct: 183 EIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGKTV 242
Query: 257 ISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
L+K+S++ V++Y+GCGERGNEM +VL +FP+L G + +M+RT L+ANTSNM
Sbjct: 243 TQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNM 300
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 376
PVAAREASIYTGIT++EYFRDMGY+V++MADSTSRWAEALREISGRL EMP + GYPAYL
Sbjct: 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYL 360
Query: 377 GARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKK 436
++LA FYERAGRV LG+ R GSVS++GAVSPPGGDFS+PV TL +V+VFW LD
Sbjct: 361 ASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDAD 420
Query: 437 LAQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVG 495
LA+R+HFP+INWL SYS Y+ A+ D++ KN PE+ +R K +LQ+E +L EIV++VG
Sbjct: 421 LARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 480
Query: 496 KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVES 555
+L E ++ L VA++L++D+LQQ+++ D +CP K V M+R ++ FYD + A+
Sbjct: 481 PDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINR 540
Query: 556 TAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFR 611
E +I +R+ ++ MKF+ V +K R+ D+ E ++ F+
Sbjct: 541 GVPLE-EIAKLPVRE-------EIGRMKFERDV----SKIRSLIDKTNEQFEELFK 584
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 866 bits (2240), Expect = 0.0
Identities = 300/597 (50%), Positives = 404/597 (67%), Gaps = 24/597 (4%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G + ++GP V A+ M G+ MY++ +VG LVGEIIRL+GD A +QVYE+TSG+ VG+P
Sbjct: 4 GVIQKIAGPAVIAKGMLGARMYDISKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEP 63
Query: 78 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALNRDVSWEFNPM 137
V+ TG PL+VELGPG+L I+DGIQRPL+ I E + IYI +GV + AL+R+ W + PM
Sbjct: 64 VVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKT-GIYITRGVVVHALDREKKWAWTPM 122
Query: 138 NLKIGSHITGGDQYGLVHENTLVKHKMIMPPKAKGTVTYIAPAGNYKVDEVVLETEFDGE 197
+K G + GG G V E HK+++PP +G V + PAG Y V+E V+ E E
Sbjct: 123 -VKPGDEVRGGMVLGTVPEFGFT-HKILVPPDVRGRVKEVKPAGEYTVEEPVVVLEDGTE 180
Query: 198 KSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVI 257
M WPVR+ RPV KL N P LTG R+LD LFP +GGT AIPG FG GK+V
Sbjct: 181 ---LKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVT 237
Query: 258 SQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMP 317
Q+L+K+SN+DV+VYVG GERGNEM +VL +FPELT G +M RT L+ANTSNMP
Sbjct: 238 QQSLAKWSNADVVVYVGSGERGNEMTDVLVEFPELTDPKTG--GPLMHRTVLIANTSNMP 295
Query: 318 VAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLG 377
VAAREASIY G+T++EYFRD G++V++MADSTSRWAEALREIS RL EMPA+ GYP YL
Sbjct: 296 VAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLA 355
Query: 378 ARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 437
ARLA+FYERAG+V LG EG+V+IVGAVSPPGGD S+PVT +TL IV FW LD L
Sbjct: 356 ARLAAFYERAGKVITLGG--EEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASL 413
Query: 438 AQRKHFPSINWLISYSKYMRALDDFYDKN-HPEFVPLRTKVKEILQEEEDLSEIVQLVGK 496
A R+HFP+INW SYS + ALD +Y +N ++ LR + E+LQ E L EIVQLVG
Sbjct: 414 AFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVGP 473
Query: 497 ASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMSRHAVEST 556
+L +++++ +EV +++++DFLQQN+Y D + K G+++ ++AFY + A++
Sbjct: 474 DALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMKMILAFYKEAEAAIKRG 533
Query: 557 AQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRNL 613
S ++I +L ++ ++ E + A F++ ++IQ AF+ L
Sbjct: 534 V-SIDEILQ-------LPVLERIGRARY-----VSEEEFPAYFEEAMKEIQGAFKAL 577
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 174 bits (443), Expect = 3e-48
Identities = 84/344 (24%), Positives = 146/344 (42%), Gaps = 35/344 (10%)
Query: 212 PRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVIS-----QA-LSKYS 265
P P + + TG +D V G I A G I+ QA +
Sbjct: 124 MNPYARLPPKD-FIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSE 182
Query: 266 NSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASI 325
++ +V+ G E + DF + ++R + N ++ P R +
Sbjct: 183 SAFAVVFAAMGITNEEAQYFMSDFEK---------TGALERAVVFLNLADDPAVERIVTP 233
Query: 326 YTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFY 384
+T +EY + G +V ++ + +AEALR++ E+P GYP Y+ LA+ Y
Sbjct: 234 RMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLY 293
Query: 385 ERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDKKLAQRKH 442
ERAG VK +GSV+ + +S PG D + P+ + I Q+ + ++L ++
Sbjct: 294 ERAGIVK-----GAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIV--VARELHRKGI 346
Query: 443 FPSINWLISYSKYMRAL--DDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLA 500
+P IN L S S+ M + ++H + ++ E DL +V +VGK +L+
Sbjct: 347 YPPINVLPSLSRLMNSGIGAGKTREDHKA---VSDQMYAGYAEGRDLRGLVAIVGKEALS 403
Query: 501 ESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544
E D LE A L +D F++Q T+ + ++
Sbjct: 404 ERDTKFLEFADLFEDKFVRQGRNEN----RTIEDTLEIGWQILT 443
Score = 77.0 bits (190), Expect = 4e-15
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 16 RFGFVYAVSGPVVTAEKMSGSAMYELVRV---GYFELVGEIIRLEGDMATIQVYEETSGV 72
+ + ++GP++ EK E+V + G+++ D+ +QV+E T G+
Sbjct: 13 EYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGL 72
Query: 73 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALN 127
V+ TG+ L + +LG I G P + + +N A+N
Sbjct: 73 DKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLD--INGAAMN 125
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 171 bits (436), Expect = 2e-47
Identities = 74/351 (21%), Positives = 146/351 (41%), Gaps = 43/351 (12%)
Query: 212 PRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVI-------------S 258
PV + P + TG +D + V G I G I
Sbjct: 119 LNPVARRKPEQ-FIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDL 177
Query: 259 QALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPV 318
+ +V+ G E++ +++F + R+ L N ++ P
Sbjct: 178 SGEGEKEEPFAVVFAAMGITQRELSYFIQEFER---------TGALSRSVLFLNKADDPT 228
Query: 319 AAREASIYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLG 377
R + +T++EY + Y+V ++ + ++EALREI E+P GYP Y+
Sbjct: 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMY 288
Query: 378 ARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFWGLDK 435
LA+ YERAG V+ ++GSV+ + +S P D + P+ T I Q+ L +
Sbjct: 289 TDLATIYERAGVVE-----GKKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQ--LSR 341
Query: 436 KLAQRKHFPSINWLISYSKYMRAL--DDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQL 493
+L ++ +P I+ L S S+ M ++H + + ++ D+ ++V +
Sbjct: 342 ELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQ---VSDQLYSAYANGVDIRKLVAI 398
Query: 494 VGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544
+G+ +L E+D+ L+ A + F+ Q + +++ + +++
Sbjct: 399 IGEDALTENDRRYLQFADAFERFFINQ-----GQQNRSIEESLQIAWALLS 444
Score = 74.0 bits (182), Expect = 3e-14
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 16 RFGFVYAVSGPVVTAEKMSGSAMYELVRV---GYFELVGEIIRLEGDMATIQVYEETSGV 72
+ + +SGP++ E A +V + G++I + + A IQV+EET+G+
Sbjct: 7 EYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGL 66
Query: 73 TVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALN 127
+ + + + +LG F+GI +P+ + ++ +P + LN
Sbjct: 67 DLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLP--ITGLPLN 120
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 168 bits (428), Expect = 3e-47
Identities = 82/355 (23%), Positives = 153/355 (43%), Gaps = 36/355 (10%)
Query: 195 DGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCG 253
+ + + P + + P + G R +D L C +G I G G
Sbjct: 24 ESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVG 83
Query: 254 KTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANT 313
K+ + + +++D+IV GERG E + +F + + +S + + LV T
Sbjct: 84 KSTLLGMICNGASADIIVLALIGERGRE----VNEF----LALLP--QSTLSKCVLVVTT 133
Query: 314 SNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 373
S+ P R + +T T++EYFRD G NV +M DS +R+A A R++ E G+P
Sbjct: 134 SDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFP 193
Query: 374 AYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFW 431
+ + L ERAG P +GS++ + V + +DP+ I+ +
Sbjct: 194 PSVFSSLPKLLERAG-------PAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV- 245
Query: 432 GLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIV 491
L ++LA+ HFP+I+ +S S+ M + E + + K+++ ++ ++
Sbjct: 246 -LTRELAEENHFPAIDIGLSASRVMHNVVT------SEHLRAAAECKKLIATYKNPELLI 298
Query: 492 QLVG--KASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544
++ E+DK + +F+QQ + KT+ L ++A
Sbjct: 299 RIGEYTMGQDPEADKAIKNRKLI--QNFIQQ----STKDISSYEKTIESLFKVVA 347
Score = 28.8 bits (65), Expect = 6.2
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 84 PLSVELGPGILGSIFDGIQRPL--KDINELSQSIYIPKGVNIPALNR 128
+ +G +LG + DGI RP+ + L R
Sbjct: 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLR 48
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 161 bits (410), Expect = 7e-44
Identities = 88/342 (25%), Positives = 151/342 (44%), Gaps = 29/342 (8%)
Query: 205 QVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSK 263
+ + P ++ P + L TG R +++L G + G GK+V+ +++
Sbjct: 120 ETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMAR 179
Query: 264 YSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREA 323
Y+ +DVIV GERG E ++DF E + DG R+ ++A +++ R
Sbjct: 180 YTRADVIVVGLIGERGRE----VKDFIENILGPDG-----RARSVVIAAPADVSPLLRMQ 230
Query: 324 SIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASF 383
++E FRD G +V ++ DS +R+A A REI+ + E PA GYP + A+L +
Sbjct: 231 GAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPAL 290
Query: 384 YERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHF 443
ERAG GS++ V G D DP+ + I+ L ++LA+ H+
Sbjct: 291 VERAGN-----GIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHY 345
Query: 444 PSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVG--KASLAE 501
P+I+ S S+ M AL + K++L + ++V + K S
Sbjct: 346 PAIDIEASISRAMTALIT------EQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPM 399
Query: 502 SDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMI 543
DK +L + FLQQ + + ++ L +
Sbjct: 400 LDKAITLWPQL--EAFLQQGIFER----ADWEDSLQALDLIF 435
Score = 53.1 bits (128), Expect = 1e-07
Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 15/135 (11%)
Query: 8 MADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRV------GYFELVGEIIRLEGDMA 61
MA R+G + +G V+ A + + E+ E++ G
Sbjct: 1 MALLPAVRRYGRLTRATGLVLEAT-GLQLPLGATCIIERQDGPETKEVESEVVGFNGQRL 59
Query: 62 TIQVYEETSGVTVGDPVLRTG-------KPLSVELGPGILGSIFDGIQRPLKDINELSQS 114
+ EE G+ G V + LGP +LG + DG +PL +
Sbjct: 60 FLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTL 119
Query: 115 IYIP-KGVNIPALNR 128
L R
Sbjct: 120 ETGALITPPFNPLQR 134
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 110 bits (276), Expect = 8e-26
Identities = 100/355 (28%), Positives = 161/355 (45%), Gaps = 61/355 (17%)
Query: 189 VLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLL-TGQRVLDSLFPCVLGGTTAIP 247
VL D E + P+ +P P E+L +L TG +V+D L P + GG +
Sbjct: 98 VLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLF 157
Query: 248 GAFGCGKTVISQAL--------SKYSNSDVIVYVGCGER---GN----EMAEVLRDFPEL 292
G G GKTV+ Q L S V+ G GER GN EM +
Sbjct: 158 GGAGVGKTVLIQELIHNIAQEHGGIS-----VFAGVGERTREGNDLYHEMKD-------- 204
Query: 293 TIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDM-GYNVSMMADSTSR 351
++ +T +V N P AR TG+T++EYFRD G + + D+ R
Sbjct: 205 --------SGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFR 256
Query: 352 WAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPP 411
+ +A E+S L MP+ GY L + ER +GS++ + A+ P
Sbjct: 257 FTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITSTA-------KGSITSIQAIYVP 309
Query: 412 GGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFV 471
D++DP + T + L++KLA+ +P+++ L+S S RAL PE V
Sbjct: 310 ADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTS---RALA-------PEIV 359
Query: 472 -----PLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQN 521
+ KV++ L+ ++L +I+ ++G L++ DK+ + A+ ++ FL QN
Sbjct: 360 GEEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQ-FFLSQN 413
Score = 38.1 bits (89), Expect = 0.009
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 18 GFVYAVSGPVVTAEKMSGS--AMYELVRV---------GYFELVGEIIRLEGD--MATIQ 64
G V V GPVV + +G A+Y +++ +L E+ GD + TI
Sbjct: 4 GRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIA 63
Query: 65 VYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 105
+ T G+ G V+ TG P+SV +G LG +F+ + P+
Sbjct: 64 M-ASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPI 103
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 102 bits (257), Expect = 2e-23
Identities = 94/331 (28%), Positives = 149/331 (45%), Gaps = 42/331 (12%)
Query: 207 WPVRQPRPVTEKLPANYPLL-TGQRVLDSLFPCVLGGTTAIPGAFGCGKTV--------I 257
P+ + P +L + TG +V++ L P GG + G G GKTV I
Sbjct: 130 SPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI 189
Query: 258 SQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPEL-TIEVDGVTESIMKRTTLVANTSNM 316
++A S V+ G GER E ++ + E I + ES + LV N
Sbjct: 190 AKAHGGVS-----VFGGVGERTREGNDLYMEMKESGVINEQNIAES---KVALVYGQMNE 241
Query: 317 PVAAREASIYTGITLSEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAY 375
P AR T +T++EYFRD+ +V + D+ R+ +A E+S L MP+ GY
Sbjct: 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPT 301
Query: 376 LGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDK 435
L + S ER K EGS++ + AV P D +DP + T + L +
Sbjct: 302 LSTEMGSLQERITSTK-------EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSR 354
Query: 436 KLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFV-----PLRTKVKEILQEEEDLSEI 490
LA + +P+++ L S S L P V + +VKE LQ ++L +I
Sbjct: 355 GLAAKGIYPAVDPLDSTS---TMLQ-------PRIVGEEHYEIAQRVKETLQRYKELQDI 404
Query: 491 VQLVGKASLAESDKITLEVAKLLKDDFLQQN 521
+ ++G L+E D++T+ A+ ++ FL Q
Sbjct: 405 IAILGLDELSEEDRLTVARARKIE-RFLSQP 434
Score = 42.7 bits (101), Expect = 3e-04
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 12/128 (9%)
Query: 2 STALGKMADEDREGRFGFVYAVSGPVVTAEKMSGS--AMYELVRVGYFELVGEIIRL--- 56
T + G + + GPV+ G +Y + V + G+ + +
Sbjct: 5 PTTSDPGVSTLEKKNLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCE 64
Query: 57 ------EGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINE 110
+ + + T G+T G V+ TG PLSV +G LG IF+ + P+ ++
Sbjct: 65 VQQLLGNNRVRAVAM-SATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRP 123
Query: 111 LSQSIYIP 118
+ P
Sbjct: 124 VDTRTTSP 131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 94.1 bits (233), Expect = 4e-20
Identities = 86/521 (16%), Positives = 154/521 (29%), Gaps = 148/521 (28%)
Query: 176 YIAPAGNYKVDEVVLETEFDGEKSK-YTMVQVWP---VRQPRPVTEKLPANYPLLTGQRV 231
P+ + + ++ + Y QV+ V + +P KL ++
Sbjct: 102 QRQPSMMTR--------MYIEQRDRLYNDNQVFAKYNVSRLQPYL-KL---------RQA 143
Query: 232 LDSLFPCVLGGTTAIPGAFGCGKTV-ISQALSKYS----NSDVIVYVGCGERGNEMAEVL 286
L L P I G G GKT Y I ++ N VL
Sbjct: 144 LLELRP---AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC-NSPETVL 199
Query: 287 RDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGY------ 340
+L ++D T+ ++SN+ + L + Y
Sbjct: 200 EMLQKLLYQIDP------NWTSRSDHSSNIKLRIHSIQAE----LRRLLKSKPYENCLLV 249
Query: 341 --NVSMMADS--------------TSRWAEALREISG----RLAEMPADSGY-PAYLGAR 379
NV ++ T+R+ + +S ++ P + +
Sbjct: 250 LLNVQ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 380 LASFYE-RAG---RVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFW---G 432
L + + R R NP +SI+ G D W
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPR---RLSIIAESIRDGLATWD------------NWKHVN 351
Query: 433 LDKKLAQRKHFPSINWLIS--YSKYMRALDDFYDKNHPEFVPLRTKVKEIL---QEEEDL 487
DK + S+N L Y K L F P + T + ++ + D+
Sbjct: 352 CDKLTTIIES--SLNVLEPAEYRKMFDRLSVF-----PPSAHIPTILLSLIWFDVIKSDV 404
Query: 488 SEIVQLVGKASLAESDK---------ITLEVAKLLKDDF-LQQ---NSYSPYDRFCPFYK 534
+V + K SL E I LE+ L++++ L + + Y+ F
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 535 TVGMLRNMIAFYDMSRHAVESTAQSE----------------NKI-----TWSVIRDSMS 573
L + + H +++ E KI W+ S+
Sbjct: 465 IPPYLDQYFYSH-IGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA-SGSIL 521
Query: 574 NILYQLSSMKFKDPVKDGEAKTRADFDQLYEDIQQAFRNLE 614
N L QL +K + D + K +++L I +E
Sbjct: 522 NTLQQLK--FYKPYICDNDPK----YERLVNAILDFLPKIE 556
Score = 43.7 bits (102), Expect = 2e-04
Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 58/192 (30%)
Query: 433 LDKKLAQRKHFPSINWLISYSKYMRA-LDDF---YDKNH-PEFV-PLRTK--VKEILQEE 484
+D + + ++ Y + D F +D + + +K + I+ +
Sbjct: 7 MDFETGEHQY--------QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 485 EDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIA 544
+ +S ++L +L + E+ + ++ L+ N Y
Sbjct: 59 DAVSGTLRLFW--TLLSKQE---EMVQKFVEEVLRIN----YK----------------- 92
Query: 545 FYDMSRHAVESTAQSENKITWSVIRDSMSNILYQLSSMKF-KDPVKDGEAKTRADFDQLY 603
+ MS E S + RD + N + F K V +R Q Y
Sbjct: 93 -FLMSPIKTEQRQPSMMTRMYIEQRDRLYN-----DNQVFAKYNV------SRL---QPY 137
Query: 604 EDIQQAFRNLED 615
++QA L
Sbjct: 138 LKLRQALLELRP 149
Score = 30.2 bits (67), Expect = 2.3
Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 51/143 (35%)
Query: 49 LVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVE-LGPGILGSIFDGIQRPLKD 107
++ E IR +AT ++ + D + + S+ L P +FD
Sbjct: 332 IIAESIR--DGLATWDNWKHVNC----DKLTTIIE-SSLNVLEPAEYRKMFD-------- 376
Query: 108 INELSQSIYIPKGVNIPALNRDVSW----EFNPMNLKIGSHITGGDQYGLV--------- 154
LS ++ P +IP + + W + + M + H +Y LV
Sbjct: 377 --RLS--VF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-----KYSLVEKQPKESTI 426
Query: 155 --H----------ENTLVKHKMI 165
EN H+ I
Sbjct: 427 SIPSIYLELKVKLENEYALHRSI 449
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 91.9 bits (229), Expect = 7e-20
Identities = 95/338 (28%), Positives = 149/338 (44%), Gaps = 59/338 (17%)
Query: 207 WPVRQPRPVTEKLPANYPLL-TGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQAL---- 261
+ P ++ +L TG +V+D L P GG + G G GKTV+ L
Sbjct: 118 AAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 177
Query: 262 ----SKYSNSDVIVYVGCGER---GN----EMAEVLRDFPELTIEVDGV--TESIMKRTT 308
YS V+ G GER GN EM E GV + +
Sbjct: 178 AKAHGGYS-----VFAGVGERTREGNDLYHEMIE------------SGVINLKDATSKVA 220
Query: 309 LVANTSNMPVAAREASIYTGITLSEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMP 367
LV N P AR TG+T++EYFRD G +V + D+ R+ +A E+S L +P
Sbjct: 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 280
Query: 368 ADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIV 427
+ GY L + + ER K +GS++ V A+ P D +DP + T +
Sbjct: 281 SAVGYQPTLATDMGTMQERITTTK-------KGSITSVQAIYVPADDLTDPAPATTFAHL 333
Query: 428 QVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFV-----PLRTKVKEILQ 482
L + +A+ +P+++ L S S R +D P V + V++ILQ
Sbjct: 334 DATTVLSRAIAELGIYPAVDPLDSTS---RIMD-------PNIVGSEHYDVARGVQKILQ 383
Query: 483 EEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQ 520
+ + L +I+ ++G L+E DK+T+ A+ ++ FL Q
Sbjct: 384 DYKSLQDIIAILGMDELSEEDKLTVSRARKIQ-RFLSQ 420
Score = 39.2 bits (92), Expect = 0.003
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 14 EGRFGFVYAVSGPVVTAEKMSG-SAMYELVRVGYFE--LVGEIIRLEGD--MATIQVYEE 68
G + AV G VV + G + + V E LV E+ + G+ + TI + +
Sbjct: 11 GATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAM-DG 69
Query: 69 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELSQSIYIP 118
T G+ G VL +G P+ + +GP LG I + I P+ + + +
Sbjct: 70 TEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAA 119
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 65.4 bits (160), Expect = 3e-11
Identities = 77/260 (29%), Positives = 116/260 (44%), Gaps = 35/260 (13%)
Query: 208 PVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266
+ P P + + PL TG +D++ P G I G GKT + A N
Sbjct: 129 LIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAV--ATDTILN 186
Query: 267 ---SDVI-VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322
+VI VYV G++ + +A+V+ + G M+ T +VA T++ P +
Sbjct: 187 QQGQNVICVYVAIGQKASSVAQVVT-----NFQERGA----MEYTIVVAETADSPATLQY 237
Query: 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGAR 379
+ YTG L+EYF + ++ D S+ A+A R++S L P YP YL +R
Sbjct: 238 LAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSR 297
Query: 380 LASFYERAGRVKCLGNPDR-EGSVSIVGAVSPPGGDFSD--P--VTSATLGIVQVFWGLD 434
L ERA ++ + EGS++ + V GD S P V S T G Q+F L
Sbjct: 298 L---LERAAKL----SSLLGEGSMTALPIVETQAGDVSAYIPTNVISITDG--QIF--LS 346
Query: 435 KKLAQRKHFPSINWLISYSK 454
L P+IN IS S+
Sbjct: 347 ADLFNAGIRPAINVGISVSR 366
Score = 36.5 bits (85), Expect = 0.022
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 36 SAMY-ELVRVGYFE--LVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPG 92
M ELV FE +G + LE + + + + + G V TG+ + +
Sbjct: 47 EVMAGELVE---FEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEA 103
Query: 93 ILGSIFDGIQRPL 105
LG + + + +P+
Sbjct: 104 YLGRVINALAKPI 116
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 65.0 bits (159), Expect = 3e-11
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 22/191 (11%)
Query: 208 PVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266
P+ P P V ++ + PL TG + +DS+ P G I G GKT I A+ N
Sbjct: 128 PIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTI--AIDTIIN 185
Query: 267 ---SDVI-VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322
DVI +YV G++ + +A V+ T+ + T +V +++ P
Sbjct: 186 QKGQDVICIYVAIGQKQSTVAGVVE-----TLRQHDA----LDYTIVVTASASEPAPLLY 236
Query: 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGAR 379
+ Y G + EYF G + ++ D S+ A A RE+S L P YP YL +R
Sbjct: 237 LAPYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSR 296
Query: 380 LASFYERAGRV 390
L ERA ++
Sbjct: 297 L---LERAAKL 304
Score = 36.9 bits (86), Expect = 0.018
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 36 SAMY-ELVRVGYFE--LVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPG 92
M EL+ FE ++G LE D + + + + G V RTG+ + V +G
Sbjct: 46 KVMAGELLE---FENGVMGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEA 102
Query: 93 ILGSIFDGIQRPL 105
+LG + + + +PL
Sbjct: 103 LLGRVVNPLGQPL 115
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 64.6 bits (158), Expect = 4e-11
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 208 PVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266
P+ P V + P + PL TG + +DS+ P G I G GKT I A+ N
Sbjct: 141 PIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAI--AIDTIIN 198
Query: 267 ---SDVI-VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322
V +YV G++ + +A ++ + G M+ TT+V +++ P + +
Sbjct: 199 QKGQGVYCIYVAIGQKKSAIARIID-----KLRQYGA----MEYTTVVVASASDPASLQY 249
Query: 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGAR 379
+ Y G + EYF G + ++ D S+ A A R++S + P YP YL +R
Sbjct: 250 IAPYAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSR 309
Query: 380 LASFYERAGRV 390
L ERA R+
Sbjct: 310 L---LERAVRL 317
Score = 38.8 bits (91), Expect = 0.005
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 36 SAMY-ELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGIL 94
M ELV + G LE D I + E + G V R + + V +G +L
Sbjct: 58 KVMVSELVEFVETGVKGVAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELL 117
Query: 95 GSIFDGIQRPL 105
G + + + PL
Sbjct: 118 GRVVNPLGEPL 128
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 64.6 bits (158), Expect = 4e-11
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 26/197 (13%)
Query: 208 PVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVI--------- 257
V P + ++ P+ TG + +DSL P G I G GKT I
Sbjct: 128 RVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK 187
Query: 258 SQALSKYSNSDVI-VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNM 316
+ +YV G++ + +A++++ + MK T +V+ T++
Sbjct: 188 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVK-----RLTDADA----MKYTIVVSATASD 238
Query: 317 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA-- 374
+ + Y+G ++ EYFRD G + ++ D S+ A A R++S L P YP
Sbjct: 239 AAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDV 298
Query: 375 -YLGARLASFYERAGRV 390
YL +RL ERA ++
Sbjct: 299 FYLHSRL---LERAAKM 312
Score = 36.5 bits (85), Expect = 0.025
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 36 SAMY-ELVRVGYFE--LVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPG 92
+ E+V F L G + LE D + V+ + GD V RTG + V +G
Sbjct: 46 NVQAEEMVE---FSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEE 102
Query: 93 ILGSIFDGIQRPL 105
+LG + D + +
Sbjct: 103 LLGRVVDALGNAI 115
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 63.1 bits (154), Expect = 1e-10
Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 22/191 (11%)
Query: 208 PVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSN 266
V P V E+ + P+ TG + +DS+ P G I G GKT + A+ N
Sbjct: 128 AVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTAL--AIDAIIN 185
Query: 267 ---SDVI-VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAARE 322
S + +YV G++ + ++ V+R +E G + T +V T++ A +
Sbjct: 186 QRDSGIKCIYVAIGQKASTISNVVR-----KLEEHGA----LANTIVVVATASESAALQY 236
Query: 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGAR 379
+ Y G + EYFRD G + ++ D S+ A A R+IS L P +P YL +R
Sbjct: 237 LAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSR 296
Query: 380 LASFYERAGRV 390
L ERA RV
Sbjct: 297 L---LERAARV 304
Score = 36.1 bits (84), Expect = 0.033
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 39 YELVRVGYFELV-------GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGP 91
+ L E++ + LE D V + + G V TG+ L V +G
Sbjct: 42 HGLADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGR 101
Query: 92 GILGSIFDGIQRPL 105
G+LG + + + P+
Sbjct: 102 GLLGRVVNTLGAPI 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 2e-08
Identities = 67/392 (17%), Positives = 114/392 (29%), Gaps = 144/392 (36%)
Query: 318 VAAREASIYT-----GITLSEYF---RDMGYNV--SMMADSTSRWAEALREISGRLAEMP 367
V A + G T +YF RD+ Y ++ D AE L E L
Sbjct: 149 VGEGNAQLVAIFGGQGNT-DDYFEELRDL-YQTYHVLVGDLIKFSAETLSE----LIRTT 202
Query: 368 ADSG--YP------------------AYLGARLASF----------YERAGRVKCLG-NP 396
D+ + YL + S Y ++ LG P
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL--LGFTP 260
Query: 397 ----DREGSVS-----IVGAV----SPPGGDFSDPVTSATLGIVQVFW-GLDKKLAQRKH 442
+ +V AV + F V A I +F+ G+
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA---ITVLFFIGVR---CYE-A 313
Query: 443 FPSINWLISYSKYMRALDDFYDKNHPEFVP---LRTKVKEILQEEEDLSEIVQLVGKASL 499
+P+ + + S L+D + + E VP L + + QE+ + + V L
Sbjct: 314 YPNTS--LPPS----ILEDSLE--NNEGVPSPMLS--ISNLTQEQ--VQDYVNKTNS-HL 360
Query: 500 AESDKI-----------------------TLEVAKLLKDDFLQQNSYSPYD--------R 528
++ L + K L Q S P+ R
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SRIPFSERKLKFSNR 419
Query: 529 F----CPF---Y--KTVGMLRNMIAFYDMSRHAVESTAQSENKI------TWSVIRDSMS 573
F PF ++ D+ ++ V A + +I S +R
Sbjct: 420 FLPVASPFHSHLLVPASDLINK-----DLVKNNVSFNA-KDIQIPVYDTFDGSDLRVLSG 473
Query: 574 NILYQLSSMKFKDPVK-DGEAKTRA----DFD 600
+I ++ + PVK + + +A DF
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Score = 49.7 bits (118), Expect = 3e-06
Identities = 36/208 (17%), Positives = 72/208 (34%), Gaps = 70/208 (33%)
Query: 448 WLISYSKYMRA--LDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGK-----ASLA 500
L+ + + A L + ++K PE P ++E + +LVGK +SL
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPE--PTE----GFAADDEPTTP-AELVGKFLGYVSSLV 72
Query: 501 ESDKI--TLEVAKLL----KDDFLQQN------SYSPYDRFCPFYKTVGMLRNMIAFYDM 548
E K+ +V L ++ +L+ N + + KT +++N +
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN---YI-- 127
Query: 549 SRHAVESTAQSENKITWSVIRDSMSNILYQLSSMKFKDPVKDGEAKTRADF--------- 599
A + +K + S L++ V +G A+ A F
Sbjct: 128 --TARIMAKRPFDKKSNS--------ALFR--------AVGEGNAQLVAIFGGQGNTDDY 169
Query: 600 -DQL---YED--------IQQAFRNLED 615
++L Y+ I+ + L +
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSE 197
Score = 36.2 bits (83), Expect = 0.036
Identities = 54/314 (17%), Positives = 89/314 (28%), Gaps = 123/314 (39%)
Query: 258 SQA----LSKYSNSDVI--VYVGCGER---------GNEMAEVLRDFP-ELTIEVDGVTE 301
SQ + Y S V+ R G + +++ + P LTI G
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVW----NRADNHFKDTYGFSILDIVINNPVNLTIHFGG--- 1678
Query: 302 SIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISG 361
G + E + M + + D + + +EI+
Sbjct: 1679 ------------------------EKGKRIRENYSAMIFE--TIVDGKLKTEKIFKEINE 1712
Query: 362 RLAEMP--ADSGY--------PAYLGARLASFY--ERAGRVKC--------LGNPDREGS 401
++ G PA A+F + G + LG E +
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG----EYA 1768
Query: 402 --VSIVGAVSPPGGDFSDPVTSATLGIVQVFW-G-LDKKLAQRKHFPSINWLISYSKYMR 457
S+ +S V + VF+ G + R N Y M
Sbjct: 1769 ALASLADVMS-----IESLVE---V----VFYRGMTMQVAVPRDELGRSN----YG--MI 1810
Query: 458 ALDDFYDKNHPEFV-------PLRTKVKEILQEEEDLSEIV-------QLV--G-KASLA 500
A++ P V L+ V+ + + L EIV Q V G +L
Sbjct: 1811 AIN-------PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL- 1862
Query: 501 ESDKITLEVAKLLK 514
D +T V +K
Sbjct: 1863 --DTVT-NVLNFIK 1873
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel,
licmsn, substrate specificity, acyltransferase,
amino-acid biosynthesis; 2.00A {Leptospira interrogans}
PDB: 3blf_A 3bli_A*
Length = 337
Score = 33.7 bits (78), Expect = 0.17
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 274 GCGER-GN-EMAEV---LRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAA 320
G GER GN + + + D ++ +I + + LV S ++A
Sbjct: 248 GLGERAGNTPLEALVTTIHDKSNSKTNIN--EIAITEASRLVEVFSGKRISA 297
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural
genomics, midwest CEN structural genomics (MCSG),
PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis}
PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Length = 217
Score = 30.8 bits (69), Expect = 1.1
Identities = 7/76 (9%), Positives = 22/76 (28%)
Query: 342 VSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGS 401
+++ + + L+ + + L ++ R L + +G
Sbjct: 22 LNLHRNKINYLIGETMARMTSLSIAIDRPVDIKKMQSILEKTFDSEPRFSGLYFLNAKGD 81
Query: 402 VSIVGAVSPPGGDFSD 417
V+ + +D
Sbjct: 82 VTASTTELKTKVNLAD 97
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.6
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 354 EALREISGRLAEMPADSGYPAYLGARLA 381
+AL+++ L DS PA LA
Sbjct: 20 QALKKLQASLKLYADDSA-PA-----LA 41
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 29.8 bits (67), Expect = 1.8
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 10/93 (10%)
Query: 431 WGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEI 490
+ D H P I L+ + Y + + PL LQ I
Sbjct: 92 FSFDAHDPCVFHSPDITGLLEH--YKDPSACMFFEPLLS-TPLIRTFPFSLQHICRTV-I 147
Query: 491 VQLVGKASLAESDKITLEVAKLLKDDFLQQNSY 523
+ L + +K +L++ Y
Sbjct: 148 CNCTTYDGIDA-----LPIPSSMK-LYLKEYHY 174
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 29.9 bits (67), Expect = 1.8
Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 9/144 (6%)
Query: 246 IPGAFGCGKTVISQALS-KYSNSDVIVYVGCGERGNEMAEVLR-DFPELTIEVDGVTESI 303
I G FG GKT + L + S V G+ ++ D E + + + +++
Sbjct: 10 INGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDAL 69
Query: 304 MKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRL 363
+ A +PV+ + + + + +D G +V + E RL
Sbjct: 70 QYASREAAGPLIVPVSISDTARHRRLM--SGLKDRGLSVHHFTLIAPL--NVVLE---RL 122
Query: 364 AEMPADSGYPAYLGARLASFYERA 387
+ RL
Sbjct: 123 RRDGQPQVNVGTVEDRLNELRGEQ 146
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 30.0 bits (68), Expect = 3.3
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 223 YPLLTGQRVLDSL---FPCVLGGTTAIPGAFGCGK-TVIS 258
YP ++L L G T A+ G GCGK T +
Sbjct: 397 YPSRKEVQILKGLNLKVKS--GQTVALVGNSGCGKSTTVQ 434
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; 2.00A {Desulfitobacterium hafniense}
Length = 261
Score = 29.2 bits (66), Expect = 3.4
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 13/57 (22%)
Query: 319 AAREASIYTGI------TLSEYFRDMGYN-------VSMMADSTSRWAEALREISGR 362
AA + G + + G V+ + T++ + ++E+ G
Sbjct: 203 AADRQGVVKGFFTAADAAKMGWAVERGAQMLLWSGDVAALQTYTAKGVKTIKELPGF 259
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment,
peptidoglycan-binding, protein,peptide binding protein;
1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Length = 123
Score = 28.3 bits (64), Expect = 3.4
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 280 NEMAEVLRDFPELTIEVDGVTESI 303
++AE L ++P T ++G T++
Sbjct: 34 AKVAEKLSEYPNATARIEGHTDNT 57
>3oon_A Outer membrane protein (TPN50); protein structure initiative,
PSI-2, structural genomics, MI center for structural
genomics, MCSG; 1.79A {Borrelia burgdorferi}
Length = 123
Score = 28.3 bits (64), Expect = 3.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 280 NEMAEVLRDFPELTIEVDGVTESI 303
+ +A++L F + I ++G TE
Sbjct: 37 DLIAKLLEKFKKNNILIEGHTEQF 60
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural
genomics, PSI-2, protein structure initiative; 2.00A
{Methanococcus maripaludis S2}
Length = 345
Score = 29.4 bits (66), Expect = 3.4
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 5 LGKMADEDREGRFGFVYAVSGPVVTAEKMSGSAMYELVRVGY 46
+ ++ +E ++ G + V GP + G A+ ++V +GY
Sbjct: 123 MHEIREEYKKTGTGGIAIVGGPAIIHTG-GGPALAKMVELGY 163
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural
genomics, protein structure initiative; 1.85A
{Clostridium acetobutylicum atcc 824}
Length = 272
Score = 29.0 bits (65), Expect = 4.0
Identities = 5/32 (15%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 268 DVIVYVGCGERGN-----EMAEVLRDFPELTI 294
+ +++ E+AE+ + FP++ +
Sbjct: 144 SLPIWIHAFNPLVLQDIKEIAELCKAFPKVPV 175
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics,
translocase, northeast structural genomics consortium,
PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Length = 339
Score = 29.1 bits (64), Expect = 4.0
Identities = 27/190 (14%), Positives = 62/190 (32%), Gaps = 19/190 (10%)
Query: 426 IVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRT-------KVK 478
+ Q W D L Q HF S + K + ++ D + E L V
Sbjct: 152 VTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVA 211
Query: 479 EILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDF--LQQNSYSPYDRFCPFYKTV 536
++ ++V K S+ + + V +++ P R ++ +
Sbjct: 212 RFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVI 271
Query: 537 GMLRN-------MIAFYDMSRHAVESTAQSENKITWSVIRDSMSNI-LYQLSSMKFKDPV 588
G ++ + ++ ++ A + +++ S + + Q V
Sbjct: 272 GDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVD--V 329
Query: 589 KDGEAKTRAD 598
K+ E + +D
Sbjct: 330 KEAETDSDSD 339
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural
genomics, protein structure initiative, hypothetical
protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa}
SCOP: c.1.17.2 d.41.2.2
Length = 408
Score = 29.2 bits (66), Expect = 4.3
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 331 LSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPA----DSGYPAYLGARLASFYER 386
L + R+ + + LR+ A++ DSG P + + Y +
Sbjct: 247 LDCWVREYRGLLGIALTDCITTDAFLRDFDLYFAKLFDGLRHDSGDPLLWAEKTIAHYLK 306
Query: 387 AG 388
G
Sbjct: 307 LG 308
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Length = 93
Score = 27.6 bits (61), Expect = 4.4
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 447 NWLISYSKYMRALDDF-----YDKNHPEFVPLRTKVKEILQEEEDLSEIVQ 492
+ + Y +D K + LRTK+ + E++ + +
Sbjct: 30 RYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLD 80
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase,
peptidoglycan deacetylase, metalloenzyme, D275N mutant,
hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae}
SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Length = 431
Score = 28.8 bits (64), Expect = 5.3
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 410 PPGGDFSDPVTSATLGIVQVFWGLD 434
PP G +D + ++ L + + W +D
Sbjct: 333 PPYGAITDDIRNS-LDLSFIMWDVD 356
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Length = 240
Score = 28.4 bits (64), Expect = 5.6
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 410 PPGGDFSDPV--TSATLGIVQVFWGLD 434
PP G FS+ V + LG VFW +
Sbjct: 141 PPRGVFSEYVLKETKRLGYQTVFWSVA 167
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia
pestis}
Length = 407
Score = 28.9 bits (65), Expect = 6.1
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 331 LSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPA----DSGYPAYLGARLASFYER 386
L + + + + LR+ A DSG P G + + YE+
Sbjct: 242 LQVWLDEYPNQLGIALTDCITMDAFLRDFDLAFANRYQGLRHDSGDPIEWGEKAIAHYEK 301
Query: 387 AG 388
G
Sbjct: 302 LG 303
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene
therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 28.6 bits (63), Expect = 6.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 237 PCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYV 273
P +L I G G GKT +Q L + D IVYV
Sbjct: 2 PTLL--RVYIDGPHGMGKTTTTQLLVALGSRDDIVYV 36
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology,
protein structure initiati midwest center for structural
genomics; 1.90A {Klebsiella pneumoniae subsp} PDB:
3qwt_A
Length = 382
Score = 28.9 bits (64), Expect = 6.2
Identities = 18/112 (16%), Positives = 28/112 (25%), Gaps = 21/112 (18%)
Query: 331 LSEYFRDMGYNVSMMADSTSRWAEAL------REISGRLAEMPADSGYPAYLGARL---- 380
L ++ D + W L E S A Y R
Sbjct: 261 LITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASA-----TAGFAYGILKAVRKRYVG 315
Query: 381 ASFYERAGRVK--CLGNPDREGSVSIVGAVSPPGGDF----SDPVTSATLGI 426
+ A + + N +G + + G D P+TS G
Sbjct: 316 QHYAGVAEKAIRGIVQNISPQGELLQTSFGTGMGSDLDFYRQIPLTSMPYGQ 367
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 28.4 bits (64), Expect = 6.6
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 565 WSVIRDSMSNILYQLSSMKFKDPVKD-GEAKTRADFDQLYEDIQQAFRNL 613
S + N+ +Q ++M+ KD G T D I+ A+R L
Sbjct: 8 SSGVDLGTENLYFQSNAMELKDYYAILGVQPT-DDLK----TIKTAYRRL 52
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME
palmitate, transmembrane, structural genomics, PSI-2;
NMR {Escherichia coli}
Length = 149
Score = 27.6 bits (62), Expect = 6.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 280 NEMAEVLRDFPELTIEVDGVTESI 303
+A VL+++P+ + V G T+S
Sbjct: 54 TGVAMVLKEYPKTAVNVIGYTDST 77
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 28.1 bits (62), Expect = 7.0
Identities = 24/161 (14%), Positives = 41/161 (25%), Gaps = 21/161 (13%)
Query: 245 AIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIM 304
I +G G ++ + L++ I + D +L E V E
Sbjct: 18 TIEREYGSGGRIVGKKLAEELG---IHFYD------------DDILKLASEKSAVGEQFF 62
Query: 305 KRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALRE---ISG 361
+ A + + I S + S A E G
Sbjct: 63 RLADEKAGNNLLYRLGGGRKIDLHSKPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVG 122
Query: 362 RLAEM--PADSGYPAYLGARL-ASFYERAGRVKCLGNPDRE 399
R A D + + ++ RV + D E
Sbjct: 123 RAAGYVLDQDEDIERLIRIFVYTDKVKKVQRVMEVDCIDEE 163
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase,
bacterial cell WALL, carbohydrate esterase; 1.7A
{Bacillus anthracis} SCOP: c.6.2.3
Length = 247
Score = 28.1 bits (63), Expect = 7.4
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 410 PPGGDFSDPV--TSATLGIVQVFWGLD 434
PP G FS+ + +G VFW L
Sbjct: 153 PPRGVFSERTLALTKEMGYYNVFWSLA 179
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 7.5
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 10/37 (27%)
Query: 457 RALDDFY-------DKNHPEFVPLRTKVKEILQEEED 486
+ L+++ +KN R K Q+ +
Sbjct: 118 KDLEEWNQRQSEQVEKNKIN---NRIADKAFYQQPDA 151
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4
carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum}
SCOP: c.6.2.3
Length = 254
Score = 28.1 bits (63), Expect = 7.6
Identities = 5/27 (18%), Positives = 6/27 (22%), Gaps = 2/27 (7%)
Query: 410 PPGGDFSDPV--TSATLGIVQVFWGLD 434
P LG + LD
Sbjct: 143 APYLSCDAGCQGDLGGLGYHIIDTNLD 169
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate,
rossmann fold, alpha-aminoadipate pathway, fungal lysine
biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB:
2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Length = 394
Score = 28.5 bits (63), Expect = 7.6
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 315 NMPVA-AREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSG 371
++P REAS + L + + W A + A + S
Sbjct: 341 HLPSLLPREASEFFSHDLLPSLELLPQR-----KTAPVWVRAKKLFDRHCARVKRSSR 393
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A
{Streptomyces lividans} SCOP: c.6.2.3
Length = 195
Score = 27.9 bits (63), Expect = 7.7
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 410 PPGGDFSDPV--TSATLGIVQVFWGLD 434
PP G+ + + A G+ +V W +D
Sbjct: 101 PPYGETNATLRSVEAKYGLTEVIWDVD 127
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 8.6
Identities = 49/296 (16%), Positives = 85/296 (28%), Gaps = 88/296 (29%)
Query: 188 VVLETEFDGEKSKYTMVQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIP 247
V +ET + + + + ++P L + + + P L G +
Sbjct: 758 VSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPELKPYKQVKQIAPAELEGLLDL- 816
Query: 248 GAFGCGKTVISQALSKYSNSDVIVYVGCGER---GN-----EMAEVLRDFPELTIEVDGV 299
VIV G E G+ EM E F E ++E G
Sbjct: 817 -------------------ERVIVVTGFAEVGPWGSARTRWEM-EA---FGEFSLE--GC 851
Query: 300 TE--SIMK-------------RTTLVANTSNMPVAARE-ASIY-------TGITL--SEY 334
E IM T V + + PV ++ + Y +GI L E
Sbjct: 852 VEMAWIMGFISYHNGNLKGRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPEL 911
Query: 335 FRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLA-SFYERAG---RV 390
F GYN E ++E+ + P A F + G +
Sbjct: 912 FN--GYNPE--------KKEMIQEVIVE------EDLEPFEASKETAEQFKHQHGDKVDI 955
Query: 391 KCLGNPDREGSVSIVGAVSPPGGDFSD-PVTSATLGIVQV-F----WGLDKKLAQR 440
+ E SV ++ + A G + + +G+ + +
Sbjct: 956 FEIPETG-EYSVKLLKGATLYIPKALRFDRLVA--GQIPTGWNAKTYGISDDIISQ 1008
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 27.9 bits (62), Expect = 9.6
Identities = 15/80 (18%), Positives = 21/80 (26%), Gaps = 5/80 (6%)
Query: 323 ASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLAS 382
AS+ Y V + R A L E+ A G +
Sbjct: 225 ASLDASFPEHHLRDLALYLVERNLEHADRRAHELGEV----AATLCSVGVEPLVAEAGYR 280
Query: 383 FYERAGRVKCLGNPDREGSV 402
R +V+ R G V
Sbjct: 281 RLTRVAQVR-AALKQRPGDV 299
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.391
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,610,129
Number of extensions: 608721
Number of successful extensions: 1543
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1476
Number of HSP's successfully gapped: 79
Length of query: 615
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 516
Effective length of database: 3,937,614
Effective search space: 2031808824
Effective search space used: 2031808824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)