RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13480
(615 letters)
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 251 bits (642), Expect = 1e-79
Identities = 70/263 (26%), Positives = 115/263 (43%), Gaps = 15/263 (5%)
Query: 197 EKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKT 255
E+ Q + P E L+TG +V+D L P GG + G G GKT
Sbjct: 23 ERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKT 82
Query: 256 VISQAL---SKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVAN 312
V+ L ++ V+ G GER E ++ + E + + + LV
Sbjct: 83 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVIN---LKDATSKVALVYG 139
Query: 313 TSNMPVAAREASIYTGITLSEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSG 371
N P AR TG+T++EYFRD G +V + D+ R+ +A E+S L +P+ G
Sbjct: 140 QMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVG 199
Query: 372 YPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFW 431
Y L + + ER ++GS++ V A+ P D +DP + T +
Sbjct: 200 YQPTLATDMGTMQERITTT-------KKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 252
Query: 432 GLDKKLAQRKHFPSINWLISYSK 454
L + +A+ +P+++ L S S+
Sbjct: 253 VLSRAIAELGIYPAVDPLDSTSR 275
Score = 28.2 bits (63), Expect = 2.7
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 85 LSVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALN 127
+ + +GP LG I + I P+ + + + ++ A
Sbjct: 1 IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAA--IHAEAPE 41
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 246 bits (630), Expect = 6e-78
Identities = 59/263 (22%), Positives = 111/263 (42%), Gaps = 23/263 (8%)
Query: 207 WPV-RQPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQAL---- 261
V + + ++ P+ TG + +DSL P G I G GKT I+
Sbjct: 33 RRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ 92
Query: 262 ------SKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSN 315
+ +YV G++ + +A++++ + MK T +V+ T++
Sbjct: 93 KRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD---------ADAMKYTIVVSATAS 143
Query: 316 MPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAY 375
+ + Y+G ++ EYFRD G + ++ D S+ A A R++S L P YP
Sbjct: 144 DAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGD 203
Query: 376 LGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDK 435
+ + ERA ++ + GS++ + + GD S + + + I L+
Sbjct: 204 VFYLHSRLLERAAKMN---DAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLET 260
Query: 436 KLAQRKHFPSINWLISYSKYMRA 458
+L + P+IN +S S+ A
Sbjct: 261 ELFYKGIRPAINVGLSVSRVGSA 283
Score = 27.8 bits (62), Expect = 3.8
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 86 SVELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALN 127
V +G +LG + D + + + V + A
Sbjct: 2 DVPVGEELLGRVVDALGNAIDGKGPIGSKARRR--VGLKAPG 41
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 214 bits (546), Expect = 1e-65
Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 16/268 (5%)
Query: 194 FDGEKSKYTMVQVWPVRQPRP-VTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGC 252
DG + + T + + P P + + PL TG +D++ P G I G
Sbjct: 20 IDG-RGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQT 78
Query: 253 GKTVISQ--ALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLV 310
GKT ++ L++ + + VYV G++ + +A+V+ +F E M+ T +V
Sbjct: 79 GKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQE---------RGAMEYTIVV 129
Query: 311 ANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADS 370
A T++ P + + YTG L+EYF + ++ D S+ A+A R++S L P
Sbjct: 130 AETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGRE 189
Query: 371 GYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVF 430
YP + + ERA ++ L GS++ + V GD S + + + I
Sbjct: 190 AYPGDVFYLHSRLLERAAKLSSLLGE---GSMTALPIVETQAGDVSAYIPTNVISITDGQ 246
Query: 431 WGLDKKLAQRKHFPSINWLISYSKYMRA 458
L L P+IN IS S+ A
Sbjct: 247 IFLSADLFNAGIRPAINVGISVSRVGSA 274
Score = 26.8 bits (59), Expect = 6.9
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 87 VELGPGILGSIFDGIQRPLKDINELSQSIYIPKGVNIPALN 127
+ + LG + + + +P+ E++ S + PA
Sbjct: 2 IPVSEAYLGRVINALAKPIDGRGEITASESRL--IESPAPG 40
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 175 bits (444), Expect = 9e-51
Identities = 47/286 (16%), Positives = 102/286 (35%), Gaps = 22/286 (7%)
Query: 211 QPRPVTEKLPANYPLLTGQRVLDSLFPCVLGGTTAIPGAFGCGKTVISQALSKYSNSDVI 270
R E+ + RVLD P G I GKT++ Q +++ +
Sbjct: 14 NSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 72
Query: 271 VYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMKRTTLVANTSNMPVAAREASIYTGIT 330
V +E E + + + + +VA+T + P + I
Sbjct: 73 DCVLMVLLIDERPEEVTEMQR------------LVKGEVVASTFDEPASRHVQVAEMVIE 120
Query: 331 LSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRV 390
++ + +V ++ DS +R A A + ++ G A R F+ A V
Sbjct: 121 KAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV 179
Query: 391 KCLGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLI 450
+ G I A+ G + + G + L +K+A+++ FP+I++
Sbjct: 180 EEGG-----SLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 234
Query: 451 SYSKYMRALDDFYDKNHPEFVPLRTKVKEILQEEEDLSEIVQLVGK 496
S ++ + + + + + K+ + E + + ++ +
Sbjct: 235 SGTRKE---ELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 277
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3
{Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Length = 108
Score = 43.9 bits (104), Expect = 3e-06
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 475 TKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSPYD------R 528
+VKE LQ ++L +I+ ++G L+E D++T+ A+ ++ FL Q + +
Sbjct: 12 QRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIE-RFLSQPFFVAEVFTGSPGK 70
Query: 529 FCPFYKTV 536
+ +T+
Sbjct: 71 YVGLAETI 78
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 114
Score = 40.4 bits (95), Expect = 7e-05
Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 475 TKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSYSP 525
KV++ L+ ++L +I+ ++G L++ DK+ + A+ ++ FL QN +
Sbjct: 12 RKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQ-FFLSQNFHVA 61
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 118
Score = 33.9 bits (78), Expect = 0.014
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 475 TKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNS 522
V++ILQ+ + L +I+ ++G L+E DK+T+ A+ ++ Q
Sbjct: 15 RGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQ 62
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 32.8 bits (74), Expect = 0.099
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 355 ALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSV----SIVGAVSP 410
AL +ISG L + + G+ +YL A R+G +CLGNP E ++GA
Sbjct: 1 ALADISGYLDVLDSVRGF-SYL--ENAREVLRSGEARCLGNPRSEPEYVKALYVIGASRI 57
Query: 411 PGGD 414
P GD
Sbjct: 58 PVGD 61
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Plasmodium knowlesi
[TaxId: 5850]}
Length = 171
Score = 29.0 bits (65), Expect = 1.0
Identities = 28/133 (21%), Positives = 41/133 (30%), Gaps = 25/133 (18%)
Query: 359 ISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSDP 418
+ E+ +DS Y +A F E A VK I S D
Sbjct: 8 FTN--DEVCSDS-YNQEDPFGIADFREIAFEVKSNKRIKGNDDYGI-ADNSEEAVDGMGA 63
Query: 419 VTSATLGIVQVFW----GLDKKLAQRKHFPSINWLISYSK-YMRALDDFYDKNHPEFVPL 473
+ IV F L KK Y K YM+ + + ++ P+ V +
Sbjct: 64 DVEQVIDIVDSFQLTSTSLSKKE-----------YSVYIKNYMQKILKYLEEKKPDRVDV 112
Query: 474 RTK-----VKEIL 481
+K IL
Sbjct: 113 FKTKAQPLIKHIL 125
>d1skyb2 b.49.1.1 (B:21-95) F1 ATP synthase alpha subunit, domain
1 {Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 75
Score = 27.0 bits (60), Expect = 1.7
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFELVGEIIRLEGDMATIQVYEETSGVTVGDP 77
G V V + A + E V ++G + LE + I + +G+ GD
Sbjct: 9 GTVIQVGDGIARAHGLDNVMSGEAVEFAN-AVMGMALNLEENNVGIVILGPYTGIKEGDE 67
Query: 78 VLRTGK 83
V RTG+
Sbjct: 68 VRRTGR 73
>d1fx0a2 b.49.1.1 (A:25-96) F1 ATP synthase alpha subunit, domain
1 {Spinach (Spinacia oleracea), chloroplast [TaxId:
3562]}
Length = 72
Score = 26.6 bits (59), Expect = 2.0
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 18 GFVYAVSGPVVTAEKMSGSAMYELVRVGYFE--LVGEIIRLEGDMATIQVYEETSGVTVG 75
G V V + + ELV FE +G + LE + + + + + G
Sbjct: 6 GTVLQVGDGIARIHGLDEVMAGELVE---FEEGTIGIALNLESNNVGVVLMGDGLMIQEG 62
Query: 76 DPVLRTGK 83
V TG+
Sbjct: 63 SSVKATGR 70
>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 72
Score = 26.1 bits (58), Expect = 2.7
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 18 GFVYAVSGPVVTAEKMSG-SAMYELVRV--GYFELVGEIIRLEGD--MATIQVYEETSGV 72
G + AV G VV + G + + V LV E+ + G+ + TI + T G+
Sbjct: 2 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTI-AMDGTEGL 60
Query: 73 TVGDPVLRTGKP 84
G VL +G P
Sbjct: 61 VRGQKVLDSGAP 72
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 28.3 bits (63), Expect = 2.7
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 223 YPLLTGQRVLDSL-FPCVLGGTTAIPGAFGCGKTVISQAL 261
YP VL L F G TA+ G G GK+ ++ L
Sbjct: 21 YPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}
Length = 524
Score = 28.0 bits (61), Expect = 3.6
Identities = 10/97 (10%), Positives = 27/97 (27%), Gaps = 4/97 (4%)
Query: 431 WGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNHPEFVPLRTKVKEILQ----EEED 486
L + + + + D + LRT + + +E
Sbjct: 335 LRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEH 394
Query: 487 LSEIVQLVGKASLAESDKITLEVAKLLKDDFLQQNSY 523
L ++ G+ S + E + ++ + +
Sbjct: 395 LQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE 431
>d1v7ba2 a.121.1.1 (A:75-175) Transcriptional regulator Cgl2612
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 101
Score = 26.4 bits (58), Expect = 3.8
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 344 MMADSTS------RWAEALREISGRLAEMPADSGYPAYLGARLAS 382
++ D+ S W + ++ D+ A +LA+
Sbjct: 25 LLIDAPSHPDFLNAWRTVNHQWIPDTDDLENDAHKRAVYLVQLAA 69
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 27.2 bits (59), Expect = 4.4
Identities = 10/58 (17%), Positives = 19/58 (32%)
Query: 248 GAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVDGVTESIMK 305
G G GKT + + L+ S I ++ ++ D V + +
Sbjct: 11 GTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDN 68
>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1
{Spinach (Spinacia oleracea), chloroplast [TaxId:
3562]}
Length = 79
Score = 25.8 bits (57), Expect = 5.1
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 18 GFVYAVSGPVVTAEKMSGS--AMYELVRVGYFELVGEIIRLEGDMATIQ--------VYE 67
G + + GPV+ G +Y + V + G+ + + ++ +
Sbjct: 3 GRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMS 62
Query: 68 ETSGVTVGDPVLRTGKP 84
T G+T G V+ TG P
Sbjct: 63 ATDGLTRGMEVIDTGAP 79
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 27.3 bits (60), Expect = 5.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 245 AIPGAFGCGKTVISQALSKYSNSDVIVYV 273
I G G GKT +Q L + D IVYV
Sbjct: 8 YIDGPHGMGKTTTTQLLVALGSRDDIVYV 36
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 27.0 bits (59), Expect = 7.8
Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 468 PEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAESDKITLEVAKLLKDDF----LQQNSY 523
+ + + + + + +E LS++ + + D +E A+++ DD + Q+
Sbjct: 16 AQTIADQERFRALSREYAQLSDVSRCFTDWQQVQED---IETAQMMLDDPEMREMAQDEL 72
Query: 524 SPYDRFCPFYKTVGMLRNMIAFYDMSRHAVESTAQSE 560
+ + + D R+A
Sbjct: 73 REAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGT 109
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 26.6 bits (57), Expect = 7.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 245 AIPGAFGCGKTVISQALSKYSNSDVI 270
AI G GK+V+ L+ N+
Sbjct: 11 AILGGESSGKSVLVNKLAAVFNTTSA 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.391
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,287,156
Number of extensions: 110937
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 27
Length of query: 615
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 524
Effective length of database: 1,158,166
Effective search space: 606878984
Effective search space used: 606878984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)