Query psy13481
Match_columns 231
No_of_seqs 291 out of 2073
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 20:29:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1308|consensus 100.0 1.5E-32 3.2E-37 222.8 12.6 227 4-231 1-232 (377)
2 KOG0553|consensus 99.9 1.6E-20 3.4E-25 150.9 13.7 119 108-226 76-195 (304)
3 PRK15359 type III secretion sy 99.8 4.1E-17 8.9E-22 121.9 14.4 110 116-225 27-137 (144)
4 PLN03088 SGT1, suppressor of 99.7 3.2E-16 7E-21 133.6 15.8 115 114-228 3-118 (356)
5 PRK15363 pathogenicity island 99.7 1.3E-15 2.8E-20 113.2 14.5 103 110-212 32-134 (157)
6 TIGR02552 LcrH_SycD type III s 99.7 1.2E-15 2.6E-20 112.3 13.8 119 108-226 12-131 (135)
7 KOG0548|consensus 99.7 1E-15 2.2E-20 131.2 13.3 117 110-226 355-472 (539)
8 PRK11189 lipoprotein NlpI; Pro 99.6 1.5E-14 3.2E-19 120.6 16.4 105 111-215 62-166 (296)
9 PRK10370 formate-dependent nit 99.6 1.7E-14 3.6E-19 113.4 13.7 115 106-220 66-184 (198)
10 KOG0543|consensus 99.6 1.9E-14 4.2E-19 120.3 14.3 122 108-229 203-340 (397)
11 KOG1125|consensus 99.6 2.7E-15 5.8E-20 129.6 9.5 113 112-224 429-552 (579)
12 PRK10803 tol-pal system protei 99.6 5.5E-13 1.2E-17 108.8 19.7 106 113-218 142-254 (263)
13 KOG4234|consensus 99.5 2.3E-13 5E-18 104.0 14.1 116 110-225 92-213 (271)
14 KOG1126|consensus 99.5 1E-14 2.2E-19 127.8 5.1 126 102-227 410-536 (638)
15 KOG0550|consensus 99.5 9.8E-14 2.1E-18 116.0 10.5 122 109-230 245-370 (486)
16 TIGR02795 tol_pal_ybgF tol-pal 99.5 1.1E-12 2.3E-17 93.9 14.5 104 113-216 2-111 (119)
17 KOG1155|consensus 99.5 1.7E-13 3.7E-18 116.0 11.5 114 117-230 334-448 (559)
18 KOG4626|consensus 99.5 1.2E-13 2.6E-18 120.6 10.4 105 110-214 385-489 (966)
19 PF13414 TPR_11: TPR repeat; P 99.5 1.5E-13 3.3E-18 89.3 8.0 67 146-212 2-69 (69)
20 TIGR00990 3a0801s09 mitochondr 99.5 9.2E-13 2E-17 120.3 16.0 106 110-215 328-433 (615)
21 KOG0548|consensus 99.5 2.9E-13 6.3E-18 116.3 11.4 111 113-223 2-113 (539)
22 KOG4648|consensus 99.5 1.9E-13 4.1E-18 112.2 9.7 106 109-214 93-198 (536)
23 cd00189 TPR Tetratricopeptide 99.5 1.2E-12 2.5E-17 88.3 12.0 99 115-213 2-100 (100)
24 KOG0547|consensus 99.5 2.5E-13 5.4E-18 115.7 10.1 106 110-215 323-428 (606)
25 PRK02603 photosystem I assembl 99.5 3E-12 6.5E-17 98.4 15.3 116 109-224 31-165 (172)
26 TIGR00990 3a0801s09 mitochondr 99.5 1.1E-12 2.5E-17 119.7 14.6 115 109-223 361-476 (615)
27 KOG4626|consensus 99.5 3.1E-13 6.8E-18 118.0 9.6 104 110-213 317-420 (966)
28 KOG0547|consensus 99.5 9.3E-13 2E-17 112.2 12.0 101 108-208 110-210 (606)
29 PF13414 TPR_11: TPR repeat; P 99.4 3.9E-13 8.4E-18 87.4 7.3 67 112-178 2-69 (69)
30 PRK15331 chaperone protein Sic 99.4 4.7E-12 1E-16 94.6 13.5 118 111-228 35-152 (165)
31 COG3063 PilF Tfp pilus assembl 99.4 3.4E-12 7.3E-17 99.6 13.0 100 111-210 33-132 (250)
32 CHL00033 ycf3 photosystem I as 99.4 2E-11 4.3E-16 93.4 15.8 114 110-223 32-164 (168)
33 PF12895 Apc3: Anaphase-promot 99.4 1.1E-12 2.3E-17 88.8 7.5 82 125-207 1-84 (84)
34 KOG1155|consensus 99.4 5.3E-12 1.1E-16 107.1 13.1 121 108-228 359-480 (559)
35 PRK12370 invasion protein regu 99.4 4.8E-12 1E-16 114.2 13.4 107 109-215 291-406 (553)
36 PRK12370 invasion protein regu 99.4 8E-12 1.7E-16 112.7 13.9 117 107-223 332-450 (553)
37 PRK09782 bacteriophage N4 rece 99.4 1.1E-11 2.4E-16 117.3 15.0 102 113-214 609-710 (987)
38 KOG0624|consensus 99.4 4.6E-12 1E-16 104.1 10.2 106 109-214 34-139 (504)
39 PRK15359 type III secretion sy 99.4 5.3E-12 1.2E-16 94.2 9.5 88 107-194 52-139 (144)
40 PRK11189 lipoprotein NlpI; Pro 99.4 2.6E-11 5.5E-16 101.2 14.4 73 108-180 93-165 (296)
41 KOG1126|consensus 99.4 7.2E-12 1.6E-16 110.1 11.3 105 110-214 452-556 (638)
42 TIGR02521 type_IV_pilW type IV 99.3 8.1E-11 1.8E-15 92.9 15.2 106 109-214 61-168 (234)
43 PF13432 TPR_16: Tetratricopep 99.3 8.5E-12 1.8E-16 80.1 7.8 64 118-181 2-65 (65)
44 TIGR03302 OM_YfiO outer membra 99.3 4E-11 8.7E-16 96.5 13.5 103 113-215 33-149 (235)
45 PRK15179 Vi polysaccharide bio 99.3 3.6E-11 7.7E-16 110.1 14.6 116 107-222 80-196 (694)
46 COG5010 TadD Flp pilus assembl 99.3 5.1E-11 1.1E-15 94.7 13.4 112 110-221 97-209 (257)
47 PLN02789 farnesyltranstransfer 99.3 6.1E-11 1.3E-15 99.6 14.0 121 104-224 62-186 (320)
48 PRK10370 formate-dependent nit 99.3 6E-11 1.3E-15 93.2 12.9 90 126-215 52-144 (198)
49 KOG4642|consensus 99.3 1.2E-11 2.6E-16 96.9 8.7 114 111-224 8-127 (284)
50 TIGR02521 type_IV_pilW type IV 99.3 1.3E-10 2.7E-15 91.8 14.7 100 114-213 100-201 (234)
51 COG3063 PilF Tfp pilus assembl 99.3 3.7E-11 8E-16 93.9 10.9 111 105-215 61-173 (250)
52 COG1729 Uncharacterized protei 99.3 1.5E-10 3.3E-15 93.0 14.3 106 115-220 143-254 (262)
53 PF13432 TPR_16: Tetratricopep 99.3 2E-11 4.3E-16 78.4 7.5 65 151-215 1-65 (65)
54 PF13429 TPR_15: Tetratricopep 99.3 3.2E-11 6.9E-16 99.7 10.1 115 111-225 144-259 (280)
55 PRK09782 bacteriophage N4 rece 99.3 1.2E-10 2.6E-15 110.5 15.0 105 119-224 582-687 (987)
56 PRK15174 Vi polysaccharide exp 99.2 1.3E-10 2.8E-15 106.8 13.9 105 110-214 243-351 (656)
57 PRK15174 Vi polysaccharide exp 99.2 1.1E-10 2.5E-15 107.2 13.3 108 107-214 278-385 (656)
58 KOG4555|consensus 99.2 8.2E-10 1.8E-14 79.1 14.4 102 112-213 42-147 (175)
59 COG4235 Cytochrome c biogenesi 99.2 2.1E-10 4.5E-15 93.2 12.6 108 107-214 150-260 (287)
60 PRK15179 Vi polysaccharide bio 99.2 2.3E-10 4.9E-15 104.9 14.0 109 106-214 113-221 (694)
61 PF13512 TPR_18: Tetratricopep 99.2 7E-10 1.5E-14 81.3 13.5 103 113-215 10-133 (142)
62 KOG0376|consensus 99.2 1.8E-11 3.9E-16 104.6 5.8 116 113-228 4-120 (476)
63 KOG0551|consensus 99.2 1.8E-10 4E-15 94.2 10.7 103 112-214 80-186 (390)
64 TIGR02552 LcrH_SycD type III s 99.2 2.6E-10 5.6E-15 83.7 10.7 91 134-224 4-95 (135)
65 KOG1173|consensus 99.2 1.3E-10 2.8E-15 100.8 10.2 116 110-225 411-534 (611)
66 PLN02789 farnesyltranstransfer 99.2 3.4E-10 7.3E-15 95.1 12.3 120 107-226 100-229 (320)
67 KOG0545|consensus 99.2 6.6E-10 1.4E-14 87.7 13.0 119 107-225 172-310 (329)
68 TIGR03302 OM_YfiO outer membra 99.2 5.7E-10 1.2E-14 89.7 13.2 118 110-227 67-216 (235)
69 PRK11788 tetratricopeptide rep 99.2 1.3E-09 2.9E-14 93.8 15.3 100 116-215 183-283 (389)
70 KOG2076|consensus 99.1 2.2E-09 4.8E-14 97.5 16.1 103 112-214 138-240 (895)
71 PRK10049 pgaA outer membrane p 99.1 1.6E-09 3.4E-14 101.4 15.9 104 111-215 47-150 (765)
72 TIGR02917 PEP_TPR_lipo putativ 99.1 9.9E-10 2.1E-14 102.9 14.2 115 109-224 766-881 (899)
73 PRK11447 cellulose synthase su 99.1 8.4E-10 1.8E-14 107.5 14.1 108 108-215 298-419 (1157)
74 PF14559 TPR_19: Tetratricopep 99.1 2.6E-10 5.5E-15 73.7 7.2 66 124-189 2-67 (68)
75 PRK10049 pgaA outer membrane p 99.1 1.9E-09 4.1E-14 100.9 15.6 111 113-223 359-469 (765)
76 PF13371 TPR_9: Tetratricopept 99.1 5.5E-10 1.2E-14 73.2 8.7 66 121-186 3-68 (73)
77 TIGR02917 PEP_TPR_lipo putativ 99.1 2.2E-09 4.9E-14 100.5 15.8 107 109-215 121-227 (899)
78 KOG0553|consensus 99.1 3E-10 6.6E-15 92.0 8.4 100 99-198 101-200 (304)
79 PRK10866 outer membrane biogen 99.1 3.6E-09 7.8E-14 85.7 14.6 103 113-215 32-158 (243)
80 PF13525 YfiO: Outer membrane 99.1 2.9E-09 6.4E-14 84.0 13.6 114 112-225 4-138 (203)
81 PLN03098 LPA1 LOW PSII ACCUMUL 99.1 6.1E-10 1.3E-14 95.5 9.9 71 107-177 69-142 (453)
82 PF12688 TPR_5: Tetratrico pep 99.1 5.8E-09 1.3E-13 75.0 13.3 96 114-209 2-103 (120)
83 PRK11788 tetratricopeptide rep 99.1 4.3E-09 9.4E-14 90.6 14.3 104 111-214 139-247 (389)
84 PF13371 TPR_9: Tetratricopept 99.1 1.1E-09 2.4E-14 71.7 8.2 69 153-221 1-69 (73)
85 COG4783 Putative Zn-dependent 99.1 5.5E-09 1.2E-13 89.6 14.3 119 111-229 304-423 (484)
86 KOG4162|consensus 99.1 1.9E-09 4.1E-14 96.5 11.9 107 109-215 680-788 (799)
87 PF09976 TPR_21: Tetratricopep 99.1 5E-09 1.1E-13 78.2 12.5 95 113-208 48-145 (145)
88 PLN03088 SGT1, suppressor of 99.1 1E-09 2.2E-14 93.9 9.7 89 107-195 30-118 (356)
89 PRK11447 cellulose synthase su 99.0 2.5E-09 5.5E-14 104.2 12.7 103 111-213 601-703 (1157)
90 PF06552 TOM20_plant: Plant sp 99.0 4.8E-09 1E-13 79.4 10.3 97 129-225 7-124 (186)
91 PRK15363 pathogenicity island 99.0 4.6E-09 1E-13 78.3 9.7 86 139-224 26-113 (157)
92 PRK10153 DNA-binding transcrip 99.0 2E-08 4.2E-13 89.7 15.3 108 112-220 338-492 (517)
93 PRK11906 transcriptional regul 99.0 1.5E-08 3.2E-13 87.2 13.3 116 109-224 291-415 (458)
94 PF14559 TPR_19: Tetratricopep 99.0 3.6E-09 7.8E-14 68.2 7.4 59 157-215 1-59 (68)
95 KOG2076|consensus 99.0 1.5E-08 3.3E-13 92.2 13.6 105 109-213 169-273 (895)
96 COG4785 NlpI Lipoprotein NlpI, 99.0 5.5E-09 1.2E-13 81.3 9.1 110 109-218 61-170 (297)
97 COG4783 Putative Zn-dependent 98.9 1.8E-08 3.9E-13 86.5 13.1 109 105-213 332-440 (484)
98 cd05804 StaR_like StaR_like; a 98.9 1E-08 2.3E-13 87.2 11.8 105 108-212 109-217 (355)
99 KOG3060|consensus 98.9 1.6E-08 3.5E-13 80.3 11.6 102 113-214 86-187 (289)
100 KOG3060|consensus 98.9 1.1E-08 2.3E-13 81.3 10.5 114 101-214 108-224 (289)
101 COG5010 TadD Flp pilus assembl 98.9 1.4E-08 3E-13 81.0 10.6 105 109-214 63-167 (257)
102 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 5.4E-09 1.2E-13 89.8 8.5 70 142-211 70-142 (453)
103 COG2956 Predicted N-acetylgluc 98.9 2.5E-08 5.5E-13 81.7 11.9 117 113-229 141-264 (389)
104 TIGR00540 hemY_coli hemY prote 98.9 4.2E-08 9.1E-13 85.5 14.2 121 108-228 258-384 (409)
105 PF13424 TPR_12: Tetratricopep 98.9 1.9E-09 4.2E-14 71.6 4.4 66 145-210 3-75 (78)
106 KOG1128|consensus 98.9 8E-09 1.7E-13 92.2 9.3 101 113-213 485-585 (777)
107 KOG1125|consensus 98.9 1.8E-08 3.8E-13 87.9 11.1 97 117-213 289-385 (579)
108 KOG0624|consensus 98.9 4.6E-08 1E-12 80.9 12.9 101 114-214 156-256 (504)
109 PF13424 TPR_12: Tetratricopep 98.9 9.2E-09 2E-13 68.2 7.0 68 110-177 2-76 (78)
110 PF13429 TPR_15: Tetratricopep 98.9 3.9E-09 8.5E-14 87.2 6.3 103 108-210 175-277 (280)
111 PRK14574 hmsH outer membrane p 98.9 5.8E-08 1.3E-12 90.8 14.0 101 114-214 35-135 (822)
112 KOG0543|consensus 98.8 5.1E-08 1.1E-12 82.2 11.7 100 113-212 257-357 (397)
113 KOG2002|consensus 98.8 7.5E-08 1.6E-12 88.4 12.8 112 111-222 305-422 (1018)
114 KOG0550|consensus 98.8 9.9E-09 2.1E-13 86.4 6.5 108 106-213 196-319 (486)
115 PRK10747 putative protoheme IX 98.8 1.9E-07 4.1E-12 81.1 14.5 122 105-229 255-376 (398)
116 PF09976 TPR_21: Tetratricopep 98.8 6.8E-07 1.5E-11 66.6 15.6 119 109-227 7-131 (145)
117 COG2956 Predicted N-acetylgluc 98.8 2E-07 4.3E-12 76.5 13.2 114 110-223 177-291 (389)
118 cd05804 StaR_like StaR_like; a 98.8 2E-07 4.2E-12 79.4 13.8 70 144-213 111-180 (355)
119 KOG2003|consensus 98.7 3.3E-08 7.2E-13 84.4 7.9 112 112-223 489-601 (840)
120 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 2E-07 4.3E-12 80.2 12.6 97 114-210 201-297 (395)
121 KOG1129|consensus 98.7 2.8E-08 6.1E-13 81.7 6.7 105 107-211 284-388 (478)
122 PRK14574 hmsH outer membrane p 98.7 4.2E-08 9.2E-13 91.7 8.8 94 120-214 109-202 (822)
123 KOG1840|consensus 98.7 1.1E-07 2.3E-12 84.1 10.2 107 105-211 191-313 (508)
124 KOG1156|consensus 98.7 1.6E-07 3.5E-12 83.0 10.8 101 114-214 8-108 (700)
125 CHL00033 ycf3 photosystem I as 98.7 1.9E-07 4.1E-12 71.3 10.1 92 123-214 9-105 (168)
126 KOG1173|consensus 98.7 1E-07 2.2E-12 83.1 8.7 112 104-215 303-414 (611)
127 KOG1840|consensus 98.7 1.8E-07 3.9E-12 82.7 10.2 103 109-211 237-355 (508)
128 PRK02603 photosystem I assembl 98.7 2.3E-07 4.9E-12 71.2 9.4 73 143-215 31-106 (172)
129 PRK14720 transcript cleavage f 98.6 3.8E-07 8.3E-12 85.2 12.4 103 110-214 28-149 (906)
130 TIGR02795 tol_pal_ybgF tol-pal 98.6 4.6E-07 9.9E-12 64.4 10.2 68 147-214 2-72 (119)
131 cd00189 TPR Tetratricopeptide 98.6 3.9E-07 8.4E-12 60.7 9.3 67 149-215 2-68 (100)
132 COG4700 Uncharacterized protei 98.6 1.4E-06 3.1E-11 66.5 12.8 109 112-220 88-199 (251)
133 KOG2002|consensus 98.6 4E-07 8.6E-12 83.8 10.6 117 108-224 265-386 (1018)
134 KOG1129|consensus 98.6 8.2E-08 1.8E-12 79.0 5.5 110 104-213 349-461 (478)
135 KOG4162|consensus 98.6 9.2E-07 2E-11 79.7 12.1 117 113-229 650-769 (799)
136 COG4235 Cytochrome c biogenesi 98.6 1.3E-06 2.9E-11 71.3 12.1 90 127-216 136-228 (287)
137 PF03704 BTAD: Bacterial trans 98.5 1.3E-05 2.7E-10 59.7 16.2 112 112-223 5-145 (146)
138 KOG1128|consensus 98.5 2.9E-07 6.4E-12 82.4 7.8 102 111-212 517-618 (777)
139 KOG2003|consensus 98.5 5.1E-07 1.1E-11 77.3 8.8 115 107-221 518-633 (840)
140 KOG1156|consensus 98.5 3.6E-07 7.8E-12 80.9 8.1 107 108-214 36-142 (700)
141 PF12895 Apc3: Anaphase-promot 98.5 2.9E-07 6.2E-12 62.0 5.8 61 112-173 24-84 (84)
142 TIGR00540 hemY_coli hemY prote 98.5 9.6E-06 2.1E-10 70.8 16.5 96 116-211 121-217 (409)
143 PRK14720 transcript cleavage f 98.5 7.8E-07 1.7E-11 83.1 9.8 102 110-212 62-180 (906)
144 PF13525 YfiO: Outer membrane 98.5 7.4E-06 1.6E-10 64.6 13.9 102 113-214 42-174 (203)
145 PRK10747 putative protoheme IX 98.5 4.5E-06 9.9E-11 72.6 13.8 98 116-213 121-219 (398)
146 PF13431 TPR_17: Tetratricopep 98.5 1.8E-07 3.8E-12 51.8 3.3 32 170-201 2-33 (34)
147 PF13428 TPR_14: Tetratricopep 98.4 6.3E-07 1.4E-11 52.6 5.2 42 148-189 2-43 (44)
148 KOG1174|consensus 98.4 1.9E-06 4.2E-11 73.0 9.4 103 111-213 298-400 (564)
149 KOG1127|consensus 98.4 7.5E-07 1.6E-11 82.3 7.5 100 114-213 563-662 (1238)
150 COG4105 ComL DNA uptake lipopr 98.4 1.3E-05 2.9E-10 64.2 13.7 103 113-215 34-150 (254)
151 KOG1174|consensus 98.4 1.6E-06 3.4E-11 73.5 8.6 63 107-169 328-390 (564)
152 PF13431 TPR_17: Tetratricopep 98.4 3.7E-07 8.1E-12 50.4 3.2 33 135-167 1-33 (34)
153 PF04733 Coatomer_E: Coatomer 98.4 2.6E-06 5.6E-11 70.9 9.6 97 118-214 136-234 (290)
154 KOG3785|consensus 98.4 7.4E-06 1.6E-10 68.4 11.9 114 106-221 52-225 (557)
155 PF00515 TPR_1: Tetratricopept 98.4 7.7E-07 1.7E-11 49.0 4.3 31 149-179 3-33 (34)
156 PF00515 TPR_1: Tetratricopept 98.4 1.2E-06 2.6E-11 48.3 4.8 34 181-214 1-34 (34)
157 PRK11906 transcriptional regul 98.3 6.2E-06 1.4E-10 71.3 11.2 107 108-214 333-440 (458)
158 PRK10803 tol-pal system protei 98.3 6E-06 1.3E-10 67.6 10.6 72 113-184 180-254 (263)
159 KOG1127|consensus 98.3 2E-06 4.3E-11 79.6 8.2 110 113-222 526-637 (1238)
160 PRK10866 outer membrane biogen 98.3 6.1E-05 1.3E-09 61.1 15.8 103 111-213 67-207 (243)
161 PF06552 TOM20_plant: Plant sp 98.3 3.9E-06 8.4E-11 63.8 8.0 83 108-190 20-123 (186)
162 KOG4234|consensus 98.3 6.8E-06 1.5E-10 63.5 9.3 78 112-189 133-210 (271)
163 PF12688 TPR_5: Tetratrico pep 98.3 6.4E-06 1.4E-10 59.2 8.7 67 148-214 2-71 (120)
164 PF07719 TPR_2: Tetratricopept 98.3 2.2E-06 4.8E-11 47.0 5.0 32 148-179 2-33 (34)
165 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.4E-05 7.3E-10 66.6 14.0 104 123-229 179-283 (395)
166 PF12569 NARP1: NMDA receptor- 98.3 2.2E-05 4.7E-10 70.1 13.2 99 113-211 194-292 (517)
167 PF14938 SNAP: Soluble NSF att 98.3 9.5E-06 2.1E-10 67.3 10.1 104 110-213 111-228 (282)
168 PF13428 TPR_14: Tetratricopep 98.2 3.3E-06 7.2E-11 49.5 5.3 42 114-155 2-43 (44)
169 PRK15331 chaperone protein Sic 98.2 6.3E-06 1.4E-10 62.0 8.0 76 139-214 29-104 (165)
170 PF04733 Coatomer_E: Coatomer 98.2 4.7E-05 1E-09 63.3 13.4 98 127-224 181-279 (290)
171 KOG0495|consensus 98.2 1.9E-05 4.1E-10 70.6 11.3 103 113-215 651-753 (913)
172 PF07719 TPR_2: Tetratricopept 98.2 3.8E-06 8.2E-11 46.1 4.4 34 181-214 1-34 (34)
173 KOG1310|consensus 98.2 1.9E-05 4.2E-10 68.9 10.7 111 108-218 369-482 (758)
174 KOG0495|consensus 98.2 2.4E-05 5.1E-10 70.0 11.0 112 115-227 620-732 (913)
175 PF13512 TPR_18: Tetratricopep 98.1 2.9E-05 6.2E-10 57.1 9.1 71 113-183 47-135 (142)
176 PRK10153 DNA-binding transcrip 98.1 1.5E-05 3.2E-10 71.4 9.0 69 113-182 420-488 (517)
177 PF14938 SNAP: Soluble NSF att 98.1 1.4E-05 3E-10 66.3 7.5 105 108-213 30-147 (282)
178 PF12569 NARP1: NMDA receptor- 98.0 0.00015 3.2E-09 64.9 13.9 103 113-215 4-111 (517)
179 COG3071 HemY Uncharacterized e 98.0 0.00017 3.7E-09 61.0 13.2 122 104-228 254-375 (400)
180 KOG4555|consensus 98.0 6.9E-05 1.5E-09 54.2 9.2 63 152-214 48-110 (175)
181 COG2976 Uncharacterized protei 98.0 0.00027 5.9E-09 54.5 12.0 109 113-222 89-200 (207)
182 KOG3785|consensus 97.9 3.5E-05 7.6E-10 64.5 7.6 86 122-207 31-117 (557)
183 PRK10941 hypothetical protein; 97.9 0.00014 2.9E-09 59.7 10.6 82 147-228 181-262 (269)
184 KOG2376|consensus 97.9 0.00018 4E-09 63.6 11.3 91 117-210 83-204 (652)
185 PF13181 TPR_8: Tetratricopept 97.9 3.1E-05 6.7E-10 42.4 4.2 30 149-178 3-32 (34)
186 PF12968 DUF3856: Domain of Un 97.9 0.0017 3.7E-08 46.1 13.5 98 113-210 9-129 (144)
187 COG3118 Thioredoxin domain-con 97.8 0.001 2.2E-08 54.6 14.1 112 114-225 135-283 (304)
188 COG1729 Uncharacterized protei 97.8 0.00016 3.4E-09 58.6 9.3 77 110-186 175-254 (262)
189 KOG2053|consensus 97.8 0.00025 5.4E-09 65.4 11.4 94 122-215 18-111 (932)
190 KOG4648|consensus 97.8 2.3E-05 4.9E-10 65.3 4.1 64 150-213 100-163 (536)
191 PF13181 TPR_8: Tetratricopept 97.8 4.5E-05 9.7E-10 41.7 3.9 33 182-214 2-34 (34)
192 COG4785 NlpI Lipoprotein NlpI, 97.8 9.5E-05 2.1E-09 58.0 6.7 69 147-215 65-133 (297)
193 PF04781 DUF627: Protein of un 97.8 0.00039 8.3E-09 48.8 9.1 93 119-211 2-108 (111)
194 KOG2796|consensus 97.8 0.00023 5.1E-09 57.4 8.9 106 110-215 209-320 (366)
195 PF05843 Suf: Suppressor of fo 97.7 0.0006 1.3E-08 56.5 11.8 100 116-215 4-104 (280)
196 COG0457 NrfG FOG: TPR repeat [ 97.7 0.00076 1.6E-08 51.5 11.7 92 122-213 139-234 (291)
197 KOG1130|consensus 97.7 0.00013 2.8E-09 62.2 7.6 97 114-210 236-344 (639)
198 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0016 3.5E-08 49.7 13.2 101 113-213 167-268 (291)
199 KOG1915|consensus 97.7 0.0016 3.5E-08 56.6 13.2 112 110-221 70-181 (677)
200 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00026 5.5E-09 43.1 6.0 32 184-215 4-35 (53)
201 KOG1130|consensus 97.6 3.4E-05 7.4E-10 65.7 2.9 96 116-211 198-305 (639)
202 PF09613 HrpB1_HrpK: Bacterial 97.6 0.0087 1.9E-07 45.0 15.3 112 113-225 10-121 (160)
203 KOG2376|consensus 97.6 0.00068 1.5E-08 60.1 10.4 98 110-214 43-143 (652)
204 PRK10941 hypothetical protein; 97.6 0.0015 3.3E-08 53.6 11.9 78 114-191 182-259 (269)
205 KOG4340|consensus 97.6 0.00021 4.5E-09 58.7 6.6 95 111-205 142-265 (459)
206 KOG4642|consensus 97.6 0.00014 3E-09 57.8 5.1 63 152-214 15-77 (284)
207 KOG3081|consensus 97.6 0.0025 5.5E-08 51.5 12.3 95 127-221 187-282 (299)
208 PLN03218 maturation of RBCL 1; 97.5 0.0039 8.5E-08 60.6 15.4 95 115-210 544-643 (1060)
209 COG4105 ComL DNA uptake lipopr 97.5 0.014 3E-07 47.1 15.4 114 113-226 71-216 (254)
210 PF14853 Fis1_TPR_C: Fis1 C-te 97.5 0.0008 1.7E-08 40.9 6.5 43 148-190 2-44 (53)
211 PF03704 BTAD: Bacterial trans 97.5 0.0016 3.6E-08 48.2 9.6 63 113-175 62-124 (146)
212 PLN03081 pentatricopeptide (PP 97.5 0.0011 2.4E-08 61.9 10.5 94 115-210 464-557 (697)
213 PF13174 TPR_6: Tetratricopept 97.4 0.00028 6.1E-09 38.0 4.1 28 151-178 4-31 (33)
214 KOG2471|consensus 97.4 0.00026 5.7E-09 61.5 5.5 113 111-223 238-378 (696)
215 KOG3824|consensus 97.4 0.0009 1.9E-08 55.2 8.2 85 107-191 110-194 (472)
216 PF10300 DUF3808: Protein of u 97.4 0.0017 3.6E-08 57.8 10.6 88 126-213 246-337 (468)
217 COG3071 HemY Uncharacterized e 97.4 0.0023 5.1E-08 54.3 10.7 86 124-210 305-390 (400)
218 PF05843 Suf: Suppressor of fo 97.4 0.0048 1E-07 51.1 12.5 102 114-215 36-141 (280)
219 PLN03218 maturation of RBCL 1; 97.4 0.0097 2.1E-07 57.9 15.8 94 116-209 475-570 (1060)
220 PF13174 TPR_6: Tetratricopept 97.4 0.00031 6.8E-09 37.8 3.5 33 182-214 1-33 (33)
221 PLN03077 Protein ECB2; Provisi 97.3 0.0038 8.2E-08 59.7 12.4 94 114-209 626-719 (857)
222 KOG1586|consensus 97.3 0.0042 9.1E-08 49.4 10.3 103 113-215 73-188 (288)
223 PF13176 TPR_7: Tetratricopept 97.3 0.00055 1.2E-08 38.1 4.0 28 183-210 1-28 (36)
224 COG4700 Uncharacterized protei 97.3 0.013 2.8E-07 45.2 12.5 116 113-229 124-247 (251)
225 PF13176 TPR_7: Tetratricopept 97.3 0.00064 1.4E-08 37.8 4.2 28 149-176 1-28 (36)
226 PF14561 TPR_20: Tetratricopep 97.3 0.0047 1E-07 42.1 9.2 74 132-205 7-82 (90)
227 PF10300 DUF3808: Protein of u 97.3 0.0025 5.4E-08 56.7 10.1 102 110-211 264-377 (468)
228 smart00028 TPR Tetratricopepti 97.3 0.00049 1.1E-08 35.9 3.6 30 149-178 3-32 (34)
229 PLN03081 pentatricopeptide (PP 97.3 0.0029 6.4E-08 59.0 11.0 98 113-214 290-426 (697)
230 KOG0551|consensus 97.3 0.0027 5.8E-08 52.9 9.2 70 112-181 118-187 (390)
231 KOG0376|consensus 97.2 0.00012 2.7E-09 63.3 1.2 90 105-194 30-119 (476)
232 PRK04841 transcriptional regul 97.2 0.0058 1.3E-07 58.6 12.4 99 113-211 491-603 (903)
233 PRK04841 transcriptional regul 97.2 0.0075 1.6E-07 57.8 13.1 97 114-210 453-560 (903)
234 KOG4507|consensus 97.2 0.00086 1.9E-08 59.6 5.9 99 125-223 619-719 (886)
235 PF15015 NYD-SP12_N: Spermatog 97.2 0.0067 1.5E-07 52.1 10.8 96 114-209 177-290 (569)
236 TIGR02561 HrpB1_HrpK type III 97.1 0.056 1.2E-06 40.1 14.3 110 113-223 10-119 (153)
237 KOG1585|consensus 97.1 0.012 2.7E-07 47.2 11.5 100 113-212 31-141 (308)
238 COG4976 Predicted methyltransf 97.1 0.00086 1.9E-08 53.1 4.8 61 121-181 3-63 (287)
239 smart00028 TPR Tetratricopepti 97.1 0.0008 1.7E-08 35.0 3.5 32 182-213 2-33 (34)
240 KOG0545|consensus 97.1 0.0031 6.7E-08 50.5 7.7 75 109-183 226-300 (329)
241 KOG2610|consensus 97.1 0.0052 1.1E-07 51.4 9.3 96 110-205 134-233 (491)
242 COG4976 Predicted methyltransf 97.1 0.00099 2.1E-08 52.7 4.8 61 155-215 3-63 (287)
243 PF04184 ST7: ST7 protein; In 97.1 0.015 3.2E-07 51.1 12.4 101 114-214 260-379 (539)
244 KOG4340|consensus 97.0 0.0051 1.1E-07 50.7 8.7 85 123-207 20-104 (459)
245 KOG2610|consensus 97.0 0.011 2.3E-07 49.7 10.4 99 117-215 107-209 (491)
246 KOG2471|consensus 97.0 0.0013 2.7E-08 57.5 5.1 83 113-195 283-383 (696)
247 KOG2396|consensus 97.0 0.01 2.2E-07 52.0 10.5 84 132-215 90-174 (568)
248 PF14561 TPR_20: Tetratricopep 97.0 0.0073 1.6E-07 41.1 7.9 63 165-227 6-71 (90)
249 KOG3081|consensus 96.9 0.018 3.9E-07 46.7 10.9 94 119-214 143-240 (299)
250 KOG1941|consensus 96.9 0.0034 7.3E-08 53.0 6.7 98 114-211 123-236 (518)
251 KOG2053|consensus 96.9 0.012 2.7E-07 54.7 10.6 108 107-215 37-144 (932)
252 KOG0546|consensus 96.8 0.0038 8.3E-08 52.4 6.2 104 112-215 221-343 (372)
253 KOG1915|consensus 96.8 0.022 4.8E-07 49.8 10.8 98 113-211 404-501 (677)
254 PLN03077 Protein ECB2; Provisi 96.8 0.029 6.3E-07 53.7 12.9 106 114-221 555-664 (857)
255 COG2912 Uncharacterized conser 96.7 0.011 2.4E-07 48.1 8.5 79 148-226 182-260 (269)
256 KOG1586|consensus 96.7 0.048 1.1E-06 43.6 11.7 108 111-219 32-152 (288)
257 PF13281 DUF4071: Domain of un 96.7 0.053 1.1E-06 46.6 12.8 102 112-213 178-337 (374)
258 KOG2796|consensus 96.7 0.0068 1.5E-07 49.2 6.9 81 111-191 250-333 (366)
259 KOG4814|consensus 96.5 0.036 7.9E-07 50.1 10.8 100 114-213 355-460 (872)
260 KOG3824|consensus 96.5 0.013 2.9E-07 48.5 7.5 62 154-215 123-184 (472)
261 KOG1308|consensus 96.5 0.002 4.4E-08 53.8 2.7 72 107-178 142-213 (377)
262 PF10602 RPN7: 26S proteasome 96.5 0.082 1.8E-06 40.7 11.4 100 112-211 35-143 (177)
263 KOG3364|consensus 96.4 0.1 2.2E-06 38.1 10.9 81 147-227 32-118 (149)
264 KOG1941|consensus 96.4 0.018 3.9E-07 48.8 8.0 99 113-211 162-276 (518)
265 PF04184 ST7: ST7 protein; In 96.4 0.039 8.4E-07 48.6 10.2 32 123-154 178-209 (539)
266 KOG4151|consensus 96.4 0.022 4.8E-07 52.4 9.1 106 109-214 49-160 (748)
267 COG2912 Uncharacterized conser 96.4 0.021 4.6E-07 46.5 8.1 72 120-191 188-259 (269)
268 KOG3364|consensus 96.3 0.066 1.4E-06 39.1 9.4 79 113-191 32-115 (149)
269 KOG1070|consensus 96.2 0.076 1.6E-06 52.0 11.8 89 125-213 1542-1632(1710)
270 PF13374 TPR_10: Tetratricopep 96.2 0.012 2.6E-07 33.2 4.4 29 182-210 3-31 (42)
271 PF13374 TPR_10: Tetratricopep 96.2 0.013 2.9E-07 33.0 4.6 31 147-177 2-32 (42)
272 KOG1585|consensus 96.2 0.045 9.8E-07 44.0 8.8 99 113-211 110-220 (308)
273 PF02259 FAT: FAT domain; Int 96.2 0.13 2.8E-06 43.5 12.4 63 113-175 146-212 (352)
274 PF09986 DUF2225: Uncharacteri 96.2 0.071 1.5E-06 42.4 9.9 92 122-213 86-197 (214)
275 PF13281 DUF4071: Domain of un 96.1 0.12 2.7E-06 44.4 11.4 92 122-213 150-258 (374)
276 KOG0530|consensus 96.0 0.26 5.6E-06 40.2 12.3 92 123-214 53-146 (318)
277 KOG1070|consensus 96.0 0.12 2.5E-06 50.8 11.9 100 112-211 1563-1664(1710)
278 PF12862 Apc5: Anaphase-promot 95.9 0.049 1.1E-06 37.3 6.9 55 158-212 9-72 (94)
279 PF10579 Rapsyn_N: Rapsyn N-te 95.9 0.13 2.8E-06 33.8 8.3 64 112-175 5-71 (80)
280 PF10516 SHNi-TPR: SHNi-TPR; 95.9 0.015 3.3E-07 32.7 3.5 30 148-177 2-31 (38)
281 PF12862 Apc5: Anaphase-promot 95.8 0.071 1.5E-06 36.4 7.3 58 121-178 6-72 (94)
282 PF02259 FAT: FAT domain; Int 95.7 0.56 1.2E-05 39.6 14.1 85 112-196 183-307 (352)
283 PF10373 EST1_DNA_bind: Est1 D 95.7 0.058 1.3E-06 44.2 7.7 62 132-193 1-62 (278)
284 COG3947 Response regulator con 95.6 0.14 3.1E-06 42.2 9.4 74 148-221 280-360 (361)
285 KOG2396|consensus 95.6 0.11 2.5E-06 45.7 9.2 75 112-186 104-179 (568)
286 COG3629 DnrI DNA-binding trans 95.6 0.68 1.5E-05 38.3 13.4 93 129-223 137-236 (280)
287 KOG4507|consensus 95.5 0.062 1.3E-06 48.3 7.6 101 113-213 213-315 (886)
288 COG5191 Uncharacterized conser 95.3 0.024 5.2E-07 47.1 4.1 80 107-186 101-181 (435)
289 COG5191 Uncharacterized conser 95.2 0.026 5.6E-07 46.9 4.0 81 135-215 95-176 (435)
290 COG3914 Spy Predicted O-linked 95.1 0.28 6E-06 44.2 10.4 96 119-214 73-175 (620)
291 COG3629 DnrI DNA-binding trans 95.1 0.26 5.6E-06 40.7 9.5 65 112-176 152-216 (280)
292 PF07720 TPR_3: Tetratricopept 95.1 0.086 1.9E-06 29.2 4.7 30 183-212 3-34 (36)
293 PF08424 NRDE-2: NRDE-2, neces 94.9 1.3 2.8E-05 37.5 13.7 82 129-210 47-131 (321)
294 KOG0529|consensus 94.9 1 2.2E-05 39.0 12.8 107 123-229 38-160 (421)
295 PF09986 DUF2225: Uncharacteri 94.9 0.39 8.5E-06 38.2 9.8 79 110-188 115-207 (214)
296 PRK13184 pknD serine/threonine 94.8 0.14 3E-06 49.2 8.3 97 120-217 482-588 (932)
297 KOG2047|consensus 94.7 0.79 1.7E-05 41.9 12.0 103 111-213 423-543 (835)
298 PF08424 NRDE-2: NRDE-2, neces 94.6 0.53 1.2E-05 39.8 10.6 82 133-214 5-98 (321)
299 PF07720 TPR_3: Tetratricopept 94.6 0.16 3.4E-06 28.1 4.9 31 148-178 2-34 (36)
300 KOG0530|consensus 94.5 0.66 1.4E-05 37.9 10.2 87 126-212 91-178 (318)
301 COG0790 FOG: TPR repeat, SEL1 94.5 2.2 4.8E-05 35.1 14.1 98 113-212 109-222 (292)
302 COG3898 Uncharacterized membra 94.4 1.1 2.4E-05 38.8 11.6 94 114-209 121-216 (531)
303 KOG3617|consensus 94.4 0.4 8.7E-06 45.1 9.7 97 114-210 859-996 (1416)
304 PF07079 DUF1347: Protein of u 94.2 1.6 3.5E-05 38.4 12.5 94 113-207 379-521 (549)
305 PF10579 Rapsyn_N: Rapsyn N-te 94.1 0.63 1.4E-05 30.6 7.7 60 150-209 9-71 (80)
306 PF10516 SHNi-TPR: SHNi-TPR; 94.1 0.092 2E-06 29.5 3.3 30 182-211 2-31 (38)
307 COG3898 Uncharacterized membra 94.1 2.7 5.9E-05 36.4 13.3 98 123-221 198-303 (531)
308 PF08631 SPO22: Meiosis protei 93.9 2.3 5.1E-05 35.1 12.9 104 109-212 31-152 (278)
309 PF12968 DUF3856: Domain of Un 93.9 1.2 2.7E-05 31.9 9.3 68 109-176 51-129 (144)
310 PF10255 Paf67: RNA polymerase 93.8 0.12 2.7E-06 44.8 5.2 55 118-173 127-190 (404)
311 PF10373 EST1_DNA_bind: Est1 D 93.7 0.29 6.3E-06 40.0 7.1 61 166-226 1-62 (278)
312 PF04910 Tcf25: Transcriptiona 93.7 1.6 3.4E-05 37.6 11.7 106 109-214 99-226 (360)
313 KOG0529|consensus 93.7 1.1 2.4E-05 38.8 10.5 88 127-214 89-182 (421)
314 PF07721 TPR_4: Tetratricopept 93.5 0.11 2.4E-06 26.3 2.8 22 183-204 3-24 (26)
315 KOG4814|consensus 93.5 0.36 7.9E-06 44.0 7.6 68 149-216 356-429 (872)
316 PHA02537 M terminase endonucle 93.4 0.11 2.5E-06 41.5 4.0 107 123-229 93-226 (230)
317 PF04910 Tcf25: Transcriptiona 93.4 2 4.3E-05 37.0 11.8 100 107-206 34-164 (360)
318 TIGR03504 FimV_Cterm FimV C-te 93.4 0.41 8.9E-06 27.8 5.3 25 185-209 3-27 (44)
319 KOG2300|consensus 93.2 2.1 4.5E-05 38.0 11.6 97 113-212 367-476 (629)
320 PF08631 SPO22: Meiosis protei 93.2 1.1 2.4E-05 37.0 9.8 91 123-213 3-119 (278)
321 PF09613 HrpB1_HrpK: Bacterial 93.2 2.1 4.5E-05 32.3 10.3 77 147-223 10-87 (160)
322 KOG1258|consensus 93.1 2.9 6.2E-05 37.9 12.6 112 103-214 287-399 (577)
323 PF10602 RPN7: 26S proteasome 93.0 0.97 2.1E-05 34.8 8.6 66 147-212 36-104 (177)
324 KOG1914|consensus 93.0 0.72 1.6E-05 41.3 8.6 102 104-207 11-113 (656)
325 PF10255 Paf67: RNA polymerase 93.0 0.44 9.6E-06 41.4 7.3 58 152-209 127-192 (404)
326 PF07721 TPR_4: Tetratricopept 93.0 0.14 3.1E-06 25.9 2.7 23 149-171 3-25 (26)
327 KOG1550|consensus 92.9 2.1 4.6E-05 39.1 11.9 97 113-211 244-358 (552)
328 PF11207 DUF2989: Protein of u 92.8 2 4.4E-05 33.7 10.0 75 125-201 118-198 (203)
329 KOG1550|consensus 92.6 3.2 6.9E-05 37.9 12.6 90 118-211 293-394 (552)
330 PF07079 DUF1347: Protein of u 92.5 1.4 3E-05 38.8 9.4 58 114-172 463-520 (549)
331 PF14863 Alkyl_sulf_dimr: Alky 92.1 0.71 1.5E-05 34.1 6.5 49 114-162 71-119 (141)
332 smart00386 HAT HAT (Half-A-TPR 92.1 0.51 1.1E-05 24.4 4.4 29 127-155 1-29 (33)
333 PF11846 DUF3366: Domain of un 92.1 1.3 2.8E-05 34.3 8.4 57 163-220 127-183 (193)
334 COG0790 FOG: TPR repeat, SEL1 92.0 6.1 0.00013 32.5 13.3 82 128-214 170-270 (292)
335 PRK15180 Vi polysaccharide bio 91.7 1.6 3.4E-05 38.8 9.0 80 122-201 298-377 (831)
336 KOG2581|consensus 91.7 2.7 5.8E-05 36.5 10.1 109 113-221 169-287 (493)
337 KOG0546|consensus 91.6 0.15 3.2E-06 43.1 2.6 82 116-197 278-359 (372)
338 KOG1839|consensus 91.5 0.58 1.2E-05 45.9 6.7 104 108-211 968-1087(1236)
339 KOG1310|consensus 91.0 0.56 1.2E-05 41.9 5.6 72 110-181 405-479 (758)
340 KOG0686|consensus 90.9 2.4 5.1E-05 36.8 9.1 96 113-208 150-256 (466)
341 KOG2047|consensus 90.7 5.7 0.00012 36.7 11.6 104 111-214 475-583 (835)
342 cd02682 MIT_AAA_Arch MIT: doma 90.4 1.8 3.8E-05 28.3 6.3 31 112-142 5-35 (75)
343 KOG3807|consensus 90.4 3.7 8.1E-05 34.9 9.6 95 117-213 188-307 (556)
344 PF04781 DUF627: Protein of un 89.9 1.7 3.7E-05 30.6 6.3 62 153-214 2-77 (111)
345 PF11207 DUF2989: Protein of u 89.7 1.6 3.5E-05 34.2 6.7 57 112-169 140-200 (203)
346 COG2976 Uncharacterized protei 89.7 8.4 0.00018 30.2 12.8 97 112-209 52-154 (207)
347 PRK13184 pknD serine/threonine 89.7 2.3 5E-05 41.1 9.0 87 128-215 534-625 (932)
348 PF10345 Cohesin_load: Cohesin 89.5 8.3 0.00018 35.7 12.4 102 104-205 292-428 (608)
349 COG3118 Thioredoxin domain-con 89.4 2.3 5.1E-05 35.3 7.7 59 149-207 136-194 (304)
350 PF11817 Foie-gras_1: Foie gra 89.3 3.6 7.9E-05 33.3 8.8 61 147-207 178-244 (247)
351 KOG1839|consensus 89.3 0.88 1.9E-05 44.6 5.9 100 111-210 930-1044(1236)
352 KOG1914|consensus 89.2 4.3 9.3E-05 36.6 9.6 76 137-213 10-85 (656)
353 KOG2300|consensus 88.9 12 0.00027 33.4 12.0 109 113-224 404-531 (629)
354 COG5091 SGT1 Suppressor of G2 88.7 2 4.3E-05 35.2 6.7 106 123-229 5-127 (368)
355 COG4455 ImpE Protein of avirul 88.7 3.2 7E-05 33.1 7.6 64 119-182 7-70 (273)
356 cd02682 MIT_AAA_Arch MIT: doma 88.5 3.5 7.6E-05 26.9 6.6 25 150-174 9-33 (75)
357 COG4455 ImpE Protein of avirul 88.4 4.2 9E-05 32.5 8.1 58 156-213 10-67 (273)
358 COG4941 Predicted RNA polymera 88.2 4.3 9.3E-05 34.5 8.5 96 126-222 309-406 (415)
359 PF14863 Alkyl_sulf_dimr: Alky 88.2 2.3 5E-05 31.4 6.3 54 146-199 69-122 (141)
360 COG3947 Response regulator con 87.9 2.5 5.4E-05 35.2 6.9 57 117-173 283-339 (361)
361 COG2909 MalT ATP-dependent tra 87.7 9.4 0.0002 36.4 11.2 98 114-211 416-527 (894)
362 PF11817 Foie-gras_1: Foie gra 87.5 5 0.00011 32.5 8.6 61 114-174 179-245 (247)
363 PF10345 Cohesin_load: Cohesin 87.5 16 0.00036 33.7 12.9 101 110-211 56-169 (608)
364 PRK15180 Vi polysaccharide bio 87.5 2 4.4E-05 38.2 6.4 96 119-214 329-424 (831)
365 TIGR03504 FimV_Cterm FimV C-te 87.3 1.3 2.9E-05 25.6 3.7 25 151-175 3-27 (44)
366 PF12162 STAT1_TAZ2bind: STAT1 87.3 0.65 1.4E-05 22.7 1.9 16 1-16 7-22 (23)
367 KOG3617|consensus 87.0 6.6 0.00014 37.5 9.6 64 147-210 858-941 (1416)
368 TIGR02561 HrpB1_HrpK type III 86.8 11 0.00024 28.1 9.3 67 149-215 12-78 (153)
369 PF04212 MIT: MIT (microtubule 86.1 3 6.5E-05 26.4 5.3 31 112-142 4-34 (69)
370 PF15015 NYD-SP12_N: Spermatog 86.0 1.9 4.2E-05 37.6 5.4 60 118-177 233-292 (569)
371 PF10952 DUF2753: Protein of u 85.3 7.2 0.00016 28.1 7.2 99 115-223 3-125 (140)
372 smart00386 HAT HAT (Half-A-TPR 85.2 3.1 6.7E-05 21.2 4.4 29 161-189 1-29 (33)
373 PF09670 Cas_Cas02710: CRISPR- 84.4 27 0.00058 30.4 12.7 62 114-175 132-197 (379)
374 cd02681 MIT_calpain7_1 MIT: do 83.9 3.5 7.7E-05 27.0 4.9 31 112-142 5-35 (76)
375 KOG1258|consensus 83.8 11 0.00023 34.4 9.3 83 130-212 62-145 (577)
376 PF07939 DUF1685: Protein of u 83.6 2.9 6.3E-05 26.1 4.0 41 4-44 1-48 (64)
377 PF04053 Coatomer_WDAD: Coatom 83.5 14 0.00029 32.9 9.9 30 179-208 345-374 (443)
378 COG3914 Spy Predicted O-linked 83.3 13 0.00029 33.9 9.6 92 124-215 41-136 (620)
379 PF10952 DUF2753: Protein of u 82.7 7.6 0.00016 28.0 6.4 60 150-209 4-78 (140)
380 cd02683 MIT_1 MIT: domain cont 81.8 4.3 9.3E-05 26.6 4.7 30 113-142 6-35 (77)
381 KOG2041|consensus 81.7 10 0.00022 35.6 8.3 85 110-206 793-877 (1189)
382 KOG2758|consensus 81.4 7.1 0.00015 33.0 6.8 80 132-211 114-197 (432)
383 COG4649 Uncharacterized protei 81.4 23 0.00049 27.4 10.7 97 113-209 94-195 (221)
384 COG5107 RNA14 Pre-mRNA 3'-end 81.4 36 0.00079 30.4 11.3 92 123-214 442-535 (660)
385 PF06957 COPI_C: Coatomer (COP 81.0 12 0.00026 32.9 8.4 117 111-227 202-346 (422)
386 PF11846 DUF3366: Domain of un 80.7 9.1 0.0002 29.6 7.1 50 128-178 126-175 (193)
387 KOG2422|consensus 80.7 46 0.001 30.5 13.5 98 113-213 342-451 (665)
388 cd02680 MIT_calpain7_2 MIT: do 80.3 4.4 9.5E-05 26.5 4.3 31 112-142 5-35 (75)
389 PF09205 DUF1955: Domain of un 79.5 18 0.0004 26.6 7.6 33 178-210 117-149 (161)
390 cd02678 MIT_VPS4 MIT: domain c 79.1 7 0.00015 25.3 5.1 31 112-142 5-35 (75)
391 KOG4563|consensus 78.7 12 0.00026 32.1 7.4 63 108-170 36-106 (400)
392 PF12854 PPR_1: PPR repeat 78.5 6.6 0.00014 21.0 4.0 25 181-205 7-31 (34)
393 PF04053 Coatomer_WDAD: Coatom 78.3 22 0.00048 31.6 9.4 32 143-174 343-374 (443)
394 KOG3783|consensus 78.3 15 0.00033 33.1 8.2 66 149-214 451-524 (546)
395 cd02680 MIT_calpain7_2 MIT: do 78.0 5.6 0.00012 25.9 4.2 34 129-177 3-36 (75)
396 smart00745 MIT Microtubule Int 77.7 8.4 0.00018 24.9 5.2 31 112-142 7-37 (77)
397 cd02683 MIT_1 MIT: domain cont 76.6 7.1 0.00015 25.5 4.5 22 154-175 13-34 (77)
398 PF01239 PPTA: Protein prenylt 76.5 8.8 0.00019 19.9 4.6 26 167-192 3-28 (31)
399 COG2909 MalT ATP-dependent tra 76.0 57 0.0012 31.4 11.6 83 113-195 458-551 (894)
400 PF09205 DUF1955: Domain of un 75.1 27 0.00059 25.7 7.4 64 114-177 86-150 (161)
401 KOG0890|consensus 75.0 61 0.0013 34.7 12.3 102 110-213 1667-1787(2382)
402 COG5107 RNA14 Pre-mRNA 3'-end 74.0 32 0.0007 30.7 8.9 73 104-176 33-105 (660)
403 PF12854 PPR_1: PPR repeat 73.9 9.7 0.00021 20.3 3.9 27 146-172 6-32 (34)
404 cd02677 MIT_SNX15 MIT: domain 73.8 9.6 0.00021 24.8 4.6 30 113-142 6-35 (75)
405 cd02656 MIT MIT: domain contai 73.5 12 0.00027 24.0 5.1 30 113-142 6-35 (75)
406 PRK11619 lytic murein transgly 73.5 58 0.0013 30.5 11.2 80 129-209 295-374 (644)
407 KOG0985|consensus 73.4 37 0.00081 33.5 9.8 55 113-172 1104-1158(1666)
408 cd02684 MIT_2 MIT: domain cont 73.3 10 0.00022 24.7 4.5 31 112-142 5-35 (75)
409 PF05186 Dpy-30: Dpy-30 motif; 73.1 5 0.00011 22.9 2.7 26 11-40 14-39 (42)
410 PF07219 HemY_N: HemY protein 72.7 29 0.00063 24.1 8.0 31 112-142 58-88 (108)
411 KOG0985|consensus 72.5 41 0.00088 33.3 9.8 62 145-211 1102-1163(1666)
412 smart00299 CLH Clathrin heavy 71.9 34 0.00074 24.6 9.0 81 124-206 18-107 (140)
413 PF02064 MAS20: MAS20 protein 71.9 17 0.00038 26.0 5.9 37 186-222 68-105 (121)
414 KOG2561|consensus 71.4 41 0.00088 29.9 8.9 98 113-210 163-296 (568)
415 PRK15490 Vi polysaccharide bio 71.2 56 0.0012 30.1 10.2 79 125-205 20-98 (578)
416 PF04190 DUF410: Protein of un 70.7 57 0.0012 26.7 12.1 97 111-207 8-116 (260)
417 PF13226 DUF4034: Domain of un 70.6 35 0.00075 28.3 8.1 66 131-196 61-148 (277)
418 cd02677 MIT_SNX15 MIT: domain 70.4 7.6 0.00016 25.3 3.5 32 130-176 4-35 (75)
419 cd00280 TRFH Telomeric Repeat 70.2 19 0.00042 27.9 6.0 51 119-170 117-167 (200)
420 PF01535 PPR: PPR repeat; Int 69.3 9.6 0.00021 19.1 3.2 25 184-208 3-27 (31)
421 smart00745 MIT Microtubule Int 68.7 11 0.00024 24.2 4.1 21 155-175 16-36 (77)
422 COG5159 RPN6 26S proteasome re 68.7 70 0.0015 26.9 9.9 48 117-164 7-62 (421)
423 KOG0292|consensus 67.1 1.3E+02 0.0028 29.4 12.0 118 110-227 988-1130(1202)
424 PF04212 MIT: MIT (microtubule 66.5 18 0.00039 22.7 4.7 23 153-175 11-33 (69)
425 PF09797 NatB_MDM20: N-acetylt 66.0 23 0.00051 30.4 6.6 46 127-172 197-242 (365)
426 PF08771 Rapamycin_bind: Rapam 65.7 20 0.00044 24.7 5.0 73 156-228 23-98 (100)
427 KOG1464|consensus 65.7 20 0.00044 29.7 5.7 53 124-176 38-94 (440)
428 PF08238 Sel1: Sel1 repeat; I 65.1 19 0.00041 19.2 4.1 13 163-175 24-36 (39)
429 PF12753 Nro1: Nuclear pore co 64.8 10 0.00022 32.9 4.0 47 163-211 334-392 (404)
430 KOG3783|consensus 64.6 28 0.00062 31.4 6.8 80 132-211 252-333 (546)
431 COG4941 Predicted RNA polymera 64.2 66 0.0014 27.6 8.5 69 122-190 338-408 (415)
432 cd02679 MIT_spastin MIT: domai 63.7 21 0.00045 23.5 4.5 14 129-142 5-18 (79)
433 smart00671 SEL1 Sel1-like repe 63.7 17 0.00037 19.0 3.6 13 162-174 20-32 (36)
434 PF02064 MAS20: MAS20 protein 63.4 38 0.00083 24.3 6.2 33 116-148 66-98 (121)
435 cd02681 MIT_calpain7_1 MIT: do 63.2 21 0.00045 23.3 4.4 25 152-176 11-35 (76)
436 cd02684 MIT_2 MIT: domain cont 62.0 27 0.00058 22.7 4.8 18 158-175 17-34 (75)
437 COG4802 FtrB Ferredoxin-thiore 61.8 17 0.00036 25.1 3.8 38 4-41 1-38 (110)
438 COG4649 Uncharacterized protei 61.7 75 0.0016 24.7 8.0 76 116-192 135-211 (221)
439 TIGR00756 PPR pentatricopeptid 60.8 21 0.00045 18.1 4.0 26 184-209 3-28 (35)
440 KOG0276|consensus 60.8 76 0.0016 29.5 8.8 79 124-207 648-747 (794)
441 KOG2581|consensus 60.5 45 0.00097 29.3 7.0 61 121-181 217-281 (493)
442 COG2178 Predicted RNA-binding 60.4 81 0.0018 24.7 9.0 95 113-208 29-148 (204)
443 PF03745 DUF309: Domain of unk 60.4 39 0.00084 21.0 6.8 53 117-169 3-61 (62)
444 KOG3677|consensus 60.2 24 0.00053 31.0 5.4 93 117-213 239-339 (525)
445 KOG2758|consensus 59.8 68 0.0015 27.4 7.8 67 110-176 126-196 (432)
446 COG2015 Alkyl sulfatase and re 59.8 36 0.00078 30.6 6.5 57 113-169 452-508 (655)
447 PF02184 HAT: HAT (Half-A-TPR) 59.7 23 0.0005 19.0 3.4 26 128-154 2-27 (32)
448 KOG1464|consensus 59.4 39 0.00084 28.2 6.2 94 114-208 66-172 (440)
449 PF08311 Mad3_BUB1_I: Mad3/BUB 58.7 60 0.0013 23.3 6.7 80 127-208 40-126 (126)
450 cd02679 MIT_spastin MIT: domai 58.2 21 0.00046 23.5 3.8 33 162-209 4-36 (79)
451 KOG0890|consensus 57.4 44 0.00094 35.8 7.5 87 117-203 1453-1540(2382)
452 KOG0687|consensus 56.4 1.3E+02 0.0028 25.8 10.7 102 110-211 101-211 (393)
453 PRK15490 Vi polysaccharide bio 55.7 56 0.0012 30.1 7.3 73 152-224 13-85 (578)
454 KOG2041|consensus 55.2 33 0.00073 32.3 5.7 75 126-208 747-823 (1189)
455 PF05053 Menin: Menin; InterP 54.4 1.5E+02 0.0033 27.3 9.5 69 127-210 274-347 (618)
456 PF08311 Mad3_BUB1_I: Mad3/BUB 53.9 80 0.0017 22.6 10.2 44 131-174 81-126 (126)
457 cd02656 MIT MIT: domain contai 53.8 27 0.00059 22.3 3.9 18 158-175 17-34 (75)
458 PF09797 NatB_MDM20: N-acetylt 53.6 44 0.00096 28.7 6.2 44 162-205 198-241 (365)
459 COG5187 RPN7 26S proteasome re 53.4 1.4E+02 0.003 25.3 8.9 31 147-177 115-145 (412)
460 PF15469 Sec5: Exocyst complex 53.3 99 0.0021 23.5 8.9 27 195-221 153-180 (182)
461 PF12739 TRAPPC-Trs85: ER-Golg 53.0 1.6E+02 0.0035 25.9 12.1 97 114-210 209-329 (414)
462 PF07219 HemY_N: HemY protein 53.0 74 0.0016 22.0 6.9 45 151-195 63-107 (108)
463 TIGR00985 3a0801s04tom mitocho 53.0 48 0.0011 24.7 5.4 39 185-223 94-134 (148)
464 TIGR02710 CRISPR-associated pr 52.9 1.6E+02 0.0034 25.7 11.6 63 109-171 124-195 (380)
465 PF13041 PPR_2: PPR repeat fam 52.8 43 0.00093 19.2 6.6 23 152-174 8-30 (50)
466 KOG3616|consensus 52.7 58 0.0013 31.1 6.9 20 187-206 771-790 (1636)
467 PF13812 PPR_3: Pentatricopept 52.6 31 0.00067 17.5 4.2 24 184-207 4-27 (34)
468 PF13934 ELYS: Nuclear pore co 52.5 1.2E+02 0.0026 24.2 10.4 90 114-209 79-168 (226)
469 PF05053 Menin: Menin; InterP 51.1 40 0.00088 30.8 5.5 47 128-174 294-345 (618)
470 KOG4014|consensus 50.5 1.2E+02 0.0027 23.8 7.9 50 126-177 86-142 (248)
471 KOG0276|consensus 50.2 1E+02 0.0023 28.6 7.9 33 110-142 663-695 (794)
472 PF12583 TPPII_N: Tripeptidyl 50.2 83 0.0018 23.0 6.0 44 114-157 77-120 (139)
473 PF12753 Nro1: Nuclear pore co 49.0 27 0.00058 30.4 4.0 33 128-162 333-365 (404)
474 cd00215 PTS_IIA_lac PTS_IIA, P 48.8 54 0.0012 22.5 4.8 32 110-141 12-43 (97)
475 PF09670 Cas_Cas02710: CRISPR- 48.6 1.8E+02 0.0039 25.2 10.2 63 149-211 133-199 (379)
476 KOG2997|consensus 48.5 43 0.00093 28.4 5.0 42 110-151 16-57 (366)
477 KOG3807|consensus 48.4 1.8E+02 0.0039 25.1 10.3 49 118-166 280-330 (556)
478 PF02197 RIIa: Regulatory subu 47.7 30 0.00065 19.2 2.8 27 11-41 6-33 (38)
479 TIGR00823 EIIA-LAC phosphotran 47.7 51 0.0011 22.7 4.5 32 110-141 14-45 (99)
480 KOG1538|consensus 47.6 41 0.00088 31.5 5.0 65 154-224 780-844 (1081)
481 PF04840 Vps16_C: Vps16, C-ter 47.5 1.7E+02 0.0038 24.7 9.5 76 114-203 209-284 (319)
482 PF15297 CKAP2_C: Cytoskeleton 47.2 1.7E+02 0.0037 25.1 8.4 68 114-181 103-174 (353)
483 PRK09591 celC cellobiose phosp 47.1 52 0.0011 22.9 4.6 32 110-141 17-48 (104)
484 PF02255 PTS_IIA: PTS system, 47.0 56 0.0012 22.3 4.7 32 110-141 11-42 (96)
485 cd02678 MIT_VPS4 MIT: domain c 46.8 55 0.0012 21.0 4.4 18 158-175 17-34 (75)
486 KOG4151|consensus 46.1 42 0.0009 31.7 5.0 78 108-185 86-165 (748)
487 COG5187 RPN7 26S proteasome re 46.0 1.8E+02 0.004 24.6 9.7 103 110-212 112-223 (412)
488 KOG0889|consensus 45.6 2.9E+02 0.0064 31.4 11.2 77 147-223 2812-2896(3550)
489 KOG4563|consensus 45.3 49 0.0011 28.6 4.9 55 151-205 45-107 (400)
490 KOG4459|consensus 45.2 1.1E+02 0.0024 27.2 7.1 108 113-221 31-174 (471)
491 KOG2114|consensus 45.1 1.6E+02 0.0034 28.5 8.5 31 112-142 367-397 (933)
492 PF04348 LppC: LppC putative l 45.0 7.2 0.00016 35.6 0.0 103 110-212 21-129 (536)
493 cd00280 TRFH Telomeric Repeat 44.9 71 0.0015 24.9 5.3 50 153-203 117-166 (200)
494 TIGR02508 type_III_yscG type I 44.6 83 0.0018 22.0 5.1 16 121-136 47-62 (115)
495 KOG2422|consensus 44.5 2.6E+02 0.0056 26.0 9.4 81 107-187 278-383 (665)
496 KOG0567|consensus 44.4 1.8E+02 0.004 24.1 10.4 87 118-208 174-260 (289)
497 PF04190 DUF410: Protein of un 44.2 1.8E+02 0.0038 23.8 9.0 35 176-210 135-170 (260)
498 smart00777 Mad3_BUB1_I Mad3/BU 44.0 1.2E+02 0.0026 21.8 6.5 55 146-206 68-124 (125)
499 PF10938 YfdX: YfdX protein; 43.8 1.4E+02 0.0029 22.4 8.6 98 112-209 1-145 (155)
500 KOG3677|consensus 43.7 30 0.00066 30.4 3.5 55 152-210 240-301 (525)
No 1
>KOG1308|consensus
Probab=100.00 E-value=1.5e-32 Score=222.77 Aligned_cols=227 Identities=44% Similarity=0.731 Sum_probs=207.3
Q ss_pred CCHHHHHHHHHHHHHHhhCCCCCChhhhhhHHHHHHHcCCCCCCCCCCCCCC--CCCCCC---CCCCCCCCCCCCCCCCc
Q psy13481 4 LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPSKAQSDA--PKPEKP---FTTPEPSAPEEESEESD 78 (231)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~g~~~p~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~e~~ 78 (231)
|+..+|..|+.||.+|+.+|..+|.+++.|+|+|..++|+++||.....+.. .....+ ..+++..++++.+++++
T Consensus 1 ~~~~~ll~l~~F~~~~k~~~~~l~~~~~~flr~~~~s~g~~vpp~~~k~~~~e~~k~e~~~~~~~ee~~~~~e~s~~~~~ 80 (377)
T KOG1308|consen 1 MSSPKLLILCAFVKMCKQDPSFLHTTEMIFLREWVESAGAKVPPAGQKAKSEENTKAEASISKSVEESLKAPEVSSPESD 80 (377)
T ss_pred CCchhHHHhhhHHHHhccCchhhcccchhHHHHHHHhccCcCCCCCCcCcccccccccCCcccccccccccCCCCCCCcc
Confidence 4667899999999999999999999999999999999999999985444432 111111 22234556677788999
Q ss_pred hhhccCCCCCCCCCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy13481 79 PELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYL 158 (231)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~ 158 (231)
.+++..|+| +++.+.++.|++.+.+++.+..+.+...+..+..++..|.+++||++|+.+|.++|.++.+|..+|.+++
T Consensus 81 ~~~d~egvi-epd~d~pq~MGds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l 159 (377)
T KOG1308|consen 81 LEIDGEGVI-EPDTDAPQEMGDSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFL 159 (377)
T ss_pred hhccCCCcc-ccCCCcchhhchhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceee
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhhccC
Q psy13481 159 QLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNLK 231 (231)
Q Consensus 159 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~k~~ 231 (231)
++++...||++|..++.++|+....|..+|.+.+.+|+|++|.++|+.+++++.+..+.+|+++|++++++|+
T Consensus 160 kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~ 232 (377)
T KOG1308|consen 160 KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIE 232 (377)
T ss_pred eccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>KOG0553|consensus
Probab=99.85 E-value=1.6e-20 Score=150.90 Aligned_cols=119 Identities=33% Similarity=0.536 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
++...+..++..|+.+++.++|.+|+..|++||+++|+++.+|.+||.+|.++|.|..|+++|+.||.++|.+.++|..+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN 226 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~ 226 (231)
|.+|..+|++++|+..|++++.++|+++ .+.-|+....+
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999977 44444443333
No 3
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.75 E-value=4.1e-17 Score=121.91 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=101.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy13481 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG 195 (231)
Q Consensus 116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g 195 (231)
++.+|..+...|++++|+..|++++.++|++..+|+++|.++..+|++.+|+..|++++.++|.++.+++++|.++..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481 196 KWEEAAVDLRNACKIDFDEQ-ADEWLKEVTP 225 (231)
Q Consensus 196 ~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~ 225 (231)
++++|+..|++++++.|++. .......+..
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999999999875 4444444433
No 4
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.71 E-value=3.2e-16 Score=133.65 Aligned_cols=115 Identities=27% Similarity=0.435 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~ 193 (231)
..+...|..++..|+|.+|+.+|+++|+++|+++.+|+++|.+|..+|+|.+|+.++++++.++|.++.+|+.+|.+|..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481 194 LGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKL 228 (231)
Q Consensus 194 ~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~ 228 (231)
+|+|++|+..|+++++++|++. +..|+..+...+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999855 8888888877764
No 5
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.69 E-value=1.3e-15 Score=113.16 Aligned_cols=103 Identities=16% Similarity=0.043 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
.+....++..|..++..|++++|...|+-+..++|.+...|+++|.|+..+|+|.+||..|.+++.++|+++.+++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p 212 (231)
|+..+|+.+.|.+.|+.++...-
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999873
No 6
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.68 E-value=1.2e-15 Score=112.35 Aligned_cols=119 Identities=17% Similarity=0.224 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
.++.+....+.+|..++..|++++|+..|++++..+|++..+|+++|.++..+|++++|+..+++++.++|.++..++.+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 34555678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCHHH-HHHHHhhchh
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKIDFDEQA-DEWLKEVTPN 226 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~l~~~~~~ 226 (231)
|.++...|+++.|+..|+++++++|++.. ..+.+++...
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 99999999999999999999999998763 4455544443
No 7
>KOG0548|consensus
Probab=99.67 E-value=1e-15 Score=131.21 Aligned_cols=117 Identities=26% Similarity=0.484 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
++.+...+..|+.+|+.|+|..|+.+|+++|..+|+++.+|.|||.||.+++.+..|+.+++++++++|.+..+|..-|.
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA 434 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 34466777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN 226 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~ 226 (231)
+++.+.+|+.|++.|+.++.++|++. +..++++|.+.
T Consensus 435 al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999854 88888888763
No 8
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.63 E-value=1.5e-14 Score=120.62 Aligned_cols=105 Identities=24% Similarity=0.227 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
..+..++.+|..+...|++.+|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+|+++|.+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+...|++++|+..|+++++++|++.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999875
No 9
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.61 E-value=1.7e-14 Score=113.39 Aligned_cols=115 Identities=13% Similarity=0.123 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHhhCCCCHH
Q psy13481 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSY-LQLSK--PNACIRDCSVALKINPDSAA 182 (231)
Q Consensus 106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~Ai~~~~~al~~~p~~~~ 182 (231)
...++++...|..+|..+...|++++|+..|+++++++|+++.++..+|.++ ...|+ +.+|+..+++++.++|+++.
T Consensus 66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~ 145 (198)
T PRK10370 66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT 145 (198)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh
Confidence 3456677899999999999999999999999999999999999999999985 77787 59999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHH
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWL 220 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l 220 (231)
+++++|.+++..|+|++|+..|+++++++|.+. ...++
T Consensus 146 al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 146 ALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999999999999999999999999998633 33344
No 10
>KOG0543|consensus
Probab=99.61 E-value=1.9e-14 Score=120.35 Aligned_cols=122 Identities=23% Similarity=0.367 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---------------ALLYAKRGQSYLQLSKPNACIRDCSV 172 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~Ai~~~~~ 172 (231)
+....+...+..|+.+++.|+|..|+..|++|+..-.+. ..++.|++.|+.++++|..|+..|++
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 567778899999999999999999999999999874321 45889999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhc
Q psy13481 173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLN 229 (231)
Q Consensus 173 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k 229 (231)
+|.++|+|.+++|.+|.++..+|+|+.|+.+|+++++++|+|. +...+..+.+++++
T Consensus 283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 283 VLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865 66667777666553
No 11
>KOG1125|consensus
Probab=99.61 E-value=2.7e-15 Score=129.63 Aligned_cols=113 Identities=19% Similarity=0.285 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
++.....+|..++..|+|++|+++|+.||..+|++...|+++|..+..-.+..+||..|++|+++.|...+++|++|++|
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC-----------HHHHHHHHhhc
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFD-----------EQADEWLKEVT 224 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~-----------~~~~~~l~~~~ 224 (231)
..+|.|++|+++|-.||.+.+. +.++..|+-+.
T Consensus 509 mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~al 552 (579)
T KOG1125|consen 509 MNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLAL 552 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHH
Confidence 9999999999999999999765 34667666443
No 12
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.58 E-value=5.5e-13 Score=108.83 Aligned_cols=106 Identities=20% Similarity=0.121 Sum_probs=95.5
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHH
Q psy13481 113 SNEKKREAIHA-YNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYK 185 (231)
Q Consensus 113 a~~~~~~a~~~-~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~ 185 (231)
....+..|..+ +..|+|++|+..|+..+..+|++ +.+++.+|.+|+..|+|.+|+..|.+++..+|++ +.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 35567777776 66799999999999999999998 5899999999999999999999999999999885 67999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHH
Q psy13481 186 FRGRAYRLLGKWEEAAVDLRNACKIDFDEQADE 218 (231)
Q Consensus 186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 218 (231)
.+|.++..+|+++.|+..|+++++.+|+.....
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999999999999999876443
No 13
>KOG4234|consensus
Probab=99.55 E-value=2.3e-13 Score=103.98 Aligned_cols=116 Identities=32% Similarity=0.563 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
...+..++..|+.+|.+|+|.+|...|..||.+.|.. ..+|.|+|.++++++.+..||.+|.++|+++|.+-+++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 4567889999999999999999999999999999975 56889999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCH-HHHHHHHhhch
Q psy13481 185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDE-QADEWLKEVTP 225 (231)
Q Consensus 185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~l~~~~~ 225 (231)
..++.+|..+..|++|+.+|.+.+.++|.. .+.+...++-+
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 999999999999999999999999999974 35555544443
No 14
>KOG1126|consensus
Probab=99.52 E-value=1e-14 Score=127.82 Aligned_cols=126 Identities=16% Similarity=0.184 Sum_probs=88.6
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481 102 DIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181 (231)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~ 181 (231)
.+.++..++.....|...|+.+-.+++++.||.+|++|+.++|+++-+|..+|.=+.....|+.|..+|++||..+|+|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 33555566667777888888888888888888888888888777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK 227 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~ 227 (231)
.+||.+|.+|.++++++.|...|++|+.++|.+. ..-.+..++..+
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL 536 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh
Confidence 7777777777777777777777777777777654 333444444333
No 15
>KOG0550|consensus
Probab=99.51 E-value=9.8e-14 Score=115.96 Aligned_cols=122 Identities=30% Similarity=0.430 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
.+.....+...|+.++++|+|..|.+.|+.+|.++|++ +.+|.+||.+..++|+..+||.+|+.++.+++...+++
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 46677889999999999999999999999999999986 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhhcc
Q psy13481 185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNL 230 (231)
Q Consensus 185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~k~ 230 (231)
..+|.|+..+++|++|+.+|++|.+...+-...+.+++.+..+++.
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS 370 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998866788888887777754
No 16
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.51 E-value=1.1e-12 Score=93.91 Aligned_cols=104 Identities=22% Similarity=0.227 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKF 186 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~ 186 (231)
+..++..|..++..|++++|+..|.+++..+|++ ..+++.+|.++++.|+++.|+..|++++..+|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3567899999999999999999999999999876 5789999999999999999999999999999886 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCHHH
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQA 216 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 216 (231)
+|.++..+|++++|...|.+++...|++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 999999999999999999999999998763
No 17
>KOG1155|consensus
Probab=99.51 E-value=1.7e-13 Score=116.02 Aligned_cols=114 Identities=23% Similarity=0.212 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK 196 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 196 (231)
.-.|+-+..++++++|+.+|++|+++||....+|..+|.=|..+++...|+..|++|++++|.+.++|+.+|.+|..++.
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc
Confidence 34555666677888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhcc
Q psy13481 197 WEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLNL 230 (231)
Q Consensus 197 ~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k~ 230 (231)
..=|+-+|++|+.+.|+|+ .+..+.+|++++.++
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 8888888888888888655 777888888777653
No 18
>KOG4626|consensus
Probab=99.50 E-value=1.2e-13 Score=120.60 Aligned_cols=105 Identities=26% Similarity=0.326 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
+.-+.++.++|.++-++|++++|+.+|+++|++.|+.++++.|+|..|-.+|+.+.|+.+|++||.++|..+.++.++|.
T Consensus 385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS 464 (966)
T ss_pred hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence 34456666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+|...|+..+|+..|+.|+++.||.
T Consensus 465 i~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 465 IYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HhhccCCcHHHHHHHHHHHccCCCC
Confidence 7777777777777777777777773
No 19
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.49 E-value=1.5e-13 Score=89.32 Aligned_cols=67 Identities=34% Similarity=0.462 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q psy13481 146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG-KWEEAAVDLRNACKIDF 212 (231)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p 212 (231)
++..|..+|.+++..|+|++|+..|+++++++|+++.+|+++|.++..+| ++++|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45666666666666666666666666666666666666666666666666 56666666666666665
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.49 E-value=9.2e-13 Score=120.31 Aligned_cols=106 Identities=24% Similarity=0.336 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
+..+..+..+|..++..|++++|+..|++++.++|++..+|..+|.++..+|++++|+..|++++.++|+++.+|+.+|.
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 407 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45567778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
++..+|++++|+.+|++++.++|++.
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 88888888888888888888888753
No 21
>KOG0548|consensus
Probab=99.49 E-value=2.9e-13 Score=116.31 Aligned_cols=111 Identities=29% Similarity=0.481 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
+..+...|+.++..|+|+.|+.+|+.+|.++|.+...|.||..+|..+|+|.+|+.+..++++++|+++++|..+|.++.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV 223 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~ 223 (231)
.+|+|++|+..|...|+.+|++. ...-+.++
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a 113 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQA 113 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHh
Confidence 99999999999999999999975 44444443
No 22
>KOG4648|consensus
Probab=99.48 E-value=1.9e-13 Score=112.20 Aligned_cols=106 Identities=25% Similarity=0.378 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
-......+...|+.++++|.|++||++|.+++..+|.++..+.|||.+|+++++|..|..+|+.|+.++....++|..+|
T Consensus 93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRM 172 (536)
T ss_pred HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 34455668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+-..+|...+|.++++.++++.|.+
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 99999999999999999999999974
No 23
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.48 E-value=1.2e-12 Score=88.28 Aligned_cols=99 Identities=31% Similarity=0.477 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194 (231)
Q Consensus 115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~ 194 (231)
.++.+|..++..|++.+|+..++++++..|.+..+++.+|.++...+++.+|+..|++++.+.|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q psy13481 195 GKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 195 g~~~~A~~~~~~al~l~p~ 213 (231)
|+++.|...+.+++..+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
No 24
>KOG0547|consensus
Probab=99.48 E-value=2.5e-13 Score=115.68 Aligned_cols=106 Identities=25% Similarity=0.373 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
...+.++...|..++..|++-.|...|+.+|.++|.+...|..||.+|...++..+-..+|++|..+||.|+.+|+.+|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 34467777788888888888888888888888888887778888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+++.+++|++|+.+|++++.++|.+.
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhh
Confidence 88888888888888888888888764
No 25
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.47 E-value=3e-12 Score=98.43 Aligned_cols=116 Identities=22% Similarity=0.383 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
....+..++.+|..+...|++++|+.+|++++...|+. ..++.++|.++..+|++++|+..+.+++.++|.+..++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 45567889999999999999999999999999987764 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCHH--HHHHHHhhc
Q psy13481 186 FRGRAYRLLGK--------------WEEAAVDLRNACKIDFDEQ--ADEWLKEVT 224 (231)
Q Consensus 186 ~lg~~~~~~g~--------------~~~A~~~~~~al~l~p~~~--~~~~l~~~~ 224 (231)
.+|.++..+|+ +++|...+++++.++|++. +..|++...
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 165 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcC
Confidence 99999999998 6889999999999999864 666665543
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.47 E-value=1.1e-12 Score=119.69 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
++.....+..+|..+...|++++|+..|+++++.+|+++.+|+++|.+++.+|++++|+.+|++++.++|++..+++++|
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 34456678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV 223 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~ 223 (231)
.++..+|++++|+..|++++..+|++. +...+..+
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~ 476 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGEL 476 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 999999999999999999999988753 34344333
No 27
>KOG4626|consensus
Probab=99.46 E-value=3.1e-13 Score=118.04 Aligned_cols=104 Identities=23% Similarity=0.279 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
+....++.++|+.+-..|+..+|+.+|++++.++|+.+++.+|+|.++...|.++.|+..|.++++.+|..+.+..++|.
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLAS 396 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHH
Confidence 33445556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
+|..+|++++|+.+|+.++++.|.
T Consensus 397 i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhcCch
Confidence 666666666666666666666665
No 28
>KOG0547|consensus
Probab=99.45 E-value=9.3e-13 Score=112.24 Aligned_cols=101 Identities=31% Similarity=0.553 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
+...-+..++.+|+.++.+|+|++||.+|++||.+.|+.+.+|.||+.||..+|++++.++++.++++++|+..++++.+
T Consensus 110 ~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RR 189 (606)
T KOG0547|consen 110 ERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRR 189 (606)
T ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 44566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q psy13481 188 GRAYRLLGKWEEAAVDLRNAC 208 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al 208 (231)
+.++..+|++.+|+.+..-..
T Consensus 190 A~A~E~lg~~~eal~D~tv~c 210 (606)
T KOG0547|consen 190 ASAHEQLGKFDEALFDVTVLC 210 (606)
T ss_pred HHHHHhhccHHHHHHhhhHHH
Confidence 999999999999999887443
No 29
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.45 E-value=3.9e-13 Score=87.41 Aligned_cols=67 Identities=27% Similarity=0.503 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCC
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS-KPNACIRDCSVALKINP 178 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~Ai~~~~~al~~~p 178 (231)
++..|..+|..++..|+|++|+..|+++++++|+++.+|+++|.++..+| ++.+|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 36789999999999999999999999999999999999999999999999 79999999999999998
No 30
>PRK15331 chaperone protein SicA; Provisional
Probab=99.44 E-value=4.7e-12 Score=94.64 Aligned_cols=118 Identities=13% Similarity=0.002 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
+.....+..|..++..|++++|...|+-....+|.+...|..+|.|+..+++|++|+..|..+..++++++...+..|.|
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhh
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKL 228 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~ 228 (231)
+..+|+...|..+|..++..--+....++.....+.++
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALK 152 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999994333445554444444443
No 31
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=3.4e-12 Score=99.61 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
..+.....+|..++..|++..|...+++||+.+|++..+|..+|.+|.+.|..+.|-+.|++|+.++|++..+++|.|..
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 34567778888999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q psy13481 191 YRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l 210 (231)
++.+|++++|...|++|+..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 113 LCAQGRPEEAMQQFERALAD 132 (250)
T ss_pred HHhCCChHHHHHHHHHHHhC
Confidence 88888888888888887753
No 32
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.41 E-value=2e-11 Score=93.43 Aligned_cols=114 Identities=20% Similarity=0.237 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
...+..++..|..+...|++++|+..|++++.+.|+. +.+|+++|.++...|++++|+..|++++.++|.+...+.+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3457888999999999999999999999999997763 4689999999999999999999999999999999999999
Q ss_pred HHHHHH-------HcCCHH-------HHHHHHHHHHhcCCCH--HHHHHHHhh
Q psy13481 187 RGRAYR-------LLGKWE-------EAAVDLRNACKIDFDE--QADEWLKEV 223 (231)
Q Consensus 187 lg~~~~-------~~g~~~-------~A~~~~~~al~l~p~~--~~~~~l~~~ 223 (231)
+|.++. .+|+++ +|+..|++++..+|++ ....|+..+
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~ 164 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKIT 164 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHh
Confidence 999999 777766 6667777788889863 355555443
No 33
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.40 E-value=1.1e-12 Score=88.82 Aligned_cols=82 Identities=28% Similarity=0.461 Sum_probs=74.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy13481 125 NDGKFEDAVNAYSEAIKLNPS--SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAV 202 (231)
Q Consensus 125 ~~~~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 202 (231)
..|+|+.|+..|+++++..|. +..+++.+|.|+++.|+|.+|+..+++ +..++.+....+.+|.|+..+|+|++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 577888899999999999999999999 88999999999999999999999999999
Q ss_pred HHHHH
Q psy13481 203 DLRNA 207 (231)
Q Consensus 203 ~~~~a 207 (231)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 34
>KOG1155|consensus
Probab=99.40 E-value=5.3e-12 Score=107.08 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
-++....+|...|..++..++...|++.|++|++++|.+..+|+.+|++|--++-+--|+-.|++|+...|.+...|.-+
T Consensus 359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL 438 (559)
T KOG1155|consen 359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL 438 (559)
T ss_pred cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH
Confidence 34556778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCH-HHHHHHHhhchhhh
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKIDFDE-QADEWLKEVTPNKL 228 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~l~~~~~~~~ 228 (231)
|.||..+++.++|+++|.+|+.....+ .+...+.++.++++
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999998753 35666666666554
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=4.8e-12 Score=114.18 Aligned_cols=107 Identities=16% Similarity=0.019 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q psy13481 109 DIDKSNEKKREAIHAYN---------DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~---------~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~ 179 (231)
+++.+..+..+|.++.. .+++.+|+..++++++++|+++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~ 370 (553)
T PRK12370 291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI 370 (553)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34445566666655442 245788999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 180 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus 371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999999999999999999998754
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=8e-12 Score=112.74 Aligned_cols=117 Identities=14% Similarity=0.001 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
..+++++..+..+|..+...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..+++++.++|.++.+++.
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 34566678888999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCHH-HHHHHHhh
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKID-FDEQ-ADEWLKEV 223 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~-p~~~-~~~~l~~~ 223 (231)
++.+++..|++++|+..+++++... |++. +...+..+
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~ 450 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF 450 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 8888888999999999999999875 5543 23334333
No 37
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.38 E-value=1.1e-11 Score=117.34 Aligned_cols=102 Identities=16% Similarity=0.028 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...+..+|.++.+.|++++|+..|++++.++|+++.+++++|.++...|++++|+..|++++.++|+++.+++++|.++.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCH
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+|++++|+..|++++.++|+.
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999975
No 38
>KOG0624|consensus
Probab=99.36 E-value=4.6e-12 Score=104.09 Aligned_cols=106 Identities=23% Similarity=0.319 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
.+.++.....+|..++.+|.+..|+..|..|++.+|++..++++||.+|+.+|+-..|+.++.++|++.|+...+...+|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 45668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.++..+|+++.|..+|...+..+|.+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999964
No 39
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.36 E-value=5.3e-12 Score=94.24 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
..++.....+..+|.++...|++++|+..|++++.++|+++.+|+++|.++..+|++++|+..|++++.++|+++..+.+
T Consensus 52 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 52 MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 34455688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q psy13481 187 RGRAYRLL 194 (231)
Q Consensus 187 lg~~~~~~ 194 (231)
+|.+...+
T Consensus 132 ~~~~~~~l 139 (144)
T PRK15359 132 RQNAQIMV 139 (144)
T ss_pred HHHHHHHH
Confidence 99987654
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=2.6e-11 Score=101.21 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~ 180 (231)
.+++.+..++.+|..+...|++++|+..|+++++++|++..+|.++|.+++..|++++|+.+|++++.++|++
T Consensus 93 l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 93 LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3456678999999999999999999999999999999999999999999999999999999999988888764
No 41
>KOG1126|consensus
Probab=99.35 E-value=7.2e-12 Score=110.15 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
+..+.++..+|..+.....|+.|..+|+.||..+|.+..+|+.+|.+|.++++++.|..+|++|+++||.|....+.+|.
T Consensus 452 p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~ 531 (638)
T KOG1126|consen 452 PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGR 531 (638)
T ss_pred CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhH
Confidence 33455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
++..+|+.++|+..|.+|+.++|.+
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 5555555555555555555555543
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=8.1e-11 Score=92.89 Aligned_cols=106 Identities=22% Similarity=0.236 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN--PDSAAAYKF 186 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--p~~~~~~~~ 186 (231)
.+.....+..+|..+...|++++|+..|++++...|.+..++.++|.++...|++++|+..+++++... +.....+..
T Consensus 61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 140 (234)
T TIGR02521 61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN 140 (234)
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence 344455666666666677777777777777777766666666677777777777777777777766643 344556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+|.++...|++++|...|.+++..+|++
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 7777777777777777777777776654
No 43
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.33 E-value=8.5e-12 Score=80.07 Aligned_cols=64 Identities=22% Similarity=0.425 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181 (231)
Q Consensus 118 ~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~ 181 (231)
.+|..++..|+|++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|++++.++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3455566666666666666666666666666666666666666666666666666666666543
No 44
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.33 E-value=4e-11 Score=96.45 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA---LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA---AYKF 186 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~ 186 (231)
+..++..|..++..|+|++|+..|++++..+|+++ .+++.+|.+++..|++.+|+..|+++++.+|+++. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 67889999999999999999999999999999875 68899999999999999999999999999998876 7999
Q ss_pred HHHHHHHc--------CCHHHHHHHHHHHHhcCCCHH
Q psy13481 187 RGRAYRLL--------GKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 187 lg~~~~~~--------g~~~~A~~~~~~al~l~p~~~ 215 (231)
+|.++... |++++|+..|++++..+|++.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 99999987 899999999999999999864
No 45
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.32 E-value=3.6e-11 Score=110.11 Aligned_cols=116 Identities=8% Similarity=-0.021 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
..-+..+.+++.+|.+....|++++|...+..++++.|++..++.++|.++.+++++++|+..+++++..+|+++.+++.
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 34456688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHh
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKE 222 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~ 222 (231)
+|.++..+|++++|+..|++++..+|++. +.-.+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~ 196 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQ 196 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999999999999999999888743 4433333
No 46
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.32 E-value=5.1e-11 Score=94.66 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
+.+...+..+|...+..|+|..|+..++++..+.|+++.+|..+|.+|-+.|+++.|...|.+++++.|.++.+..|+|.
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm 176 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGM 176 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence 33455666699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCH-HHHHHHH
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDE-QADEWLK 221 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~l~ 221 (231)
.+...|+++.|...+..+...-+.+ .+.+.+.
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 9999999999999999998887743 3444443
No 47
>PLN02789 farnesyltranstransferase
Probab=99.31 E-value=6.1e-11 Score=99.59 Aligned_cols=121 Identities=15% Similarity=0.111 Sum_probs=106.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhhCCCC
Q psy13481 104 EVSEEDIDKSNEKKREAIHAYNDG-KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKP--NACIRDCSVALKINPDS 180 (231)
Q Consensus 104 ~~~~~~~~~a~~~~~~a~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~Ai~~~~~al~~~p~~ 180 (231)
.+...+++...+|..++.++...| ++.+++..+++++..+|++..+|+.|+.++.++|++ .+++..++++++++|+|
T Consensus 62 ~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN 141 (320)
T PLN02789 62 DVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN 141 (320)
T ss_pred HHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc
Confidence 334456778899999999999998 689999999999999999999999999999999974 78899999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT 224 (231)
Q Consensus 181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~ 224 (231)
..+|..+|+++..+|+|++++.++.++++++|.+. ++.....+.
T Consensus 142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 142 YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999753 554444443
No 48
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.30 E-value=6e-11 Score=93.20 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=85.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q psy13481 126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY-RLLGK--WEEAAV 202 (231)
Q Consensus 126 ~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~ 202 (231)
.++.++++..++++++.+|++..+|..+|.+|..+|+++.|+..|++++.++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 577899999999999999999999999999999999999999999999999999999999999985 67787 599999
Q ss_pred HHHHHHhcCCCHH
Q psy13481 203 DLRNACKIDFDEQ 215 (231)
Q Consensus 203 ~~~~al~l~p~~~ 215 (231)
.++++++++|++.
T Consensus 132 ~l~~al~~dP~~~ 144 (198)
T PRK10370 132 MIDKALALDANEV 144 (198)
T ss_pred HHHHHHHhCCCCh
Confidence 9999999999864
No 49
>KOG4642|consensus
Probab=99.30 E-value=1.2e-11 Score=96.92 Aligned_cols=114 Identities=25% Similarity=0.411 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
..+..+...|+.++...+|..|+..|.++|.++|+.+.+|.+++.||+++++++.+..++.+++++.|+..++.+.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC------CCHHHHHHHHhhc
Q psy13481 191 YRLLGKWEEAAVDLRNACKID------FDEQADEWLKEVT 224 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~------p~~~~~~~l~~~~ 224 (231)
......|.+|+..+++|..+. +.+.+...|+.+.
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 999999999999999996652 3455555555543
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=1.3e-10 Score=91.77 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLN--PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
..+...|..++..|++++|+..|.+++... +.....+.++|.++...|++.+|+..+.+++..+|.+..++..+|.++
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 344444555555555555555555555432 233444555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~ 213 (231)
...|++++|...+++++.+.|+
T Consensus 180 ~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC
Confidence 5555555555555555555443
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=3.7e-11 Score=93.88 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=102.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHH
Q psy13481 105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI--NPDSAA 182 (231)
Q Consensus 105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~--~p~~~~ 182 (231)
....++....+|..+|..+...|..+.|-+.|++|+.++|++.++++|.|..++..|+|++|...|++|+.- .+..+.
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~ 140 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSD 140 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcch
Confidence 345677778999999999999999999999999999999999999999999999999999999999999974 356778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+|-|+|.|....|+.+.|.+.|++++.++|+..
T Consensus 141 t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 141 TLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred hhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 999999999999999999999999999999853
No 52
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.28 E-value=1.5e-10 Score=92.97 Aligned_cols=106 Identities=23% Similarity=0.218 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHH
Q psy13481 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFRG 188 (231)
Q Consensus 115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~lg 188 (231)
.+|..|..++..|+|..|...|...|+..|++ +.++|++|.+++.+|+|..|...|..++.-.|.+ +.+++.+|
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 38999999999999999999999999999987 7899999999999999999999999999999876 46899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHH
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDEQADEWL 220 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l 220 (231)
.|...+|+.++|+..|+++++.+|+.++...-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999999999999997654443
No 53
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.28 E-value=2e-11 Score=78.36 Aligned_cols=65 Identities=25% Similarity=0.330 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 151 ~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+.+|..++..|+|++|+..|++++..+|.++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999863
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.27 E-value=3.2e-11 Score=99.73 Aligned_cols=115 Identities=20% Similarity=0.173 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
.+...+...|..+.+.|++++|+..|+++++++|++..++..++.++...|++.++...+.......|.++..+..+|.+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTP 225 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~ 225 (231)
+..+|++++|+..|+++++.+|+|. ....+..+..
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE 259 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred hccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999864 4444444443
No 55
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.27 E-value=1.2e-10 Score=110.49 Aligned_cols=105 Identities=25% Similarity=0.226 Sum_probs=92.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWE 198 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 198 (231)
.+......|++++|+..|+++++++|+ ..+|.++|.++.++|++++|+..|++++.++|+++.++.++|.++...|+++
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 344444559999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481 199 EAAVDLRNACKIDFDEQ-ADEWLKEVT 224 (231)
Q Consensus 199 ~A~~~~~~al~l~p~~~-~~~~l~~~~ 224 (231)
+|+..|+++++++|++. +...+..+.
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999864 444443333
No 56
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.25 E-value=1.3e-10 Score=106.79 Aligned_cols=105 Identities=14% Similarity=0.251 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFED----AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~----Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
++....+..+|..+...|++++ |+..|+++++++|++..++..+|.++...|++++|+..+++++.++|+++.++.
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3345566667777777777775 677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 186 FRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+|.++...|++++|+..|++++..+|++
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 77777777777777777777777777765
No 57
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.24 E-value=1.1e-10 Score=107.20 Aligned_cols=108 Identities=13% Similarity=0.069 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
..+++.+..+..+|..+...|++++|+..|++++.++|+++.++.++|.++...|++++|+..|++++..+|.+..++..
T Consensus 278 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 278 QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 34466678899999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+|.++...|++++|+..|+++++++|++
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 8999999999999999999999999974
No 58
>KOG4555|consensus
Probab=99.24 E-value=8.2e-10 Score=79.14 Aligned_cols=102 Identities=27% Similarity=0.409 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----HHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA----AAYKFR 187 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~----~~~~~l 187 (231)
....+-..|..+...|+.+.|++.|.++|.+.|..+.+|+|++.++.-.|+.++|+.++++++++...-. .++..+
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 3456677889999999999999999999999999999999999999999999999999999999975543 488999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
|.+|+.+|+-+.|..+|+.|-.+...
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 99999999999999999999888754
No 59
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.1e-10 Score=93.23 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK---PNACIRDCSVALKINPDSAAA 183 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~Ai~~~~~al~~~p~~~~~ 183 (231)
..++.++..|..+|.+++..|++..|...|.+|+++.|+++..+..+|.+++...+ ..++...+++++.++|.|..+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 45677899999999999999999999999999999999999999999999988774 679999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+.+|..++..|+|.+|...|+..+...|.+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999998864
No 60
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.22 E-value=2.3e-10 Score=104.88 Aligned_cols=109 Identities=12% Similarity=-0.057 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
.+-.|+...++...|.++.+.+++++|+..+++++..+|+++.+++.+|.++.++|+|++|+..|++++..+|++..++.
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~ 192 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV 192 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence 34567778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 186 FRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
++|.++..+|+.++|...|++++....+.
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999987653
No 61
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.21 E-value=7e-10 Score=81.28 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA---AYKF 186 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~ 186 (231)
+..++..|...++.|+|.+|++.|+.+....|.. ..+...+|.+|++.++|.+|+..+++-|+++|.|+. +++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 5788999999999999999999999999998865 678899999999999999999999999999999875 8999
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHhcCCCHH
Q psy13481 187 RGRAYRLLGK---------------WEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 187 lg~~~~~~g~---------------~~~A~~~~~~al~l~p~~~ 215 (231)
+|.+++.+.. ...|...|++.+...|+.+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 9999999987 8999999999999999876
No 62
>KOG0376|consensus
Probab=99.21 E-value=1.8e-11 Score=104.57 Aligned_cols=116 Identities=30% Similarity=0.443 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
+..+...|+.++..++|+.|+..|.+||+++|+.+.++.+|+.++++.++|..|+.++.+||+++|...++|+.+|.++.
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKL 228 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~ 228 (231)
.++.+.+|...|+....+.|++. +...+.+|..-..
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999865 7777777765444
No 63
>KOG0551|consensus
Probab=99.19 E-value=1.8e-10 Score=94.23 Aligned_cols=103 Identities=27% Similarity=0.447 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
.|..++..|+.+++.++|..|+..|.++|+..-.+ +.+|+|||.|.+.+|+|..|+.+|.+++.++|.|.++++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 68899999999999999999999999999985443 67899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+.|+..+.++.+|..+++..+.++-+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999888888888887777553
No 64
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.19 E-value=2.6e-10 Score=83.72 Aligned_cols=91 Identities=12% Similarity=0.091 Sum_probs=82.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 134 NAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 134 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
+.|++++..+|++..+.+.+|.+++..|++.+|+..+++++.++|.++.+++.+|.++..+|++.+|...|++++.++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH-HHHHHHhhc
Q psy13481 214 EQ-ADEWLKEVT 224 (231)
Q Consensus 214 ~~-~~~~l~~~~ 224 (231)
+. ....+..+.
T Consensus 84 ~~~~~~~la~~~ 95 (135)
T TIGR02552 84 DPRPYFHAAECL 95 (135)
T ss_pred ChHHHHHHHHHH
Confidence 53 444444333
No 65
>KOG1173|consensus
Probab=99.19 E-value=1.3e-10 Score=100.78 Aligned_cols=116 Identities=21% Similarity=0.260 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL----NPS---SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~----~p~---~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~ 182 (231)
|.+...+...|.+++..+.|.+|+.+|+.++.. .+. -...+.|+|.++.++++|.+||..++++|.+.|.++.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 444567778899999999999999999999943 222 2456899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTP 225 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~ 225 (231)
++..+|.+|..+|+++.|+.+|.+++.+.|++. +.+.++...+
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 6666665443
No 66
>PLN02789 farnesyltranstransferase
Probab=99.19 E-value=3.4e-10 Score=95.10 Aligned_cols=120 Identities=11% Similarity=0.048 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKF--EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~--~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
..++....+|..++.++...|+. .+++.+++++++.+|.+..+|..+|-++..+|+|++++.+++++|+++|+|..+|
T Consensus 100 ~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW 179 (320)
T PLN02789 100 EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW 179 (320)
T ss_pred HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence 44566677889899888888874 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc---CCH----HHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481 185 KFRGRAYRLL---GKW----EEAAVDLRNACKIDFDEQ-ADEWLKEVTPN 226 (231)
Q Consensus 185 ~~lg~~~~~~---g~~----~~A~~~~~~al~l~p~~~-~~~~l~~~~~~ 226 (231)
+.+|.+...+ |.+ ++++.+..+++.++|++. ++..++.+...
T Consensus 180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 9999998876 333 468888889999999865 77766666544
No 67
>KOG0545|consensus
Probab=99.18 E-value=6.6e-10 Score=87.66 Aligned_cols=119 Identities=22% Similarity=0.294 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHcCChHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPS----------SALLYAKRGQSYLQLSKPNACIR 168 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~----------~~~~~~~la~~~~~~~~~~~Ai~ 168 (231)
.+.......+.+.|+.++..|+|.+|...|..||.. .|. ...++.|.+.|++..|+|-++++
T Consensus 172 deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevle 251 (329)
T KOG0545|consen 172 DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLE 251 (329)
T ss_pred hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence 345666788999999999999999999999999864 333 35688899999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--HHHHHHHHhhch
Q psy13481 169 DCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD--EQADEWLKEVTP 225 (231)
Q Consensus 169 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~l~~~~~ 225 (231)
++..++...|.|.++|+.+|.++...-+..+|..+|.++++++|. ....+.++-+..
T Consensus 252 h~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~ 310 (329)
T KOG0545|consen 252 HCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLEN 310 (329)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997 334444544443
No 68
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.18 E-value=5.7e-10 Score=89.74 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CChHHHHHHHHHHHhhCC
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL---LYAKRGQSYLQL--------SKPNACIRDCSVALKINP 178 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~la~~~~~~--------~~~~~Ai~~~~~al~~~p 178 (231)
+.....++.+|..++..|++++|+..|+++++.+|++.. +++.+|.+++.. |++.+|+..|++++..+|
T Consensus 67 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 67 PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 334467899999999999999999999999999998765 799999999987 889999999999999999
Q ss_pred CCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCH----HHHHHHHhhchhh
Q psy13481 179 DSAAAY-----------------KFRGRAYRLLGKWEEAAVDLRNACKIDFDE----QADEWLKEVTPNK 227 (231)
Q Consensus 179 ~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~l~~~~~~~ 227 (231)
.+..++ ..+|.+|...|++.+|+..|++++...|+. .+...+..+...+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l 216 (235)
T TIGR03302 147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKL 216 (235)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc
Confidence 986543 367888999999999999999999998863 3444555544443
No 69
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.16 E-value=1.3e-09 Score=93.77 Aligned_cols=100 Identities=18% Similarity=0.108 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc
Q psy13481 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-AAAYKFRGRAYRLL 194 (231)
Q Consensus 116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~-~~~~~~lg~~~~~~ 194 (231)
+..+|..+...|++++|+..|+++++.+|++..++..+|.++.+.|++++|+..+++++..+|.+ ..++..++.+|...
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 44556666666666666666666666666666666666666666666666666666666666654 34555666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCHH
Q psy13481 195 GKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 195 g~~~~A~~~~~~al~l~p~~~ 215 (231)
|++++|...+++++..+|+..
T Consensus 263 g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 263 GDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred CCHHHHHHHHHHHHHhCCCch
Confidence 666666666666666666543
No 70
>KOG2076|consensus
Probab=99.14 E-value=2.2e-09 Score=97.48 Aligned_cols=103 Identities=20% Similarity=0.244 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
.+..+...|+.++..|++++|...+.++|+.+|.++.+|+.+|.+|..+|+..+|...+-.|-.++|.+...|..++...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
..+|++..|.-+|.+|++.+|.+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999986
No 71
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.14 E-value=1.6e-09 Score=101.42 Aligned_cols=104 Identities=12% Similarity=0.084 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
..+..+..+|..+...|++.+|+..|+++++++|.++.++..+|.++...|++.+|+..+++++..+|+++. +..+|.+
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~ 125 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYV 125 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 346678899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+...|++++|+..|+++++++|++.
T Consensus 126 l~~~g~~~~Al~~l~~al~~~P~~~ 150 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRAPQTQ 150 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999864
No 72
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.13 E-value=9.9e-10 Score=102.89 Aligned_cols=115 Identities=19% Similarity=0.205 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
.+++...+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|+ .+|+..+++++.+.|+++..+..+|
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 344566777888888888888888888888888888888888888888888888 7788889998888888888888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT 224 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~ 224 (231)
.++...|++++|+..|+++++++|.+. +...+..+.
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 881 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 999999999999999999999988643 444444443
No 73
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.13 E-value=8.4e-10 Score=107.50 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL--------------LYAKRGQSYLQLSKPNACIRDCSVA 173 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~--------------~~~~la~~~~~~~~~~~Ai~~~~~a 173 (231)
..+++...+..+|.+++..|++++|+.+|+++++.+|++.. ....+|.++...|++++|+..|+++
T Consensus 298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555677888888888888888888888888888887642 1234577888888888888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 174 LKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 174 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+.++|.+..+++.+|.++...|++++|+..|+++++++|++.
T Consensus 378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 888888899999999999999999999999999999999854
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.13 E-value=2.6e-10 Score=73.69 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=46.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 124 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
+..|+|++|+..|++++..+|++..+++.+|.+|++.|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777776666555543
No 75
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.13 E-value=1.9e-09 Score=100.93 Aligned_cols=111 Identities=12% Similarity=0.013 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...+..+|..+...|++++|+..|++++...|.+..++..+|.++...|++.+|+..+++++.++|++..+++.+|.++.
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~ 223 (231)
.+|+|++|...++++++.+|++.....+.+.
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999998755544443
No 76
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.12 E-value=5.5e-10 Score=73.16 Aligned_cols=66 Identities=23% Similarity=0.441 Sum_probs=40.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 121 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
..++..++|++|+.++++++.++|+++.+|..+|.+++.+|+|.+|+.+|+++++..|++..+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 345566666666666666666666666666666666666666666666666666666665554443
No 77
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.12 E-value=2.2e-09 Score=100.50 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
.+..+..+...|..++..|++++|+..|++++..+|++..++..+|.++...|++.+|+..+++++..+|.+..+++.+|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 200 (899)
T TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG 200 (899)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34456777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.++...|++++|...|++++.++|++.
T Consensus 201 ~~~~~~g~~~~A~~~~~~a~~~~p~~~ 227 (899)
T TIGR02917 201 DLLLSLGNIELALAAYRKAIALRPNNP 227 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCH
Confidence 888888888888888888888888753
No 78
>KOG0553|consensus
Probab=99.11 E-value=3e-10 Score=91.96 Aligned_cols=100 Identities=25% Similarity=0.272 Sum_probs=89.7
Q ss_pred CccccccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481 99 VATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178 (231)
Q Consensus 99 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p 178 (231)
.+.+.....-++.++-.+.++|.+|.+.|.|+.|+...+.+|.++|++..+|.++|.+|+.+|+|.+|+..|+++|+++|
T Consensus 101 v~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 101 VDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP 180 (304)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC
Confidence 33333334455677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHH
Q psy13481 179 DSAAAYKFRGRAYRLLGKWE 198 (231)
Q Consensus 179 ~~~~~~~~lg~~~~~~g~~~ 198 (231)
+|...+.+|.++-..+++..
T Consensus 181 ~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 181 DNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred CcHHHHHHHHHHHHHhcCCC
Confidence 99999999999988888766
No 79
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.11 E-value=3.6e-09 Score=85.72 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLY---AKRGQSYLQLSKPNACIRDCSVALKINPDSA---AAYKF 186 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~ 186 (231)
+..++..|..++..|+|++|+..|++++...|.+..+. +.+|.+|++.++|.+|+..+++.+..+|+++ .+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 56688999999999999999999999999999886554 8999999999999999999999999999875 48899
Q ss_pred HHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCHH
Q psy13481 187 RGRAYRLLG---------------K---WEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 187 lg~~~~~~g---------------~---~~~A~~~~~~al~l~p~~~ 215 (231)
+|.++..++ + ...|+..|+..++..|+..
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 999876665 1 2568899999999999854
No 80
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.10 E-value=2.9e-09 Score=84.01 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA---AAYK 185 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~ 185 (231)
++..++..|..++..|+|.+|+..|++++...|++ ..+.+.+|.++++.|+|..|+..+++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 36788999999999999999999999999998876 68899999999999999999999999999999875 4899
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCHH----HHHHHHhhch
Q psy13481 186 FRGRAYRLLG-----------KWEEAAVDLRNACKIDFDEQ----ADEWLKEVTP 225 (231)
Q Consensus 186 ~lg~~~~~~g-----------~~~~A~~~~~~al~l~p~~~----~~~~l~~~~~ 225 (231)
.+|.+++.+. ...+|+..|+..+...|+.. +...+..+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence 9999977654 34589999999999999843 4444444433
No 81
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.09 E-value=6.1e-10 Score=95.48 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALL---YAKRGQSYLQLSKPNACIRDCSVALKIN 177 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~Ai~~~~~al~~~ 177 (231)
..+++.+..++++|..++..|+|++|+..|+++|+++|++..+ |+|+|.+|..+|++++|+.++++|+++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4678889999999999999999999999999999999999854 9999999999999999999999999984
No 82
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.09 E-value=5.8e-09 Score=75.02 Aligned_cols=96 Identities=23% Similarity=0.132 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD---SAAAYKFR 187 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~---~~~~~~~l 187 (231)
..+++.|..+-..|+.++|+.+|++++...... ..++..+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467899999999999999999999999975544 678999999999999999999999999999898 78888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~ 209 (231)
+.++...|++++|+..+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988875
No 83
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.07 E-value=4.3e-09 Score=90.62 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
.....+..++..+...|++++|+..|.+++...|.+ ..++..+|.++...|++++|+..|++++..+|.+..+++
T Consensus 139 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 218 (389)
T PRK11788 139 FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASI 218 (389)
T ss_pred chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHH
Confidence 345677888999999999999999999999988865 336778999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 186 FRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+|.++...|++++|+..|++++..+|++
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 99999999999999999999999998874
No 84
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.07 E-value=1.1e-09 Score=71.72 Aligned_cols=69 Identities=29% Similarity=0.393 Sum_probs=63.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy13481 153 RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221 (231)
Q Consensus 153 la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~ 221 (231)
+..+|+..++|..|+.++++++.++|.++..|..+|.++..+|++++|...|+++++..|++.....+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999999999999876554443
No 85
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=5.5e-09 Score=89.58 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
.-...+|..|...+..|.+++|+..++..++..|+|+.++-.++.++++.++..+|++.+++++.++|..+..+.++|.+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhc
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLN 229 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k 229 (231)
+...|++.+|+..+...+.-+|++. .|.++.+.+..+.+
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 9999999999999999999999765 77777777766554
No 86
>KOG4162|consensus
Probab=99.06 E-value=1.9e-09 Score=96.51 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHhhCCCCHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIR--DCSVALKINPDSAAAYKF 186 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~--~~~~al~~~p~~~~~~~~ 186 (231)
++..+..++..|..+...|.+.+|...|..|+.++|++......+|.++.+.|+..-|.. .+..+++++|.|+++|+.
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 455678889999999999999999999999999999999999999999999999888777 999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+|.++..+|+.+.|..+|+.|+.+.+.+.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999988764
No 87
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.06 E-value=5e-09 Score=78.22 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
..+.+.+|..++..|++++|+..|+.++...|+. ..+..++|.+++..|+|++|+..++. +.-.+..+.++..+|.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 5677889999999999999999999999987655 45788899999999999999999966 3444556678889999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q psy13481 190 AYRLLGKWEEAAVDLRNAC 208 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al 208 (231)
++...|++++|+..|++|+
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999875
No 88
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.05 E-value=1e-09 Score=93.88 Aligned_cols=89 Identities=19% Similarity=0.262 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
..++..+..+..+|.+++..|++++|+..+++++.++|+++.+|+++|.+++.+|+|.+|+..|++++.++|++..+...
T Consensus 30 ~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 30 DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34555678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC
Q psy13481 187 RGRAYRLLG 195 (231)
Q Consensus 187 lg~~~~~~g 195 (231)
++.|...+.
T Consensus 110 l~~~~~kl~ 118 (356)
T PLN03088 110 IKECDEKIA 118 (356)
T ss_pred HHHHHHHHH
Confidence 999877664
No 89
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.03 E-value=2.5e-09 Score=104.18 Aligned_cols=103 Identities=15% Similarity=0.035 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
.+...+..+|..+...|++++|+..|+++++.+|++..++.++|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
+..+|++++|...|++++...|+
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCcc
Confidence 99999999999999999998764
No 90
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.00 E-value=4.8e-09 Score=79.41 Aligned_cols=97 Identities=28% Similarity=0.287 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q psy13481 129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK----------PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK-- 196 (231)
Q Consensus 129 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~-- 196 (231)
|+.|.+.++.....+|.+++.+++=|.++..+.+ +.+|+.-|+.||.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999999988865 5678889999999999999999999999988775
Q ss_pred ---------HHHHHHHHHHHHhcCCCHHHHHHHHhhch
Q psy13481 197 ---------WEEAAVDLRNACKIDFDEQADEWLKEVTP 225 (231)
Q Consensus 197 ---------~~~A~~~~~~al~l~p~~~~~~~l~~~~~ 225 (231)
|++|..+|++|...+|+++.+..-.++..
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 88899999999999999876655544443
No 91
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.99 E-value=4.6e-09 Score=78.31 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=76.3
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-H
Q psy13481 139 AIKLN-PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-A 216 (231)
Q Consensus 139 al~~~-p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~ 216 (231)
...+. ++..+..+.+|..++..|++++|...|+.+..++|.+...|++||.|+..+|+|++|+..|.+|+.++|++. .
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34456 778889999999999999999999999999999999999999999999999999999999999999999865 4
Q ss_pred HHHHHhhc
Q psy13481 217 DEWLKEVT 224 (231)
Q Consensus 217 ~~~l~~~~ 224 (231)
...+..|.
T Consensus 106 ~~~ag~c~ 113 (157)
T PRK15363 106 PWAAAECY 113 (157)
T ss_pred HHHHHHHH
Confidence 44444444
No 92
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.98 E-value=2e-08 Score=89.66 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHH---------------------------------
Q psy13481 112 KSNEKKREAIHAYNDGK---FEDAVNAYSEAIKLNPSSALLYAKRGQ--------------------------------- 155 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~---~~~Ai~~~~~al~~~p~~~~~~~~la~--------------------------------- 155 (231)
.+..++.+|..++..++ +..|+.+|++|++++|+++.+|..++.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45667778887776655 789999999999999998665554443
Q ss_pred -----------HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHH
Q psy13481 156 -----------SYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWL 220 (231)
Q Consensus 156 -----------~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l 220 (231)
.+...|++++|...+++|+.++| +..+|..+|.++...|++++|...|++|+.++|.+..+-|.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~ 492 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWI 492 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHH
Confidence 33345668889999999999998 57899999999999999999999999999999986544443
No 93
>PRK11906 transcriptional regulator; Provisional
Probab=98.97 E-value=1.5e-08 Score=87.22 Aligned_cols=116 Identities=14% Similarity=-0.013 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q psy13481 109 DIDKSNEKKREAIHAYND---------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~---------~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~ 179 (231)
+++.+.++..+|.+++.. .+..+|..+-++|++++|+++.++..+|.++...++++.|+..|++|+.++|+
T Consensus 291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn 370 (458)
T PRK11906 291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD 370 (458)
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc
Confidence 444455666666665543 45678999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q psy13481 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVT 224 (231)
Q Consensus 180 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~ 224 (231)
.+.+|+.+|+++...|+.++|...+++|++++|.......++.+.
T Consensus 371 ~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 371 IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 999999999999999999999999999999999866555555543
No 94
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.96 E-value=3.6e-09 Score=68.23 Aligned_cols=59 Identities=27% Similarity=0.295 Sum_probs=55.5
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 157 YLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 157 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
++..|+|++|+..|++++..+|++..+++.+|.||...|++++|...+.+++..+|++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 36789999999999999999999999999999999999999999999999999999965
No 95
>KOG2076|consensus
Probab=98.96 E-value=1.5e-08 Score=92.17 Aligned_cols=105 Identities=21% Similarity=0.147 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
++.....++.+|.++-.+|+.++|+..+-.|-.++|.+...|..++....++|++.+|+-+|.+||+.+|.+...++.++
T Consensus 169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers 248 (895)
T KOG2076|consen 169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERS 248 (895)
T ss_pred CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
..|..+|++..|...|.+.+.+.|.
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999994
No 96
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=5.5e-09 Score=81.25 Aligned_cols=110 Identities=19% Similarity=0.161 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
+...+..++.+|..+-+.|-+.-|.-.|.+++.++|+-+.+++.+|..+...|+|+.|...|+.+++++|.+--+..|+|
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 34458889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCHHHHH
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDEQADE 218 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 218 (231)
.+++.-|+++-|...+.+-..-||.+....
T Consensus 141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~ 170 (297)
T COG4785 141 IALYYGGRYKLAQDDLLAFYQDDPNDPFRS 170 (297)
T ss_pred eeeeecCchHhhHHHHHHHHhcCCCChHHH
Confidence 999999999999999999999999876433
No 97
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=1.8e-08 Score=86.48 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=96.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481 105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
+....|++...+-..+..++..++..+|++.+++++.+.|+....+.++|.+|++.|++.+|+..++..+..+|+++..|
T Consensus 332 L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w 411 (484)
T COG4783 332 LIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGW 411 (484)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHH
Confidence 34455677777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 185 KFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
..++.+|..+|+-.++...+.....+.-+
T Consensus 412 ~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 412 DLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 99999988888877777766666666554
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=1e-08 Score=87.22 Aligned_cols=105 Identities=16% Similarity=0.021 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----HH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA----AA 183 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~----~~ 183 (231)
..+.....+...|..+...|++++|+..++++++++|++..++..+|.++...|++++|+..+++++...|.++ ..
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence 44555677778899999999999999999999999999999999999999999999999999999999987543 35
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
|..+|.++...|++++|+..|.+++...|
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 67899999999999999999999987776
No 99
>KOG3060|consensus
Probab=98.94 E-value=1.6e-08 Score=80.25 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
-......|..+-..|+|++|+++|+..++-+|++...+-+.-.+...+|+..+||+.++..++..+.+..+|..++.+|.
T Consensus 86 ~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 86 KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL 165 (289)
T ss_pred hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34445566666666677777777776666666666665555555556666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCH
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~ 214 (231)
..|+|+.|..+|+..+-+.|.+
T Consensus 166 ~~~~f~kA~fClEE~ll~~P~n 187 (289)
T KOG3060|consen 166 SEGDFEKAAFCLEELLLIQPFN 187 (289)
T ss_pred hHhHHHHHHHHHHHHHHcCCCc
Confidence 6666666666666666666654
No 100
>KOG3060|consensus
Probab=98.94 E-value=1.1e-08 Score=81.26 Aligned_cols=114 Identities=16% Similarity=0.080 Sum_probs=101.3
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q psy13481 101 TDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180 (231)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~ 180 (231)
++..+..+++.+...++..-...-..|+--+||..++.-++..+++.++|..++.+|+..|+|.+|..+++.++-++|.+
T Consensus 108 ~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n 187 (289)
T KOG3060|consen 108 YYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN 187 (289)
T ss_pred HHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc
Confidence 33344556677777777777778888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCH
Q psy13481 181 AAAYKFRGRAYRLLG---KWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 181 ~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~ 214 (231)
+..+..+|.+++-+| +++-|.++|.++++++|.+
T Consensus 188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 188 PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 999999999998888 5777999999999999943
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.92 E-value=1.4e-08 Score=80.95 Aligned_cols=105 Identities=18% Similarity=0.273 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
.+++... ...+..+...|+-+.+..+..++...+|.+...+...|...+..|+|..|+..++++..+.|+++.+|..+|
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 3444555 778889999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+|...|++++|...|.+++++.|.+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~ 167 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNE 167 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCC
Confidence 99999999999999999999999874
No 102
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.91 E-value=5.4e-09 Score=89.78 Aligned_cols=70 Identities=20% Similarity=0.165 Sum_probs=67.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 142 LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA---YKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
.+|+++.+|+++|.+|+.+|+|++|+..|+++|+++|++..+ |+++|.+|..+|++++|+.+|++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999854 9999999999999999999999999983
No 103
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=2.5e-08 Score=81.69 Aligned_cols=117 Identities=17% Similarity=0.132 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
..++..+...|-...+|++||+.-++.+.+.+.. +.+|+.+|..+....+.+.|+..+.+|++-+|.+..+-..+
T Consensus 141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~l 220 (389)
T COG2956 141 EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIIL 220 (389)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhh
Confidence 3455666777777788888888888877776654 66778888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC--HHHHHHHHhhchhhhc
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKIDFD--EQADEWLKEVTPNKLN 229 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~l~~~~~~~~k 229 (231)
|.++...|+|+.|++.|+.+++.||+ ..+...+.+++..+.+
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 88888888888888888888888887 4466667777666554
No 104
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.90 E-value=4.2e-08 Score=85.53 Aligned_cols=121 Identities=14% Similarity=0.034 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--HH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLY--AKRGQSYLQLSKPNACIRDCSVALKINPDSA--AA 183 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~--~~ 183 (231)
..+++...+...|..+...|++++|+..++++++..|++.... .-+.......++...++..++++++..|+++ ..
T Consensus 258 ~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~l 337 (409)
T TIGR00540 258 HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCI 337 (409)
T ss_pred HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHH
Confidence 3334678888899999999999999999999999999987532 3344445556889999999999999999999 88
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCHHHHHHHHhhchhhh
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLR--NACKIDFDEQADEWLKEVTPNKL 228 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~--~al~l~p~~~~~~~l~~~~~~~~ 228 (231)
+..+|++++.+|+|++|.++|+ .+++.+|++.....+.++..+++
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence 8999999999999999999999 68889999887777777776554
No 105
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.90 E-value=1.9e-09 Score=71.55 Aligned_cols=66 Identities=27% Similarity=0.362 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---C-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 145 SSALLYAKRGQSYLQLSKPNACIRDCSVALKIN---P-D---SAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~---p-~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
+-+.++.++|.+|..+|+|++|+.+|++++.+. + . .+.+++++|.++..+|++++|+..+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 334566666666666666666666666666542 1 1 2345666677777777777777777666654
No 106
>KOG1128|consensus
Probab=98.89 E-value=8e-09 Score=92.19 Aligned_cols=101 Identities=23% Similarity=0.333 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
+.+.+..|...+++++|.++..+++..++++|-....|+++|.+..++++++.|..+|.+++.++|++..+|.|++.+|.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 44556667777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCC
Q psy13481 193 LLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~ 213 (231)
.+|+..+|...+..|++.+.+
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCC
Confidence 999999999999999999854
No 107
>KOG1125|consensus
Probab=98.89 E-value=1.8e-08 Score=87.92 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=93.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK 196 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 196 (231)
+..|..++++|+..+|+-.|+.++..+|.++++|..||.++...++=..||..+++|++++|+|..++..||++|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy13481 197 WEEAAVDLRNACKIDFD 213 (231)
Q Consensus 197 ~~~A~~~~~~al~l~p~ 213 (231)
-..|+++|.+=+...|.
T Consensus 369 q~~Al~~L~~Wi~~~p~ 385 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPK 385 (579)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999988877654
No 108
>KOG0624|consensus
Probab=98.89 E-value=4.6e-08 Score=80.89 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~ 193 (231)
..+......++..|++..||+..+..|++.|.++.++..|+.||...|+...||.++..+-.+..+|...++.++..++.
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 44556667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCH
Q psy13481 194 LGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 194 ~g~~~~A~~~~~~al~l~p~~ 214 (231)
.|+.+.++...+.+++++|++
T Consensus 236 vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred hhhHHHHHHHHHHHHccCcch
Confidence 999999999999999999985
No 109
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.87 E-value=9.2e-09 Score=68.24 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL---N----PSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~---~----p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~ 177 (231)
++.+..+..+|.++...|+|++|+++|++++.+ . |..+.+++++|.++..+|++++|+..+++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 567889999999999999999999999999976 1 2236789999999999999999999999999863
No 110
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.87 E-value=3.9e-09 Score=87.22 Aligned_cols=103 Identities=24% Similarity=0.301 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
..|++...+..++..+...|+++++...+....+..|.++.+|..+|.++..+|++++|+.+|++++..+|+++..+..+
T Consensus 175 ~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~ 254 (280)
T PF13429_consen 175 LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAY 254 (280)
T ss_dssp H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccc
Confidence 34556677778888889999999999999998888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l 210 (231)
|.++...|+.++|...+++++..
T Consensus 255 a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 255 ADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHT------------------
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999999999988753
No 111
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.85 E-value=5.8e-08 Score=90.81 Aligned_cols=101 Identities=16% Similarity=0.064 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~ 193 (231)
...+..+...++.|++..|++.|+++++.+|+++.+...++.++...|++++|+..|++++.-.|.+...+..+|.++..
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555532222444444444444444444444442222223333333444444
Q ss_pred cCCHHHHHHHHHHHHhcCCCH
Q psy13481 194 LGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 194 ~g~~~~A~~~~~~al~l~p~~ 214 (231)
+|+|++|+..|+++++.+|++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n 135 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTN 135 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCC
Confidence 444444444444444444443
No 112
>KOG0543|consensus
Probab=98.84 E-value=5.1e-08 Score=82.20 Aligned_cols=100 Identities=19% Similarity=0.194 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...+.++|.++.+.++|.+|+...+++|.+.|+|..++|++|.++..+|+|+.|+.+|+++++++|.|-.+...+..+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HcCCHHHH-HHHHHHHHhcCC
Q psy13481 193 LLGKWEEA-AVDLRNACKIDF 212 (231)
Q Consensus 193 ~~g~~~~A-~~~~~~al~l~p 212 (231)
...++.+. .+.|.+.+..-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 77776665 788888887654
No 113
>KOG2002|consensus
Probab=98.81 E-value=7.5e-08 Score=88.42 Aligned_cols=112 Identities=21% Similarity=0.149 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
-.+..++.+|..+...|+|++|..+|.++++.+|++ .-.++.+|.+|++.|++..|+.+|++++..+|++......+|.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 345667777777777777777777777777777776 5667777777777777777777777777777777777777777
Q ss_pred HHHHcC----CHHHHHHHHHHHHhcCCCHH-HHHHHHh
Q psy13481 190 AYRLLG----KWEEAAVDLRNACKIDFDEQ-ADEWLKE 222 (231)
Q Consensus 190 ~~~~~g----~~~~A~~~~~~al~l~p~~~-~~~~l~~ 222 (231)
.|...+ ..+.|...+.++++..|.+. ++-.+.+
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 777765 55667777777777777543 4433333
No 114
>KOG0550|consensus
Probab=98.81 E-value=9.9e-09 Score=86.41 Aligned_cols=108 Identities=23% Similarity=0.320 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------------ALLYAKRGQSYLQLSKPNACIRDCSVA 173 (231)
Q Consensus 106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~~Ai~~~~~a 173 (231)
...+..++.+++.+|.+++-..+.+.|+.+|++++.++|+. ...|..+|.-.++.|+|..|.++|..+
T Consensus 196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred HhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 34566778999999999999999999999999999999976 456788899999999999999999999
Q ss_pred HhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 174 LKINPDS----AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 174 l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
|.++|.| +..|.+++.+...+|+..+|+.+...+++|+|.
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 9999986 457999999999999999999999999999975
No 115
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.79 E-value=1.9e-07 Score=81.15 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=103.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481 105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
+....+++.......|..+...|+.++|...++++++..| +.......+.+ ..+++.+++..+++.++.+|+++..+
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~ 331 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLW 331 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHH
Confidence 3445556677888899999999999999999999999544 55555444443 44999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhhc
Q psy13481 185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLN 229 (231)
Q Consensus 185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~k 229 (231)
..+|.++...|+|++|...|++++++.|++....++..+.++..+
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998877778777776543
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.79 E-value=6.8e-07 Score=66.63 Aligned_cols=119 Identities=21% Similarity=0.189 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AA 182 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~ 182 (231)
....+...+..+...+..+++..+...++..+..+|++ ..+...+|.+++..|+|++|+..|+.++...|+. ..
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 34456777888888889999999999999999999998 6778889999999999999999999999988665 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhh
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNK 227 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~ 227 (231)
+.+.++.++...|++++|+..++....-.....+..+...+.-..
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHC
Confidence 788999999999999999999977432222334555555555443
No 117
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=2e-07 Score=76.54 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA-AAYKFRG 188 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~-~~~~~lg 188 (231)
...+..+..+|..+....+++.|+..+.+|+..+|++..+-..+|.++...|+|..|+..++.+++.||... .+.-.+.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999999999999864 6888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~ 223 (231)
.||..+|+.++.+.++.++....++..+.-.+-++
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~l 291 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADL 291 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHH
Confidence 99999999999999999999999886554444443
No 118
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.78 E-value=2e-07 Score=79.38 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 144 PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
|....++..+|.++...|++.+|+..+++++.++|+++.++..+|.++...|++++|+..+++++...|.
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 3333444566778899999999999999999999999999999999999999999999999999998874
No 119
>KOG2003|consensus
Probab=98.74 E-value=3.3e-08 Score=84.42 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
++.++...|+..+.+|++++|.+.|++++.-+.....+++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34556667777788889999999999988887777888888888888888888888888887777777888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV 223 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~ 223 (231)
..+.+...|++.|.++..+-|++. +...+.++
T Consensus 569 e~led~aqaie~~~q~~slip~dp~ilskl~dl 601 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADL 601 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 888888888888888888888764 33334333
No 120
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.74 E-value=2e-07 Score=80.19 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~ 193 (231)
.....++..+...++-.+|+..+.+++..+|.++..+...|..++..++|+.|+..+++++.+.|.+...|+.|+.+|..
T Consensus 201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 34556788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhc
Q psy13481 194 LGKWEEAAVDLRNACKI 210 (231)
Q Consensus 194 ~g~~~~A~~~~~~al~l 210 (231)
+|+|+.|+..+..+--.
T Consensus 281 ~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 281 LGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHhcCcCC
Confidence 99999999888755333
No 121
>KOG1129|consensus
Probab=98.73 E-value=2.8e-08 Score=81.69 Aligned_cols=105 Identities=15% Similarity=0.083 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
+.-+.+...+...|.++-..+++++|+++|+.+++.+|.+.++....|.-|+.-++++-|+.+|++.+++.-.++..+++
T Consensus 284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~N 363 (478)
T KOG1129|consen 284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCN 363 (478)
T ss_pred hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhh
Confidence 33455566667777778888888888888888888888877777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
+|.|++..++++-++..|++|+..-
T Consensus 364 igLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 364 IGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred HHHHHHhhcchhhhHHHHHHHHhhc
Confidence 7777777777777777777777653
No 122
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.73 E-value=4.2e-08 Score=91.71 Aligned_cols=94 Identities=11% Similarity=0.109 Sum_probs=49.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy13481 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEE 199 (231)
Q Consensus 120 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 199 (231)
|..+...|+|++|++.|+++++.+|+++.++..++.++...+++++|+..+++++..+|.+... ..++.++..++++.+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~ 187 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH
Confidence 4455555555555555555555555555555555555555555555555555555555553332 333444444444444
Q ss_pred HHHHHHHHHhcCCCH
Q psy13481 200 AAVDLRNACKIDFDE 214 (231)
Q Consensus 200 A~~~~~~al~l~p~~ 214 (231)
|+..|++++..+|++
T Consensus 188 AL~~~ekll~~~P~n 202 (822)
T PRK14574 188 ALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHHHHhCCCC
Confidence 555555555555543
No 123
>KOG1840|consensus
Probab=98.70 E-value=1.1e-07 Score=84.06 Aligned_cols=107 Identities=22% Similarity=0.217 Sum_probs=94.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
.....+........+|..+..+|+|++|+..++.+++. +|........+|.+|..+++|.+|+..|++|+.+
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34456666778888999999999999999999999999 7777778888999999999999999999999987
Q ss_pred C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 177 N--------PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 177 ~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
. |..+.++.+||.+|...|++.+|..++.+|++|.
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 4 3445689999999999999999999999999885
No 124
>KOG1156|consensus
Probab=98.69 E-value=1.6e-07 Score=83.01 Aligned_cols=101 Identities=23% Similarity=0.275 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~ 193 (231)
..++..+.-.+..++|.+.+...+..+...|..++.+...|..+..+|+-++|......++..++.+.-.|+.+|.+++.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 45566666667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCH
Q psy13481 194 LGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 194 ~g~~~~A~~~~~~al~l~p~~ 214 (231)
-.+|++|+++|+.|++++|+|
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN 108 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDN 108 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCc
Confidence 777777777777777777765
No 125
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.69 E-value=1.9e-07 Score=71.31 Aligned_cols=92 Identities=13% Similarity=0.065 Sum_probs=77.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCH
Q psy13481 123 AYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFRGRAYRLLGKW 197 (231)
Q Consensus 123 ~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~ 197 (231)
++-...|..+...+...++.++.. ..+|+++|.++...|+|++|+..|++++.+.|++ +.+++++|.++...|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 344455667777776665565555 6788999999999999999999999999998764 45899999999999999
Q ss_pred HHHHHHHHHHHhcCCCH
Q psy13481 198 EEAAVDLRNACKIDFDE 214 (231)
Q Consensus 198 ~~A~~~~~~al~l~p~~ 214 (231)
++|+..|++++.++|..
T Consensus 89 ~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 89 TKALEYYFQALERNPFL 105 (168)
T ss_pred HHHHHHHHHHHHhCcCc
Confidence 99999999999999974
No 126
>KOG1173|consensus
Probab=98.67 E-value=1e-07 Score=83.11 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=103.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183 (231)
Q Consensus 104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~ 183 (231)
.+.+..|..+-.|+..|.-++.-|++.+|..+|.++..++|..+.+|...|..+.-.|..++|+.+|.+|-++.|.....
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP 382 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP 382 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch
Confidence 34456677788999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
...+|.=|..+++++.|.++|.+|+.+.|.+.
T Consensus 383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp 414 (611)
T KOG1173|consen 383 SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP 414 (611)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc
Confidence 88899999999999999999999999999864
No 127
>KOG1840|consensus
Probab=98.66 E-value=1.8e-07 Score=82.67 Aligned_cols=103 Identities=26% Similarity=0.303 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN--- 177 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--- 177 (231)
++.-+..+...|..+...++|.+|+..|++|+.+ +|..+.++.++|.+|.+.|+|.+|..+|++|+++.
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 3444556667999999999999999999999987 66668899999999999999999999999999885
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 178 -----PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 178 -----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
|.-...+.+++.++..++++++|+..+++++++.
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2335578999999999999999999999999874
No 128
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.65 E-value=2.3e-07 Score=71.22 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 143 NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
++..+.+++++|.++...|++++|+.+|++++.+.|+. ..+++++|.++..+|++++|+..|++++.+.|++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 33557789999999999999999999999999988764 46899999999999999999999999999999754
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.65 E-value=3.8e-07 Score=85.17 Aligned_cols=103 Identities=16% Similarity=0.015 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--------
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA-------- 181 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~-------- 181 (231)
+....++..+...+...+++++|+..++.+++.+|+...+|+.+|.+++..+++..+... .++.+.+.+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 344667777777887888888888888888888888888888777777777776665554 5555554444
Q ss_pred -----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 182 -----------AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 182 -----------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+++.+|.||..+|++++|...|+++++++|++
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n 149 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN 149 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc
Confidence 677777777777777777777777777777765
No 130
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.64 E-value=4.6e-07 Score=64.39 Aligned_cols=68 Identities=24% Similarity=0.207 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
...++.+|..+...|++.+|+..|.+++..+|++ ..+++.+|.++...|+++.|+..|+.++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 3578999999999999999999999999999887 5789999999999999999999999999999874
No 131
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.64 E-value=3.9e-07 Score=60.68 Aligned_cols=67 Identities=33% Similarity=0.459 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+++++|.+++..|++.+|+..+++++...|.+..+++.+|.++...|+++.|...|++++.+.|.+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 5788999999999999999999999999999999999999999999999999999999999999764
No 132
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.62 E-value=1.4e-06 Score=66.45 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIK-LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SAAAYKFRG 188 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~lg 188 (231)
+....+.+|+.+...|++.+|..+|++++. +..++...+..++.+.+..+++..|...+++..+.+|. .+.....+|
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 346678899999999999999999999986 57788999999999999999999999999999999984 677888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHH
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDEQADEWL 220 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l 220 (231)
.++...|.+..|...|+.++...|+..+.-..
T Consensus 168 R~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y 199 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYPGPQARIYY 199 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999986544333
No 133
>KOG2002|consensus
Probab=98.59 E-value=4e-07 Score=83.79 Aligned_cols=117 Identities=19% Similarity=0.139 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-AAA 183 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~-~~~ 183 (231)
.+..++.++..+|+.++..|+|..+..+..-++...-+. +..+|++|.+|..+|+|++|..+|..++..++++ .-.
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 445567888889999999999999999999998875433 5669999999999999999999999999999988 678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT 224 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~ 224 (231)
++.+|..|...|+++.|..+|++.++..|++. ....+.-+.
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 89999999999999999999999999999864 555555444
No 134
>KOG1129|consensus
Probab=98.59 E-value=8.2e-08 Score=79.00 Aligned_cols=110 Identities=12% Similarity=0.038 Sum_probs=90.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q psy13481 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP--S-SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180 (231)
Q Consensus 104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p--~-~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~ 180 (231)
.+..........+.+.|.+.+-.++++-++..|.+|+.... . -++.|+|+|.+....|++.-|.++|+-++..+++|
T Consensus 349 RiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 349 RILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 33334444456777888888888899999999999887643 2 37889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
..++.++|..-...|+.++|...+..|-...|+
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 999999999999999999999999998888886
No 135
>KOG4162|consensus
Probab=98.57 E-value=9.2e-07 Score=79.70 Aligned_cols=117 Identities=23% Similarity=0.130 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...|...|..+...++-++|..++.++-.++|..+..|+.+|.++...|++.+|...|..|+.++|+++.+...+|.++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34566677778888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHH--HHHHHHhcCCC-HHHHHHHHhhchhhhc
Q psy13481 193 LLGKWEEAAV--DLRNACKIDFD-EQADEWLKEVTPNKLN 229 (231)
Q Consensus 193 ~~g~~~~A~~--~~~~al~l~p~-~~~~~~l~~~~~~~~k 229 (231)
..|+..-|.+ .+..++++||. .++|..+.++......
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 9999999999 99999999997 5599999988876654
No 136
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.3e-06 Score=71.27 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q psy13481 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG---KWEEAAVD 203 (231)
Q Consensus 127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~ 203 (231)
...+.-+.-++.-+..||+++.-|..+|.+|+.+|++..|...|.+|+.+.|+|+..+..+|.+++... .-.++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 457788888999999999999999999999999999999999999999999999999999999877665 35678999
Q ss_pred HHHHHhcCCCHHH
Q psy13481 204 LRNACKIDFDEQA 216 (231)
Q Consensus 204 ~~~al~l~p~~~~ 216 (231)
|.+++++||++..
T Consensus 216 l~~al~~D~~~ir 228 (287)
T COG4235 216 LRQALALDPANIR 228 (287)
T ss_pred HHHHHhcCCccHH
Confidence 9999999998753
No 137
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.55 E-value=1.3e-05 Score=59.67 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----------------------ALLYAKRGQSYLQLSKPNACIRD 169 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~Ai~~ 169 (231)
....+...|......++...++..+.+++.+.... ..+...++..+...|++..|+..
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 34555666777888899999999999999884321 34566778889999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCHHHHHHHHhh
Q psy13481 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK-------IDFDEQADEWLKEV 223 (231)
Q Consensus 170 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------l~p~~~~~~~l~~~ 223 (231)
+++++.++|.+-.+|..+-.+|..+|+...|+..|++... +.|......+..++
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~i 145 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREI 145 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHh
Confidence 9999999999999999999999999999999999988854 35666655555443
No 138
>KOG1128|consensus
Probab=98.53 E-value=2.9e-07 Score=82.42 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
-....|+.+|.++.+.+++..|...|.+++.+.|++..+|+|++.+|.++++-.+|...+.+|+.-+-.|..+|-|.-.+
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlv 596 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLV 596 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCC
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p 212 (231)
....|.|++|+.+|.+.+.+.-
T Consensus 597 svdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhhcccHHHHHHHHHHHHHhhh
Confidence 9999999999999999988753
No 139
>KOG2003|consensus
Probab=98.52 E-value=5.1e-07 Score=77.30 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
..+..-..+++..|..+-..|+.++|+++|-+.-.+--+++.+++.++.+|..+.+..+||+++.++..+-|+++.++..
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 33444467788888888888888888888888777777788888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCH-HHHHHHH
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKIDFDE-QADEWLK 221 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~l~ 221 (231)
+|..|-..|+...|..++-...+..|.+ +..+|+.
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 8888888888766666666666666643 2455554
No 140
>KOG1156|consensus
Probab=98.52 E-value=3.6e-07 Score=80.90 Aligned_cols=107 Identities=13% Similarity=0.034 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
..+++...+...|..+...|+-++|..+...+++.++.+..+|.-+|.++...++|.+||.+|..|+.+.|+|...|.-+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 34444455555566666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+.....+++++.......+.+.+.|..
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 666666666665555555555555543
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.51 E-value=2.9e-07 Score=61.98 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~a 173 (231)
+...++.+|.+++..|+|.+|+..+++ +..++.+...++.+|.|++++|+|++|+..++++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 456777899999999999999999999 8889988899999999999999999999999875
No 142
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.50 E-value=9.6e-06 Score=70.77 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA-LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194 (231)
Q Consensus 116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~ 194 (231)
+...|..+...|+++.|..+|.++.+..|++. .+...++.++...|+++.|+..+++.++.+|+++.++..++.++...
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 44556666667777777777777777666654 34444577777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcC
Q psy13481 195 GKWEEAAVDLRNACKID 211 (231)
Q Consensus 195 g~~~~A~~~~~~al~l~ 211 (231)
|+|++|...+.+..+..
T Consensus 201 ~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 201 GAWQALDDIIDNMAKAG 217 (409)
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 77777777777777653
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=7.8e-07 Score=83.13 Aligned_cols=102 Identities=16% Similarity=0.093 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHH-----------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFED-----------------AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSV 172 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~-----------------Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~ 172 (231)
++....++..|..+++.+++.+ ++++|...+...+++-.+++.+|.||-++|++++|+..|++
T Consensus 62 P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 62 KKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred CcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445555566665555555444 44444445555555558999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 173 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
+++++|.|+.+++++|..|... +.++|+..+.+|+...-
T Consensus 142 ~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 142 LVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999998754
No 144
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.48 E-value=7.4e-06 Score=64.61 Aligned_cols=102 Identities=25% Similarity=0.328 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhhCC
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSK-----------PNACIRDCSVALKINP 178 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~-----------~~~Ai~~~~~al~~~p 178 (231)
..+.+.+|..++..|+|..|+..|++.++.+|++ ..+++.+|.+++.+.+ ..+|+..|+..+...|
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP 121 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP 121 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence 4677889999999999999999999999999987 5689999999877643 4589999999999999
Q ss_pred CCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 179 DSAAA-----------------YKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 179 ~~~~~-----------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
++..+ -+..|..|...|.|..|+.-++.+++-.|+.
T Consensus 122 ~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t 174 (203)
T PF13525_consen 122 NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT 174 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC
Confidence 97432 1346888999999999999999999999983
No 145
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.47 E-value=4.5e-06 Score=72.55 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=86.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLY-AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194 (231)
Q Consensus 116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~ 194 (231)
+...+......|+++.|..+|.++.+..|+...+. ...+.++...|++++|+..++++++.+|+++.++..++.+|...
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 33445666999999999999999999999885443 34599999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q psy13481 195 GKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 195 g~~~~A~~~~~~al~l~p~ 213 (231)
|+|++|+..+.+..+..+.
T Consensus 201 gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred HhHHHHHHHHHHHHHcCCC
Confidence 9999999888888877654
No 146
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.47 E-value=1.8e-07 Score=51.77 Aligned_cols=32 Identities=34% Similarity=0.525 Sum_probs=19.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy13481 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAA 201 (231)
Q Consensus 170 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 201 (231)
|+++|+++|+|+.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45666666666666666666666666666554
No 147
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.43 E-value=6.3e-07 Score=52.62 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
.+|..+|.+|..+|++++|+..|+++++.+|+|+.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666677777777777777777777777777666666654
No 148
>KOG1174|consensus
Probab=98.41 E-value=1.9e-06 Score=73.01 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
.++..|+..|..++..++|..|+.+-.++|+.+|++..++...|.++..+|+..+|+-.|+.|+.+.|.....|-.+-.+
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34667788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
|...|.+.+|...-+.+.+.-|.
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~ 400 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQN 400 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhc
Confidence 99999999988877777776654
No 149
>KOG1127|consensus
Probab=98.41 E-value=7.5e-07 Score=82.29 Aligned_cols=100 Identities=15% Similarity=0.068 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~ 193 (231)
..|..+|..+...+++..|+..|+-+++.+|++..+|..+|.+|...|+|..|+..|++|..++|.+.-+.+..+.....
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q psy13481 194 LGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 194 ~g~~~~A~~~~~~al~l~p~ 213 (231)
+|.|.+|+..+...+....+
T Consensus 643 ~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999988876543
No 150
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.41 E-value=1.3e-05 Score=64.20 Aligned_cols=103 Identities=14% Similarity=0.206 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA---AYKF 186 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~ 186 (231)
+..|+..|...++.|+|.+|+..|+.+...+|.+ ..+...++.++++.++|+.|+..+++-+.++|.+++ +++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 6789999999999999999999999999998876 567888999999999999999999999999998865 7888
Q ss_pred HHHHHHHcCC--------HHHHHHHHHHHHhcCCCHH
Q psy13481 187 RGRAYRLLGK--------WEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 187 lg~~~~~~g~--------~~~A~~~~~~al~l~p~~~ 215 (231)
.|.+++..=+ -..|...|+..+...|+.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 8888765433 4568889999999999854
No 151
>KOG1174|consensus
Probab=98.40 E-value=1.6e-06 Score=73.52 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~ 169 (231)
+.++.+..++...|..+...++.++|+-.|+.|+.+.|...+.|..+-.+|+..|++.+|...
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 345566788888889999999999999999999988888888888888888888875444333
No 152
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.39 E-value=3.7e-07 Score=50.45 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q psy13481 135 AYSEAIKLNPSSALLYAKRGQSYLQLSKPNACI 167 (231)
Q Consensus 135 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai 167 (231)
+|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 488999999999999999999999999999986
No 153
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.38 E-value=2.6e-06 Score=70.85 Aligned_cols=97 Identities=13% Similarity=-0.013 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy13481 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS--KPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG 195 (231)
Q Consensus 118 ~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g 195 (231)
....+++..++++.|...++.+-+.+.++.-....-|.+.+..| ++.+|...|+...+..+.++..++.++.|+..+|
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 34445556666666666666655554443222222222223333 3556666666655555555555566666666666
Q ss_pred CHHHHHHHHHHHHhcCCCH
Q psy13481 196 KWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 196 ~~~~A~~~~~~al~l~p~~ 214 (231)
+|++|...+..++..+|.+
T Consensus 216 ~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 216 HYEEAEELLEEALEKDPND 234 (290)
T ss_dssp -HHHHHHHHHHHCCC-CCH
T ss_pred CHHHHHHHHHHHHHhccCC
Confidence 6666666666666655553
No 154
>KOG3785|consensus
Probab=98.38 E-value=7.4e-06 Score=68.39 Aligned_cols=114 Identities=19% Similarity=0.155 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------------------
Q psy13481 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKP---------------------- 163 (231)
Q Consensus 106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~---------------------- 163 (231)
.++..+....| .|..++..|+|++|+..|+-+...+.-.+..+.++|.|++-+|.|
T Consensus 52 ~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfh 129 (557)
T KOG3785|consen 52 DREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFH 129 (557)
T ss_pred chhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 33444444444 788999999999999999999987777788999999999998885
Q ss_pred --------------------------------------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481 164 --------------------------------------NACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLR 205 (231)
Q Consensus 164 --------------------------------------~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 205 (231)
++||..|.+++.-+|.....-..++.||+.+.-|+-+...+.
T Consensus 130 lahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 130 LAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 445555555555555555555556666666666666666666
Q ss_pred HHHhcCCCHHHHHHHH
Q psy13481 206 NACKIDFDEQADEWLK 221 (231)
Q Consensus 206 ~al~l~p~~~~~~~l~ 221 (231)
-.++..||..+...++
T Consensus 210 vYL~q~pdStiA~NLk 225 (557)
T KOG3785|consen 210 VYLRQFPDSTIAKNLK 225 (557)
T ss_pred HHHHhCCCcHHHHHHH
Confidence 6666666655443333
No 155
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.37 E-value=7.7e-07 Score=49.03 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q psy13481 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPD 179 (231)
Q Consensus 149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~ 179 (231)
+|+++|.+|..+|+|++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4444444444444444444444444444443
No 156
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.35 E-value=1.2e-06 Score=48.26 Aligned_cols=34 Identities=41% Similarity=0.487 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999975
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=98.34 E-value=6.2e-06 Score=71.30 Aligned_cols=107 Identities=9% Similarity=-0.026 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
-++.++.+++..|..+...++++.|+..|++|+.++|+++.+|+.+|.+++..|+.++|+..+++++.++|.-..+-...
T Consensus 333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 34556889999999999999999999999999999999999999999999999999999999999999999876654433
Q ss_pred HHH-HHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 188 GRA-YRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 188 g~~-~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
-++ .+.-...+.|++.|-+-.+-..+.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (458)
T PRK11906 413 ECVDMYVPNPLKNNIKLYYKETESESHR 440 (458)
T ss_pred HHHHHHcCCchhhhHHHHhhccccccch
Confidence 334 556667888998887766555443
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.34 E-value=6e-06 Score=67.61 Aligned_cols=72 Identities=22% Similarity=0.187 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
..+++.+|..++..|+|++|+..|..++..+|++ +.+++.+|.++..+|++++|+..|++++..+|++..+.
T Consensus 180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 5788999999999999999999999999998874 88999999999999999999999999999999987543
No 159
>KOG1127|consensus
Probab=98.33 E-value=2e-06 Score=79.60 Aligned_cols=110 Identities=16% Similarity=0.219 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
+..+...+..+....+|+.|......+-+..|-. ...|..+|..|.+.+++.+|+.+|+.++..+|.+.+.|..+|.+
T Consensus 526 aeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeA 605 (1238)
T KOG1127|consen 526 AEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEA 605 (1238)
T ss_pred hhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 3334444455555555555555544433333322 23566788888889999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHh
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFDEQADEWLKE 222 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~ 222 (231)
|...|+|.-|++.|.+|..++|.+...+....
T Consensus 606 Y~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A 637 (1238)
T KOG1127|consen 606 YPESGRYSHALKVFTKASLLRPLSKYGRFKEA 637 (1238)
T ss_pred HHhcCceehHHHhhhhhHhcCcHhHHHHHHHH
Confidence 99999999999999999999998765554433
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.31 E-value=6.1e-05 Score=61.08 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC------------------hHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSK------------------PNACIRD 169 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~------------------~~~Ai~~ 169 (231)
....+.+.+|..+++.++|++|+..|++.++.+|++ ..+++.+|.++..+++ ...|+..
T Consensus 67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~ 146 (243)
T PRK10866 67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD 146 (243)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH
Confidence 334567899999999999999999999999998877 6789999998766641 2578899
Q ss_pred HHHHHhhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 170 CSVALKINPDSAAA-----------------YKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 170 ~~~al~~~p~~~~~-----------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
|++.+...|++.-+ -+..|..|...|.|..|+.-++.++.-.|+
T Consensus 147 ~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~ 207 (243)
T PRK10866 147 FSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD 207 (243)
T ss_pred HHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC
Confidence 99999999987431 124578899999999999999999999997
No 161
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.30 E-value=3.9e-06 Score=63.76 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------hHHH
Q psy13481 108 EDIDKSNEKKREAIHAYND----------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK-----------PNAC 166 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~----------~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------~~~A 166 (231)
.+|.+++.+..+|.++... .-+++|+..|++||.++|+...+++++|.+|..++. |++|
T Consensus 20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4566788888898888755 345789999999999999999999999999998875 8899
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 167 IRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 167 i~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
..+|++|.+.+|.|......|..+
T Consensus 100 ~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 100 TEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999999999998766665554
No 162
>KOG4234|consensus
Probab=98.30 E-value=6.8e-06 Score=63.51 Aligned_cols=78 Identities=24% Similarity=0.317 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
....+..+|.++++.+.++.||....++|.++|.+-.++.+||.+|-++.+|+.|+.+|.+.++++|..-.+.-....
T Consensus 133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 345666788899999999999999999999999999999999999999999999999999999999987665544333
No 163
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.29 E-value=6.4e-06 Score=59.25 Aligned_cols=67 Identities=19% Similarity=0.085 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+++++|.++-.+|+.++|+..|++++...... ..++..+|.++..+|++++|+..+++++...|++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 578999999999999999999999999986554 4689999999999999999999999999998983
No 164
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.29 E-value=2.2e-06 Score=47.01 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q psy13481 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179 (231)
Q Consensus 148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~ 179 (231)
.+|+.+|.+++.+|+|++|+.+|++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 165
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=3.4e-05 Score=66.58 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=92.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy13481 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAV 202 (231)
Q Consensus 123 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 202 (231)
+...++++.|+..|++..+.+|+ +...++.++...++..+|+..+++++..+|.+...+...+..+...++++.|+.
T Consensus 179 l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 34568999999999999999885 556689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCH-HHHHHHHhhchhhhc
Q psy13481 203 DLRNACKIDFDE-QADEWLKEVTPNKLN 229 (231)
Q Consensus 203 ~~~~al~l~p~~-~~~~~l~~~~~~~~k 229 (231)
..++++.+.|++ ..+..+.+++-.++.
T Consensus 256 iAk~av~lsP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence 999999999975 478888887766543
No 166
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.26 E-value=2.2e-05 Score=70.15 Aligned_cols=99 Identities=16% Similarity=0.076 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...++-+|..+-..|++++|+.+.++||...|+.+++|...|.++-+.|++.+|..+++.|-.+++.+--.....+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 45668889999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HcCCHHHHHHHHHHHHhcC
Q psy13481 193 LLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~ 211 (231)
..|+.++|.+.+..-.+-+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 9999999999888765554
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.25 E-value=9.5e-06 Score=67.28 Aligned_cols=104 Identities=20% Similarity=0.163 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---
Q psy13481 110 IDKSNEKKREAIHAYND-GKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--- 179 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~-~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--- 179 (231)
...+..+...|..+... |++++|+++|++|+.+.... ..++.+.|.++.++|+|.+|+..|+++....-.
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l 190 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL 190 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 33467778888888888 99999999999999983321 567789999999999999999999999875422
Q ss_pred ---CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 180 ---SA-AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 180 ---~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
+. ..++..+.|+..+|++..|...|.+....+|.
T Consensus 191 ~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 191 LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 12 34567888999999999999999999999985
No 168
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.25 E-value=3.3e-06 Score=49.50 Aligned_cols=42 Identities=17% Similarity=0.095 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQ 155 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~ 155 (231)
..+..+|..+...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999999999885
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=98.24 E-value=6.3e-06 Score=61.96 Aligned_cols=76 Identities=4% Similarity=-0.137 Sum_probs=69.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 139 AIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 139 al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+..+.++..+..+..|.-++..|++.+|...|+-....+|.+++.|..||.|+..+|+|++|+..|..|..+++++
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND 104 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 3445666788899999999999999999999999999999999999999999999999999999999999998765
No 170
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.21 E-value=4.7e-05 Score=63.34 Aligned_cols=98 Identities=20% Similarity=0.080 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q psy13481 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKW-EEAAVDLR 205 (231)
Q Consensus 127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~ 205 (231)
+.+.+|...|++.....+.++..++.+|.+++.+|+|++|...+..++..+|.++.++.++..+...+|+. +.+.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 36999999999998888889999999999999999999999999999999999999999999999999998 66778888
Q ss_pred HHHhcCCCHHHHHHHHhhc
Q psy13481 206 NACKIDFDEQADEWLKEVT 224 (231)
Q Consensus 206 ~al~l~p~~~~~~~l~~~~ 224 (231)
+....+|++....-+.+..
T Consensus 261 qL~~~~p~h~~~~~~~~~~ 279 (290)
T PF04733_consen 261 QLKQSNPNHPLVKDLAEKE 279 (290)
T ss_dssp HCHHHTTTSHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHH
Confidence 8888999876544444443
No 171
>KOG0495|consensus
Probab=98.21 E-value=1.9e-05 Score=70.57 Aligned_cols=103 Identities=17% Similarity=0.058 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...|+..+....-.++.++|+.+++++++..|+...+|..+|.++..+++.+.|...|...+...|...-.|..++..-.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 46677777777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
..|+.-.|...|.++..-+|++.
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcc
Confidence 99999999999999999999864
No 172
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.19 E-value=3.8e-06 Score=46.06 Aligned_cols=34 Identities=35% Similarity=0.553 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 173
>KOG1310|consensus
Probab=98.18 E-value=1.9e-05 Score=68.91 Aligned_cols=111 Identities=23% Similarity=0.252 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS---KPNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
+-+..+...+..|+..+-.+.+..|+..|.+++...|....++.++|.++++.+ +.-.|+.++..|+.+||...+++
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 456778888999999999999999999999999999999999999999998865 67789999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHH
Q psy13481 185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADE 218 (231)
Q Consensus 185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 218 (231)
+.++.++..++++.+|+.+...+....|.+.+..
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~ 482 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTDVARQ 482 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh
Confidence 9999999999999999999998888888655443
No 174
>KOG0495|consensus
Probab=98.16 E-value=2.4e-05 Score=69.97 Aligned_cols=112 Identities=14% Similarity=0.069 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194 (231)
Q Consensus 115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~ 194 (231)
.|...-...+.+..++.|..+|.++....| ...+|+.-+.....+++.++|+..++.+++..|+..+.|..+|.++..+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHH
Confidence 333333444445555555555555555444 3456666677777788899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481 195 GKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK 227 (231)
Q Consensus 195 g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~ 227 (231)
++.+.|...|...++..|+.. .+-.+.++.++.
T Consensus 699 ~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 999999999999999999854 666677666654
No 175
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.12 E-value=2.9e-05 Score=57.14 Aligned_cols=71 Identities=28% Similarity=0.488 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC---------------hHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSK---------------PNACIRDCSVAL 174 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~---------------~~~Ai~~~~~al 174 (231)
..+...+|.+++..++|++|+..+++.|+++|++ .-+++.+|.+++.... ...|...|++++
T Consensus 47 ~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv 126 (142)
T PF13512_consen 47 EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLV 126 (142)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999987 5689999999999887 889999999999
Q ss_pred hhCCCCHHH
Q psy13481 175 KINPDSAAA 183 (231)
Q Consensus 175 ~~~p~~~~~ 183 (231)
...|++.-+
T Consensus 127 ~~yP~S~ya 135 (142)
T PF13512_consen 127 RRYPNSEYA 135 (142)
T ss_pred HHCcCChhH
Confidence 999998754
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.11 E-value=1.5e-05 Score=71.43 Aligned_cols=69 Identities=25% Similarity=0.270 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~ 182 (231)
+..+..+|..+...|++++|...|++|+.++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 35666778888889999999999999999999 5899999999999999999999999999999999874
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.07 E-value=1.4e-05 Score=66.26 Aligned_cols=105 Identities=19% Similarity=0.217 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS------SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS- 180 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~- 180 (231)
.-.+.+..+...|+.+...++|++|.+.|.++....-. -+..|...|.++.+. ++.+|+.++++|+.+.-..
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 33444566666778888899999999999999876321 145666777777555 9999999999999885322
Q ss_pred -----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC
Q psy13481 181 -----AAAYKFRGRAYRLL-GKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 181 -----~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~ 213 (231)
+.++..+|.+|... |+++.|+..|++|+.+.-.
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45889999999999 9999999999999998543
No 178
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.04 E-value=0.00015 Score=64.92 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...+...+.++...|++++|++++......-.+...+.-.+|.++.++|++++|...|...|..||+|...|..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 35566678889999999999999999988888889999999999999999999999999999999999999999998884
Q ss_pred HcC-----CHHHHHHHHHHHHhcCCCHH
Q psy13481 193 LLG-----KWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 193 ~~g-----~~~~A~~~~~~al~l~p~~~ 215 (231)
... +.+.-...|.......|...
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~ 111 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSD 111 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCcccc
Confidence 443 45666777887777777643
No 179
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.03 E-value=0.00017 Score=60.96 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=98.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183 (231)
Q Consensus 104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~ 183 (231)
.++.+...+.......+..+...|++++|.....++++..-+.. .+...+ ..+.+++..=++..++.+...|+++..
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 44555555566667788888999999999999999998865433 332222 357788899999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhh
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKL 228 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~ 228 (231)
+.-+|..|+..+.|.+|..+|+.|++..|+.....++..+...+.
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG 375 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence 999999999999999999999999999999888888887776654
No 180
>KOG4555|consensus
Probab=98.03 E-value=6.9e-05 Score=54.15 Aligned_cols=63 Identities=29% Similarity=0.348 Sum_probs=59.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 152 KRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 152 ~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.-|.++..-|+.+.|++.|.++|.+.|.++.+|++++.+++..|+.++|+.++.+|+++..+.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 358888899999999999999999999999999999999999999999999999999997653
No 181
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.96 E-value=0.00027 Score=54.46 Aligned_cols=109 Identities=18% Similarity=0.135 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
.......|...+..+++++|+..++.++..-.+. .-+-.++|.+.+..|.+++|+..+.....-+ -.+..-..+|.
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGD 167 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhh
Confidence 4566788999999999999999999998654332 4456788999999999999988876543311 12234567999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHh
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDEQADEWLKE 222 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~ 222 (231)
++...|+-++|+..|.+++..+++....++++-
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lqm 200 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESDASPAAREILQM 200 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHccCChHHHHHHHh
Confidence 999999999999999999999977766666543
No 182
>KOG3785|consensus
Probab=97.95 E-value=3.5e-05 Score=64.45 Aligned_cols=86 Identities=13% Similarity=0.113 Sum_probs=73.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy13481 122 HAYNDGKFEDAVNAYSEAIKLNPSS-ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA 200 (231)
Q Consensus 122 ~~~~~~~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 200 (231)
.+..+.+|..|+.+++-....+... ...-.++|.|++++|+|++|+..|+-+.+.+..++..+.+++.|++.+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 4567789999999999887665433 356667899999999999999999999998888899999999999999999999
Q ss_pred HHHHHHH
Q psy13481 201 AVDLRNA 207 (231)
Q Consensus 201 ~~~~~~a 207 (231)
.....+|
T Consensus 111 ~~~~~ka 117 (557)
T KOG3785|consen 111 KSIAEKA 117 (557)
T ss_pred HHHHhhC
Confidence 8876655
No 183
>PRK10941 hypothetical protein; Provisional
Probab=97.93 E-value=0.00014 Score=59.75 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchh
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~ 226 (231)
.....++=.+|.+.+++..|+.+.+..+.++|+++.-+.-+|.+|..+|.+..|..+++..++..|++.....++.-...
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34566777788888888888888888888888888888888888888888888888888888888887766666655544
Q ss_pred hh
Q psy13481 227 KL 228 (231)
Q Consensus 227 ~~ 228 (231)
+.
T Consensus 261 l~ 262 (269)
T PRK10941 261 IE 262 (269)
T ss_pred Hh
Confidence 43
No 184
>KOG2376|consensus
Probab=97.89 E-value=0.00018 Score=63.59 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=77.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------------------
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN------------------- 177 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------------------- 177 (231)
+..|.++++.+..++|+..++ ..++.+..+...+|.+++++|+|++|+..|+..+.-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 689999999999999999999 4566667788889999999999999999998764433
Q ss_pred -----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 178 -----------PD-SAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 178 -----------p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
|. +...+||.+.++...|+|.+|++.+++|+++
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22 3457899999999999999999999999544
No 185
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.86 E-value=3.1e-05 Score=42.38 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481 149 LYAKRGQSYLQLSKPNACIRDCSVALKINP 178 (231)
Q Consensus 149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p 178 (231)
+|+.+|.+|..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444445555555555555555555554444
No 186
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.85 E-value=0.0017 Score=46.09 Aligned_cols=98 Identities=23% Similarity=0.318 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS------------SALLYAKRGQSYLQLSKPNACIRDCSVALKI---- 176 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~---- 176 (231)
+......|...+..|-|++|...+++++....+ ++-++..++.++..+|+|++++....++|..
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 344445566778889999999999999987433 2567888999999999999988887777754
Q ss_pred ---CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 177 ---NPDSAA----AYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 177 ---~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
+.+..+ +-++++.++..+|+.++|++.|+.+-++
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444444 4578999999999999999999998664
No 187
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.001 Score=54.59 Aligned_cols=112 Identities=20% Similarity=0.151 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH----------------------
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCS---------------------- 171 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~---------------------- 171 (231)
...+..+......|++.+|...|..++...|++..+...++.||...|+.+.|...+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 4456678889999999999999999999999999999999999999999865544432
Q ss_pred ------------HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---HHHHHHHHhhch
Q psy13481 172 ------------VALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD---EQADEWLKEVTP 225 (231)
Q Consensus 172 ------------~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~l~~~~~ 225 (231)
+.+..+|++..+-+.++..+...|+.+.|...+-..++.+-+ +...+.+.++..
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 445557999999999999999999999999999999988754 345555544443
No 188
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.00016 Score=58.57 Aligned_cols=77 Identities=22% Similarity=0.208 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
.-.+.++|.+|..++.+|+|+.|...|..+++-+|++ +++++.+|.+...+|+.++|-..|+++++..|....+..-
T Consensus 175 ~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 175 TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4456888999999999999999999999999998876 7899999999999999999999999999999998876543
No 189
>KOG2053|consensus
Probab=97.82 E-value=0.00025 Score=65.43 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=87.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy13481 122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA 201 (231)
Q Consensus 122 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 201 (231)
.....++|.+|+....+.++.+|+...+...-|.+++++|++++|..+++..-...+++-..+--+-.||..+|++++|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 45677899999999999999999999999999999999999999998888888888888899999999999999999999
Q ss_pred HHHHHHHhcCCCHH
Q psy13481 202 VDLRNACKIDFDEQ 215 (231)
Q Consensus 202 ~~~~~al~l~p~~~ 215 (231)
..|++++..+|...
T Consensus 98 ~~Ye~~~~~~P~ee 111 (932)
T KOG2053|consen 98 HLYERANQKYPSEE 111 (932)
T ss_pred HHHHHHHhhCCcHH
Confidence 99999999999843
No 190
>KOG4648|consensus
Probab=97.80 E-value=2.3e-05 Score=65.30 Aligned_cols=64 Identities=23% Similarity=0.263 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 150 ~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
.-.+|.-|++.|+|++||.+|.+++..+|.|+..+.+++.+|+.+..+..|..++..|+.++..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 4568999999999999999999999999999999999999999999999999999999999843
No 191
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.78 E-value=4.5e-05 Score=41.73 Aligned_cols=33 Identities=33% Similarity=0.495 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+|+.+|.+|..+|++++|...|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 579999999999999999999999999999853
No 192
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.76 E-value=9.5e-05 Score=58.01 Aligned_cols=69 Identities=25% Similarity=0.308 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+..++.||..|-.+|=+.-|..+|.+++.++|.-+.+++.+|.-+...|+|+.|.+.|...+++||...
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 567888899999999999999999999999999999999999999999999999999999999999865
No 193
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.76 E-value=0.00039 Score=48.78 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=79.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhhCCCCHHHH
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSA---LLYAKRGQSYLQLSK-----------PNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
+|..++.+||+-+|++..+..+..++++. ..+..-|.+++++.. .-.|+.+|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56788999999999999999999998876 456666888877664 4578999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 185 KFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 185 ~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
+.+|.=+.....|++++.-.++++.+.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999988877888899998888888763
No 194
>KOG2796|consensus
Probab=97.75 E-value=0.00023 Score=57.40 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL----N--PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~----~--p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~ 183 (231)
+.+......+|...++-||.+.|..+|+..=+. + ........+.+.+|.-.++|..|...+.+++..+|.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 334556677899999999999999999954332 2 2335667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.++.+.|+..+|+...|++.++.++.+.|...
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999854
No 195
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.0006 Score=56.51 Aligned_cols=100 Identities=13% Similarity=-0.024 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL-SKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194 (231)
Q Consensus 116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~ 194 (231)
|........+.+..+.|..+|.+|.+..+-...+|...|.+-+.. ++..-|...|+.++...|.+...|......+...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 334444445555567777777777654444566666667765553 4444477777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCHH
Q psy13481 195 GKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 195 g~~~~A~~~~~~al~l~p~~~ 215 (231)
|+.+.|...|++++..-|.+.
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEK 104 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHH
T ss_pred CcHHHHHHHHHHHHHhcCchh
Confidence 777777777777776655544
No 196
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.74 E-value=0.00076 Score=51.53 Aligned_cols=92 Identities=33% Similarity=0.423 Sum_probs=65.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCH
Q psy13481 122 HAYNDGKFEDAVNAYSEAIKLNP---SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD-SAAAYKFRGRAYRLLGKW 197 (231)
Q Consensus 122 ~~~~~~~~~~Ai~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~ 197 (231)
.+...|++..|+..|.+++...| .....+..++..+...+++..|+..+.+++...+. ....+..++.++...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56677777777777777766665 34555666666666777777777777777777777 577777777777777777
Q ss_pred HHHHHHHHHHHhcCCC
Q psy13481 198 EEAAVDLRNACKIDFD 213 (231)
Q Consensus 198 ~~A~~~~~~al~l~p~ 213 (231)
..|...+..++...|.
T Consensus 219 ~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 219 EEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHHHHHHhhCcc
Confidence 7777777777777765
No 197
>KOG1130|consensus
Probab=97.73 E-value=0.00013 Score=62.25 Aligned_cols=97 Identities=20% Similarity=0.141 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLN------PSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN------PDSA 181 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------p~~~ 181 (231)
.++.++|+.+.-.|+|+.|+++|+..+.+. ...+...|.+|..|.-+++|..||.++.+-+.+. ..-.
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 445567888888999999999999877652 1236778899999999999999999988766554 2345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
.+++.+|.+|-.+|..+.|+.+..+.+++
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 68899999999999999999888877765
No 198
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.71 E-value=0.0016 Score=49.65 Aligned_cols=101 Identities=29% Similarity=0.350 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
.......+..+...+++..|+..+.+++...+. ....+..++.++...+++..|+..+..++...|.....+..++..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (291)
T COG0457 167 AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLL 246 (291)
T ss_pred HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHH
Confidence 344445555577889999999999999999999 7999999999999999999999999999999999888889999998
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~ 213 (231)
...|.++.+...+.+++...|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 247 LELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHcCCHHHHHHHHHHHHHhCcc
Confidence 8888899999999999999986
No 199
>KOG1915|consensus
Probab=97.66 E-value=0.0016 Score=56.63 Aligned_cols=112 Identities=14% Similarity=0.020 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
.-....|...|.--.+++++..|...|++|+..+-.+..+|...+.+-++.+....|...+.+|+.+-|.--..|+..-.
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33456677777777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~ 221 (231)
+-..+|+...|...|++=+...|+..++...-
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI 181 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFI 181 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 99999999999999999999999986554443
No 200
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.64 E-value=0.00026 Score=43.11 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
++.++..++.+|+|..|..+...+++++|++.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 34445555555555555555555555555433
No 201
>KOG1130|consensus
Probab=97.64 E-value=3.4e-05 Score=65.68 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CC--CHHH
Q psy13481 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN----PD--SAAA 183 (231)
Q Consensus 116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~----p~--~~~~ 183 (231)
+-.+|+.|+-.|+|+.||.+-+.-+.+.... -.++.++|.||.-+|+++.|+++|.+++.+. .. -+..
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 3346667778899999999988888774433 4688999999999999999999999866543 33 3456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
.|.+|..|..+.+++.|+.++++-+.+.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999887764
No 202
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.63 E-value=0.0087 Score=44.99 Aligned_cols=112 Identities=13% Similarity=-0.030 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...+..........++.+++...+...--+.|+.+.+-..-|.+++..|+|.+|+..++.+....|..+.+--.++.|++
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 56777888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhch
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~ 225 (231)
.+|+.. -..+-..++.-.++..+....+.+..
T Consensus 90 ~~~D~~-Wr~~A~evle~~~d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 90 ALGDPS-WRRYADEVLESGADPDARALVRALLA 121 (160)
T ss_pred HcCChH-HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 999842 33334556667767666666655543
No 203
>KOG2376|consensus
Probab=97.60 E-value=0.00068 Score=60.12 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS---SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
+++..+++..-.++.+.+.|++|+.. |+.++- +....+..|.|++++++.++|+.+++ .+++.+......
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L 115 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLEL 115 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHH
Confidence 34456666677777888888888733 444442 22333688999999999999999987 666777889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.|.+++.+|+|++|++.|+...+-+-++
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 9999999999999999999998887664
No 204
>PRK10941 hypothetical protein; Provisional
Probab=97.60 E-value=0.0015 Score=53.63 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
..+.++=..+.+.++|+.|+.+.+..+.+.|+++.-+.-||.+|.++|.+..|+.+++..++..|+++.+-.....+.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 444555667899999999999999999999999999999999999999999999999999999999998766554443
No 205
>KOG4340|consensus
Probab=97.59 E-value=0.00021 Score=58.71 Aligned_cols=95 Identities=16% Similarity=0.286 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CC-------
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN----PD------- 179 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~----p~------- 179 (231)
+++......|...++.|+|+.|+..|+.+++..-..+..-+++|.++++.++|..|+......++.. |.
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 3467788899999999999999999999999999999999999999999999999999988887764 22
Q ss_pred ---------C---------HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481 180 ---------S---------AAAYKFRGRAYRLLGKWEEAAVDLR 205 (231)
Q Consensus 180 ---------~---------~~~~~~lg~~~~~~g~~~~A~~~~~ 205 (231)
| ..+++..+.+++..|+++.|.+.+.
T Consensus 222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 1 1256667788999999999888764
No 206
>KOG4642|consensus
Probab=97.57 E-value=0.00014 Score=57.76 Aligned_cols=63 Identities=27% Similarity=0.331 Sum_probs=59.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 152 KRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 152 ~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.-|..++.-++|..||.+|.++|-++|..+..|.+++.||..+.+|+.+..+.++|+.++|+.
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~ 77 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL 77 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH
Confidence 347778888899999999999999999999999999999999999999999999999999974
No 207
>KOG3081|consensus
Probab=97.56 E-value=0.0025 Score=51.54 Aligned_cols=95 Identities=19% Similarity=0.111 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHH
Q psy13481 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA-VDLR 205 (231)
Q Consensus 127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~ 205 (231)
+.+..|.-+|++.-...|-.+...+..|.|++.+|||++|...++.++..++.++.++.|+-.+-..+|.-.++. +.+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 456777777777777666667777777777777777777777777777777777777777777777777654444 4455
Q ss_pred HHHhcCCCHHHHHHHH
Q psy13481 206 NACKIDFDEQADEWLK 221 (231)
Q Consensus 206 ~al~l~p~~~~~~~l~ 221 (231)
+....+|.+..-..+.
T Consensus 267 QLk~~~p~h~~vk~~~ 282 (299)
T KOG3081|consen 267 QLKLSHPEHPFVKHLN 282 (299)
T ss_pred HHHhcCCcchHHHHHH
Confidence 5555566654333333
No 208
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.52 E-value=0.0039 Score=60.56 Aligned_cols=95 Identities=11% Similarity=0.104 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHH
Q psy13481 115 EKKREAIHAYNDGKFEDAVNAYSEAIK----LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-PDSAAAYKFRGR 189 (231)
Q Consensus 115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-p~~~~~~~~lg~ 189 (231)
.+..+...+.+.|++++|...|.+... +.| +...|..+-.+|.+.|++++|+..|+...+.+ +.+...|..+..
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 344445555556666666666665544 233 24455555556666666666666666666555 334556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q psy13481 190 AYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l 210 (231)
.|...|++++|...|......
T Consensus 623 ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHc
Confidence 666666666666666665544
No 209
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.46 E-value=0.014 Score=47.14 Aligned_cols=114 Identities=20% Similarity=0.193 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhhCCCCH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSK--------PNACIRDCSVALKINPDSA 181 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~--------~~~Ai~~~~~al~~~p~~~ 181 (231)
-.+...++..+++.++|+.|+...++.++++|++ .-+++.+|.+++..=+ -..|+..|+..+...|++.
T Consensus 71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 4567789999999999999999999999998877 4567788888776543 4678999999999999853
Q ss_pred H---------------HH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCH----HHHHHHHhhchh
Q psy13481 182 A---------------AY--KFRGRAYRLLGKWEEAAVDLRNACKIDFDE----QADEWLKEVTPN 226 (231)
Q Consensus 182 ~---------------~~--~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~l~~~~~~ 226 (231)
- +. ...|..|...|.|..|+.-++..++-.|+. ++..++.+....
T Consensus 151 Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~ 216 (254)
T COG4105 151 YAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA 216 (254)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 2 11 235788999999999999999999998873 345555554443
No 210
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.46 E-value=0.0008 Score=40.92 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
+.++.+|..++++|+|..|...++.++++.|+|..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4677888999999999999999999999999988876655444
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.46 E-value=0.0016 Score=48.18 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
...+..++..+...|++++|+..+++++..+|.+-.+|..+-.+|...|++..|+..|+++..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456667778889999999999999999999999999999999999999999999999998754
No 212
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.45 E-value=0.0011 Score=61.88 Aligned_cols=94 Identities=13% Similarity=0.064 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194 (231)
Q Consensus 115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~ 194 (231)
.+......+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.+.+.|.+...|..++.+|...
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 3445566777888888888887764 2344 4567888888888999999999999999999999888899999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q psy13481 195 GKWEEAAVDLRNACKI 210 (231)
Q Consensus 195 g~~~~A~~~~~~al~l 210 (231)
|+|++|.+.++...+.
T Consensus 542 G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 542 GRQAEAAKVVETLKRK 557 (697)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999998877654
No 213
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.45 E-value=0.00028 Score=38.00 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481 151 AKRGQSYLQLSKPNACIRDCSVALKINP 178 (231)
Q Consensus 151 ~~la~~~~~~~~~~~Ai~~~~~al~~~p 178 (231)
+++|.++.+.|++++|+..|++++...|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3334444444444444444444443333
No 214
>KOG2471|consensus
Probab=97.42 E-value=0.00026 Score=61.54 Aligned_cols=113 Identities=19% Similarity=0.075 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-h----
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEA-IKLNPS--------SALLYAKRGQSYLQLSKPNACIRDCSVALK-I---- 176 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~a-l~~~p~--------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~-~---- 176 (231)
+.+..++..+...+..|+|.+|...+... |...|. ...+|+|+|.++++++.|.-++..|.+|+. .
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 34567778888999999999999887653 222333 345789999999999999999999999996 1
Q ss_pred ----CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481 177 ----NP---------DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV 223 (231)
Q Consensus 177 ----~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~ 223 (231)
.| .....+|+.|..|...|+.-.|..+|.+++.....+. .|-.+.++
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 11 2345889999999999999999999999999876554 45444444
No 215
>KOG3824|consensus
Probab=97.42 E-value=0.0009 Score=55.24 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
+.....+......|....+.|+.++|..+|.-|+++.|+++.++...|...-..++.-+|-.+|-+|+.+.|.|.+++.+
T Consensus 110 pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 110 PAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred chhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 34445566666778888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q psy13481 187 RGRAY 191 (231)
Q Consensus 187 lg~~~ 191 (231)
++...
T Consensus 190 R~RT~ 194 (472)
T KOG3824|consen 190 RARTT 194 (472)
T ss_pred hhccc
Confidence 87653
No 216
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.41 E-value=0.0017 Score=57.80 Aligned_cols=88 Identities=22% Similarity=0.154 Sum_probs=76.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q psy13481 126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD----SAAAYKFRGRAYRLLGKWEEAA 201 (231)
Q Consensus 126 ~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~ 201 (231)
..+...|...+....+..|+++-..+..|.++...|+.+.|+..|++++..... +.-.++.+|+++..+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 567788999999999999999999999999999999999999999998854332 2347789999999999999999
Q ss_pred HHHHHHHhcCCC
Q psy13481 202 VDLRNACKIDFD 213 (231)
Q Consensus 202 ~~~~~al~l~p~ 213 (231)
.+|.+.++.+.-
T Consensus 326 ~~f~~L~~~s~W 337 (468)
T PF10300_consen 326 EYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHhcccc
Confidence 999999987643
No 217
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.40 E-value=0.0023 Score=54.26 Aligned_cols=86 Identities=28% Similarity=0.270 Sum_probs=78.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy13481 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVD 203 (231)
Q Consensus 124 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 203 (231)
..-+++..=+...++.++.+|+++.++.-+|..+++.+.|.+|-..|+.++...| +...|..+|.++..+|+...|...
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHH
Confidence 4558888899999999999999999999999999999999999999999999886 455778899999999999999999
Q ss_pred HHHHHhc
Q psy13481 204 LRNACKI 210 (231)
Q Consensus 204 ~~~al~l 210 (231)
++.++.+
T Consensus 384 r~e~L~~ 390 (400)
T COG3071 384 RREALLL 390 (400)
T ss_pred HHHHHHH
Confidence 9999854
No 218
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.39 E-value=0.0048 Score=51.11 Aligned_cols=102 Identities=14% Similarity=0.060 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q psy13481 114 NEKKREAIHAYN-DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA---AAYKFRGR 189 (231)
Q Consensus 114 ~~~~~~a~~~~~-~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~lg~ 189 (231)
..|...|..-+. .++...|...|+.+++..|.+..+|......+..+++...|...|++++..-+... ..|.....
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~ 115 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIE 115 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 445566666445 67777799999999999999999999999999999999999999999999887655 57888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.-...|+.+...+...++..+.|++.
T Consensus 116 fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 116 FESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 88899999999999999999998743
No 219
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.35 E-value=0.0097 Score=57.93 Aligned_cols=94 Identities=9% Similarity=0.018 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHH
Q psy13481 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPS-SALLYAKRGQSYLQLSKPNACIRDCSVALKINP-DSAAAYKFRGRAYRL 193 (231)
Q Consensus 116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p-~~~~~~~~lg~~~~~ 193 (231)
+..+...+.+.|++++|...|.+....... +...|..+...|.+.|++++|+..|.......- -+...|..+..+|..
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 333444455556666666666555544221 455566666666666666666666665544331 234455556666666
Q ss_pred cCCHHHHHHHHHHHHh
Q psy13481 194 LGKWEEAAVDLRNACK 209 (231)
Q Consensus 194 ~g~~~~A~~~~~~al~ 209 (231)
.|++++|...|.....
T Consensus 555 ~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKA 570 (1060)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666665543
No 220
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.35 E-value=0.00031 Score=37.82 Aligned_cols=33 Identities=27% Similarity=0.236 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+++.+|.++..+|++++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 378999999999999999999999999999973
No 221
>PLN03077 Protein ECB2; Provisional
Probab=97.30 E-value=0.0038 Score=59.69 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~ 193 (231)
..+......+.+.|++++|.+.+++. ...|+ ...|..+-.++...++.+.+....++++++.|++...|..++.+|..
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 34555666677778888888877764 34553 56666666666777778888888888888889888888888999999
Q ss_pred cCCHHHHHHHHHHHHh
Q psy13481 194 LGKWEEAAVDLRNACK 209 (231)
Q Consensus 194 ~g~~~~A~~~~~~al~ 209 (231)
.|+|++|.+..+....
T Consensus 704 ~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 704 AGKWDEVARVRKTMRE 719 (857)
T ss_pred CCChHHHHHHHHHHHH
Confidence 9999988888776654
No 222
>KOG1586|consensus
Probab=97.29 E-value=0.0042 Score=49.42 Aligned_cols=103 Identities=15% Similarity=0.100 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC-----
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA------LLYAKRGQSYLQL-SKPNACIRDCSVALKINPDS----- 180 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~------~~~~~la~~~~~~-~~~~~Ai~~~~~al~~~p~~----- 180 (231)
+..-+..+...++..+..+|+.+++++|++.-+-. ..+..+|.+|-.- .++.+||.+|+++-+.....
T Consensus 73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 33444455555666788888888888887755443 2334667777554 67888888888877665321
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 181 -AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 181 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.+.+...+..-..+++|.+|+..|++.....-++.
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 23445555566677788888888877766555544
No 223
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.28 E-value=0.00055 Score=38.06 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
+|.++|.+|..+|+|++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886544
No 224
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.28 E-value=0.013 Score=45.24 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS--SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
...+..+++..+..+++..|...++...+.+|. +++....+|.++...|++.+|...|+.++...|. +.+....+..
T Consensus 124 ~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~ 202 (251)
T COG4700 124 AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEM 202 (251)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 567788999999999999999999999999885 3667777899999999999999999999999975 5566778999
Q ss_pred HHHcCCHHHHHHHH----HHHHhcCCC--HHHHHHHHhhchhhhc
Q psy13481 191 YRLLGKWEEAAVDL----RNACKIDFD--EQADEWLKEVTPNKLN 229 (231)
Q Consensus 191 ~~~~g~~~~A~~~~----~~al~l~p~--~~~~~~l~~~~~~~~k 229 (231)
+..+|+..+|..-+ ..+.+-.|+ +....|++.....+++
T Consensus 203 La~qgr~~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A~~~~~q 247 (251)
T COG4700 203 LAKQGRLREANAQYVAVVDTAKRSRPHYRKHHREWIKTANERLKQ 247 (251)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 99999887776544 444444554 4467888877665544
No 225
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.28 E-value=0.00064 Score=37.79 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 149 LYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
+|.++|.+|.++|+|++|+..|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778899999999999999999996644
No 226
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.27 E-value=0.0047 Score=42.06 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481 132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS--AAAYKFRGRAYRLLGKWEEAAVDLR 205 (231)
Q Consensus 132 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~ 205 (231)
.+..+++.++.+|++..+.+.+|..+...|++++|+..+-.++..++.+ ..+...+-.++..+|.-+.-...|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3566778888888888888888888888888888888888888887755 4455555556666665443333333
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.27 E-value=0.0025 Score=56.69 Aligned_cols=102 Identities=17% Similarity=0.069 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS----SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA-AAY 184 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~-~~~ 184 (231)
|+.+-.++..|..+...|+.++|++.|++++..... ..-+++.+|-++.-+.+|.+|..++.+.++.+.-+. -..
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~ 343 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA 343 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence 555777888999999999999999999999853222 245788999999999999999999999999775432 344
Q ss_pred HHHHHHHHHcCCH-------HHHHHHHHHHHhcC
Q psy13481 185 KFRGRAYRLLGKW-------EEAAVDLRNACKID 211 (231)
Q Consensus 185 ~~lg~~~~~~g~~-------~~A~~~~~~al~l~ 211 (231)
|..|.|+..+|+. ++|...|.++-.+-
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 7789999999999 88888887775543
No 228
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.26 E-value=0.00049 Score=35.90 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481 149 LYAKRGQSYLQLSKPNACIRDCSVALKINP 178 (231)
Q Consensus 149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p 178 (231)
+|+++|.++..++++..|+.++++++.++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555554444
No 229
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.26 E-value=0.0029 Score=59.02 Aligned_cols=98 Identities=9% Similarity=-0.001 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH-----------------------------------H
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL--NPSSALLYAKRG-----------------------------------Q 155 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~la-----------------------------------~ 155 (231)
...|..+...+.+.|++++|+..|++.... .| +...|..+. .
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 455666666666667777777766666543 23 233344444 4
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCH
Q psy13481 156 SYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK--IDFDE 214 (231)
Q Consensus 156 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~ 214 (231)
.|.+.|++++|...|++..+ .+...|..+...|...|+.++|+..|++... +.|+.
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 44444444444444444322 2444566666666666666666666666554 34553
No 230
>KOG0551|consensus
Probab=97.25 E-value=0.0027 Score=52.91 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~ 181 (231)
.+..+.++|.+.+-.|+|..|+....+++.++|.+..++++-|.|++.++++..|+.+|+..+.++-..-
T Consensus 118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3567788898999999999999999999999999999999999999999999999999999988875443
No 231
>KOG0376|consensus
Probab=97.21 E-value=0.00012 Score=63.32 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=78.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481 105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
..+.+++.+..+-.++.++.+.++|..|+.-+.+||+.+|....+|+.+|.++..+++|.+|+.+|+....+.|+.+.+.
T Consensus 30 aI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 30 AIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHH
Confidence 34445555666667888899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHc
Q psy13481 185 KFRGRAYRLL 194 (231)
Q Consensus 185 ~~lg~~~~~~ 194 (231)
..+..|-...
T Consensus 110 r~~~Ec~~~v 119 (476)
T KOG0376|consen 110 RKIDECNKIV 119 (476)
T ss_pred HHHHHHHHHH
Confidence 8777765443
No 232
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.19 E-value=0.0058 Score=58.56 Aligned_cols=99 Identities=8% Similarity=0.034 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD------- 179 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~------- 179 (231)
...+...|..+...|++++|...+.+++...... ..++.++|.+++..|++.+|...+++++.+...
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 3455677888888999999999999998763321 345677899999999999999999988876321
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 180 -SAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 180 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
....+..+|.++...|++++|...+.+++.+.
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 12345677888888999999999988887753
No 233
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.19 E-value=0.0075 Score=57.84 Aligned_cols=97 Identities=13% Similarity=0.006 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS------AA 182 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------~~ 182 (231)
......|..++..|++++|...+++++...+.. ..++..+|.++...|++.+|...+++++...... ..
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 344457888899999999999999999865543 2456788999999999999999999999765421 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
++.++|.++...|+++.|...+++++.+
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6678899999999999999999999886
No 234
>KOG4507|consensus
Probab=97.16 E-value=0.00086 Score=59.63 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=87.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy13481 125 NDGKFEDAVNAYSEAIKLNPSS-ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVD 203 (231)
Q Consensus 125 ~~~~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 203 (231)
..|+...|+.++..|+...|.. .....++|.++++-|-.-.|...+.+++.++..-+-.++.+|.++..+.+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 4599999999999999998854 456889999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHhcCCCHH-HHHHHHhh
Q psy13481 204 LRNACKIDFDEQ-ADEWLKEV 223 (231)
Q Consensus 204 ~~~al~l~p~~~-~~~~l~~~ 223 (231)
|+.|++++|++. ...-++.+
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHH
Confidence 999999999864 44444443
No 235
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.15 E-value=0.0067 Score=52.13 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNP--------SS----------ALLYAKRGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p--------~~----------~~~~~~la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
.+...-|...+++++|..|..-|.-++++.. .. .-....+..||+++++.+.|+.+..+.|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 3444455666777777777777777776521 11 22345789999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 176 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
+||.++.-+...+.|++.+.+|.+|...+--+.-
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887665543
No 236
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.14 E-value=0.056 Score=40.12 Aligned_cols=110 Identities=14% Similarity=-0.003 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...+...........++.++...+...--+.|+.+.+...-|.++...|+|.+|+..++...+-.+..+.+.-.++.|++
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 45566666677779999999999999888999999999999999999999999999999999999888988899999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~ 223 (231)
.+|+.. -..+-..++.-+++.++....+.+
T Consensus 90 al~Dp~-Wr~~A~~~le~~~~~~a~~Lv~al 119 (153)
T TIGR02561 90 AKGDAE-WHVHADEVLARDADADAVALVRAL 119 (153)
T ss_pred hcCChH-HHHHHHHHHHhCCCHhHHHHHHHH
Confidence 999842 233334455566665555555443
No 237
>KOG1585|consensus
Probab=97.13 E-value=0.012 Score=47.16 Aligned_cols=100 Identities=21% Similarity=0.091 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCCH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN-----PDSA 181 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-----p~~~ 181 (231)
+..+...+..+...++|++|...+.+|++-..++ +.++-..|.....+..+.++...+++|..+. |+.+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4455555666777899999999999999765555 3455567888888999999999999999886 3333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
..-...+-=.....+.+.|+..|++++.+.-
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 3333344445566789999999999998754
No 238
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.11 E-value=0.00086 Score=53.07 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=51.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481 121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181 (231)
Q Consensus 121 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~ 181 (231)
......++.+.|.+.|++++.+-|.....|+++|....+.|++..|...|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456778888888888888888888888888888888888888888888888888888654
No 239
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.11 E-value=0.0008 Score=35.04 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
.+++.+|.++..+|+++.|...|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 47889999999999999999999999999885
No 240
>KOG0545|consensus
Probab=97.08 E-value=0.0031 Score=50.53 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~ 183 (231)
+.-....+.+...+++..|+|-+++++....+..+|.+..+|+.||.++...=+..+|..+|.++++++|.-..+
T Consensus 226 dk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 226 DKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 344456677788889999999999999999999999999999999999999999999999999999999976543
No 241
>KOG2610|consensus
Probab=97.08 E-value=0.0052 Score=51.44 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL-NPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
|.+..+++.--..++-+|+...-...+++.+-. +++. .-+...++-++...|-|.+|.....+++++|+.+..+.+
T Consensus 134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H 213 (491)
T KOG2610|consen 134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH 213 (491)
T ss_pred chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence 333334443344444445555555555544444 3333 222223344445555555555555555555555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q psy13481 186 FRGRAYRLLGKWEEAAVDLR 205 (231)
Q Consensus 186 ~lg~~~~~~g~~~~A~~~~~ 205 (231)
-.+.++...|++.++.++..
T Consensus 214 a~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 214 AKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHHhcchhhhHHHHHH
Confidence 55555555555555554443
No 242
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.07 E-value=0.00099 Score=52.75 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=57.1
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 155 QSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 155 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
....+.++.+.|.+.|++++.+.|.+...|+.+|......|+++.|.+.|++.++++|++.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4556788999999999999999999999999999999999999999999999999999764
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.07 E-value=0.015 Score=51.10 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS--SALLYAKRGQSYLQLSKPNACIRDCSVALKIN-PDSAAAYKFRGRA 190 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-p~~~~~~~~lg~~ 190 (231)
.....+|+.+.+.|+.++|++.|+..++.+|. +..++.++..+++.+++|.++...+.+.=++. |.++...|..+..
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 33456777777888888888888888887765 45678888888888888888877776653332 4455544444443
Q ss_pred HHH-cCC---------------HHHHHHHHHHHHhcCCCH
Q psy13481 191 YRL-LGK---------------WEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 191 ~~~-~g~---------------~~~A~~~~~~al~l~p~~ 214 (231)
... .|+ -..|++++.+|++.+|+-
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 222 121 234667888888888874
No 244
>KOG4340|consensus
Probab=97.02 E-value=0.0051 Score=50.74 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=76.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy13481 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAV 202 (231)
Q Consensus 123 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 202 (231)
+.+..+|..||+++.--.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|......+..+..++..+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999988888888899999999888887
Q ss_pred HHHHH
Q psy13481 203 DLRNA 207 (231)
Q Consensus 203 ~~~~a 207 (231)
.....
T Consensus 100 V~~~~ 104 (459)
T KOG4340|consen 100 VAFLL 104 (459)
T ss_pred HHHHh
Confidence 65544
No 245
>KOG2610|consensus
Probab=97.00 E-value=0.011 Score=49.67 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=86.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHH
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI-NPDS---AAAYKFRGRAYR 192 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~-~p~~---~~~~~~lg~~~~ 192 (231)
...+..++.+|++.+|...+++.+.-.|.+.-++..--.+++.+|+.......+++.+-. |++- ..+.-.++.++.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 344556778899999999999999999999999999999999999999999999999988 6655 445566788999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
..|-|++|.+.-.+++++++.+.
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~ 209 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDC 209 (491)
T ss_pred HhccchhHHHHHHhhccCCCcch
Confidence 99999999999999999999753
No 246
>KOG2471|consensus
Probab=96.98 E-value=0.0013 Score=57.47 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL------------------NPSSALLYAKRGQSYLQLSKPNACIRDCSVAL 174 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al 174 (231)
...|.++|.+++..|.|.-++.+|.+|++- ...+....||.|..|+..|++-.|.++|.++.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 455678899999999999999999999961 12347889999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcC
Q psy13481 175 KINPDSAAAYKFRGRAYRLLG 195 (231)
Q Consensus 175 ~~~p~~~~~~~~lg~~~~~~g 195 (231)
...-.++..|..++.|+....
T Consensus 363 ~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999987643
No 247
>KOG2396|consensus
Probab=96.97 E-value=0.01 Score=52.03 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q psy13481 132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK-WEEAAVDLRNACKI 210 (231)
Q Consensus 132 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l 210 (231)
-+..|+.|+...+.+...|.+......+.+.|.+--..|.+++..+|+++..|..-+.-.+..+. .+.|...|.++++.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 34567777777777777777777666666667777777777777777777777777766666664 77777777777777
Q ss_pred CCCHH
Q psy13481 211 DFDEQ 215 (231)
Q Consensus 211 ~p~~~ 215 (231)
+|+.+
T Consensus 170 npdsp 174 (568)
T KOG2396|consen 170 NPDSP 174 (568)
T ss_pred CCCCh
Confidence 77754
No 248
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.97 E-value=0.0073 Score=41.08 Aligned_cols=63 Identities=27% Similarity=0.219 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---HHHHHHHHhhchhh
Q psy13481 165 ACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD---EQADEWLKEVTPNK 227 (231)
Q Consensus 165 ~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~l~~~~~~~ 227 (231)
..+..+++.+..+|++..+.+.+|..+...|++++|+..+..+++.+++ +.+...+..+...+
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 3577889999999999999999999999999999999999999999876 34666666665543
No 249
>KOG3081|consensus
Probab=96.93 E-value=0.018 Score=46.71 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=73.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL----SKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~ 194 (231)
.-.++.+..+++-|...+++...++. -..+..+|.+|.++ +++..|.-.|+..-+..|..+..+...+.|+..+
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh
Confidence 33455566666666666666666543 34555566666553 4688999999999998889999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCH
Q psy13481 195 GKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 195 g~~~~A~~~~~~al~l~p~~ 214 (231)
|+|++|...++.++.-++++
T Consensus 221 ~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred cCHHHHHHHHHHHHhccCCC
Confidence 99999999999999998875
No 250
>KOG1941|consensus
Probab=96.88 E-value=0.0034 Score=53.03 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--------
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD-------- 179 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~-------- 179 (231)
......|+.+...+-|+++++.|+.|++..-++ ..++..+|..+-.+++|++|+.+..+|.++-..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 344458888889999999999999999884433 357889999999999999999999999887532
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 180 --SAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 180 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
...+++.++.+++.+|....|.++...+.++.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 12367889999999999999999998887763
No 251
>KOG2053|consensus
Probab=96.85 E-value=0.012 Score=54.66 Aligned_cols=108 Identities=14% Similarity=0.050 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
...|+...+....|..+++.|+.++|..+++..-...+++...+--+-.||..++++++|+..|++++..+|. -..++.
T Consensus 37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~ 115 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYH 115 (932)
T ss_pred HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHH
Confidence 3455566677778899999999999998888877788888899999999999999999999999999999999 888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+-.+|..-+.|.+-.+.--+..+..|.+.
T Consensus 116 lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 116 LFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 88999999998887776666666777754
No 252
>KOG0546|consensus
Probab=96.77 E-value=0.0038 Score=52.36 Aligned_cols=104 Identities=19% Similarity=0.286 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP-----------S--------SALLYAKRGQSYLQLSKPNACIRDCSV 172 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p-----------~--------~~~~~~~la~~~~~~~~~~~Ai~~~~~ 172 (231)
........+...++.++|..|...|.++++.-. + -...+.+++.+-++.+.+..|+.....
T Consensus 221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~ 300 (372)
T KOG0546|consen 221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE 300 (372)
T ss_pred hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence 345566778889999999999999999886411 1 134566788999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 173 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
++..++....+++.+|..+..+.++++|+..+..+....|++.
T Consensus 301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 9999999999999999999999999999999999999999875
No 253
>KOG1915|consensus
Probab=96.76 E-value=0.022 Score=49.85 Aligned_cols=98 Identities=17% Similarity=0.100 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
+..|...|....+..+...|...+-.||...|.+ ..+...-.+-.++++++.+...|++-|+..|.+..+|...|..-.
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~ 482 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELET 482 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH
Confidence 4555566666667777777777777777777754 334444555567778888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhcC
Q psy13481 193 LLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~ 211 (231)
.+|+++.|...|.-|+...
T Consensus 483 ~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 483 SLGDTDRARAIFELAISQP 501 (677)
T ss_pred HhhhHHHHHHHHHHHhcCc
Confidence 8888888888888777654
No 254
>PLN03077 Protein ECB2; Provisional
Probab=96.75 E-value=0.029 Score=53.72 Aligned_cols=106 Identities=13% Similarity=-0.023 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKL--NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP--DSAAAYKFRGR 189 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p--~~~~~~~~lg~ 189 (231)
..|..+...+...|+.++|+.+|++..+. .|+. ..+..+-.++.+.|++++|...|+......+ -+...|..+..
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 44556666667777777777777776653 4543 3344444556677777777777777664332 23456677777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~ 221 (231)
++...|++++|...++.. .+.|+...+..+.
T Consensus 634 ~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl 664 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM-PITPDPAVWGALL 664 (857)
T ss_pred HHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHH
Confidence 777777777777777764 4566655444443
No 255
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.011 Score=48.10 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchh
Q psy13481 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226 (231)
Q Consensus 148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~ 226 (231)
....++=..+...+++..|..+.++.+.++|.++.-+.-+|.+|..+|.+.-|+.+++..+...|++.+...++.-..+
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~ 260 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE 260 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444555666777777777777777777777777777777777777777777777777777777776655555544433
No 256
>KOG1586|consensus
Probab=96.74 E-value=0.048 Score=43.55 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH--
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP-----S-SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA-- 182 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p-----~-~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~-- 182 (231)
+.+..+...|+.+-..++|..|=..|-++-..+- + -+..|..-+.|| +..+..+|+.+++++|++..+-.+
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~ 110 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFT 110 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHH
Confidence 3355555666777778899999999998877622 2 245566666666 556999999999999999876544
Q ss_pred ----HHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCHHHHHH
Q psy13481 183 ----AYKFRGRAYRLL-GKWEEAAVDLRNACKIDFDEQADEW 219 (231)
Q Consensus 183 ----~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~ 219 (231)
-+..+|.+|..- .+++.|+.+|+++-.....++....
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 334778887665 8999999999999888766543333
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.71 E-value=0.053 Score=46.57 Aligned_cols=102 Identities=20% Similarity=0.123 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCC
Q psy13481 112 KSNEKKREAIHAYN---DGKFEDAVNAYSE-AIKLNPSSALLYAKRGQSYLQL---------SKPNACIRDCSVALKINP 178 (231)
Q Consensus 112 ~a~~~~~~a~~~~~---~~~~~~Ai~~~~~-al~~~p~~~~~~~~la~~~~~~---------~~~~~Ai~~~~~al~~~p 178 (231)
.....+..|.++.+ .|+.++|+..+.. .....+.+++.+.-.|.+|-.+ ...++|+.+|.++.+++|
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 34556677888887 8999999999988 5555667888898888887542 236789999999999886
Q ss_pred CCHH---------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 179 DSAA---------------------------------------------AYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 179 ~~~~---------------------------------------------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
+... .+.-++.+....|++++|..++++++++.|.
T Consensus 258 ~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 258 DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 5211 1122456677888999999999999999875
No 258
>KOG2796|consensus
Probab=96.70 E-value=0.0068 Score=49.17 Aligned_cols=81 Identities=15% Similarity=0.239 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA---AAYKFR 187 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~l 187 (231)
......+..+.++.-.++|.+|...|++++..+|.++.+.++.|.|++.+|+...|++.++.++.+.|... ...+++
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL 329 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence 34566777888888999999999999999999999999999999999999999999999999999999753 344555
Q ss_pred HHHH
Q psy13481 188 GRAY 191 (231)
Q Consensus 188 g~~~ 191 (231)
..+|
T Consensus 330 ~tmy 333 (366)
T KOG2796|consen 330 TTMY 333 (366)
T ss_pred HHHH
Confidence 4443
No 259
>KOG4814|consensus
Probab=96.53 E-value=0.036 Score=50.11 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
..+++.|..+++..+|..+++.|...+.--|.+ +....+++.||+.+.+.+.|++.++.|=+.+|.++-.-...
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 456777888899999999999999999887754 56778899999999999999999999999999999888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
-.+....|.-++|+.+........-+
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 88888889999999988877765433
No 260
>KOG3824|consensus
Probab=96.50 E-value=0.013 Score=48.55 Aligned_cols=62 Identities=15% Similarity=0.030 Sum_probs=57.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 154 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
|.-..+.|+.++|...|+.|+.+.|+++.++..+|......++.-+|-.+|-+|+.++|.++
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 44446789999999999999999999999999999999999999999999999999999864
No 261
>KOG1308|consensus
Probab=96.48 E-value=0.002 Score=53.75 Aligned_cols=72 Identities=24% Similarity=0.139 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p 178 (231)
+..+..+..+..+|.++++.+++..||..|..++.++|+.+.-|-.+|.++..+|++.+|..++..+++++-
T Consensus 142 ~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 142 ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 344566788888999999999999999999999999999999999999999999999999999999999874
No 262
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.47 E-value=0.082 Score=40.71 Aligned_cols=100 Identities=16% Similarity=0.028 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHH----
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SAA---- 182 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~~~---- 182 (231)
.-..+..+|..+.+.|++++|+..|.++....-.. .+.+.++-.+.+..+++......+.++-.+-.. +..
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 35778899999999999999999999987764432 567888889999999999999999988665432 222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
....-|..+...++|..|...|..+..-.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 33456788888999999999988776544
No 263
>KOG3364|consensus
Probab=96.45 E-value=0.1 Score=38.12 Aligned_cols=81 Identities=9% Similarity=0.004 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHH
Q psy13481 147 ALLYAKRGQSYLQLSK---PNACIRDCSVALK-INPD-SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWL 220 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~---~~~Ai~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l 220 (231)
....+++|-++.+..+ ..+-|..++..+. -.|. .-...|.++..++.+|+|+.++.+....+...|++. +..+-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3445555555555443 3344555555554 2222 223445566666666666666666666666666543 44444
Q ss_pred Hhhchhh
Q psy13481 221 KEVTPNK 227 (231)
Q Consensus 221 ~~~~~~~ 227 (231)
+.+..++
T Consensus 112 ~~ied~i 118 (149)
T KOG3364|consen 112 ETIEDKI 118 (149)
T ss_pred HHHHHHH
Confidence 4444443
No 264
>KOG1941|consensus
Probab=96.43 E-value=0.018 Score=48.80 Aligned_cols=99 Identities=17% Similarity=0.057 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN----- 177 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~----- 177 (231)
...+..+|..+...+|+++|+.+..+|.++-... ..+++.++.++..+|+.-.|.++++.+.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 3566778888889999999999999999874322 4567788999999999999999999987664
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 178 -PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 178 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
+..+..+.-+|.+|+..|+.+.|..-|+.|...-
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 3355677889999999999999999999887654
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.42 E-value=0.039 Score=48.61 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=18.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy13481 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRG 154 (231)
Q Consensus 123 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la 154 (231)
+.+..+...-+..-.+|++++|+.+.+|..+|
T Consensus 178 AWRERnp~aRIkaA~eALei~pdCAdAYILLA 209 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPDCADAYILLA 209 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcc
Confidence 34555566666666666666665555555554
No 266
>KOG4151|consensus
Probab=96.41 E-value=0.022 Score=52.39 Aligned_cols=106 Identities=31% Similarity=0.422 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS----SALLYAKRGQSYLQLS--KPNACIRDCSVALKINPDSAA 182 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~----~~~~~~~la~~~~~~~--~~~~Ai~~~~~al~~~p~~~~ 182 (231)
....+......|+.++..+++..|.--|..++.+-|. .+....+.+.++..+| +|..++..++-++...|....
T Consensus 49 ~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~ 128 (748)
T KOG4151|consen 49 FLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISK 128 (748)
T ss_pred HHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHH
Confidence 3445677888999999999999999999999988773 3566777777777655 899999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
++..++.+|...+.++-|++.+.-....+|.+
T Consensus 129 ~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 129 ALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999987
No 267
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.021 Score=46.50 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=64.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 120 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
=..+...++++.|..+-.+.+.++|+++.-+.-+|.+|.++|.+.-|+.+++..++..|+.+.+-...+...
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 346778899999999999999999999999999999999999999999999999999999988766655443
No 268
>KOG3364|consensus
Probab=96.33 E-value=0.066 Score=39.05 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 113 SNEKKREAIHAYND---GKFEDAVNAYSEAIK-LNPSS-ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 113 a~~~~~~a~~~~~~---~~~~~Ai~~~~~al~-~~p~~-~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
....+.+|..+... .+..+.|.+++..++ -.|.. -++.+.+|..++++++|+.++.+++..++..|+|..+....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 45566777777654 456688999999996 55543 57888899999999999999999999999999999887654
Q ss_pred HHHH
Q psy13481 188 GRAY 191 (231)
Q Consensus 188 g~~~ 191 (231)
-.+.
T Consensus 112 ~~ie 115 (149)
T KOG3364|consen 112 ETIE 115 (149)
T ss_pred HHHH
Confidence 4443
No 269
>KOG1070|consensus
Probab=96.23 E-value=0.076 Score=52.05 Aligned_cols=89 Identities=12% Similarity=-0.021 Sum_probs=64.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q psy13481 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SAAAYKFRGRAYRLLGKWEEAAV 202 (231)
Q Consensus 125 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~ 202 (231)
.-+.+++|.++|+..++..-+....|...|..+++..+-++|...+.+|+.--|. |.......+..-+..|+-+.+..
T Consensus 1542 k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRt 1621 (1710)
T KOG1070|consen 1542 KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRT 1621 (1710)
T ss_pred HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHH
Confidence 3466777777777777776666777777777777777777777777777777776 66666677777777777777777
Q ss_pred HHHHHHhcCCC
Q psy13481 203 DLRNACKIDFD 213 (231)
Q Consensus 203 ~~~~al~l~p~ 213 (231)
.|+-.+.-+|.
T Consensus 1622 lfEgll~ayPK 1632 (1710)
T KOG1070|consen 1622 LFEGLLSAYPK 1632 (1710)
T ss_pred HHHHHHhhCcc
Confidence 77777777765
No 270
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.23 E-value=0.012 Score=33.18 Aligned_cols=29 Identities=38% Similarity=0.452 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
.++.++|.+|..+|++++|...+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45667777777777777777777777654
No 271
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.23 E-value=0.013 Score=32.97 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~ 177 (231)
+.++.++|.+|..+|+|.+|+..+++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3567888888888888888888888888764
No 272
>KOG1585|consensus
Probab=96.22 E-value=0.045 Score=44.03 Aligned_cols=99 Identities=18% Similarity=0.156 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCC
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN------PDS 180 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------p~~ 180 (231)
+.....+|-.....-+.++|+.+|++++.+-..+ .+.+...+.++.++++|.+|...+.+-..++ +.-
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 4444455566667788999999999998874433 4567777899999999999888877644332 334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
.+.+...-.+|....+|..|.++|+....+.
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 4556666667777889999999999877664
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.20 E-value=0.13 Score=43.45 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP----SSALLYAKRGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
+..+...+..+.+.|+++-|...+.++...++ ..+.+....+..+...|+..+|+..++..+.
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555555431 1344555555555555555555555554444
No 274
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.17 E-value=0.071 Score=42.37 Aligned_cols=92 Identities=18% Similarity=0.150 Sum_probs=69.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHh----C-CCC--HHHHHHHHHHHHHcCC-------hHHHHHHHHHHHhhCCC------CH
Q psy13481 122 HAYNDGKFEDAVNAYSEAIKL----N-PSS--ALLYAKRGQSYLQLSK-------PNACIRDCSVALKINPD------SA 181 (231)
Q Consensus 122 ~~~~~~~~~~Ai~~~~~al~~----~-p~~--~~~~~~la~~~~~~~~-------~~~Ai~~~~~al~~~p~------~~ 181 (231)
.+.....+++|+..|.-|+-. . +.. +..+..+|=+|..+|+ +..|+..|.++++.... ..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 344556888999998888754 2 222 5677778888888888 45667777777765532 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
...+.+|..++.+|++++|...|.+++...-.
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 68899999999999999999999999987644
No 275
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.07 E-value=0.12 Score=44.35 Aligned_cols=92 Identities=10% Similarity=0.039 Sum_probs=74.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCChHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHH
Q psy13481 122 HAYNDGKFEDAVNAYSEAIKL----NPSSALLYAKRGQSYLQ---LSKPNACIRDCSV-ALKINPDSAAAYKFRGRAYRL 193 (231)
Q Consensus 122 ~~~~~~~~~~Ai~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~Ai~~~~~-al~~~p~~~~~~~~lg~~~~~ 193 (231)
.|...++|+.-+.+.+..-.+ -++.....+.+|.++.+ .|+.+.|+..+.. .....+.++..+..+|.+|..
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 455668898888888876655 44567778889999999 9999999999999 445556788999999998754
Q ss_pred c---------CCHHHHHHHHHHHHhcCCC
Q psy13481 194 L---------GKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 194 ~---------g~~~~A~~~~~~al~l~p~ 213 (231)
+ ...++|+..|.+++.++|+
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 3 2478899999999999986
No 276
>KOG0530|consensus
Probab=96.05 E-value=0.26 Score=40.19 Aligned_cols=92 Identities=18% Similarity=0.157 Sum_probs=72.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HH
Q psy13481 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS-KPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWE-EA 200 (231)
Q Consensus 123 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A 200 (231)
+.+...-..|+.+-..+|.++|.+..+|..|-.++..++ +..+-+.++...++-+|.|-.+|+.+-.+...+|+.. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 345556678888888888888888888887777777766 5667788888888888888888888888888888877 77
Q ss_pred HHHHHHHHhcCCCH
Q psy13481 201 AVDLRNACKIDFDE 214 (231)
Q Consensus 201 ~~~~~~al~l~p~~ 214 (231)
+++...++..+..+
T Consensus 133 Lef~~~~l~~DaKN 146 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKN 146 (318)
T ss_pred HHHHHHHHhccccc
Confidence 77778887776654
No 277
>KOG1070|consensus
Probab=96.01 E-value=0.12 Score=50.81 Aligned_cols=100 Identities=11% Similarity=-0.030 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS--SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
....|..+|..+++..+-++|-..+.+|+..-|. +..+....|..-++.|+.+.+...|+-.+.-+|.-...|.-+..
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 4567888899999999999999999999999998 78889999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC
Q psy13481 190 AYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~ 211 (231)
.-...|+..-+...|++++.+.
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999875
No 278
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.91 E-value=0.049 Score=37.25 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=38.5
Q ss_pred HHcCChHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 158 LQLSKPNACIRDCSVALKINPD---------SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 158 ~~~~~~~~Ai~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
.+.|+|..|+..+.+.++.... ...++.++|.++...|++++|+..++.|+++-.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4566677776666666555321 124667788888888888888888888888754
No 279
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.90 E-value=0.13 Score=33.83 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALL---YAKRGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
.+......|.-++...+..+|+..++++++..++...- +..+..+|...|+|.+.+.+.-+=++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777888888888888888888877666443 33445667777777777766554443
No 280
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.89 E-value=0.015 Score=32.68 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481 148 LLYAKRGQSYLQLSKPNACIRDCSVALKIN 177 (231)
Q Consensus 148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~ 177 (231)
.+|..+|.+.+..++|.+|+.+|.+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777653
No 281
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.77 E-value=0.071 Score=36.41 Aligned_cols=58 Identities=10% Similarity=0.204 Sum_probs=47.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481 121 IHAYNDGKFEDAVNAYSEAIKLNPS---------SALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178 (231)
Q Consensus 121 ~~~~~~~~~~~Ai~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p 178 (231)
......|+|.+|++.+.+.+..... ...++.++|.++...|++++|+..++.++.+-.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3457789999999998888876332 145678899999999999999999999998864
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.71 E-value=0.56 Score=39.59 Aligned_cols=85 Identities=16% Similarity=0.104 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------------------------CHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS----------------------------------SALLYAKRGQSY 157 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~----------------------------------~~~~~~~la~~~ 157 (231)
........+..+...|+..+|+..++..+..... .+.++..+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999982110 144566667666
Q ss_pred HHc------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy13481 158 LQL------SKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK 196 (231)
Q Consensus 158 ~~~------~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 196 (231)
... +.+++++..|..++.++|.+.++|+.+|..+...=+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 666 778888999999999999999999998887765533
No 283
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.67 E-value=0.058 Score=44.16 Aligned_cols=62 Identities=16% Similarity=0.082 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481 132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193 (231)
Q Consensus 132 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~ 193 (231)
|+.+|.+|+.+.|.+...|+.+|.++...|+.-.|+-+|-+++-..--.+.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997765668888888888877
No 284
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=95.60 E-value=0.14 Score=42.20 Aligned_cols=74 Identities=30% Similarity=0.357 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhcCCCHHHHHHH
Q psy13481 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA-------CKIDFDEQADEWL 220 (231)
Q Consensus 148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------l~l~p~~~~~~~l 220 (231)
..+...+..|...|.+.+|+..+++++.++|-+...+..+-.++..+|+--.+.+.|++. +-++-++...+|.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieewy 359 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEWY 359 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHHh
Confidence 345566889999999999999999999999999999999999999999966666666554 4456677777776
Q ss_pred H
Q psy13481 221 K 221 (231)
Q Consensus 221 ~ 221 (231)
+
T Consensus 360 ~ 360 (361)
T COG3947 360 K 360 (361)
T ss_pred h
Confidence 5
No 285
>KOG2396|consensus
Probab=95.56 E-value=0.11 Score=45.73 Aligned_cols=75 Identities=11% Similarity=0.120 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK-PNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
+...|.......-+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|...+.++|..+|+++..|..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 355666666555666679999999999999999999999999999998886 899999999999999999987754
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.56 E-value=0.68 Score=38.25 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481 129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208 (231)
Q Consensus 129 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 208 (231)
|..=+...++++.- ....++..++..+...++++.++..+++.+.++|.+-..|..+-.+|...|+...|+..|.+.-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44444444444332 3466788889999999999999999999999999999999999999999999999999888877
Q ss_pred h-------cCCCHHHHHHHHhh
Q psy13481 209 K-------IDFDEQADEWLKEV 223 (231)
Q Consensus 209 ~-------l~p~~~~~~~l~~~ 223 (231)
+ ++|...+.....++
T Consensus 215 ~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 215 KTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHhhhhcCCCccHHHHHHHHHH
Confidence 6 34555555544444
No 287
>KOG4507|consensus
Probab=95.55 E-value=0.062 Score=48.31 Aligned_cols=101 Identities=12% Similarity=0.044 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
...+...+.-+..+|+..+|+.++..++-..|.. ..++..+|.++.+.|...+|--.+..|+.-.|....-++-+|.+
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i 292 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNI 292 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHH
Confidence 3333334444556899999999999999887754 34678899999999999999999999999888888889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
+.++|++......|..+.+.+|.
T Consensus 293 ~aml~~~N~S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 293 YAMLGEYNHSVLCYDHALQARPG 315 (886)
T ss_pred HHHHhhhhhhhhhhhhhhccCcc
Confidence 99999999999999999999986
No 288
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.30 E-value=0.024 Score=47.09 Aligned_cols=80 Identities=10% Similarity=0.112 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAK-RGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
..-..+...|...+.-..+.|-|.+--..|.+++..+|.+++.|.. -+.-+...++++.|...|.+++.+||+++..|+
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3444456677777777778889999999999999999999999986 456677888999999999999999999999875
Q ss_pred H
Q psy13481 186 F 186 (231)
Q Consensus 186 ~ 186 (231)
.
T Consensus 181 e 181 (435)
T COG5191 181 E 181 (435)
T ss_pred H
Confidence 4
No 289
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.22 E-value=0.026 Score=46.89 Aligned_cols=81 Identities=4% Similarity=-0.014 Sum_probs=72.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 135 AYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF-RGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 135 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
.|.++....|+++..|...+..-.+.|-|.+--..|..++..+|.|...|.. .+.=+...++++.+...|.++++++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4556666788999999999999999999999999999999999999999976 556688999999999999999999998
Q ss_pred HH
Q psy13481 214 EQ 215 (231)
Q Consensus 214 ~~ 215 (231)
+.
T Consensus 175 ~p 176 (435)
T COG5191 175 SP 176 (435)
T ss_pred Cc
Confidence 65
No 290
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.28 Score=44.15 Aligned_cols=96 Identities=20% Similarity=0.122 Sum_probs=82.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH-HHHHhhCCCCHHHHHHH------HHHH
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC-SVALKINPDSAAAYKFR------GRAY 191 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~-~~al~~~p~~~~~~~~l------g~~~ 191 (231)
+.......++...++-.+..++..+|++..++.++|.+....|..-.++..+ +.+....|++..+...+ |...
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 6677778889989999999999999999999999999998888766555554 45899999998876666 8888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
..+|+..++..++.++..+.|.+
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999875
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.09 E-value=0.26 Score=40.70 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
...++..++..+...|+++.++..+++.+..+|.+-..|..+=.+|...|+...|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45677788889999999999999999999999999999999999999999999999999987664
No 292
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.09 E-value=0.086 Score=29.21 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCC
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVD--LRNACKIDF 212 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~--~~~al~l~p 212 (231)
.++.+|..+...|++++|++. |+-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 445555556666666666666 335555544
No 293
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.94 E-value=1.3 Score=37.48 Aligned_cols=82 Identities=13% Similarity=0.013 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q psy13481 129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL---LGKWEEAAVDLR 205 (231)
Q Consensus 129 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~ 205 (231)
.+..+..|++|++.+|++..++..+=.+..+..+.+....-+++++..+|.+...|..+-..... .-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 46778999999999999999998888888888899999999999999999998887554332222 235777777777
Q ss_pred HHHhc
Q psy13481 206 NACKI 210 (231)
Q Consensus 206 ~al~l 210 (231)
+++..
T Consensus 127 ~~l~~ 131 (321)
T PF08424_consen 127 KCLRA 131 (321)
T ss_pred HHHHH
Confidence 77764
No 294
>KOG0529|consensus
Probab=94.93 E-value=1 Score=38.99 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=64.2
Q ss_pred HHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------------ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 123 AYNDGKFE-DAVNAYSEAIKLNPSSALLYAKRGQSYLQLS------------KPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 123 ~~~~~~~~-~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~------------~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
....|.|+ +++.+-.+.+..+|+...+|+.+-.++.... -.++-+.....++..||++..+|+.+.+
T Consensus 38 ~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w 117 (421)
T KOG0529|consen 38 KREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKW 117 (421)
T ss_pred HHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 33444444 4666666666777777766665543333222 1344555666677777777777777777
Q ss_pred HHHHcC--CHHHHHHHHHHHHhcCCCH-HHHHHHHhhchhhhc
Q psy13481 190 AYRLLG--KWEEAAVDLRNACKIDFDE-QADEWLKEVTPNKLN 229 (231)
Q Consensus 190 ~~~~~g--~~~~A~~~~~~al~l~p~~-~~~~~l~~~~~~~~k 229 (231)
++...+ +|..-+....+++++||.+ -++..-+-|...+++
T Consensus 118 ~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 118 VLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred HHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 776665 3566777777777777753 255555555554443
No 295
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.89 E-value=0.39 Score=38.16 Aligned_cols=79 Identities=20% Similarity=0.043 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 110 IDKSNEKKREAIHAYNDGKF-------EDAVNAYSEAIKLNPS------SALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~-------~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
...+..+...|..+...|+. ..|++.|.+++..... ...+.+.+|.++.++|++++|+.+|.+++..
T Consensus 115 s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 115 SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 35577777888888888874 4566666666655322 2578889999999999999999999999987
Q ss_pred CCCCH-HHHHHHH
Q psy13481 177 NPDSA-AAYKFRG 188 (231)
Q Consensus 177 ~p~~~-~~~~~lg 188 (231)
...+. ..+..++
T Consensus 195 ~~~s~~~~l~~~A 207 (214)
T PF09986_consen 195 KKASKEPKLKDMA 207 (214)
T ss_pred CCCCCcHHHHHHH
Confidence 65443 3444443
No 296
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.85 E-value=0.14 Score=49.18 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=76.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 120 AIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLS-------KPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 120 a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~-------~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
..+....+.|+.|+..|++.....|.- .++.++.|..++..- .+.+|+..|++.-. .|.-+--|...+.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHH
Confidence 345677789999999999999988854 577888888887643 36677777765432 3455667888899
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCHHHH
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDEQAD 217 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~~~~ 217 (231)
+|..+|+|++-+++|.-|++.+|.+...
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 9999999999999999999999986533
No 297
>KOG2047|consensus
Probab=94.67 E-value=0.79 Score=41.93 Aligned_cols=103 Identities=12% Similarity=-0.014 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC----------------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--NP----------------SSALLYAKRGQSYLQLSKPNACIRDCSV 172 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--~p----------------~~~~~~~~la~~~~~~~~~~~Ai~~~~~ 172 (231)
+-+..|...|..-+...+++.|+.+.+.|... +| ++...|...+...-..|-++.....|++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34778888998888999999999999998865 11 1355777888888889999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 173 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
.|++.--.+..-.|.|..+....-+++|.+.|++.+.+.+-
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999864
No 298
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.59 E-value=0.53 Score=39.80 Aligned_cols=82 Identities=15% Similarity=-0.014 Sum_probs=69.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy13481 133 VNAYSEAIKLNPSSALLYAKRGQSYLQLSK------------PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA 200 (231)
Q Consensus 133 i~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 200 (231)
..-|++.++.+|++..+|..+....-.+-. .+.-+..|++||+.+|++...+..+=.++....+-+..
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 346888999999999999988866655533 45667889999999999999998888888899999999
Q ss_pred HHHHHHHHhcCCCH
Q psy13481 201 AVDLRNACKIDFDE 214 (231)
Q Consensus 201 ~~~~~~al~l~p~~ 214 (231)
.+-+++++..+|++
T Consensus 85 ~~~we~~l~~~~~~ 98 (321)
T PF08424_consen 85 AKKWEELLFKNPGS 98 (321)
T ss_pred HHHHHHHHHHCCCC
Confidence 99999999999974
No 299
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.59 E-value=0.16 Score=28.14 Aligned_cols=31 Identities=10% Similarity=0.028 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHH--HHHHHhhCC
Q psy13481 148 LLYAKRGQSYLQLSKPNACIRD--CSVALKINP 178 (231)
Q Consensus 148 ~~~~~la~~~~~~~~~~~Ai~~--~~~al~~~p 178 (231)
+.|+.+|..+...|+|++|+.. |.-+..+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3455556666666666666666 325555444
No 300
>KOG0530|consensus
Probab=94.54 E-value=0.66 Score=37.89 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=79.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy13481 126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPN-ACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDL 204 (231)
Q Consensus 126 ~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 204 (231)
..+..+-++.+++.+.-+|.+..+|..|-.+.-.+|++. .-+..+..++..+..|-.+|..+-+++...+.|+.-+.+.
T Consensus 91 ~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~ 170 (318)
T KOG0530|consen 91 MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYA 170 (318)
T ss_pred HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 356778899999999999999999999999999999988 8899999999999999999999999999999999999888
Q ss_pred HHHHhcCC
Q psy13481 205 RNACKIDF 212 (231)
Q Consensus 205 ~~al~l~p 212 (231)
...++.|-
T Consensus 171 ~~Lle~Di 178 (318)
T KOG0530|consen 171 DELLEEDI 178 (318)
T ss_pred HHHHHHhh
Confidence 88887763
No 301
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.53 E-value=2.2 Score=35.13 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhhCCCC
Q psy13481 113 SNEKKREAIHAYN----DGKFEDAVNAYSEAIKLNPSS-ALLYAKRGQSYLQLS-------KPNACIRDCSVALKINPDS 180 (231)
Q Consensus 113 a~~~~~~a~~~~~----~~~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~Ai~~~~~al~~~p~~ 180 (231)
+...+.+|..+.. ..++.+|...|.++....-.. ..+.+.+|.+|..-. +...|+..|.++.... +
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~ 186 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N 186 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence 4566677777776 459999999999998885433 344778888886641 2347999999988876 8
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q psy13481 181 AAAYKFRGRAYRL----LGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 181 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p 212 (231)
..+.+.+|.+|.. ..++.+|..+|.++.....
T Consensus 187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888999988755 3388999999999999887
No 302
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.36 E-value=1.1 Score=38.75 Aligned_cols=94 Identities=21% Similarity=0.181 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQS--YLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
..+...+...+-.|+|+.|...|+..+ -+|. ...+..+|.. -.++|.++.|+.+.+++....|.-+.++...=...
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPE-tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAML-DDPE-TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHh-cChH-HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 344556778888999999999999765 3553 3344444443 34688999999999999999999999888887888
Q ss_pred HHcCCHHHHHHHHHHHHh
Q psy13481 192 RLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~ 209 (231)
...|+|+.|++.......
T Consensus 199 ~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 199 CAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HhcCChHHHHHHHHHHHH
Confidence 899999999998876554
No 303
>KOG3617|consensus
Probab=94.36 E-value=0.4 Score=45.06 Aligned_cols=97 Identities=23% Similarity=0.116 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----------HhCCC----------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAI----------KLNPS----------SALLYAKRGQSYLQLSKPNACIRDCSVA 173 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al----------~~~p~----------~~~~~~~la~~~~~~~~~~~Ai~~~~~a 173 (231)
..+++.|..+-..++.+.|+++|+++- .-+|. +..+|.+-|..+-..|+.+.|+..|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 456778888888899999999998753 22443 3456777799999999999999998876
Q ss_pred HhhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 174 LKIN---------------------PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 174 l~~~---------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
-+.. ..+-.+.|.+|..|...|+..+|+.+|.+|...
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4432 345668899999999999999999998887554
No 304
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.24 E-value=1.6 Score=38.42 Aligned_cols=94 Identities=19% Similarity=0.147 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHH-------------------------------------------
Q psy13481 113 SNEKKREAIHAYNDGK-FEDAVNAYSEAIKLNPSSAL------------------------------------------- 148 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~-~~~Ai~~~~~al~~~p~~~~------------------------------------------- 148 (231)
+..+..-|..++..|. -++|+..++.+++..+.+..
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 3444556677777777 77888888888877666422
Q ss_pred ---HHHHH--HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481 149 ---LYAKR--GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207 (231)
Q Consensus 149 ---~~~~l--a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 207 (231)
.-+.+ |..++..|+|.+|.-...=...+.| ++.++..+|.|.....+|++|-.++...
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 11122 4567788999999999888999999 9999999999999999999999988743
No 305
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.10 E-value=0.63 Score=30.62 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF---RGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 150 ~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~---lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
....|.-++..++..+|+..++++++..++...-+.. +..+|...|+|.+.+++-.+-+.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788899999999999999999887765544 45568888999888877554443
No 306
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.07 E-value=0.092 Score=29.48 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
.+|..+|.+....++|+.|+.+|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998764
No 307
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.06 E-value=2.7 Score=36.43 Aligned_cols=98 Identities=19% Similarity=0.175 Sum_probs=67.9
Q ss_pred HHHcCCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481 123 AYNDGKFEDAVNAYSEAIKL---NPSS-----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194 (231)
Q Consensus 123 ~~~~~~~~~Ai~~~~~al~~---~p~~-----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~ 194 (231)
.+..|+|+.|+.+.+..... .++. +.++...+.... .-+...|..+...++++.|+..-+-..-+.+++..
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d 276 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRD 276 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc
Confidence 45667777777777665543 2221 112222222221 22467777788888888888888888889999999
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy13481 195 GKWEEAAVDLRNACKIDFDEQADEWLK 221 (231)
Q Consensus 195 g~~~~A~~~~~~al~l~p~~~~~~~l~ 221 (231)
|+..++-..++.+.+..|+-.+.....
T Consensus 277 ~~~rKg~~ilE~aWK~ePHP~ia~lY~ 303 (531)
T COG3898 277 GNLRKGSKILETAWKAEPHPDIALLYV 303 (531)
T ss_pred cchhhhhhHHHHHHhcCCChHHHHHHH
Confidence 999999999999999999866555443
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.92 E-value=2.3 Score=35.06 Aligned_cols=104 Identities=11% Similarity=-0.010 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCC---C-------HHHHHHHHHHHHHcCChH---HHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDG-KFEDAVNAYSEAIKL----NPS---S-------ALLYAKRGQSYLQLSKPN---ACIRDC 170 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~-~~~~Ai~~~~~al~~----~p~---~-------~~~~~~la~~~~~~~~~~---~Ai~~~ 170 (231)
...-+..++..|...+..+ +++.|+..++++.++ ... . ...+..++.+|...+.++ .|....
T Consensus 31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l 110 (278)
T PF08631_consen 31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNAL 110 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3455788999999999999 999999999999988 221 1 456778899999988765 344455
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 171 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
+.+-.-.|+.+..++..=.++...++.+.+...+.+.+.--+
T Consensus 111 ~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 111 RLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 555556688887775544455558889999888888887543
No 309
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.89 E-value=1.2 Score=31.90 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAI-------KLNPSSAL----LYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al-------~~~p~~~~----~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
+--++..+..++..+...|+|++++..-.+++ +++.+... +.+++|.++-.+|+.++|+..|+.+-++
T Consensus 51 ~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 51 DGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 33456777788899999999998776655555 45666544 4568999999999999999999998764
No 310
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=93.84 E-value=0.12 Score=44.82 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481 118 REAIHAYNDGKFEDAVNAYSEAIKLNPS---------SALLYAKRGQSYLQLSKPNACIRDCSVA 173 (231)
Q Consensus 118 ~~a~~~~~~~~~~~Ai~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~Ai~~~~~a 173 (231)
.+..++.-.|||..|+..++-. .++.. ....++..|-+|+.++||.+|++.|..+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666655554431 22111 1334555555555566665555555443
No 311
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.71 E-value=0.29 Score=40.00 Aligned_cols=61 Identities=15% Similarity=0.068 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCHHHHHHHHhhchh
Q psy13481 166 CIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKEVTPN 226 (231)
Q Consensus 166 Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~l~~~~~~ 226 (231)
|+.+|.+|+.+.|.++..|+.+|.++...|+.=.|+-+|-+++... |-..+...+..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999653 545566666666555
No 312
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.66 E-value=1.6 Score=37.63 Aligned_cols=106 Identities=15% Similarity=-0.118 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----CH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-SA-LLYAKRGQSYLQLSKPNACIRDCSVALKINPD-----SA 181 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-~~-~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~-----~~ 181 (231)
+..--.+++.....+.++|-+..|++..+-.+.++|. ++ .+.+.+-...++.++|+--+..++........ -+
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 3444677888889999999999999999999999998 54 34555666667888998888888876653222 23
Q ss_pred HHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhcCCCH
Q psy13481 182 AAYKFRGRAYRLLGKW---------------EEAAVDLRNACKIDFDE 214 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~---------------~~A~~~~~~al~l~p~~ 214 (231)
..-+.++.+++.+++- +.|...+++|+...|.-
T Consensus 179 n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 179 NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 5678899999999998 89999999999999963
No 313
>KOG0529|consensus
Probab=93.66 E-value=1.1 Score=38.75 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----HHHH
Q psy13481 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK--PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK----WEEA 200 (231)
Q Consensus 127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~----~~~A 200 (231)
.-+++-+.+...+++.+|++..+|+.|.-++.+.+. +..=+..++++++.+|.|..+|..+-.+...... ..+-
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 366777889999999999999999999999988774 6788999999999999999999877766654443 5666
Q ss_pred HHHHHHHHhcCCCH
Q psy13481 201 AVDLRNACKIDFDE 214 (231)
Q Consensus 201 ~~~~~~al~l~p~~ 214 (231)
+.+..+++.-++.|
T Consensus 169 l~ftt~~I~~nfSN 182 (421)
T KOG0529|consen 169 LEFTTKLINDNFSN 182 (421)
T ss_pred HHHHHHHHhccchh
Confidence 77788888777764
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.55 E-value=0.11 Score=26.28 Aligned_cols=22 Identities=32% Similarity=0.084 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDL 204 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~ 204 (231)
+.+.+|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555544
No 315
>KOG4814|consensus
Probab=93.50 E-value=0.36 Score=43.97 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHH
Q psy13481 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDS------AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQA 216 (231)
Q Consensus 149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 216 (231)
.+.+-|.-+++.++|..++++|...+...|.+ ++...+++.||..+.+.+.|.+.++.|-+.+|.+..
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH
Confidence 45567888999999999999999999877654 567888999999999999999999999999987653
No 316
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=93.37 E-value=0.11 Score=41.51 Aligned_cols=107 Identities=15% Similarity=0.067 Sum_probs=67.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCChH-HH-HHHHHHHHhhC--CCC--HHHH
Q psy13481 123 AYNDGKFEDAVNAYSEAIKLNPSS------------ALLYAKRGQSYLQLSKPN-AC-IRDCSVALKIN--PDS--AAAY 184 (231)
Q Consensus 123 ~~~~~~~~~Ai~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~-~A-i~~~~~al~~~--p~~--~~~~ 184 (231)
++.-|+|+.|++...-||+.+-.- ++-...-+...+..|+.- -. ...+..+..-. |+- ++.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 466799999999999999874322 222223344455556521 11 11122221111 222 3456
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhhc
Q psy13481 185 KFRGRAYR---------LLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLN 229 (231)
Q Consensus 185 ~~lg~~~~---------~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~k 229 (231)
...|..+. ..++...|+..|++|+.++|.......++++...++.
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhh
Confidence 66777773 4568889999999999999997778888888777654
No 317
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.37 E-value=2 Score=37.02 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCC---HHHHHHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------------------------NPSS---ALLYAKRGQSY 157 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------------------------~p~~---~~~~~~la~~~ 157 (231)
...|-.+..+.+.+.++...|++..|-++.++|+-. .+.| ..+.++....+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 455666788888888888888888888888888632 1111 33555667777
Q ss_pred HHcCChHHHHHHHHHHHhhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q psy13481 158 LQLSKPNACIRDCSVALKINPD-SAA-AYKFRGRAYRLLGKWEEAAVDLRN 206 (231)
Q Consensus 158 ~~~~~~~~Ai~~~~~al~~~p~-~~~-~~~~lg~~~~~~g~~~~A~~~~~~ 206 (231)
.+.|-+.-|+++++-.+.++|. ++- +++.+-......++|+--+..+..
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 7888888888888888888887 653 444444455555666655555544
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.36 E-value=0.41 Score=27.79 Aligned_cols=25 Identities=28% Similarity=0.199 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 185 KFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 185 ~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
+.++.+|..+|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777774
No 319
>KOG2300|consensus
Probab=93.24 E-value=2.1 Score=38.04 Aligned_cols=97 Identities=21% Similarity=0.145 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-S--ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS--------- 180 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~--------- 180 (231)
+...+.+|.....-+.|+.|...|..|+++-.. + +-+-.++|.+|++.++-+.-.+.++ .+.|.|
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHH
Confidence 445556676777779999999999999987443 2 3345578999999887544333332 233432
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 181 -AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 181 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
..+++..|...+..+++.+|...++..+++.-
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman 476 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMAN 476 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 34788899999999999999999999999874
No 320
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.22 E-value=1.1 Score=36.99 Aligned_cols=91 Identities=23% Similarity=0.191 Sum_probs=66.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhC----C---CC------
Q psy13481 123 AYNDGKFEDAVNAYSEAIKLN----PSS----ALLYAKRGQSYLQLS-KPNACIRDCSVALKIN----P---DS------ 180 (231)
Q Consensus 123 ~~~~~~~~~Ai~~~~~al~~~----p~~----~~~~~~la~~~~~~~-~~~~Ai~~~~~al~~~----p---~~------ 180 (231)
+...|+++.|..+|.++-... |+. +..+++.|...+..+ +|..|+.++++++++- . .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457789999999988887654 322 668889999999999 9999999999999882 1 11
Q ss_pred -HHHHHHHHHHHHHcCCHHHH---HHHHHHHHhcCCC
Q psy13481 181 -AAAYKFRGRAYRLLGKWEEA---AVDLRNACKIDFD 213 (231)
Q Consensus 181 -~~~~~~lg~~~~~~g~~~~A---~~~~~~al~l~p~ 213 (231)
..++..++.+|...+.++.. ...++.+-.-.|+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~ 119 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN 119 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC
Confidence 23677889999888876544 4444444444555
No 321
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.22 E-value=2.1 Score=32.30 Aligned_cols=77 Identities=17% Similarity=0.092 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV 223 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~ 223 (231)
...+..+..+-...++..++...+.-.-.+.|.++..-..-|+.+...|+|.+|+..|+....-.|... ...++.-|
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 345666677777888999999999999999999999999999999999999999999999988888655 44444433
No 322
>KOG1258|consensus
Probab=93.12 E-value=2.9 Score=37.91 Aligned_cols=112 Identities=12% Similarity=0.002 Sum_probs=96.1
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCH
Q psy13481 103 IEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-PDSA 181 (231)
Q Consensus 103 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-p~~~ 181 (231)
..+.+-+..+...|......-...|++....-.|++++--......+|.+.+......|+..-|-..+.++.++. |..+
T Consensus 287 fhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~ 366 (577)
T KOG1258|consen 287 FHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP 366 (577)
T ss_pred cccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc
Confidence 344445566678888888888899999999999999999998999999999999999999999988888888776 5667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
......+......|++..|...|++...-.|+.
T Consensus 367 ~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~ 399 (577)
T KOG1258|consen 367 IIHLLEARFEESNGNFDDAKVILQRIESEYPGL 399 (577)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch
Confidence 777788888899999999999999999887873
No 323
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.03 E-value=0.97 Score=34.76 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
..++..+|..|.+.|+++.|++.|.++.+..... ...+..+-.+....|+|........++-.+-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 4688899999999999999999999988876443 24667788889999999999999999887654
No 324
>KOG1914|consensus
Probab=93.02 E-value=0.72 Score=41.31 Aligned_cols=102 Identities=14% Similarity=0.030 Sum_probs=74.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183 (231)
Q Consensus 104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~ 183 (231)
+..+++|.+..+|+.+-..+..+ -+++..+.|++.+...|.++.+|.......+..++|......|.++|..- -|...
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDL 88 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDL 88 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhH
Confidence 34456778888888888777766 89999999999999999999999999999999999999999998888643 22334
Q ss_pred H-HHHHHHHHHcCCHHHHHHHHHHH
Q psy13481 184 Y-KFRGRAYRLLGKWEEAAVDLRNA 207 (231)
Q Consensus 184 ~-~~lg~~~~~~g~~~~A~~~~~~a 207 (231)
| +.+..+..-.|+...+....-+|
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qA 113 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQA 113 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHH
Confidence 4 23455555566555544333333
No 325
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=93.02 E-value=0.44 Score=41.44 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=45.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHH-------Hhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 152 KRGQSYLQLSKPNACIRDCSVA-------LKI-NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 152 ~la~~~~~~~~~~~Ai~~~~~a-------l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
.+..++.-+|+|..|++.++-. +.. -+.+...+|..|.+|.++++|.+|++.|...+-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999887532 111 245677889999999999999999999988774
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.98 E-value=0.14 Score=25.86 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q psy13481 149 LYAKRGQSYLQLSKPNACIRDCS 171 (231)
Q Consensus 149 ~~~~la~~~~~~~~~~~Ai~~~~ 171 (231)
+++.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45666677777777777666554
No 327
>KOG1550|consensus
Probab=92.89 E-value=2.1 Score=39.08 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhhC
Q psy13481 113 SNEKKREAIHAYN-----DGKFEDAVNAYSEAIKL-----NPSSALLYAKRGQSYLQLS-----KPNACIRDCSVALKIN 177 (231)
Q Consensus 113 a~~~~~~a~~~~~-----~~~~~~Ai~~~~~al~~-----~p~~~~~~~~la~~~~~~~-----~~~~Ai~~~~~al~~~ 177 (231)
+......|.+++. .+|.+.|+.+|..+... .-..+.+.+.+|.+|.+-. ++..|+..+.++-+..
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence 4444445544443 36888888888887661 1114456677777777743 5667777777777664
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC
Q psy13481 178 PDSAAAYKFRGRAYRLLG---KWEEAAVDLRNACKID 211 (231)
Q Consensus 178 p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~ 211 (231)
++.+.+.+|.++..-. ++..|.++|..|....
T Consensus 324 --~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 324 --NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred --CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 5556666777666555 4567777777776554
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.80 E-value=2 Score=33.66 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=57.4
Q ss_pred HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHH
Q psy13481 125 NDGKFEDAVNAYSEAIKLNP--SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD----SAAAYKFRGRAYRLLGKWE 198 (231)
Q Consensus 125 ~~~~~~~Ai~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~ 198 (231)
.+-.-+.|...|-++ +-.| +.+...+.+|..|. ..+..+++..+.+++++... |+.++..++.++..+|+++
T Consensus 118 sr~~d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGDQEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 333335566555543 2233 56889999998876 67889999999999999754 5889999999999999999
Q ss_pred HHH
Q psy13481 199 EAA 201 (231)
Q Consensus 199 ~A~ 201 (231)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 885
No 329
>KOG1550|consensus
Probab=92.59 E-value=3.2 Score=37.92 Aligned_cols=90 Identities=18% Similarity=0.072 Sum_probs=72.0
Q ss_pred HHHHHHHHc----C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 118 REAIHAYND----G-KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS---KPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 118 ~~a~~~~~~----~-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
.+|..+... . ++..|+.+|.++.... ++.+.+.+|.++..-. ++..|..+|..|... .+..+.+++|.
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~ 368 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLAL 368 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHH
Confidence 455555553 2 7889999999998875 4577888898887766 578999999998876 47889999999
Q ss_pred HHHHc----CCHHHHHHHHHHHHhcC
Q psy13481 190 AYRLL----GKWEEAAVDLRNACKID 211 (231)
Q Consensus 190 ~~~~~----g~~~~A~~~~~~al~l~ 211 (231)
||..- -+...|..+|.++...+
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 88653 37889999999999988
No 330
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.49 E-value=1.4 Score=38.83 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSV 172 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~ 172 (231)
.....-|.-++..|+|.++.-+-.-..++.| ++.++..+|.|++..++|.+|..++..
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3445567788999999999999999999999 999999999999999999999988854
No 331
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=92.13 E-value=0.71 Score=34.13 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (231)
......|..++..|+|.-|..+.+.++..+|++..+...++.++.++|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888888888888888888877766664
No 332
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.06 E-value=0.51 Score=24.43 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy13481 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQ 155 (231)
Q Consensus 127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~ 155 (231)
|+++.|...|++++...|.+..+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677777777777777777777776654
No 333
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=92.05 E-value=1.3 Score=34.32 Aligned_cols=57 Identities=25% Similarity=0.154 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHH
Q psy13481 163 PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWL 220 (231)
Q Consensus 163 ~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l 220 (231)
....++..++.+...| ++.++.+++.++..+|+.++|....+++..+.|.+....+.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~ 183 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ 183 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3455666777777777 77888999999999999999999999999999977666655
No 334
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.97 E-value=6.1 Score=32.50 Aligned_cols=82 Identities=23% Similarity=0.212 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------
Q psy13481 128 KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG-------- 195 (231)
Q Consensus 128 ~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g-------- 195 (231)
+...|+..|.++-... +..+.+++|.+|.. ..++.+|+.+|.++.+... ..+.+.++ +++..|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 3447999999987775 78899999988865 3489999999999999886 88889999 777766
Q ss_pred -------CHHHHHHHHHHHHhcCCCH
Q psy13481 196 -------KWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 196 -------~~~~A~~~~~~al~l~p~~ 214 (231)
+...|...+..+....+..
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChh
Confidence 8888999999998887753
No 335
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.74 E-value=1.6 Score=38.85 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=56.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy13481 122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA 201 (231)
Q Consensus 122 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 201 (231)
..+..|+...|-..+..+++..|..+.....++.++..+|.|+.|..++.-+=.+-....++..-+-...+.+|+|++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 44677999999999999999999999999999999999999999988876554443333333333333344444444443
No 336
>KOG2581|consensus
Probab=91.66 E-value=2.7 Score=36.54 Aligned_cols=109 Identities=12% Similarity=0.022 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C-C--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CCCHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL---N-P--SSALLYAKRGQSYLQLSKPNACIRDCSVALKIN----PDSAA 182 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~---~-p--~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~----p~~~~ 182 (231)
+..|+.....+-..|+...-...+...+.. . - .-+...+.+-.+|+..+-|++|-....++.--. ...+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 455555666666677766555555554443 1 1 225567778888889999999987777665211 13355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~ 221 (231)
.+|.+|.+..-+++|..|.++|-+|+...|.+.+.-..+
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q 287 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQ 287 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHH
Confidence 778899999999999999999999999999754443333
No 337
>KOG0546|consensus
Probab=91.62 E-value=0.15 Score=43.10 Aligned_cols=82 Identities=17% Similarity=0.113 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy13481 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG 195 (231)
Q Consensus 116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g 195 (231)
....+...+..+.+..|+..-..+++.++....+++.++..+..+.++++|++++..+....|++......+..+-....
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 33466677778889999988888888889899999999999999999999999999999999999887666655544444
Q ss_pred CH
Q psy13481 196 KW 197 (231)
Q Consensus 196 ~~ 197 (231)
++
T Consensus 358 ~~ 359 (372)
T KOG0546|consen 358 QY 359 (372)
T ss_pred HH
Confidence 43
No 338
>KOG1839|consensus
Probab=91.49 E-value=0.58 Score=45.85 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-- 177 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-- 177 (231)
.+++.+..+..++..+...+++++|+..-.++.-+ .|+....+.+++...+..++...|+..+.++..+.
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 45667888899999999999999999887777644 45567889999999999999999999999987764
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 178 ------PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 178 ------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
|.-+....+++.++...++++.|+.+++.|+++.
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4445567889999999999999999999999854
No 339
>KOG1310|consensus
Probab=90.97 E-value=0.56 Score=41.94 Aligned_cols=72 Identities=15% Similarity=0.045 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481 110 IDKSNEKKREAIHAYND---GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~---~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~ 181 (231)
+.....+..+|.+++++ |+.-.|+.....|++++|....+|+.++.++..++++.+|+.+...+...+|.+.
T Consensus 405 ~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 405 PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 33455666677777765 4556788888889999999999999999999999999999999999999888554
No 340
>KOG0686|consensus
Probab=90.91 E-value=2.4 Score=36.81 Aligned_cols=96 Identities=19% Similarity=0.055 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCCH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS---SALLYAKRGQSYLQLSKPNACIRDCSVALKIN--------PDSA 181 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--------p~~~ 181 (231)
-.++..+|..|+.-|+++.|+..|.++-...-. ....|.+.-.+-..+|+|..-.....+|...- --.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 356677889999999999999999995443322 36778888888999999999888888887651 1234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNAC 208 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al 208 (231)
...+.-|.+...+++|..|.+.|-.+.
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 577788899999999999999887664
No 341
>KOG2047|consensus
Probab=90.69 E-value=5.7 Score=36.68 Aligned_cols=104 Identities=12% Similarity=-0.053 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHH--
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP--DSAAAYKF-- 186 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p--~~~~~~~~-- 186 (231)
.....|...+...-..|-++.....|++.|.+.--.+....|.|..+-...-+.+|.+.|++.|.+.+ .-...|..
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 34556666666667778888888888888888777788888888888877788888888888888873 33344432
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 187 -RGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 187 -lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
....-+.--..+.|...|++|+...|..
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCPPE 583 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Confidence 2222233336788888888888888753
No 342
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.42 E-value=1.8 Score=28.28 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
.+..+..+|..+-+.|++.+|+.+|+++++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3566677788888888888888877776654
No 343
>KOG3807|consensus
Probab=90.36 E-value=3.7 Score=34.87 Aligned_cols=95 Identities=18% Similarity=0.099 Sum_probs=67.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------------------
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN------------------- 177 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------------------- 177 (231)
+..-....+..+..+-|..-..++++||..+.+|..+|.- ...-..+|...+++|+...
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 3344456778888999999999999999999999887642 2222344555555444321
Q ss_pred ----CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 178 ----PDSAA--AYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 178 ----p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
..+.. +...++.|-+.+|+..+|++.++...+-.|=
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 11222 3356899999999999999999998887774
No 344
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.94 E-value=1.7 Score=30.60 Aligned_cols=62 Identities=10% Similarity=0.153 Sum_probs=49.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCH
Q psy13481 153 RGQSYLQLSKPNACIRDCSVALKINPDSAA---AYKFRGRAYRLLGK-----------WEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 153 la~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~lg~~~~~~g~-----------~~~A~~~~~~al~l~p~~ 214 (231)
+|..++..|++-+|++..+..+...+++.. .+..-|.++..++. .-.|+.+|.++..+.|+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 577889999999999999999999987764 44556777765553 345889999999999974
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.72 E-value=1.6 Score=34.18 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS----SALLYAKRGQSYLQLSKPNACIRD 169 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~Ai~~ 169 (231)
++...+.+|..|. ..|..+|+.+|.+++++.+. +++.+..++.++.++|+++.|.-+
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 3556666665544 78999999999999998554 489999999999999999988543
No 346
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.69 E-value=8.4 Score=30.17 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHH--HHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA---LLYAKRGQSYLQLSKPNACIRDCSVALKINPD-SAA--AYK 185 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~-~~~--~~~ 185 (231)
.+...|.........+.. +.+....+.+..++.+. -+-..+|..++..+++++|+..++.++..-.+ +.. +-.
T Consensus 52 ~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 52 EASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 355566666666666665 66777777777776553 23446789999999999999999999865433 333 557
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 186 FRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 186 ~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
+++.+...+|.+++|++.+.....
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~ 154 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKE 154 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhcccc
Confidence 899999999999999998875433
No 347
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.66 E-value=2.3 Score=41.15 Aligned_cols=87 Identities=22% Similarity=0.187 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHH
Q psy13481 128 KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL-----GKWEEAAV 202 (231)
Q Consensus 128 ~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~ 202 (231)
.+.+|+..|++. .-.|.-+-=|...|.+|.++|+|.+-++++..|+...|.++..-...-.+.+.+ .+...|..
T Consensus 534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (932)
T PRK13184 534 DFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALV 612 (932)
T ss_pred HHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666653 224444566888899999999999999999999999999987554443332222 23456777
Q ss_pred HHHHHHhcCCCHH
Q psy13481 203 DLRNACKIDFDEQ 215 (231)
Q Consensus 203 ~~~~al~l~p~~~ 215 (231)
+.--++.+-|...
T Consensus 613 ~~~~~~~~~~~~~ 625 (932)
T PRK13184 613 FMLLALWIAPEKI 625 (932)
T ss_pred HHHHHHHhCcccc
Confidence 8888888888744
No 348
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.52 E-value=8.3 Score=35.67 Aligned_cols=102 Identities=10% Similarity=0.018 Sum_probs=76.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C-------------------HHHHHHHHHHH
Q psy13481 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-------S-------------------ALLYAKRGQSY 157 (231)
Q Consensus 104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-------~-------------------~~~~~~la~~~ 157 (231)
.|.+..--.+-.+..-|...+..+..++|..++.++++.-.+ . ..+.+..+.+.
T Consensus 292 ~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~ 371 (608)
T PF10345_consen 292 SWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN 371 (608)
T ss_pred eecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444455445667777788888888888888888888865111 0 12344567888
Q ss_pred HHcCChHHHHHHHHHHHhhCC---C------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481 158 LQLSKPNACIRDCSVALKINP---D------SAAAYKFRGRAYRLLGKWEEAAVDLR 205 (231)
Q Consensus 158 ~~~~~~~~Ai~~~~~al~~~p---~------~~~~~~~lg~~~~~~g~~~~A~~~~~ 205 (231)
+-++++..|...++.+..... . .+..++..|..+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 889999999999887776542 2 36788999999999999999999998
No 349
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.44 E-value=2.3 Score=35.28 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207 (231)
Q Consensus 149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 207 (231)
.-+.-+.-....|++.+|...|..++...|.+..+...++.||...|+.+.|...+...
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34445667788999999999999999999999999999999999999999998887754
No 350
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=89.27 E-value=3.6 Score=33.34 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS------AAAYKFRGRAYRLLGKWEEAAVDLRNA 207 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~a 207 (231)
......+|.-|+..|+|+.|+..|+.+....... ..++..+..|+..+|+.+..+...-..
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455678999999999999999999997665432 346677888999999988877665443
No 351
>KOG1839|consensus
Probab=89.25 E-value=0.88 Score=44.64 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVN------AYSEAI-KLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN------ 177 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~------~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------ 177 (231)
..+...+..|......+.|.+|.+ +++... .++|..+..|..++.++.+++++++|+....++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 346677788888888899988888 555322 3488889999999999999999999999988876554
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 178 --PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 178 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
|+....|.+++...+..++...|+..+.++..+
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 345568889999999999999999999988876
No 352
>KOG1914|consensus
Probab=89.19 E-value=4.3 Score=36.61 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=67.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 137 SEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 137 ~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
++-|+.+|.+..+|+.+-.-+... .+++....|++.+...|..+.+|..........++|+.-.+.|.+++.-.-+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 677889999999999988766544 9999999999999999999999999999999999999999999999865444
No 353
>KOG2300|consensus
Probab=88.92 E-value=12 Score=33.44 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----------ALLYAKRGQSYLQLSKPNACIRDCSVALKINP---- 178 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p---- 178 (231)
+..-..+|..|...|+-+.-.+.++ .+.|.+ +.+++-.|...+..+++.+|...+.+.+++..
T Consensus 404 a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~ 480 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL 480 (629)
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence 4444567888888776554443333 345542 56778889999999999999999999998761
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCHHHHHHHHhhc
Q psy13481 179 --DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID---FDEQADEWLKEVT 224 (231)
Q Consensus 179 --~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~l~~~~ 224 (231)
-.+-.+..+|.+....|+..++....+-++.+. ||....-|---+.
T Consensus 481 ~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~ 531 (629)
T KOG2300|consen 481 NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSIL 531 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHH
Confidence 123366778999999999999988877776653 5544444443333
No 354
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=88.72 E-value=2 Score=35.20 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=73.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH-----------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHH
Q psy13481 123 AYNDGKFEDAVNAYSEAIKLNPSSAL-----------LYAKRGQSYLQLSKPNACIRDCSVALKINPDS------AAAYK 185 (231)
Q Consensus 123 ~~~~~~~~~Ai~~~~~al~~~p~~~~-----------~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~ 185 (231)
++..++.=.|+..|...+.-.|.+.. .++....++ ..-....|.+.++.|+.+.-.- .-+.+
T Consensus 5 L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~-s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~ 83 (368)
T COG5091 5 LYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWH-SDATMENAKELLDKALMTAEGRGDRSKIGLVNF 83 (368)
T ss_pred hhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhh-cccChhhHHHHHHHHHHhhhccCCcceeeeehh
Confidence 44555666677777777777776632 222223222 2224567888889988775321 22557
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhhc
Q psy13481 186 FRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLN 229 (231)
Q Consensus 186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~k 229 (231)
.++..|+...+|+.|..+|..|..+.-++....|..++..++.+
T Consensus 84 ~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~ 127 (368)
T COG5091 84 RYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNK 127 (368)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhH
Confidence 78999999999999999999999998888777777777666543
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.68 E-value=3.2 Score=33.14 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=55.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~ 182 (231)
-...+.+.+...+||...+.-++.+|.+......+-..+.-.|+|++|..-++-+-.+.|....
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 4457788889999999999999999999888888888888999999999999999999887653
No 356
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.46 E-value=3.5 Score=26.89 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q psy13481 150 YAKRGQSYLQLSKPNACIRDCSVAL 174 (231)
Q Consensus 150 ~~~la~~~~~~~~~~~Ai~~~~~al 174 (231)
+..+|.-+-+.|++.+|+.+|+.++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3344444445555555555554443
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.45 E-value=4.2 Score=32.54 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=35.0
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 156 SYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 156 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
-+++.+...+||...+.-++-+|.+......+-..+...|+|++|...++-+-.+.|.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 3445555566666666666666666665555666666666666666666666666655
No 358
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=88.21 E-value=4.3 Score=34.46 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy13481 126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN--PDSAAAYKFRGRAYRLLGKWEEAAVD 203 (231)
Q Consensus 126 ~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~ 203 (231)
.-+|..-..+|+-...+.| ++.+-.|++.+..+..-...++...+.....- ....-.+..+|..+..+|+.++|...
T Consensus 309 dtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 309 DTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred CCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence 3477777777777777776 66777788888888877888888887666542 23344667789999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHh
Q psy13481 204 LRNACKIDFDEQADEWLKE 222 (231)
Q Consensus 204 ~~~al~l~p~~~~~~~l~~ 222 (231)
|.+++.+.++..-..++..
T Consensus 388 ydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 388 YDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHHHhcCChHHHHHHHH
Confidence 9999999998665555543
No 359
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.20 E-value=2.3 Score=31.45 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy13481 146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEE 199 (231)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 199 (231)
-......++...+..|+|.-|...++.++..+|+|..+...++.++..+|.-.+
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 356667788888999999999999999999999999999999999988875443
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.94 E-value=2.5 Score=35.17 Aligned_cols=57 Identities=19% Similarity=0.130 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~a 173 (231)
...+..+...|.+.+|+.+.++++.++|=+...|..+-.++..+|+--.++..|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 345677889999999999999999999999999999999999999988888887764
No 361
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.71 E-value=9.4 Score=36.44 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS---------SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA--- 181 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~--- 181 (231)
......|..+....++.+|..+..++-..-+. .+..-..+|.+....|+++.|+...+.++..-|.+.
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 33445667778889999999999888776444 145566679999999999999999999999887653
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 182 --AAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 182 --~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
.++...|.+....|++.+|..+.+.+.++.
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 377889999999999999999999998873
No 362
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.54 E-value=5 Score=32.52 Aligned_cols=61 Identities=10% Similarity=0.022 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVAL 174 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al 174 (231)
......|..++..|+|++|+.+|+.+....... ..+...+..|...+|+.+..+..+-+.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 445678999999999999999999997664322 5667788999999999988877765443
No 363
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.50 E-value=16 Score=33.75 Aligned_cols=101 Identities=13% Similarity=0.039 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---
Q psy13481 110 IDKSNEKKREAIHAY-NDGKFEDAVNAYSEAIKLNPS--S----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--- 179 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~-~~~~~~~Ai~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--- 179 (231)
..++.....+|..++ ...+++.|..++.+++.+... . ..+.+.++.++.+.+... |+..++++|+..-.
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 344788889998888 679999999999999988643 2 234556688888888777 99999999987654
Q ss_pred CHHHH-HHHH-HHHH-HcCCHHHHHHHHHHHHhcC
Q psy13481 180 SAAAY-KFRG-RAYR-LLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 180 ~~~~~-~~lg-~~~~-~~g~~~~A~~~~~~al~l~ 211 (231)
+...| +.+- ..+. ..+++..|+..++....+.
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 22222 2222 2222 2379999999999888775
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.48 E-value=2 Score=38.18 Aligned_cols=96 Identities=10% Similarity=0.085 Sum_probs=76.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWE 198 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 198 (231)
.+...-..|+|+.|...+..+=..-..-..+...+-...++++++..|.....-.+.-.-.++.+...-+..-..+|-++
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence 34455567888888887766555444444566666777889999999999998888877788888887788888899999
Q ss_pred HHHHHHHHHHhcCCCH
Q psy13481 199 EAAVDLRNACKIDFDE 214 (231)
Q Consensus 199 ~A~~~~~~al~l~p~~ 214 (231)
++...|.+.+.++|..
T Consensus 409 ~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 409 KSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHhccCChh
Confidence 9999999999999854
No 365
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.30 E-value=1.3 Score=25.63 Aligned_cols=25 Identities=4% Similarity=0.145 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481 151 AKRGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 151 ~~la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
+.+|.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5689999999999999999999995
No 366
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=87.29 E-value=0.65 Score=22.66 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=11.2
Q ss_pred CCCCCHHHHHHHHHHH
Q psy13481 1 MSGLTPDAINKLQLFL 16 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (231)
|++|++++..+|.++|
T Consensus 7 mmPMSPddy~~l~~~V 22 (23)
T PF12162_consen 7 MMPMSPDDYDELERMV 22 (23)
T ss_dssp ---S-HHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhh
Confidence 7899999999999987
No 367
>KOG3617|consensus
Probab=86.95 E-value=6.6 Score=37.46 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH----------HhhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVA----------LKINP----------DSAAAYKFRGRAYRLLGKWEEAAVDLRN 206 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~a----------l~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 206 (231)
-..|++.|..+...++.+.|+++|+++ |.-+| .+...|.+.|.-+...|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 467888999999999999999999864 22233 3556788889999999999999999988
Q ss_pred HHhc
Q psy13481 207 ACKI 210 (231)
Q Consensus 207 al~l 210 (231)
|-..
T Consensus 938 A~D~ 941 (1416)
T KOG3617|consen 938 AKDY 941 (1416)
T ss_pred hhhh
Confidence 8543
No 368
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.83 E-value=11 Score=28.14 Aligned_cols=67 Identities=16% Similarity=0.050 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.+.....+-...+++.++...+...-.+.|+.+..-..-|+.+...|+|.+|+..|+....-.+...
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 3444455555688999999999888899999999999999999999999999999999988776644
No 369
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.11 E-value=3 Score=26.43 Aligned_cols=31 Identities=35% Similarity=0.567 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
.+..+...|...=..|++.+|+.+|..++..
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3556667777777788888888888777654
No 370
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.96 E-value=1.9 Score=37.61 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177 (231)
Q Consensus 118 ~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~ 177 (231)
.+..+|+..++.+-|+.+--+.|.++|....-+.+.|.|+..+.+|.+|.+.+..+.-+.
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888999999999999999999999999999999999999999999888776543
No 371
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=85.28 E-value=7.2 Score=28.14 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHH----Hh
Q psy13481 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---------------ALLYAKRGQSYLQLSKPNACIRDCSVA----LK 175 (231)
Q Consensus 115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~Ai~~~~~a----l~ 175 (231)
.+...|..+++.+++-.++-+|++|+.+..+- .....|+|..+...|+.+-.+++++-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 35568899999999999999999999863221 335668999999999999889888754 55
Q ss_pred hCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481 176 INPDSAA-----AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223 (231)
Q Consensus 176 ~~p~~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~ 223 (231)
+-|.-+. ....+|.|- .| +-.-++..|+-.+.+.++.+
T Consensus 83 LiPQCp~~~C~afi~sLGCCk-------~A---Ll~F~KRHPNP~iA~~vq~i 125 (140)
T PF10952_consen 83 LIPQCPNTECEAFIDSLGCCK-------KA---LLDFMKRHPNPEIARLVQHI 125 (140)
T ss_pred hccCCCCcchHHHHHhhhccH-------HH---HHHHHHhCCCHHHHHHHHhc
Confidence 5565332 244555543 22 33345667776655555443
No 372
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.18 E-value=3.1 Score=21.24 Aligned_cols=29 Identities=14% Similarity=0.034 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 161 SKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 161 ~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
|+++.|...|++++...|.+...|.....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677888888888888888888776554
No 373
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.41 E-value=27 Score=30.37 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHH--HHHHHHcCChHHHHHHHHHHHh
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA--LLYAKR--GQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~--~~~~~l--a~~~~~~~~~~~Ai~~~~~al~ 175 (231)
......+..+++.++|..|...|..++..-|... ..+..+ |..+...-+|.+|...+++.+.
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566788899999999999999999998633333 344444 5555667789999999987765
No 374
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=83.91 E-value=3.5 Score=26.95 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
.+..+...|..+=+.|+|++|+.+|..+++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3556667777788888888888888887764
No 375
>KOG1258|consensus
Probab=83.75 E-value=11 Score=34.36 Aligned_cols=83 Identities=11% Similarity=-0.033 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q psy13481 130 EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR-GRAYRLLGKWEEAAVDLRNAC 208 (231)
Q Consensus 130 ~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al 208 (231)
..+...|+..+...|....+|...|..-.++|.-+.++..|++++.--|.+...|..+ +.+.-..|+.+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5566778888888898888899999999999999999999999998888777777554 344455667777777778777
Q ss_pred hcCC
Q psy13481 209 KIDF 212 (231)
Q Consensus 209 ~l~p 212 (231)
....
T Consensus 142 ~~vG 145 (577)
T KOG1258|consen 142 SYVG 145 (577)
T ss_pred Hhcc
Confidence 7653
No 376
>PF07939 DUF1685: Protein of unknown function (DUF1685); InterPro: IPR012881 The members of this family are hypothetical eukaryotic proteins of unknown function. The region in question is approximately 100 amino acid residues long.
Probab=83.64 E-value=2.9 Score=26.10 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHH------hhCCCCCCh-hhhhhHHHHHHHcCCC
Q psy13481 4 LTPDAINKLQLFLGAV------KKNPAIFYL-PELKFFKDFVESYGGT 44 (231)
Q Consensus 4 ~~~~~~~~~~~~~~~~------~~~p~~l~~-~~~~~~~~~~~~~g~~ 44 (231)
+|++++++||++|++- +.+|.+... |.|.++-..-..+...
T Consensus 1 lTd~dldELkGc~dLGFgF~~~~~~p~L~~tlPaL~lyyavn~q~~~~ 48 (64)
T PF07939_consen 1 LTDDDLDELKGCIDLGFGFDEEDLDPRLCDTLPALELYYAVNRQYSDH 48 (64)
T ss_pred CcHhHHHHHhhhhhhccccCccccChHHHhhhHHHHHHHHHHHHhccc
Confidence 5789999999999974 344555433 6677776665555544
No 377
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=83.46 E-value=14 Score=32.92 Aligned_cols=30 Identities=23% Similarity=0.128 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208 (231)
Q Consensus 179 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 208 (231)
++..-|..+|......|+++-|..+|+++-
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 477899999999999999999999998874
No 378
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=83.34 E-value=13 Score=33.86 Aligned_cols=92 Identities=20% Similarity=0.156 Sum_probs=74.7
Q ss_pred HHcCCHHH-HHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy13481 124 YNDGKFED-AVNAYSEAIKLNPSSALLYAK--RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA 200 (231)
Q Consensus 124 ~~~~~~~~-Ai~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 200 (231)
+..+.... ++..+...+.+++.+...+.. +...+...+....++-.+..++..+|.+..++.++|.+....|....+
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence 33444444 788888888888888776443 588888899999999999999999999999999999999888887777
Q ss_pred HHHHHH-HHhcCCCHH
Q psy13481 201 AVDLRN-ACKIDFDEQ 215 (231)
Q Consensus 201 ~~~~~~-al~l~p~~~ 215 (231)
...+.. +....|++.
T Consensus 121 ~~~~~~~a~~~~~~~~ 136 (620)
T COG3914 121 LADISEIAEWLSPDNA 136 (620)
T ss_pred HHHHHHHHHhcCcchH
Confidence 776666 888888754
No 379
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=82.74 E-value=7.6 Score=28.03 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 150 YAKRGQSYLQLSKPNACIRDCSVALKINPD---------------SAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 150 ~~~la~~~~~~~~~~~Ai~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
+..+|...++.+++-.+|-+|++|+.+--+ .....++++..++.+|+-+-.+++++-|.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 556788888999999999999988865421 123568999999999999999999987754
No 380
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.75 E-value=4.3 Score=26.60 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
+..+...|...=..|+|++|+.+|.++|..
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 556666777777778888777777766653
No 381
>KOG2041|consensus
Probab=81.68 E-value=10 Score=35.56 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
...-.++...|..+.....|++|.++|.+.-. .-+...|+++++.|.+ ++.....-|.+...+-.+|.
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~ 860 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMAD 860 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHH
Confidence 33456777888888888888888888876532 2345667777777655 45555666777777777777
Q ss_pred HHHHcCCHHHHHHHHHH
Q psy13481 190 AYRLLGKWEEAAVDLRN 206 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~ 206 (231)
++...|.-++|..+|.+
T Consensus 861 mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 861 MFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHhhchHHHHHHHHHh
Confidence 77777777777766654
No 382
>KOG2758|consensus
Probab=81.41 E-value=7.1 Score=33.00 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH--HHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481 132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCS--VALKINP--DSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207 (231)
Q Consensus 132 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~--~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 207 (231)
-+.++++--...|+....++..|...+..|+|..|-.++= +++.-+| ++..+++..-..-..+.+|+.|++.+.+.
T Consensus 114 ~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rL 193 (432)
T KOG2758|consen 114 NLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRL 193 (432)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445555555577778889999999999999988876644 3333333 34555555555667778899999988877
Q ss_pred HhcC
Q psy13481 208 CKID 211 (231)
Q Consensus 208 l~l~ 211 (231)
-+.-
T Consensus 194 re~I 197 (432)
T KOG2758|consen 194 REYI 197 (432)
T ss_pred HHHH
Confidence 6653
No 383
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.40 E-value=23 Score=27.45 Aligned_cols=97 Identities=15% Similarity=0.039 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHHHcCChHHHHHHHHHH-HhhCCCCHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS--S--ALLYAKRGQSYLQLSKPNACIRDCSVA-LKINPDSAAAYKFR 187 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~--~--~~~~~~la~~~~~~~~~~~Ai~~~~~a-l~~~p~~~~~~~~l 187 (231)
..+.+..|.+..+.|+...|+..|.++-+-.|- - -.+...-|.++...|-|++.....+.. -..+|--..+.--|
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 455667788888889999999999987665442 1 123344567777788888766555432 33445555677789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~ 209 (231)
|.+-++.|++..|...|.+...
T Consensus 174 glAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc
Confidence 9999999999999999998876
No 384
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=81.40 E-value=36 Score=30.40 Aligned_cols=92 Identities=12% Similarity=0.046 Sum_probs=58.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHH
Q psy13481 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS--AAAYKFRGRAYRLLGKWEEA 200 (231)
Q Consensus 123 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A 200 (231)
+...|++.-|-..|+-.+...|+++..-+..-..+...++-..|...|++++..-... ...|-.+-.--..-|+...+
T Consensus 442 ~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 442 YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHH
Confidence 4456777777777777777777777776666677777777777777777766554333 23344443444455666666
Q ss_pred HHHHHHHHhcCCCH
Q psy13481 201 AVDLRNACKIDFDE 214 (231)
Q Consensus 201 ~~~~~~al~l~p~~ 214 (231)
...=++-..+.|..
T Consensus 522 ~sLe~rf~e~~pQe 535 (660)
T COG5107 522 YSLEERFRELVPQE 535 (660)
T ss_pred HhHHHHHHHHcCcH
Confidence 66556666666654
No 385
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=81.00 E-value=12 Score=32.93 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HH--------HHHHHHHHHH-HcCC-----hHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS--------AL--------LYAKRGQSYL-QLSK-----PNACIR 168 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~--------~~--------~~~~la~~~~-~~~~-----~~~Ai~ 168 (231)
.........|..++..|+|.+|+..|+.+|..-|-. .. --|-+|...- ..+. .++..+
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR 281 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKR 281 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH
Confidence 334556678999999999999999999999762211 01 1122232221 1111 122223
Q ss_pred HHHHHHh-----hCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhh
Q psy13481 169 DCSVALK-----INPDSAAAYKFRG-RAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNK 227 (231)
Q Consensus 169 ~~~~al~-----~~p~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~ 227 (231)
.++-+.- +.|.|...-.+.| ...++.++|.-|..+-++.+++.|.....+..+++....
T Consensus 282 ~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~ 346 (422)
T PF06957_consen 282 NLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQAC 346 (422)
T ss_dssp HHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3333322 2233322222223 346788999999999999999999865555555555443
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.74 E-value=9.1 Score=29.56 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481 128 KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178 (231)
Q Consensus 128 ~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p 178 (231)
.....++..++.+...| ++..+.+++.++...|+.++|.....++..+.|
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34455666777777788 789999999999999999999999999999999
No 387
>KOG2422|consensus
Probab=80.70 E-value=46 Score=30.54 Aligned_cols=98 Identities=15% Similarity=-0.048 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHcCChHHHHHHHHHHH-----hhCCCCHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-SALL-YAKRGQSYLQLSKPNACIRDCSVAL-----KINPDSAAAYK 185 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-~~~~-~~~la~~~~~~~~~~~Ai~~~~~al-----~~~p~~~~~~~ 185 (231)
..+++..-..+.++|-|..|.+..+-.+.++|. ++-+ .+.+-...++..+|+--|..++..- ..-|+.+ |
T Consensus 342 yL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~---y 418 (665)
T KOG2422|consen 342 YLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG---Y 418 (665)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch---H
Confidence 344445555566789999999999999999998 6544 3444445556677888888777663 3334433 4
Q ss_pred HHHHH--HHHcCC---HHHHHHHHHHHHhcCCC
Q psy13481 186 FRGRA--YRLLGK---WEEAAVDLRNACKIDFD 213 (231)
Q Consensus 186 ~lg~~--~~~~g~---~~~A~~~~~~al~l~p~ 213 (231)
.++.+ |..... -+.|..++.+|+++.|.
T Consensus 419 S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 419 SLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 44444 444443 56799999999999984
No 388
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.30 E-value=4.4 Score=26.45 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
.+..+...|...=..|+|++|+.+|..+++.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3455566666666677777777777777764
No 389
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=79.46 E-value=18 Score=26.63 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 178 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
..++..+..+|.+|...|+..+|-..+.+|.+-
T Consensus 117 ~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 117 EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp -S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344555555555555555555555555555443
No 390
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=79.09 E-value=7 Score=25.30 Aligned_cols=31 Identities=32% Similarity=0.534 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
.+..+...|...-..|+|++|+.+|..++..
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556667777777778888888777777654
No 391
>KOG4563|consensus
Probab=78.68 E-value=12 Score=32.10 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLN--------PSSALLYAKRGQSYLQLSKPNACIRDC 170 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~Ai~~~ 170 (231)
.....+..+...|..++..+++++|...|..|..+. -+...+++..|.++++++++...+-..
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345567888899999999999999999999999872 234678888899999988876655443
No 392
>PF12854 PPR_1: PPR repeat
Probab=78.47 E-value=6.6 Score=21.02 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481 181 AAAYKFRGRAYRLLGKWEEAAVDLR 205 (231)
Q Consensus 181 ~~~~~~lg~~~~~~g~~~~A~~~~~ 205 (231)
...|..+-..|...|+.++|.+.|.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3345555555555566655555554
No 393
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=78.31 E-value=22 Score=31.60 Aligned_cols=32 Identities=9% Similarity=-0.008 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy13481 143 NPSSALLYAKRGQSYLQLSKPNACIRDCSVAL 174 (231)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al 174 (231)
.-++...|..+|...+..|+++-|..+|.++-
T Consensus 343 ~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 343 ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 33567899999999999999999988887653
No 394
>KOG3783|consensus
Probab=78.25 E-value=15 Score=33.13 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCH
Q psy13481 149 LYAKRGQSYLQLSKPNACIRDCSVALKIN---PD----SAAAYKFRGRAYRLLGK-WEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~---p~----~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~ 214 (231)
-+..+|.++..+|+...|..+|..+++.. .. -|-++|.+|..|..+|. ..++.+++.+|-....|.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 35567999999999999999998887432 22 25688999999999998 999999999998887653
No 395
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.02 E-value=5.6 Score=25.94 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481 129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177 (231)
Q Consensus 129 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~ 177 (231)
.++|+.+.++|+..+ ..|+|++|+..|..+++..
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHHH
Confidence 456666666665443 5678888888888888754
No 396
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=77.74 E-value=8.4 Score=24.86 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
.+..+...|..+-..|++++|+.+|..+++.
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455556666666677777777776666543
No 397
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=76.58 E-value=7.1 Score=25.55 Aligned_cols=22 Identities=5% Similarity=-0.076 Sum_probs=11.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q psy13481 154 GQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 154 a~~~~~~~~~~~Ai~~~~~al~ 175 (231)
|.-.=+.|+|.+|+.+|..+|+
T Consensus 13 Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 13 AVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3344455666666665555544
No 398
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=76.50 E-value=8.8 Score=19.91 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=16.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 167 IRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 167 i~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
+.....++..+|.|..+|..+-.+..
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 45566667777777777666655544
No 399
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.96 E-value=57 Score=31.43 Aligned_cols=83 Identities=14% Similarity=0.067 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHH-
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD----SAA- 182 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~----~~~- 182 (231)
+...--.|.+....|++++|+++.+.++..-|.+ ..++...|.+..-.|++.+|......+.++... +..
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~ 537 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3444557888999999999999999999987765 567778899999999999999999999888432 223
Q ss_pred -HHHHHHHHHHHcC
Q psy13481 183 -AYKFRGRAYRLLG 195 (231)
Q Consensus 183 -~~~~lg~~~~~~g 195 (231)
+.+..+.++...|
T Consensus 538 ~~~~~~s~il~~qG 551 (894)
T COG2909 538 WSLLQQSEILEAQG 551 (894)
T ss_pred HHHHHHHHHHHHhh
Confidence 3455677888888
No 400
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=75.09 E-value=27 Score=25.74 Aligned_cols=64 Identities=17% Similarity=0.114 Sum_probs=43.4
Q ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481 114 NEKKREAI-HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177 (231)
Q Consensus 114 ~~~~~~a~-~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~ 177 (231)
..+..+|. .+..+|+-+.--..++...+-+..++.++..+|.+|.++|+..+|-..+.+|.+..
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34455553 44566777776677777776666689999999999999999999999999988753
No 401
>KOG0890|consensus
Probab=75.00 E-value=61 Score=34.74 Aligned_cols=102 Identities=16% Similarity=-0.006 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS--------- 180 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~--------- 180 (231)
...+..|.+.|......|.++.|-..+-.|.+.. -+.++..+|..+...|+-..|+..++..++.+-.+
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 4457889999999999999999999998888876 56899999999999999999999999999776222
Q ss_pred --------HHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCC
Q psy13481 181 --------AAAYKFRGRAYRLLGKWE--EAAVDLRNACKIDFD 213 (231)
Q Consensus 181 --------~~~~~~lg~~~~~~g~~~--~A~~~~~~al~l~p~ 213 (231)
..+....+......|+++ .-++.|..+.++.|.
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 224555566666666643 356889999999883
No 402
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=73.96 E-value=32 Score=30.70 Aligned_cols=73 Identities=8% Similarity=-0.090 Sum_probs=53.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
+-..++|.+...|+++-..+-.++.+++-.+.|.+...-.|-...+|...-..-+..++|......|.+++..
T Consensus 33 erIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 33 ERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3345677788888888888888888888888888888888877777766555555566777766666666654
No 403
>PF12854 PPR_1: PPR repeat
Probab=73.91 E-value=9.7 Score=20.34 Aligned_cols=27 Identities=7% Similarity=0.114 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481 146 SALLYAKRGQSYLQLSKPNACIRDCSV 172 (231)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~ 172 (231)
+...|..+-..|.+.|+.++|+..+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345566666666667777666666543
No 404
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=73.84 E-value=9.6 Score=24.80 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
+..+...|...-..|+|++|+.+|..+|..
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445555666666667777777666666654
No 405
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=73.51 E-value=12 Score=23.97 Aligned_cols=30 Identities=30% Similarity=0.606 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
+..+...|...-..|++++|+.+|..++..
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555666666777777777777776653
No 406
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.45 E-value=58 Score=30.55 Aligned_cols=80 Identities=13% Similarity=-0.000 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481 129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208 (231)
Q Consensus 129 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 208 (231)
.++|...+..+.... .+...+-.+..+-+..+++..+..++...-.-........|.+|.++..+|+.++|...|+++.
T Consensus 295 ~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 295 TDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445555555443222 2333444444455588888887777766433334567788999999888999999999999985
Q ss_pred h
Q psy13481 209 K 209 (231)
Q Consensus 209 ~ 209 (231)
.
T Consensus 374 ~ 374 (644)
T PRK11619 374 Q 374 (644)
T ss_pred c
Confidence 4
No 407
>KOG0985|consensus
Probab=73.44 E-value=37 Score=33.51 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSV 172 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~ 172 (231)
...|.++|.+-.+.|...+||+.|-+| +++..|...-.+..+.|+|++-+.++..
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 456667777777777777777777654 4455555555555566666665555543
No 408
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=73.26 E-value=10 Score=24.69 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
.+..+...|...-..|+|++|+.+|..+|..
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455566666666677777777777666653
No 409
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=73.11 E-value=5 Score=22.94 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhCCCCCChhhhhhHHHHHHH
Q psy13481 11 KLQLFLGAVKKNPAIFYLPELKFFKDFVES 40 (231)
Q Consensus 11 ~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~ 40 (231)
-.+++.++++..|+ +| +.|+.+|+..
T Consensus 14 L~~gL~~l~~~rP~---DP-i~~La~~Ll~ 39 (42)
T PF05186_consen 14 LTEGLAELAKERPE---DP-IEFLAEYLLK 39 (42)
T ss_dssp HHHHHHHHHHH--S---SH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC---Ch-HHHHHHHHHH
Confidence 35788999999998 44 9999999864
No 410
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=72.75 E-value=29 Score=24.12 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
.+......|...+..|||..|.....++-+.
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444455555555566666666665555444
No 411
>KOG0985|consensus
Probab=72.45 E-value=41 Score=33.26 Aligned_cols=62 Identities=18% Similarity=0.094 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 145 SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
+.+..|..+|.+.+..|...+||..|=+ .+++..|...-.+....|.|++-++++..|-+--
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 4578999999999999999999999844 4788888888999999999999999999887653
No 412
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=71.91 E-value=34 Score=24.57 Aligned_cols=81 Identities=22% Similarity=0.256 Sum_probs=53.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH---------HHhhCCCCHHHHHHHHHHHHHc
Q psy13481 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSV---------ALKINPDSAAAYKFRGRAYRLL 194 (231)
Q Consensus 124 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~---------al~~~p~~~~~~~~lg~~~~~~ 194 (231)
...+.+...+.+++.++..++.+...+..+..+|.+.+ ....+..++. ++.+... .+.|-....+|...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~~~~~yd~~~~~~~c~~-~~l~~~~~~l~~k~ 95 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDNKSNHYDIEKVGKLCEK-AKLYEEAVELYKKD 95 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHhccccCCHHHHHHHHHH-cCcHHHHHHHHHhh
Confidence 34578999999999999998888888888888887654 3555666552 1111111 11233455566677
Q ss_pred CCHHHHHHHHHH
Q psy13481 195 GKWEEAAVDLRN 206 (231)
Q Consensus 195 g~~~~A~~~~~~ 206 (231)
|++.+|+..+-.
T Consensus 96 ~~~~~Al~~~l~ 107 (140)
T smart00299 96 GNFKDAIVTLIE 107 (140)
T ss_pred cCHHHHHHHHHH
Confidence 777777766443
No 413
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=71.88 E-value=17 Score=26.04 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCH-HHHHHHHh
Q psy13481 186 FRGRAYRLLGKWEEAAVDLRNACKIDFDE-QADEWLKE 222 (231)
Q Consensus 186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~l~~ 222 (231)
.+|..+...|++++|..+|-+|+.+.|.- .....+++
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~ 105 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQK 105 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 46666677777777777777777777762 23444433
No 414
>KOG2561|consensus
Probab=71.43 E-value=41 Score=29.85 Aligned_cols=98 Identities=17% Similarity=0.087 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCh----------HHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL-----------NPSSALLYAKRGQSYLQLSKP----------NACIRDCS 171 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-----------~p~~~~~~~~la~~~~~~~~~----------~~Ai~~~~ 171 (231)
+..++..|..++....|.+|+.++-.|=+. -.+.+..-.-+--||+.+++. .-|.+.|.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 566788999999999999999887666443 222222223334567777652 22333333
Q ss_pred HHHh--------hC-CCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 172 VALK--------IN-PDSAA------AYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 172 ~al~--------~~-p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
++.. +. +..+. .+..-|.+.+..|+-++|..+|+.+...
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3322 11 22322 3445699999999999999999988653
No 415
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=71.18 E-value=56 Score=30.11 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=41.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy13481 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDL 204 (231)
Q Consensus 125 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 204 (231)
+.+..+.+....+.-+.-...++......|..+-..+..++|-.+|++.+..+|+ ++++..+..+...|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 3344444444444333333334444555566666666666666666666666655 44555555555555555555444
Q ss_pred H
Q psy13481 205 R 205 (231)
Q Consensus 205 ~ 205 (231)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 4
No 416
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=70.73 E-value=57 Score=26.66 Aligned_cols=97 Identities=10% Similarity=0.035 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhh------CC
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL-----NPSSALLYAKRGQSYLQLSKPN-ACIRDCSVALKI------NP 178 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~-~Ai~~~~~al~~------~p 178 (231)
+....++.-+..+++.|++.-|.++..-.++. .+.+.....+++.++.....-. .-....++++.- .-
T Consensus 8 eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~ 87 (260)
T PF04190_consen 8 EAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKF 87 (260)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT
T ss_pred HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCC
Confidence 34566777778889999999888776666654 3445555677787777776432 222233333322 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207 (231)
Q Consensus 179 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 207 (231)
.++..+..+|..+...|++.+|..+|-.+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 47789999999999999999999887543
No 417
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=70.63 E-value=35 Score=28.33 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------------------hHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 131 DAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK----------------------PNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 131 ~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~----------------------~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
.-...++.-++.+|++..++..+|..+....= .+.|+.++.+|+.++|+...++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 34566677778889888888877777665331 46788888889999998888777776
Q ss_pred HHHHHcCC
Q psy13481 189 RAYRLLGK 196 (231)
Q Consensus 189 ~~~~~~g~ 196 (231)
.+-...|+
T Consensus 141 ~~s~~fge 148 (277)
T PF13226_consen 141 NISAYFGE 148 (277)
T ss_pred HHHhhcCC
Confidence 66666665
No 418
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=70.36 E-value=7.6 Score=25.28 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 130 EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 130 ~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
.+|+..+.+|++.+- .|+|.+|+.+|..+|+.
T Consensus 4 ~~A~~l~~~Ave~d~---------------~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEE---------------EGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHHH
Confidence 456666666655432 36666666666666553
No 419
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=70.25 E-value=19 Score=27.94 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=39.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC 170 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~ 170 (231)
...+++++|.|++|.+.+++.+. +|++......+..+-.+...|..-+..|
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnF 167 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNF 167 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhc
Confidence 34678899999999999999988 8888777777777776666665554443
No 420
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=69.32 E-value=9.6 Score=19.08 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNAC 208 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al 208 (231)
|..+-.+|...|++++|...|.+-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444455555566666655555443
No 421
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=68.69 E-value=11 Score=24.25 Aligned_cols=21 Identities=5% Similarity=-0.069 Sum_probs=11.4
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q psy13481 155 QSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 155 ~~~~~~~~~~~Ai~~~~~al~ 175 (231)
..+-..|++++|+..|..+++
T Consensus 16 v~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 16 LKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 333445666666666555544
No 422
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.67 E-value=70 Score=26.90 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCChH
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNP--------SSALLYAKRGQSYLQLSKPN 164 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~ 164 (231)
...|+.+.+.+++++|+..|.+.+...- ..-....+++.+|...|+|.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~ 62 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYC 62 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcc
Confidence 4577888899999999999999987621 12346778899999999863
No 423
>KOG0292|consensus
Probab=67.10 E-value=1.3e+02 Score=29.38 Aligned_cols=118 Identities=17% Similarity=0.190 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C--HHHHHHHHHHHH-----H-----c--CChHHH-
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS--------S--ALLYAKRGQSYL-----Q-----L--SKPNAC- 166 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~--------~--~~~~~~la~~~~-----~-----~--~~~~~A- 166 (231)
......-.+.|..+...|+|.+|++.|+.+|-.-|- - +.-+...+.-|. . + ++...+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 344566778899999999999999999999865331 1 122222221111 1 1 122333
Q ss_pred -HHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhh
Q psy13481 167 -IRDCSVALKINPDSAA-AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNK 227 (231)
Q Consensus 167 -i~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~ 227 (231)
+..|-.-..+.|-+.. ++..--.++++++++..|..+-.+.+++.|..+.....+++....
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~ 1130 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAA 1130 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Confidence 2223233344554443 444444578999999999999999999999866566555555443
No 424
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=66.54 E-value=18 Score=22.74 Aligned_cols=23 Identities=4% Similarity=-0.012 Sum_probs=12.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q psy13481 153 RGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 153 la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
.|.-+-..|+|.+|+..|..+++
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444455666666666665554
No 425
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=66.03 E-value=23 Score=30.38 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSV 172 (231)
Q Consensus 127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~ 172 (231)
+..-+|+..++.++...|.+..+...+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4556899999999999999999999999999999999999999864
No 426
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=65.74 E-value=20 Score=24.68 Aligned_cols=73 Identities=11% Similarity=-0.044 Sum_probs=27.7
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---HHHHHHHHhhchhhh
Q psy13481 156 SYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD---EQADEWLKEVTPNKL 228 (231)
Q Consensus 156 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~l~~~~~~~~ 228 (231)
.|+..+++...+..+....+.-..-+........+...-.+..+|...+++.....-. +.++.....|..+++
T Consensus 23 ~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~~L~~A~~~~~~y~~t~~~~~l~~aW~~y~~v~~~i~ 98 (100)
T PF08771_consen 23 LYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGRDLQEAREWLKRYERTGDETDLNQAWDIYYQVYRRIK 98 (100)
T ss_dssp HHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHhhHHHHHHHHHHHHHHHh
Confidence 3344445544444444433332221222222222222223344444444444433322 334555555554443
No 427
>KOG1464|consensus
Probab=65.70 E-value=20 Score=29.73 Aligned_cols=53 Identities=8% Similarity=0.136 Sum_probs=44.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 124 YNDGKFEDAVNAYSEAIKLNPSS----ALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 124 ~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
+...+.++|+..|++++++.+.. ..++-..-.+++++++|.+-...|.+.+..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45568999999999999998875 346667788999999999999999888763
No 428
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=65.12 E-value=19 Score=19.23 Aligned_cols=13 Identities=8% Similarity=-0.079 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHh
Q psy13481 163 PNACIRDCSVALK 175 (231)
Q Consensus 163 ~~~Ai~~~~~al~ 175 (231)
+.+|+.+|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 3444444444443
No 429
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=64.78 E-value=10 Score=32.95 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcC
Q psy13481 163 PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK------------WEEAAVDLRNACKID 211 (231)
Q Consensus 163 ~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~l~ 211 (231)
...|+.++++|.. -+.|..|..+|-++..+|+ |.+|.+.+.+|-+..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcc
Confidence 4455556666555 3445555555555555554 556666666665544
No 430
>KOG3783|consensus
Probab=64.59 E-value=28 Score=31.44 Aligned_cols=80 Identities=15% Similarity=-0.008 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP--DSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 132 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
+.+.+.......|+++......|..+...|+-+.|+..++.++...- -..-.++.+|+++..+.+|..|...+.....
T Consensus 252 ~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~d 331 (546)
T KOG3783|consen 252 CEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRD 331 (546)
T ss_pred HHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 33444444455666666666666666666666666666666555110 1122445566666666666666655555544
Q ss_pred cC
Q psy13481 210 ID 211 (231)
Q Consensus 210 l~ 211 (231)
+.
T Consensus 332 es 333 (546)
T KOG3783|consen 332 ES 333 (546)
T ss_pred hh
Confidence 43
No 431
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=64.22 E-value=66 Score=27.62 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=48.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 122 HAYNDGKFEDAVNAYSEAIKL--NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 122 ~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
......=...++...+..... -..+..+|.-+|..+.++|+..+|...|++++.+.++.....+.+...
T Consensus 338 Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 338 ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 333333445555555544433 234566788899999999999999999999999998887766655543
No 432
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=63.67 E-value=21 Score=23.54 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHh
Q psy13481 129 FEDAVNAYSEAIKL 142 (231)
Q Consensus 129 ~~~Ai~~~~~al~~ 142 (231)
|+.|....+++|..
T Consensus 5 ~~~A~~~I~kaL~~ 18 (79)
T cd02679 5 YKQAFEEISKALRA 18 (79)
T ss_pred HHHHHHHHHHHhhh
Confidence 44444444444433
No 433
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=63.65 E-value=17 Score=18.96 Aligned_cols=13 Identities=8% Similarity=-0.031 Sum_probs=5.7
Q ss_pred ChHHHHHHHHHHH
Q psy13481 162 KPNACIRDCSVAL 174 (231)
Q Consensus 162 ~~~~Ai~~~~~al 174 (231)
++..|+.+++++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 3444444444443
No 434
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=63.40 E-value=38 Score=24.29 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy13481 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL 148 (231)
Q Consensus 116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~ 148 (231)
-..+|..+...|++++|..+|-.||...|+-..
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 346788888888888888888888888875433
No 435
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.18 E-value=21 Score=23.34 Aligned_cols=25 Identities=8% Similarity=-0.057 Sum_probs=16.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 152 KRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 152 ~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
.+|.-+=+.|+|.+|+.+|..+++.
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444444667788887777777764
No 436
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=62.01 E-value=27 Score=22.66 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=10.6
Q ss_pred HHcCChHHHHHHHHHHHh
Q psy13481 158 LQLSKPNACIRDCSVALK 175 (231)
Q Consensus 158 ~~~~~~~~Ai~~~~~al~ 175 (231)
-..|+|++|+..|..+|+
T Consensus 17 D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 17 DQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 355666666666655554
No 437
>COG4802 FtrB Ferredoxin-thioredoxin reductase, catalytic subunit [Energy production and conversion]
Probab=61.77 E-value=17 Score=25.11 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHhhCCCCCChhhhhhHHHHHHHc
Q psy13481 4 LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESY 41 (231)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~ 41 (231)
++.+.++.|..|++.-.....--..|+..|+..++..+
T Consensus 1 ~~~e~l~~my~~~eq~AeksG~~lnpD~e~~~~v~~gL 38 (110)
T COG4802 1 ESDEELNKMYRFTEQYAEKSGYRLNPDREFTAEVLRGL 38 (110)
T ss_pred CcHHHHHHHHHHHHHHHHhcCceeCCCHHHHHHHHHHH
Confidence 46789999999999999888887889999999998755
No 438
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.67 E-value=75 Score=24.72 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 116 KKREAIHAYNDGKFEDAVNAYSEAI-KLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 116 ~~~~a~~~~~~~~~~~Ai~~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
....|..++..|-|+.-....+..- ..+|--..+.-.+|.+-++-|+|..|..+|..... +...+....+++.+..
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 3456778889999998766655432 23555567778899999999999999999988776 5556666666666544
No 439
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=60.84 E-value=21 Score=18.09 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
|..+-.+|...|++++|...|....+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445556666666666666665543
No 440
>KOG0276|consensus
Probab=60.78 E-value=76 Score=29.49 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=44.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCCHHHH-----------
Q psy13481 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN--------PDSAAAY----------- 184 (231)
Q Consensus 124 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--------p~~~~~~----------- 184 (231)
.+.|+++.|.++..++ ++..-|..+|.+....+++..|.+++.++-.+. ..+...+
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 4445555554443322 445556666666666666666666666554332 1222211
Q ss_pred -HHHH-HHHHHcCCHHHHHHHHHHH
Q psy13481 185 -KFRG-RAYRLLGKWEEAAVDLRNA 207 (231)
Q Consensus 185 -~~lg-~~~~~~g~~~~A~~~~~~a 207 (231)
+|++ .+|...|+++++++.+...
T Consensus 723 ~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 2233 4688889999998887765
No 441
>KOG2581|consensus
Probab=60.48 E-value=45 Score=29.32 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=44.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481 121 IHAYNDGKFEDAVNAYSEAIKL----NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181 (231)
Q Consensus 121 ~~~~~~~~~~~Ai~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~ 181 (231)
..+...+-|+.|-....+..-- +...+.+.+.+|.+..-..+|..|..++-.|+...|.+.
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 3445556777776665554311 112367788889999999999999999999999999754
No 442
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=60.40 E-value=81 Score=24.74 Aligned_cols=95 Identities=20% Similarity=0.039 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP-------SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA--- 182 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p-------~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~--- 182 (231)
...+...+..+...|++++|...++++.+.-. ..+. .+.-|.|-..+..|.+|...+.-.-.-+-.++.
T Consensus 29 i~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe-l~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~ 107 (204)
T COG2178 29 IVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE-LYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELG 107 (204)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcC
Confidence 44556677788889999999999988876421 1223 333466666778899999888766554422221
Q ss_pred ---HHHHHHHH------------HHHcCCHHHHHHHHHHHH
Q psy13481 183 ---AYKFRGRA------------YRLLGKWEEAAVDLRNAC 208 (231)
Q Consensus 183 ---~~~~lg~~------------~~~~g~~~~A~~~~~~al 208 (231)
..|.+|.+ ....|+++.|...+.-.-
T Consensus 108 V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 108 VPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFME 148 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 22444433 456778888876655433
No 443
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=60.36 E-value=39 Score=21.01 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH-----HHHHHHHHHHcCChHHHHHH
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSS-ALL-----YAKRGQSYLQLSKPNACIRD 169 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-~~~-----~~~la~~~~~~~~~~~Ai~~ 169 (231)
+..|..++..|+|=+|=+.++.+....+.. ..+ ...-|..+.+.|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345667777777777777777777654433 111 11224455556666665543
No 444
>KOG3677|consensus
Probab=60.19 E-value=24 Score=30.97 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSA-------LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
..+-..+.-.||+.. --+.+.++|... ..-+..|-+|+.+++|.+|+..|-.++-.--+.-..+-..+.
T Consensus 239 ~GLlR~H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y 314 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTY 314 (525)
T ss_pred HHHHHHHHHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 334445566788554 334556666531 122667899999999999999988776542222223333444
Q ss_pred HHHHcC-CHHHHHHHHHHHHhcCCC
Q psy13481 190 AYRLLG-KWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 190 ~~~~~g-~~~~A~~~~~~al~l~p~ 213 (231)
++...+ +++.-.+.+.-++.+.|.
T Consensus 315 ~~d~inKq~eqm~~llai~l~~yPq 339 (525)
T KOG3677|consen 315 QYDMINKQNEQMHHLLAICLSMYPQ 339 (525)
T ss_pred hHhhhhhhHHHHHHHHHHHHHhCch
Confidence 444433 566677777788888884
No 445
>KOG2758|consensus
Probab=59.83 E-value=68 Score=27.38 Aligned_cols=67 Identities=10% Similarity=0.009 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL----NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
++....++..|...+.-|+|..|-+++-....+ ++++..+..+.-..-.-+.+++.|++++.+.-+.
T Consensus 126 ~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 126 PERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 566888999999999999999998875544443 3334444433333455678899999998876543
No 446
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.81 E-value=36 Score=30.60 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~ 169 (231)
+.....+|...+.+|+|.-+.+++++++-.+|++..+....|.++-++|=-.++-.+
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A~w 508 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESATW 508 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccchh
Confidence 455567888899999999999999999999999999999999999988865554433
No 447
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=59.66 E-value=23 Score=18.96 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy13481 128 KFEDAVNAYSEAIKLNPSSALLYAKRG 154 (231)
Q Consensus 128 ~~~~Ai~~~~~al~~~p~~~~~~~~la 154 (231)
.++.|...|++.+..+|+ ...|...|
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 456777777777777764 45555444
No 448
>KOG1464|consensus
Probab=59.41 E-value=39 Score=28.18 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-------HHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLY-------AKRGQSYLQLSKPNACIRDCSVALKIN--PDSAAAY 184 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~-------~~la~~~~~~~~~~~Ai~~~~~al~~~--p~~~~~~ 184 (231)
.++++.-...+..++|++..+.|++.+..-. ++... +++-......++..---..|+..+..- ..|-..|
T Consensus 66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIk-SAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLW 144 (440)
T KOG1464|consen 66 KALKQMIKINFRLGNYKEMMERYKQLLTYIK-SAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLW 144 (440)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHH-HHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceee
Confidence 4566677788889999999999998874311 11110 000111111112222222333333321 2222233
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481 185 ----KFRGRAYRLLGKWEEAAVDLRNAC 208 (231)
Q Consensus 185 ----~~lg~~~~~~g~~~~A~~~~~~al 208 (231)
..+|..|+..|+|..-.+.+.+.-
T Consensus 145 FKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 145 FKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred eeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 458888888888877666655443
No 449
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.68 E-value=60 Score=23.27 Aligned_cols=80 Identities=16% Similarity=0.077 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHH
Q psy13481 127 GKFEDAVNAYSEAIKLNPSSA-----LLYAKRGQSYLQLSKPNACIRDCSVALK--INPDSAAAYKFRGRAYRLLGKWEE 199 (231)
Q Consensus 127 ~~~~~Ai~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~Ai~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~ 199 (231)
+.-..-...+++++....++. .=+..+-..|...-+ .+...|..... +.-..+..|...|..+...|++++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~ 117 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKK 117 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHH
Confidence 344455566666666543321 111222222222222 66666666554 445677888888888888888888
Q ss_pred HHHHHHHHH
Q psy13481 200 AAVDLRNAC 208 (231)
Q Consensus 200 A~~~~~~al 208 (231)
|.+.|+.++
T Consensus 118 A~~I~~~Gi 126 (126)
T PF08311_consen 118 ADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 888888764
No 450
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=58.22 E-value=21 Score=23.50 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 162 KPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 162 ~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
-|+.|....+++|..+ ..|+.+.|+.+|++++.
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 3556666666666544 34555666666655554
No 451
>KOG0890|consensus
Probab=57.39 E-value=44 Score=35.75 Aligned_cols=87 Identities=15% Similarity=0.170 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHcC
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR-AYRLLG 195 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~-~~~~~g 195 (231)
.+.-..+...|+|..|..+|++++...|+....+...=...+..|.+...+...+-.....+....-|+.+|. +-..++
T Consensus 1453 ~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1453 YQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhc
Confidence 3444555667888888888888888888877777766667777888888888777666666666666666554 445666
Q ss_pred CHHHHHHH
Q psy13481 196 KWEEAAVD 203 (231)
Q Consensus 196 ~~~~A~~~ 203 (231)
+|+.-...
T Consensus 1533 qwD~~e~~ 1540 (2382)
T KOG0890|consen 1533 QWDLLESY 1540 (2382)
T ss_pred chhhhhhh
Confidence 66665544
No 452
>KOG0687|consensus
Probab=56.39 E-value=1.3e+02 Score=25.80 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH-
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP------SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA- 182 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~- 182 (231)
.+..+++...|.-+.+-||-+.|++.+.+.....- +..-+..++|..|....=..+.++-.+..++...++-.
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
Confidence 34467788899999999999999998887765421 22334456677665555455666666666666654322
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 183 --AYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 183 --~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
.-..-|.-+....++.+|...|..++.-.
T Consensus 181 NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 181 NRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 22334566667778888888887776543
No 453
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=55.74 E-value=56 Score=30.11 Aligned_cols=73 Identities=14% Similarity=0.014 Sum_probs=57.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q psy13481 152 KRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVT 224 (231)
Q Consensus 152 ~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~ 224 (231)
..+..+.+.+..+++....+.-+-.....+...+..+..+...|+.+.|-.+|++.+..+|++....|.+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (578)
T PRK15490 13 KTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEARYEYARRLY 85 (578)
T ss_pred hHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 3344555566677777777777766667777888899999999999999999999999999987777766554
No 454
>KOG2041|consensus
Probab=55.23 E-value=33 Score=32.33 Aligned_cols=75 Identities=20% Similarity=0.176 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q psy13481 126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SAAAYKFRGRAYRLLGKWEEAAVD 203 (231)
Q Consensus 126 ~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~ 203 (231)
-|+|++|...|-.+=+.+ .--..+.++|+|-.....++..-.-+.+ --.++.++|..+..+..|++|.++
T Consensus 747 ~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777766665432211 0122344555555444443322111111 124778888888888888888888
Q ss_pred HHHHH
Q psy13481 204 LRNAC 208 (231)
Q Consensus 204 ~~~al 208 (231)
|.+.-
T Consensus 819 Y~~~~ 823 (1189)
T KOG2041|consen 819 YSYCG 823 (1189)
T ss_pred HHhcc
Confidence 77653
No 455
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=54.40 E-value=1.5e+02 Score=27.29 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHH
Q psy13481 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI-----NPDSAAAYKFRGRAYRLLGKWEEAA 201 (231)
Q Consensus 127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~ 201 (231)
.+|.-|+..|-.+-++.|.. .-..++..|++||.. +..+...|..+|-.|+..++|.+|+
T Consensus 274 ~~YPmALg~LadLeEi~pt~---------------~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~ 338 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTP---------------GRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREAL 338 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--T---------------TS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHH
T ss_pred hhCchhhhhhHhHHhhccCC---------------CCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHH
Confidence 35666666666666665532 123455566666543 2345667888999999999999999
Q ss_pred HHHHHHHhc
Q psy13481 202 VDLRNACKI 210 (231)
Q Consensus 202 ~~~~~al~l 210 (231)
..|..|-..
T Consensus 339 ~~Wa~aa~V 347 (618)
T PF05053_consen 339 RSWAEAADV 347 (618)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888654
No 456
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.94 E-value=80 Score=22.64 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy13481 131 DAVNAYSEAIKL--NPSSALLYAKRGQSYLQLSKPNACIRDCSVAL 174 (231)
Q Consensus 131 ~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al 174 (231)
.+.+.|...... .-..+..|..-|..+...|++.+|...|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 777787777664 55678999999999999999999999998875
No 457
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=53.79 E-value=27 Score=22.32 Aligned_cols=18 Identities=11% Similarity=-0.053 Sum_probs=10.5
Q ss_pred HHcCChHHHHHHHHHHHh
Q psy13481 158 LQLSKPNACIRDCSVALK 175 (231)
Q Consensus 158 ~~~~~~~~Ai~~~~~al~ 175 (231)
-..|+|++|+.+|..+++
T Consensus 17 D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 17 DEDGNYEEALELYKEALD 34 (75)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 344666666666665554
No 458
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=53.63 E-value=44 Score=28.67 Aligned_cols=44 Identities=25% Similarity=0.107 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481 162 KPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLR 205 (231)
Q Consensus 162 ~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 205 (231)
..-+|+..++.++...|.|......+..+|..+|-...|...|.
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45689999999999999999999999999999999999988875
No 459
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.43 E-value=1.4e+02 Score=25.26 Aligned_cols=31 Identities=6% Similarity=-0.079 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~ 177 (231)
..+|.++|..|.+.++.+.+.+++.+.+...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a 145 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDA 145 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 5667777777777777766666666655443
No 460
>PF15469 Sec5: Exocyst complex component Sec5
Probab=53.26 E-value=99 Score=23.53 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q psy13481 195 GKWEEAAVDLRNACKIDFD-EQADEWLK 221 (231)
Q Consensus 195 g~~~~A~~~~~~al~l~p~-~~~~~~l~ 221 (231)
...++........+.++++ ++++.|+.
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 3566777777778888874 66777764
No 461
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=53.04 E-value=1.6e+02 Score=25.86 Aligned_cols=97 Identities=16% Similarity=-0.032 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCh-------HHHHHHHHHHHhhC---
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKP-------NACIRDCSVALKIN--- 177 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~-------~~Ai~~~~~al~~~--- 177 (231)
.....+|..++..++|+-|...|+-+.+-.-++ +.+.-..|.+++..+.. +.....++.|+...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 456779999999999999999999988754433 23333446666666632 13333444433222
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 178 --------PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 178 --------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
..-..+....+.++...|.+.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 122346666777888999988888777766655
No 462
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=53.01 E-value=74 Score=22.02 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy13481 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG 195 (231)
Q Consensus 151 ~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g 195 (231)
...|.+-+..|||..|.+.+.++-+..+...-.|..-+.+-..+|
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 344666666777777777777775554444444444444444444
No 463
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=52.99 E-value=48 Score=24.69 Aligned_cols=39 Identities=23% Similarity=0.174 Sum_probs=29.2
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhcCCC-HHHHHHHHhh
Q psy13481 185 KFRGRAYRLLG-KWEEAAVDLRNACKIDFD-EQADEWLKEV 223 (231)
Q Consensus 185 ~~lg~~~~~~g-~~~~A~~~~~~al~l~p~-~~~~~~l~~~ 223 (231)
..+|..+...| ++.+|..+|-+|+.+.|. ......+...
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq~t 134 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQQT 134 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHHhh
Confidence 35788888888 889999999999999887 3344444443
No 464
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=52.87 E-value=1.6e+02 Score=25.74 Aligned_cols=63 Identities=11% Similarity=-0.128 Sum_probs=44.0
Q ss_pred HHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHH--HHHHHHcCChHHHHHHHH
Q psy13481 109 DIDKSNEKK--REAIHAYNDGKFEDAVNAYSEAIKLNPS-----SALLYAKR--GQSYLQLSKPNACIRDCS 171 (231)
Q Consensus 109 ~~~~a~~~~--~~a~~~~~~~~~~~Ai~~~~~al~~~p~-----~~~~~~~l--a~~~~~~~~~~~Ai~~~~ 171 (231)
++..+.... ..+..+++.++|..|...|..++...+. ....+..+ |..+...=+|.+|...++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 333344443 3566899999999999999999988542 23344444 455556678899999988
No 465
>PF13041 PPR_2: PPR repeat family
Probab=52.81 E-value=43 Score=19.19 Aligned_cols=23 Identities=9% Similarity=-0.028 Sum_probs=9.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q psy13481 152 KRGQSYLQLSKPNACIRDCSVAL 174 (231)
Q Consensus 152 ~la~~~~~~~~~~~Ai~~~~~al 174 (231)
.+-..|.+.|++++|...|++..
T Consensus 8 ~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 8 TLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 33333333444444444443333
No 466
>KOG3616|consensus
Probab=52.74 E-value=58 Score=31.10 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=10.3
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q psy13481 187 RGRAYRLLGKWEEAAVDLRN 206 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~ 206 (231)
.+.-|...|+|+-|...|..
T Consensus 771 iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHHHhccchhHHHHHHHHHh
Confidence 44445555555555554443
No 467
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=52.64 E-value=31 Score=17.53 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNA 207 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~a 207 (231)
|..+-.++...|+++.|...|..-
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444455555566666665555543
No 468
>PF13934 ELYS: Nuclear pore complex assembly
Probab=52.47 E-value=1.2e+02 Score=24.23 Aligned_cols=90 Identities=22% Similarity=0.113 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~ 193 (231)
......|..++..++|++|++.+... ... ......+..++...|++..|+.+++ +..-...+..+...+..+ ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p-s~~---~~~~~~Il~~L~~~~~~~lAL~y~~-~~~p~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP-SLI---PWFPDKILQALLRRGDPKLALRYLR-AVGPPLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC-CCC---cccHHHHHHHHHHCCChhHHHHHHH-hcCCCCCCHHHHHHHHHH-HH
Confidence 44566788888899999999988433 222 2334456777777899998888874 344455566555544444 66
Q ss_pred cCCHHHHHHHHHHHHh
Q psy13481 194 LGKWEEAAVDLRNACK 209 (231)
Q Consensus 194 ~g~~~~A~~~~~~al~ 209 (231)
.+...+|..+-+....
T Consensus 153 ~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPD 168 (226)
T ss_pred cCCHHHHHHHHHhCch
Confidence 6788888776665543
No 469
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=51.10 E-value=40 Score=30.78 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy13481 128 KFEDAVNAYSEAIKL-----NPSSALLYAKRGQSYLQLSKPNACIRDCSVAL 174 (231)
Q Consensus 128 ~~~~Ai~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al 174 (231)
.-..++.+|.+||.. +....-.|..+|-.|++.++|.+|+..+-.|-
T Consensus 294 ~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 294 GRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp TS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 345678999999976 33345667788999999999999999887664
No 470
>KOG4014|consensus
Probab=50.48 E-value=1.2e+02 Score=23.78 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhhC
Q psy13481 126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS-------KPNACIRDCSVALKIN 177 (231)
Q Consensus 126 ~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-------~~~~Ai~~~~~al~~~ 177 (231)
.++...|++.|..+-. -+++.+..++|.++..-. +..+|.+++.++.+++
T Consensus 86 ~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~ 142 (248)
T KOG4014|consen 86 DASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE 142 (248)
T ss_pred ccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC
Confidence 4577788888877654 456777777777775433 2567788888887775
No 471
>KOG0276|consensus
Probab=50.24 E-value=1e+02 Score=28.64 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
.+....|..+|...++.+++..|.++|.++-..
T Consensus 663 ~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 663 ANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 344678999999999999999999999998654
No 472
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=50.20 E-value=83 Score=23.00 Aligned_cols=44 Identities=14% Similarity=0.025 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSY 157 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~ 157 (231)
+.++..-..++.+-+.+.|..+|.++++.+|++..++..+-..+
T Consensus 77 EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 77 EALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 44555556677778889999999999999999888776655444
No 473
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=49.03 E-value=27 Score=30.44 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy13481 128 KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162 (231)
Q Consensus 128 ~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (231)
-...|+.++++|.. .+.+..|.++|.+++.+|+
T Consensus 333 l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 333 LIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 34567777777765 4678899999999999997
No 474
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=48.85 E-value=54 Score=22.47 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIK 141 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~ 141 (231)
..++..++..|....+.|+|++|...++++=+
T Consensus 12 aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 12 AGNARSKALEALKAAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44578888899999999999999999888744
No 475
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.62 E-value=1.8e+02 Score=25.23 Aligned_cols=63 Identities=21% Similarity=0.039 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA--AYKFR--GRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~--~~~~l--g~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
....++.-++..++|..|...++.....-|.+.. .+..+ |.-+...-++.+|.+.++..+...
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 4556788899999999999999999986344333 44444 445567778999999999988753
No 476
>KOG2997|consensus
Probab=48.54 E-value=43 Score=28.40 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYA 151 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~ 151 (231)
...|..++..|...-+.|..-+|+..|+.|+++.|+.-..+.
T Consensus 16 ~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 16 AKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 345888999999999999999999999999999997655555
No 477
>KOG3807|consensus
Probab=48.42 E-value=1.8e+02 Score=25.12 Aligned_cols=49 Identities=20% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHH
Q psy13481 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNAC 166 (231)
Q Consensus 118 ~~a~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A 166 (231)
.+|+...+.|+..+|+..++...+-.|-. ...+-|+-.+++.+.-|...
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADv 330 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADV 330 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666677777777777666665522 23344555555555544443
No 478
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=47.72 E-value=30 Score=19.17 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=17.1
Q ss_pred HHHHH-HHHHhhCCCCCChhhhhhHHHHHHHc
Q psy13481 11 KLQLF-LGAVKKNPAIFYLPELKFFKDFVESY 41 (231)
Q Consensus 11 ~~~~~-~~~~~~~p~~l~~~~~~~~~~~~~~~ 41 (231)
-|+.| .++|+.+|+.+ +.|..+|...+
T Consensus 6 lL~~~~~~vl~~qP~Di----~~F~a~yF~~L 33 (38)
T PF02197_consen 6 LLKEFTREVLREQPDDI----LQFAADYFEKL 33 (38)
T ss_dssp HHHHHHHHHHHH--S-H----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcH----HHHHHHHHHHH
Confidence 34555 67899999977 78888887543
No 479
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=47.65 E-value=51 Score=22.72 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIK 141 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~ 141 (231)
..++..++..|....+.|+|++|...+.++=+
T Consensus 14 aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 14 AGDARSKALEALKAAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44577888899999999999999999888744
No 480
>KOG1538|consensus
Probab=47.61 E-value=41 Score=31.50 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=42.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q psy13481 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVT 224 (231)
Q Consensus 154 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~ 224 (231)
-..+...+++.+|....++--+.- ..+|+..|..+....++++|.++|-+|=+ ..++...++++.
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAGr---~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAGR---QREAVQVLEQLT 844 (1081)
T ss_pred hhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhcc---hHHHHHHHHHhh
Confidence 445566667777766654433333 34778888999999999999998887733 233455555443
No 481
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=47.54 E-value=1.7e+02 Score=24.71 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~ 193 (231)
..|+..-..+...++|++-..+.. . ..++-.|--...++++.|+..+|..+..+ -+. -.+...|..
T Consensus 209 rfw~lki~aLa~~~~w~eL~~fa~-s----kKsPIGyepFv~~~~~~~~~~eA~~yI~k----~~~-----~~rv~~y~~ 274 (319)
T PF04840_consen 209 RFWWLKIKALAENKDWDELEKFAK-S----KKSPIGYEPFVEACLKYGNKKEASKYIPK----IPD-----EERVEMYLK 274 (319)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHh-C----CCCCCChHHHHHHHHHCCCHHHHHHHHHh----CCh-----HHHHHHHHH
Confidence 455666677777788876544322 1 23445555566666777888888777766 111 346667788
Q ss_pred cCCHHHHHHH
Q psy13481 194 LGKWEEAAVD 203 (231)
Q Consensus 194 ~g~~~~A~~~ 203 (231)
.|+|.+|...
T Consensus 275 ~~~~~~A~~~ 284 (319)
T PF04840_consen 275 CGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHH
Confidence 8888888764
No 482
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.18 E-value=1.7e+02 Score=25.15 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481 114 NEKKREAIHAYNDGKFE-DAVNAYSEAIKLNPS---SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~-~Ai~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~ 181 (231)
..-+.....+...|-.. +....+...|..-|+ .+.+|..+|.+.-..|.++..|..|++|+.....-.
T Consensus 103 n~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPi 174 (353)
T PF15297_consen 103 NKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPI 174 (353)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChH
Confidence 33344455566777665 677788988888775 478999999999999999999999999999876533
No 483
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=47.15 E-value=52 Score=22.91 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIK 141 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~ 141 (231)
..++...+..|....+.|+|++|...+.++=+
T Consensus 17 aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 17 SGNARTEVHEAFAAMREGNFDLAEQKLNQSNE 48 (104)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44577888889999999999999999988754
No 484
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=47.02 E-value=56 Score=22.32 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIK 141 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~ 141 (231)
..++..++..|....+.|+|++|...+.++-+
T Consensus 11 aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~ 42 (96)
T PF02255_consen 11 AGDARSLAMEALKAAREGDFEEAEELLKEADE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888899999999999999999988744
No 485
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=46.85 E-value=55 Score=21.02 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=10.1
Q ss_pred HHcCChHHHHHHHHHHHh
Q psy13481 158 LQLSKPNACIRDCSVALK 175 (231)
Q Consensus 158 ~~~~~~~~Ai~~~~~al~ 175 (231)
-..|+|.+|+..|..+++
T Consensus 17 D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 17 DNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 345666666666555554
No 486
>KOG4151|consensus
Probab=46.14 E-value=42 Score=31.75 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAY--NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~--~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
++...+......+..++ ..++|..++.--+-++...|....++..++.+|..+++++-|+++..-.....|.+..+.-
T Consensus 86 ~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 86 DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 44444555555555544 5689999999999999999999999999999999999999999999888999999855433
No 487
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=46.05 E-value=1.8e+02 Score=24.56 Aligned_cols=103 Identities=11% Similarity=0.002 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH-
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP------SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA- 182 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~- 182 (231)
...+.++.+.|.-|.+-++.+.+.+...+.++..- +..-.-.++|.+|-.+.=..+.++..+-.++...++-.
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 44578899999999999999999988887776422 12334456777776666667788888888887755432
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 183 --AYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 183 --~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
.-...|.-+....++.+|...+...+.-..
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 223456777777889999888887775543
No 488
>KOG0889|consensus
Probab=45.61 E-value=2.9e+02 Score=31.42 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHhcCCCHHHHH
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL----GK----WEEAAVDLRNACKIDFDEQADE 218 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~----g~----~~~A~~~~~~al~l~p~~~~~~ 218 (231)
+..+..+|..+.++|++++|=..|..|++++-.-+++|...|.-+... +. -..|+.+|-+|....-+..+..
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk 2891 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARK 2891 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHH
Confidence 667778899999999999999999999999988889998888764332 11 2346777777777765554455
Q ss_pred HHHhh
Q psy13481 219 WLKEV 223 (231)
Q Consensus 219 ~l~~~ 223 (231)
.+.++
T Consensus 2892 ~iakv 2896 (3550)
T KOG0889|consen 2892 LIAKV 2896 (3550)
T ss_pred HHHHH
Confidence 54444
No 489
>KOG4563|consensus
Probab=45.30 E-value=49 Score=28.58 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481 151 AKRGQSYLQLSKPNACIRDCSVALKINP--------DSAAAYKFRGRAYRLLGKWEEAAVDLR 205 (231)
Q Consensus 151 ~~la~~~~~~~~~~~Ai~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~ 205 (231)
...|.-++.+++|..|...|..|..+.. .+..+++.+|.+++.+++.+..+-.+.
T Consensus 45 v~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~na 107 (400)
T KOG4563|consen 45 VQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNA 107 (400)
T ss_pred HHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3457777888999999999998887652 356788999999999998887765443
No 490
>KOG4459|consensus
Probab=45.16 E-value=1.1e+02 Score=27.25 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH--------------------HHcCC---hHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSY--------------------LQLSK---PNACI 167 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~--------------------~~~~~---~~~Ai 167 (231)
....+.-|...+..++|.+++..+.++|+..--. ..+. .+..|- ..-|. ...++
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~-Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl 109 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAF-CRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACL 109 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHH-HHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999762210 0000 011111 00111 12223
Q ss_pred HHHHHHHhhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q psy13481 168 RDCSVALKINPDS----------AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLK 221 (231)
Q Consensus 168 ~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~ 221 (231)
..|.+.+-..+.+ -..|..|-.+|+..|++..|+..-...+--+|++. +...+.
T Consensus 110 ~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ld 174 (471)
T KOG4459|consen 110 RRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLD 174 (471)
T ss_pred HHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHH
Confidence 3333322222322 13677788999999999999999998888999865 444333
No 491
>KOG2114|consensus
Probab=45.11 E-value=1.6e+02 Score=28.54 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
.+..+...|..++.+|+|++|...|-+.|..
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3456667788888888888888888888764
No 492
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=45.00 E-value=7.2 Score=35.56 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHH--HHhhCCC-CHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAI--KLNPSS-ALLYAKRGQSYLQLSKPNACIRDCSV--ALKINPD-SAAA 183 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al--~~~p~~-~~~~~~la~~~~~~~~~~~Ai~~~~~--al~~~p~-~~~~ 183 (231)
......+...+..+...|++..|...+.+.- .+.+.. .......|.+....|++..|+..+.. ...+-+. ....
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 4445666777888999999999999999776 334432 44555668899999999999999874 1111111 2335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
+..++.++...|++-+|...+-..-.+-+
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 56678899999999998887766655544
No 493
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.87 E-value=71 Score=24.90 Aligned_cols=50 Identities=6% Similarity=-0.139 Sum_probs=38.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy13481 153 RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVD 203 (231)
Q Consensus 153 la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 203 (231)
.-.++.+.|.|++|.+.+++... +|++......|..+-.....+..-+..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqn 166 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQN 166 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHh
Confidence 35677899999999999999999 888877776677666666655554443
No 494
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=44.61 E-value=83 Score=22.00 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=7.2
Q ss_pred HHHHHcCCHHHHHHHH
Q psy13481 121 IHAYNDGKFEDAVNAY 136 (231)
Q Consensus 121 ~~~~~~~~~~~Ai~~~ 136 (231)
..++++|+|++|..+.
T Consensus 47 sSLmNrG~Yq~Al~l~ 62 (115)
T TIGR02508 47 SSLMNRGDYQSALQLG 62 (115)
T ss_pred HHHHccchHHHHHHhc
Confidence 3444444444444443
No 495
>KOG2422|consensus
Probab=44.55 E-value=2.6e+02 Score=26.00 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCCHH---HHHHHHHHHHHcCC
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL---------------------NPSSAL---LYAKRGQSYLQLSK 162 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~---------------------~p~~~~---~~~~la~~~~~~~~ 162 (231)
...|.+...+.+.+.....+|+.+-|-+...++|=. .|.+-. +++..-..+.+.|-
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 344677888888898888999988887777777621 222222 23333455567888
Q ss_pred hHHHHHHHHHHHhhCCC-CHHHHHHH
Q psy13481 163 PNACIRDCSVALKINPD-SAAAYKFR 187 (231)
Q Consensus 163 ~~~Ai~~~~~al~~~p~-~~~~~~~l 187 (231)
+.-|.++|.-.+.++|. ++-+...+
T Consensus 358 ~rTA~E~cKlllsLdp~eDPl~~l~~ 383 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDPLGILYL 383 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCchhHHHH
Confidence 99999999999999998 76544333
No 496
>KOG0567|consensus
Probab=44.35 E-value=1.8e+02 Score=24.06 Aligned_cols=87 Identities=18% Similarity=0.136 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy13481 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKW 197 (231)
Q Consensus 118 ~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 197 (231)
.++..+.++---++|+..+-..+... ++-+....|.++-+++. ..|+..+.+.+.....++.+.+.-+.++...++
T Consensus 174 y~amF~LRn~g~EeaI~al~~~l~~~--SalfrhEvAfVfGQl~s-~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~- 249 (289)
T KOG0567|consen 174 YRAMFYLRNIGTEEAINALIDGLADD--SALFRHEVAFVFGQLQS-PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD- 249 (289)
T ss_pred HhhhhHhhccCcHHHHHHHHHhcccc--hHHHHHHHHHHHhhccc-hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-
Confidence 36666666666699999999887765 67777777888877765 688999999999999999999999999888887
Q ss_pred HHHHHHHHHHH
Q psy13481 198 EEAAVDLRNAC 208 (231)
Q Consensus 198 ~~A~~~~~~al 208 (231)
++++..+++.+
T Consensus 250 e~~~~vL~e~~ 260 (289)
T KOG0567|consen 250 EDCVEVLKEYL 260 (289)
T ss_pred HHHHHHHHHHc
Confidence 56666666554
No 497
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.25 E-value=1.8e+02 Score=23.80 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=22.7
Q ss_pred hCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc
Q psy13481 176 INPDSAAAYKFRGRA-YRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 176 ~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~l 210 (231)
-.|.....+..++.. |..+|+...|...+...++.
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 345556666666664 67778888888877666654
No 498
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.97 E-value=1.2e+02 Score=21.84 Aligned_cols=55 Identities=9% Similarity=0.028 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy13481 146 SALLYAKRGQSYLQLSKPNACIRDCSVALKI--NPDSAAAYKFRGRAYRLLGKWEEAAVDLRN 206 (231)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 206 (231)
...+|...+... ++ +...|...... .-..+..|-..|..+...|++.+|.+.|+.
T Consensus 68 yLkiWi~ya~~~---~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 68 YLKIWLKYADNC---DE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 345565556532 33 44555554443 345666777888899999999999998874
No 499
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=43.81 E-value=1.4e+02 Score=22.39 Aligned_cols=98 Identities=21% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCH--------------------------------HHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL-------NPSSA--------------------------------LLYAK 152 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-------~p~~~--------------------------------~~~~~ 152 (231)
.+......|......|+.++|+..+.++... +|... .....
T Consensus 1 ~A~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~ 80 (155)
T PF10938_consen 1 RAMRDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIK 80 (155)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHH
Q ss_pred HHHHHHHcCChHHHHHHHHHH-HhhC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 153 RGQSYLQLSKPNACIRDCSVA-LKIN------P-DSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 153 la~~~~~~~~~~~Ai~~~~~a-l~~~------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
.+.-+++.|+...|...++-+ .+++ | .....-...+..+...|++.+|-..+..++.
T Consensus 81 ~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 81 TANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
No 500
>KOG3677|consensus
Probab=43.68 E-value=30 Score=30.39 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=39.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 152 KRGQSYLQLSKPNACIRDCSVALKINPDSAA-------AYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 152 ~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~-------~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
++-.++.-+|+|.. -.+.++++|.... +-|..|.+|..+++|.+|++.|...+-.
T Consensus 240 GLlR~H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLly 301 (525)
T KOG3677|consen 240 GLLRMHILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLY 301 (525)
T ss_pred HHHHHHHHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677888554 3455677765322 2377999999999999999998877643
Done!