BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13481
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA 165
SEED ++ K E FE AV+ Y +AI+LNP++A+ + R +Y +L
Sbjct: 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG 64
Query: 166 CIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
++DC A+ I+P + AY G A L K EA + A ++D D +
Sbjct: 65 AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 128 KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187
K+ +A Y AI NP A+ Y R YL++ +P + DC AL+++ S A+ F
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 188 GRAYRLLGKWEEAAVDLRNA 207
G+ + ++EA +L+ A
Sbjct: 79 GQCQLEMESYDEAIANLQRA 98
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
+++ NE K + A + G +DA+ YSEAIKL+P + +LY+ R +Y + D
Sbjct: 1 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEA 200
+ + PD Y + A L ++EEA
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 91
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%)
Query: 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
+ ++ E K +A + +E+A+ YS+AI+LNPS+A+ Y R +YL+ + D
Sbjct: 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 62
Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
+ A++++ Y R + LGK+ A D K+
Sbjct: 63 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%)
Query: 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSV 172
+ E K + + K+ +A Y AI NP A+ Y R YL++ +P + DC
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
AL+++ S A+ F G+ + ++EA +L+ A
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 103
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%)
Query: 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
+ ++ E K +A + +E+A+ YS+AI+LNPS+A+ Y R +YL+ + D
Sbjct: 18 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALND 77
Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
+ A++++ Y R + LGK+ A D K+
Sbjct: 78 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 118
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%)
Query: 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
+ ++ E K +A + +E+A+ YS+AI+LNPS+A+ Y R +YL+ + D
Sbjct: 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 69
Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
+ A++++ Y R + LGK+ A D K+
Sbjct: 70 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
K + + G + A+ Y+EAIK NP A LY+ R Y +L + ++DC +++
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79
Query: 177 NPDSAAAYKFRGRAYRLLGKWEEA------AVDLRNACK 209
P Y + A + + +A A+DL ++CK
Sbjct: 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
H + F +A+ Y AI+L+P+ + Y+ Y+ I + AL+I PD +
Sbjct: 30 HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS 89
Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRN-ACKIDFDEQADEWLKEVTPNKLNLK 231
A R A LG + +A DL + DFD + E + E NK +K
Sbjct: 90 KALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMK 140
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 136 YSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184
+ +A+ LNP Y RGQ Y L D A +NP++ Y
Sbjct: 295 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 343
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
K H + F +A+ Y AI+L+P+ + Y+ Y+ I + AL+I
Sbjct: 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI 88
Query: 177 NPDSAAAYKFRGRAYRLLGKWEEAAVDLRN-ACKIDFDEQADEWLKEVTPNKLNLK 231
PD + A R A LG + +A DL + DFD + E + E NK +K
Sbjct: 89 KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMK 144
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 136 YSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184
+ +A+ LNP Y RGQ Y L D A +NP++ Y
Sbjct: 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
Y G +++A+ Y +A++L+P SA + G +Y + + I AL+++P SA A
Sbjct: 12 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ G AY G ++EA + A ++D
Sbjct: 72 WYNLGNAYYKQGDYDEAIEYYQKALELD 99
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
Y G +++A+ Y +A++L+P SA + G +Y + + I AL+++P SA A
Sbjct: 46 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ G AY G ++EA + A ++D
Sbjct: 106 WYNLGNAYYKQGDYDEAIEYYQKALELD 133
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
G +Y + + I AL+++P SA A+ G AY G ++EA + A ++D
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
Y G +++A+ Y +A++L+P++A + G +Y + + I AL+++P++A A
Sbjct: 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ G AY G ++EA + A ++D
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELD 107
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 145 SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDL 204
+SA + G +Y + + I AL+++P++A A+ G AY G ++EA
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 205 RNACKID 211
+ A ++D
Sbjct: 67 QKALELD 73
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL----SKPNACIRDCSVALKINPDSA 181
DG++ DA + Y +K PS A + + KP IR CS L++ PD+
Sbjct: 270 DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV 329
Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNA 207
A K R AY + ++EA D A
Sbjct: 330 NALKDRAEAYLIEEMYDEAIQDYETA 355
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G+ DA++ + A+ +P + + Y +R +L + K A + D + +++ D AA
Sbjct: 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99
Query: 187 RGRAYRLLGKWEEAAVDLRNACK 209
RG GK +EA D + K
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLK 122
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 101 TDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL 160
TD ++E+D+ + AY FE A Y +AI+L+PS+ Y + Y +
Sbjct: 5 TDAAIAEKDLGNA---------AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE 55
Query: 161 SKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG 195
K C++ C A+++ ++ A YK +A G
Sbjct: 56 KKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKP 163
E+++E+ +K NE + G + A+ Y+EA+K +P +A+LY+ R +L +
Sbjct: 11 ELAQEEKNKGNE-------YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 164 NACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLK 221
+ DC ++++ Y + + +W +A +A ++D +E+A E ++
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL----SKPNACIRDCSVALKINPDSA 181
DG++ DA + Y K PS A + + KP IR CS L+ PD+
Sbjct: 270 DGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQXEPDNV 329
Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNA 207
A K R AY + ++EA D A
Sbjct: 330 NALKDRAEAYLIEEXYDEAIQDYETA 355
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G+ DA++ + A+ +P + + Y +R +L K A + D + +++ D AA
Sbjct: 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQ 99
Query: 187 RGRAYRLLGKWEEAAVDLRNACK 209
RG GK +EA D + K
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLK 122
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
GK ++A+ Y EAI+++P+ A Y+ G + ++ ++ + A++INP A A+
Sbjct: 57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFD 213
++ G EA R A K+ D
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPD 143
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 39/98 (39%)
Query: 130 EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189
+ A+ Y+ AI++NP+ A ++ + I ALK+ PD AY
Sbjct: 94 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 153
Query: 190 AYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNK 227
+++ W + ++ I D+ L V P+
Sbjct: 154 CLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHH 191
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G E+AV Y +A+++ P A ++ Q K + A++I+P A AY
Sbjct: 23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82
Query: 187 RGRAYR 192
G +
Sbjct: 83 MGNTLK 88
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
Y G ++ A+ Y +A++L+P++A + +RG +Y + I D AL+++P++A A
Sbjct: 54 YKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Query: 184 YKFRGRAYRLLG 195
+ G A + G
Sbjct: 114 KQNLGNAKQKQG 125
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL----SKPNACIRDCSVALKINPDS 180
DG++ DA + Y K PS A + + KP IR CS L+ PD+
Sbjct: 246 RDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQXEPDN 305
Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNA 207
A K R AY + ++EA D A
Sbjct: 306 VNALKDRAEAYLIEEXYDEAIQDYEAA 332
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G+ DA++ + A+ +P + + Y +R +L K A + D + + + D AA
Sbjct: 17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTAARLQ 76
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
RG GK +EA D + K + EQ
Sbjct: 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G F+ A+ AY + +K +P++ K G++Y+ + PN I + ++ SA AY
Sbjct: 19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYI 78
Query: 187 RGRAYRLLGKWEEAAVD 203
G A ++ + ++AA+D
Sbjct: 79 LGSANFMIDE-KQAAID 94
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%)
Query: 132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191
A++A AI LN A Y K G Y + + + I + I P AY+ G AY
Sbjct: 92 AIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY 151
Query: 192 RLLGKWEEA 200
G +EA
Sbjct: 152 EGKGLRDEA 160
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
Y G +++A+ Y +A++L P++A + G +Y + + I AL++ P++A A
Sbjct: 20 YKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 79
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKI 210
+ G AY G ++EA + A ++
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALEL 106
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC 170
+K+ E + E + + +AV AY+E IK P A Y+ R + +L I DC
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196
Query: 171 SVALKINPDSAAAY 184
+ A++ +P+ AY
Sbjct: 197 NKAIEKDPNFVRAY 210
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCS 171
K+ E + E + + +AV AY+E IK P A Y+ R + +L I DC+
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62
Query: 172 VALKINPDSAAAY 184
A++ +P+ AY
Sbjct: 63 KAIEKDPNFVRAY 75
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%)
Query: 137 SEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK 196
++ KL P + G L++S + C AL+I+P + A R + ++ L +
Sbjct: 263 ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE 322
Query: 197 WEEAAVDLRNACKIDFDEQA 216
+++A DL+ A +I +++A
Sbjct: 323 YDQALADLKKAQEIAPEDKA 342
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
+ + K++DA+ Y+ A++L + Y+ Y+ + + + AL++ PD +
Sbjct: 17 FRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKV 75
Query: 184 YKFRGRAYRLLGKWEEAAVDLRN-ACKIDFDEQADEWLKEVTPNK 227
R A LGK+ +A DL + DF++ + E + E NK
Sbjct: 76 LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNK 120
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 26/123 (21%)
Query: 107 EEDIDKSNE----KKREAIHAYNDGKFE----DAVNAYSE---AIKLNPSSALLYAKRGQ 155
EE +DK+NE K++ AI + G F+ D + A+ + AI+L P R
Sbjct: 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--------RVN 271
Query: 156 SYLQLSKPNACIRDCSV-------ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208
SY+ ++ A D + ALK++ ++++ Y RG+ +L +++A D A
Sbjct: 272 SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331
Query: 209 KID 211
++D
Sbjct: 332 ELD 334
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPS---SALLYAKRGQSYLQLSKPNACIRDCSVA 173
++E + G + A+ AY++A+ L+ + A+L+ R +L+L + + S A
Sbjct: 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91
Query: 174 LKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
++ + A R +A LG+ ++A +DL+ ++
Sbjct: 92 IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 34/73 (46%)
Query: 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
AY F+ A+ Y +A +L+P++ + Y + N C C A+++ ++
Sbjct: 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 73
Query: 183 AYKFRGRAYRLLG 195
Y+ +AY +G
Sbjct: 74 DYRQIAKAYARIG 86
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 34/73 (46%)
Query: 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
AY F+ A+ Y +A +L+P++ + Y + N C C A+++ ++
Sbjct: 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 73
Query: 183 AYKFRGRAYRLLG 195
Y+ +AY +G
Sbjct: 74 DYRQIAKAYARIG 86
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 33/73 (45%)
Query: 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
AY F+ A+ Y +A +L+P++ + Y + N C C A+++ ++
Sbjct: 14 AYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 73
Query: 183 AYKFRGRAYRLLG 195
Y+ AY +G
Sbjct: 74 DYRMIAYAYARIG 86
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
GK++D A LN ++ L+ +L + + I C++ L + A
Sbjct: 219 GKYQDMALAVKNPCHLNIAACLI---------KLKRYDEAIGHCNIVLTEEEKNPKALFR 269
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQA 216
RG+A LG+ + A D R A K D++A
Sbjct: 270 RGKAKAELGQMDSARDDFRKAQKYAPDDKA 299
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 166 CIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221
C AL++NP+ A + G Y L ++ AA +LR A ++ D+ A W K
Sbjct: 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-AQLWNK 211
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 166 CIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221
C AL++NP+ A + G Y L ++ AA +LR A ++ D+ A W K
Sbjct: 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-AQLWNK 211
>pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox: Structure At 1.8
Angstrom Resolution And Biochemical Characterizations Of
The A128v Mutant Implicated In Chronic Granulomatous
Disease
Length = 213
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 131 DAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVAL-KINPDSAAAYKFRGR 189
+A A++ +I + A+ Y +RG Y Q K + I+D AL ++ + YK G
Sbjct: 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114
Query: 190 AYRLLG 195
++L
Sbjct: 115 QFKLFA 120
>pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX
Length = 203
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 131 DAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVAL-KINPDSAAAYKFRGR 189
+A A++ +I + A+ Y +RG Y Q K + I+D AL ++ + YK G
Sbjct: 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114
Query: 190 AYRLLG 195
++L
Sbjct: 115 QFKLFA 120
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 152 KRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+RG+ YL+ + + ++D ++NP A + RG Y LLG+ ++A L+ A ++
Sbjct: 94 ERGKGYLE--QALSVLKDAE---RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 38/90 (42%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
Y G FE A + + P + + + Q + + ++A+K NP A A
Sbjct: 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
Y G Y+ G+ +EA R+A ++ D
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 31/74 (41%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G+ ++A+ Y A++L P Y + + ++ AL+ NPD
Sbjct: 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140
Query: 187 RGRAYRLLGKWEEA 200
G + LG+ EEA
Sbjct: 141 LGNLLKALGRLEEA 154
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 127 GKFEDAVNAYSEAIKLNPSSA-----LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
G +A + Y+ A++L P+ A L KR Q ++ + +R AL++ P+ A
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA-----VRLYRKALEVFPEFA 339
Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
AA+ + GK +EA + + A +I
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYKEAIRI 368
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQS 156
GK ++A+ Y EAI+++P+ A Y+ G +
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGNT 382
>pdb|1WM5|A Chain A, Crystal Structure Of The N-Terminal Tpr Domain (1-203) Of
P67phox
Length = 208
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 131 DAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVAL-KINPDSAAAYKFRGR 189
+A A++ +I + A+ Y +RG Y Q K + I+D AL ++ + YK G
Sbjct: 60 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 119
Query: 190 AYRLLG 195
++L
Sbjct: 120 QFKLFA 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 145 SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDL 204
+SA + G +Y + + I AL+++P++A A+ G AY G ++EA
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 205 RNACKID 211
+ A ++D
Sbjct: 67 QKALELD 73
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAI------------KLNPSSALLYAKR 153
SEE +++S K + +GK++ A+ Y + + + + AL A
Sbjct: 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199
Query: 154 ---GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
+L+L +A I C+ AL+++ ++ RG A+ + +E A D + ++
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQA 216
AY G AYR LG W++A + ++A +++ D A
Sbjct: 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKR 153
G ++ A+N Y AI+LNP S L A++
Sbjct: 49 GDWQKALNNYQSAIELNPDSPALQARK 75
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 103 IEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162
I+V+E + N + R + N G+F++A++++ A+ L P+ ++ SY Q+ +
Sbjct: 100 IKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 128 KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187
K++ AV + + NP + + + G + L + + I +AL + P+ ++
Sbjct: 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
Query: 188 GRAYRLLGKWEEAAVDLRNACKID 211
+Y +G+ EEA + A ++D
Sbjct: 151 AFSYEQMGRHEEALPHFKKANELD 174
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 103 IEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS- 161
I+V+E + N + R + N G+F++A++++ A+ L P+ ++ SY Q+
Sbjct: 100 IKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159
Query: 162 ---------KPNACIRDCSVALKINPDSAAA 183
K N SV L + P ++A
Sbjct: 160 HEEALPHFKKANELDEGASVELALVPRGSSA 190
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 145 SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDL 204
SA + G +Y + + I AL+++P SA A+ G AY G ++EA
Sbjct: 1 GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 205 RNACKID 211
+ A ++D
Sbjct: 61 QKALELD 67
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 103 IEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162
I+V+E + N + R + N G+F++A++++ A+ L P+ ++ SY Q+ +
Sbjct: 100 IKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAI------------KLNPSSALLYAKR 153
SEE +++S K + +GK++ A+ Y + + + + AL A
Sbjct: 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199
Query: 154 ---GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
+L+L +A I C+ AL+++ ++ RG A+ + +E A D + ++
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQL 259
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 112 KSNEKKREAI-----HAYNDGKFEDA-VNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA 165
+SNEK A HAY K DA ++A ++ + L+ + A ++ YL P
Sbjct: 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568
Query: 166 CIRDCSVALKINPDSAAAYKFRGRA 190
I +L I+P+ A RA
Sbjct: 569 AITHLHESLAISPNEIMASDLLKRA 593
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,962,670
Number of Sequences: 62578
Number of extensions: 206273
Number of successful extensions: 513
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 101
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)