Query psy13481
Match_columns 231
No_of_seqs 291 out of 2073
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 20:29:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.9 2.6E-22 9E-27 145.4 16.8 116 109-224 9-125 (126)
2 3gyz_A Chaperone protein IPGC; 99.9 3.5E-21 1.2E-25 144.0 16.6 121 104-224 27-147 (151)
3 4gcn_A Protein STI-1; structur 99.9 2.1E-20 7.1E-25 135.5 15.2 116 108-223 3-125 (127)
4 3upv_A Heat shock protein STI1 99.8 1.5E-19 5E-24 129.9 16.0 117 111-227 2-125 (126)
5 2hr2_A Hypothetical protein; a 99.8 1.1E-19 3.6E-24 136.0 13.2 106 109-214 7-135 (159)
6 2vgx_A Chaperone SYCD; alterna 99.8 1.7E-19 6E-24 134.0 14.2 110 105-214 13-122 (148)
7 3rkv_A Putative peptidylprolyl 99.8 2.7E-19 9.3E-24 134.2 14.0 122 108-229 6-147 (162)
8 2xcb_A PCRH, regulatory protei 99.8 2.3E-19 7.9E-24 132.0 13.1 120 107-226 12-132 (142)
9 4ga2_A E3 SUMO-protein ligase 99.8 3.9E-19 1.3E-23 132.3 13.7 120 106-225 24-145 (150)
10 3sz7_A HSC70 cochaperone (SGT) 99.8 1.1E-18 3.6E-23 131.2 13.2 107 109-215 7-113 (164)
11 1hxi_A PEX5, peroxisome target 99.8 9.9E-18 3.4E-22 120.3 13.0 101 115-215 19-119 (121)
12 3q49_B STIP1 homology and U bo 99.8 2.8E-17 9.5E-22 118.9 14.2 116 112-227 8-129 (137)
13 2h6f_A Protein farnesyltransfe 99.7 3.2E-17 1.1E-21 140.1 14.9 118 109-226 93-212 (382)
14 2vyi_A SGTA protein; chaperone 99.7 2.9E-16 9.9E-21 111.5 17.2 123 107-229 6-129 (131)
15 1p5q_A FKBP52, FK506-binding p 99.7 1.2E-16 4.1E-21 134.1 17.6 122 106-227 140-277 (336)
16 1elw_A TPR1-domain of HOP; HOP 99.7 2.2E-16 7.4E-21 110.3 16.1 112 112-223 3-115 (118)
17 3urz_A Uncharacterized protein 99.7 1.3E-16 4.3E-21 124.8 16.3 118 107-224 32-200 (208)
18 1elr_A TPR2A-domain of HOP; HO 99.7 1.1E-16 3.7E-21 113.9 14.6 119 112-230 3-128 (131)
19 2fbn_A 70 kDa peptidylprolyl i 99.7 2.2E-16 7.4E-21 122.1 17.1 122 107-228 32-170 (198)
20 4gyw_A UDP-N-acetylglucosamine 99.7 6.5E-17 2.2E-21 148.4 16.3 104 110-213 6-109 (723)
21 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 1.6E-16 5.6E-21 138.7 17.3 122 107-228 262-399 (457)
22 3urz_A Uncharacterized protein 99.7 1.2E-16 4.3E-21 124.8 14.3 109 113-221 4-129 (208)
23 2lni_A Stress-induced-phosphop 99.7 2.7E-16 9.4E-21 112.4 14.5 116 111-226 14-130 (133)
24 2xev_A YBGF; tetratricopeptide 99.7 5.1E-16 1.7E-20 111.1 15.5 102 114-215 3-110 (129)
25 2pl2_A Hypothetical conserved 99.7 1.6E-16 5.5E-21 125.0 13.3 102 110-211 36-148 (217)
26 2dba_A Smooth muscle cell asso 99.7 5.8E-16 2E-20 112.8 14.8 112 113-224 28-143 (148)
27 1a17_A Serine/threonine protei 99.7 2.3E-15 8E-20 111.7 17.7 109 107-215 7-115 (166)
28 1zu2_A Mitochondrial import re 99.7 6.5E-17 2.2E-21 120.7 9.0 102 125-226 14-136 (158)
29 4gyw_A UDP-N-acetylglucosamine 99.7 2.9E-16 1E-20 144.1 15.2 121 107-227 37-158 (723)
30 2h6f_A Protein farnesyltransfe 99.7 1.7E-16 5.7E-21 135.6 12.2 120 107-226 125-246 (382)
31 4ga2_A E3 SUMO-protein ligase 99.7 2.5E-17 8.6E-22 122.4 6.1 109 119-227 3-112 (150)
32 3vtx_A MAMA; tetratricopeptide 99.7 1.4E-15 4.6E-20 115.7 14.9 103 113-215 73-175 (184)
33 1ihg_A Cyclophilin 40; ppiase 99.7 8.1E-16 2.8E-20 130.9 14.9 122 107-228 217-355 (370)
34 2pl2_A Hypothetical conserved 99.7 8.9E-16 3E-20 120.7 13.7 118 107-225 67-196 (217)
35 3vtx_A MAMA; tetratricopeptide 99.7 3.2E-15 1.1E-19 113.6 15.9 114 113-226 5-153 (184)
36 2e2e_A Formate-dependent nitri 99.7 7.3E-16 2.5E-20 116.7 11.8 109 107-215 38-149 (177)
37 1na0_A Designed protein CTPR3; 99.7 9.8E-15 3.3E-19 102.6 16.8 112 113-224 9-121 (125)
38 2kck_A TPR repeat; tetratricop 99.7 3.2E-16 1.1E-20 108.5 8.7 102 113-214 6-110 (112)
39 2if4_A ATFKBP42; FKBP-like, al 99.7 4.2E-16 1.4E-20 131.0 10.5 117 107-223 173-307 (338)
40 4i17_A Hypothetical protein; T 99.6 5.3E-15 1.8E-19 116.3 15.7 103 113-215 7-110 (228)
41 2c2l_A CHIP, carboxy terminus 99.6 1.6E-15 5.5E-20 124.1 12.8 102 113-214 4-105 (281)
42 3k9i_A BH0479 protein; putativ 99.6 4.4E-16 1.5E-20 110.4 7.0 91 125-215 2-95 (117)
43 4i17_A Hypothetical protein; T 99.6 1.3E-14 4.4E-19 114.1 15.9 101 113-213 42-149 (228)
44 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.5E-14 5E-19 112.2 15.2 102 113-214 37-154 (213)
45 3uq3_A Heat shock protein STI1 99.6 2.8E-14 9.5E-19 112.9 16.6 115 109-223 135-256 (258)
46 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.3E-14 1.1E-18 113.8 17.0 107 109-215 39-145 (275)
47 3gyz_A Chaperone protein IPGC; 99.6 1.6E-15 5.5E-20 113.1 4.9 97 132-228 21-118 (151)
48 2kat_A Uncharacterized protein 99.6 1.8E-14 6.2E-19 101.5 10.1 85 130-214 2-86 (115)
49 2l6j_A TPR repeat-containing p 99.6 3.7E-15 1.3E-19 103.5 6.3 95 112-206 3-103 (111)
50 4eqf_A PEX5-related protein; a 99.6 5.8E-14 2E-18 117.5 14.0 102 112-213 212-313 (365)
51 1wao_1 Serine/threonine protei 99.6 8.4E-15 2.9E-19 128.5 9.1 113 111-223 4-117 (477)
52 2vsy_A XCC0866; transferase, g 99.6 6.1E-14 2.1E-18 125.0 14.6 119 107-225 17-136 (568)
53 2fo7_A Synthetic consensus TPR 99.5 2.6E-13 8.8E-18 96.2 14.8 99 115-213 3-101 (136)
54 3qky_A Outer membrane assembly 99.5 8.9E-14 3E-18 111.6 13.4 104 112-215 14-131 (261)
55 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-13 4.6E-18 108.2 14.2 115 109-223 53-168 (243)
56 3as5_A MAMA; tetratricopeptide 99.5 5.2E-13 1.8E-17 100.0 16.3 102 113-214 42-143 (186)
57 1fch_A Peroxisomal targeting s 99.5 2E-13 6.8E-18 113.9 15.2 117 112-228 216-344 (368)
58 2fo7_A Synthetic consensus TPR 99.5 3.1E-13 1.1E-17 95.8 14.0 101 113-213 35-135 (136)
59 4gco_A Protein STI-1; structur 99.5 4.4E-14 1.5E-18 101.8 9.5 91 138-228 4-95 (126)
60 3ieg_A DNAJ homolog subfamily 99.5 4.1E-13 1.4E-17 110.9 16.3 114 116-229 237-355 (359)
61 1hh8_A P67PHOX, NCF-2, neutrop 99.5 2.1E-13 7.1E-18 105.6 13.7 100 112-214 5-104 (213)
62 2y4t_A DNAJ homolog subfamily 99.5 3.1E-13 1.1E-17 115.9 15.9 112 104-215 17-128 (450)
63 4abn_A Tetratricopeptide repea 99.5 6.8E-14 2.3E-18 122.5 12.0 115 113-227 170-305 (474)
64 2pzi_A Probable serine/threoni 99.5 3.1E-14 1.1E-18 130.0 10.1 101 113-214 467-567 (681)
65 3uq3_A Heat shock protein STI1 99.5 3.5E-13 1.2E-17 106.5 15.0 115 113-227 79-220 (258)
66 2vq2_A PILW, putative fimbrial 99.5 7.2E-13 2.5E-17 102.5 16.2 98 112-209 7-105 (225)
67 3ieg_A DNAJ homolog subfamily 99.5 3.8E-13 1.3E-17 111.1 15.4 101 112-212 2-102 (359)
68 2pzi_A Probable serine/threoni 99.5 2.2E-14 7.6E-19 131.0 8.5 117 110-227 430-547 (681)
69 4eqf_A PEX5-related protein; a 99.5 2.3E-13 8E-18 113.8 13.8 103 113-215 65-167 (365)
70 3qou_A Protein YBBN; thioredox 99.5 2.9E-13 1E-17 110.8 13.9 119 110-228 114-269 (287)
71 3as5_A MAMA; tetratricopeptide 99.5 2.2E-13 7.6E-18 102.1 12.2 105 111-215 74-178 (186)
72 2yhc_A BAMD, UPF0169 lipoprote 99.5 2.7E-13 9.3E-18 106.8 12.9 103 113-215 4-130 (225)
73 1w3b_A UDP-N-acetylglucosamine 99.5 3.9E-13 1.3E-17 113.5 14.7 105 110-214 234-338 (388)
74 1na3_A Designed protein CTPR2; 99.5 6E-13 2.1E-17 88.9 12.6 85 111-195 7-91 (91)
75 2q7f_A YRRB protein; TPR, prot 99.5 1.1E-12 3.6E-17 103.1 16.0 113 112-224 90-203 (243)
76 3cv0_A Peroxisome targeting si 99.5 6.9E-13 2.4E-17 108.4 15.2 103 111-213 170-272 (327)
77 3qky_A Outer membrane assembly 99.5 1.3E-13 4.6E-18 110.6 10.5 118 111-228 87-246 (261)
78 1w3b_A UDP-N-acetylglucosamine 99.5 5.3E-13 1.8E-17 112.7 14.5 105 110-214 166-270 (388)
79 2vgx_A Chaperone SYCD; alterna 99.5 4.9E-14 1.7E-18 104.4 6.9 96 131-226 5-101 (148)
80 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-12 4.1E-17 103.7 15.4 105 110-214 68-174 (252)
81 2gw1_A Mitochondrial precursor 99.5 8.3E-13 2.8E-17 114.7 15.4 103 110-213 3-105 (514)
82 3u4t_A TPR repeat-containing p 99.5 6.7E-13 2.3E-17 106.2 13.7 112 113-224 74-186 (272)
83 4abn_A Tetratricopeptide repea 99.5 2.3E-13 7.8E-18 119.2 11.7 112 112-224 101-223 (474)
84 1fch_A Peroxisomal targeting s 99.5 1.2E-12 4.1E-17 109.1 15.0 102 113-214 64-165 (368)
85 3ma5_A Tetratricopeptide repea 99.5 1.7E-13 5.8E-18 94.5 8.1 73 142-214 2-74 (100)
86 3mkr_A Coatomer subunit epsilo 99.5 1.2E-12 4E-17 107.6 14.5 95 124-218 177-272 (291)
87 2vq2_A PILW, putative fimbrial 99.5 1.6E-12 5.6E-17 100.5 14.3 101 113-213 42-145 (225)
88 2r5s_A Uncharacterized protein 99.5 8E-13 2.7E-17 100.1 12.2 124 104-228 31-158 (176)
89 3hym_B Cell division cycle pro 99.5 4.9E-13 1.7E-17 109.5 11.8 113 112-224 192-314 (330)
90 3fp2_A TPR repeat-containing p 99.5 6.3E-13 2.2E-17 116.3 13.1 106 108-214 20-125 (537)
91 3u4t_A TPR repeat-containing p 99.5 4E-13 1.4E-17 107.6 10.8 102 112-214 36-141 (272)
92 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.3E-12 4.4E-17 102.9 13.0 115 113-227 41-197 (225)
93 1p5q_A FKBP52, FK506-binding p 99.4 1.8E-12 6E-17 108.7 14.6 99 112-210 195-294 (336)
94 3hym_B Cell division cycle pro 99.4 1.3E-12 4.6E-17 106.8 13.6 114 110-223 87-202 (330)
95 2ho1_A Type 4 fimbrial biogene 99.4 4E-12 1.4E-16 100.6 15.8 102 113-214 141-242 (252)
96 2y4t_A DNAJ homolog subfamily 99.4 4.6E-12 1.6E-16 108.5 16.6 107 117-223 261-372 (450)
97 1a17_A Serine/threonine protei 99.4 2E-12 6.7E-17 95.7 12.2 102 110-211 44-147 (166)
98 2kc7_A BFR218_protein; tetratr 99.4 3.1E-13 1.1E-17 92.3 6.8 90 117-214 4-94 (99)
99 2e2e_A Formate-dependent nitri 99.4 7.5E-13 2.6E-17 99.9 9.4 103 123-225 20-126 (177)
100 3cv0_A Peroxisome targeting si 99.4 5.2E-12 1.8E-16 103.2 15.1 102 113-214 21-122 (327)
101 1xnf_A Lipoprotein NLPI; TPR, 99.4 6.6E-12 2.2E-16 100.3 15.3 103 112-214 76-248 (275)
102 2vsy_A XCC0866; transferase, g 99.4 2.7E-12 9.1E-17 114.4 14.0 103 112-214 56-161 (568)
103 1qqe_A Vesicular transport pro 99.4 1.6E-12 5.6E-17 106.4 11.6 103 112-214 116-232 (292)
104 2xcb_A PCRH, regulatory protei 99.4 5.3E-13 1.8E-17 97.6 7.6 93 134-226 5-98 (142)
105 3mkr_A Coatomer subunit epsilo 99.4 8.1E-12 2.8E-16 102.5 15.5 111 111-221 128-241 (291)
106 1qqe_A Vesicular transport pro 99.4 3E-12 1E-16 104.9 11.7 104 111-214 75-191 (292)
107 2xpi_A Anaphase-promoting comp 99.4 1.4E-11 4.9E-16 109.3 16.0 113 112-224 474-594 (597)
108 4gcn_A Protein STI-1; structur 99.3 4.4E-12 1.5E-16 91.2 9.5 69 146-214 7-75 (127)
109 3k9i_A BH0479 protein; putativ 99.3 1.4E-11 4.7E-16 87.0 11.8 86 109-194 23-108 (117)
110 3fp2_A TPR repeat-containing p 99.3 8.3E-12 2.9E-16 109.2 12.7 100 113-213 243-342 (537)
111 3edt_B KLC 2, kinesin light ch 99.3 8.5E-12 2.9E-16 99.5 11.4 102 109-210 39-156 (283)
112 2vyi_A SGTA protein; chaperone 99.3 1.1E-11 3.6E-16 87.5 10.5 88 110-197 43-130 (131)
113 1wao_1 Serine/threonine protei 99.3 4.8E-13 1.6E-17 117.4 3.9 107 107-213 34-153 (477)
114 3rkv_A Putative peptidylprolyl 99.3 1E-11 3.5E-16 92.5 10.1 90 109-198 59-149 (162)
115 4g1t_A Interferon-induced prot 99.3 3.9E-11 1.3E-15 103.5 15.1 103 113-215 51-172 (472)
116 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.7E-11 5.8E-16 106.9 12.7 91 113-203 317-407 (457)
117 2xpi_A Anaphase-promoting comp 99.3 2.7E-11 9.3E-16 107.5 14.2 105 111-215 371-475 (597)
118 2r5s_A Uncharacterized protein 99.3 2.2E-12 7.5E-17 97.6 6.2 112 113-225 6-119 (176)
119 2if4_A ATFKBP42; FKBP-like, al 99.3 2.8E-12 9.7E-17 107.5 7.1 102 114-215 231-333 (338)
120 2fbn_A 70 kDa peptidylprolyl i 99.3 1.8E-11 6.3E-16 94.1 11.2 97 113-209 88-185 (198)
121 3edt_B KLC 2, kinesin light ch 99.3 1.2E-11 3.9E-16 98.7 10.3 104 109-212 81-200 (283)
122 2l6j_A TPR repeat-containing p 99.3 4.1E-11 1.4E-15 82.7 11.7 69 146-214 3-71 (111)
123 3upv_A Heat shock protein STI1 99.3 2.1E-11 7.1E-16 86.8 10.3 86 109-194 34-125 (126)
124 2ond_A Cleavage stimulation fa 99.3 2.5E-11 8.5E-16 100.0 12.0 105 109-213 46-166 (308)
125 2gw1_A Mitochondrial precursor 99.3 3.2E-11 1.1E-15 104.6 13.2 105 111-215 370-483 (514)
126 2lni_A Stress-induced-phosphop 99.3 3.3E-11 1.1E-15 85.5 10.7 86 111-196 48-133 (133)
127 1ouv_A Conserved hypothetical 99.3 1.7E-10 5.8E-15 92.8 16.0 94 114-211 39-144 (273)
128 1na3_A Designed protein CTPR2; 99.3 4.3E-11 1.5E-15 79.6 10.4 80 145-224 7-87 (91)
129 2qfc_A PLCR protein; TPR, HTH, 99.3 1.6E-10 5.6E-15 94.3 15.9 103 111-213 113-228 (293)
130 3sz7_A HSC70 cochaperone (SGT) 99.3 1.8E-11 6.1E-16 91.4 9.3 85 108-192 40-124 (164)
131 2ond_A Cleavage stimulation fa 99.3 3.3E-11 1.1E-15 99.2 11.6 103 112-214 98-202 (308)
132 3nf1_A KLC 1, kinesin light ch 99.3 1.9E-11 6.3E-16 99.1 9.8 104 110-213 150-310 (311)
133 3ma5_A Tetratricopeptide repea 99.3 2.3E-11 7.8E-16 83.7 8.7 86 109-194 3-90 (100)
134 1dce_A Protein (RAB geranylger 99.3 4.6E-11 1.6E-15 106.9 13.0 124 104-227 54-191 (567)
135 3dra_A Protein farnesyltransfe 99.3 7E-11 2.4E-15 97.8 13.0 121 106-226 60-192 (306)
136 1ihg_A Cyclophilin 40; ppiase 99.3 6.4E-11 2.2E-15 100.6 12.9 96 108-203 268-363 (370)
137 3dra_A Protein farnesyltransfe 99.3 6.7E-11 2.3E-15 97.9 12.6 121 108-228 98-234 (306)
138 1zu2_A Mitochondrial import re 99.2 1.1E-11 3.9E-16 92.3 7.0 81 107-187 30-131 (158)
139 2ifu_A Gamma-SNAP; membrane fu 99.2 4.2E-11 1.5E-15 98.7 10.6 101 111-213 114-226 (307)
140 3u3w_A Transcriptional activat 99.2 3.3E-11 1.1E-15 98.4 9.8 100 112-211 154-267 (293)
141 3ro3_A PINS homolog, G-protein 99.2 5.5E-11 1.9E-15 86.7 10.0 102 110-211 6-119 (164)
142 3q49_B STIP1 homology and U bo 99.2 1.2E-10 4.1E-15 83.5 11.6 86 141-226 3-89 (137)
143 1dce_A Protein (RAB geranylger 99.2 3.6E-11 1.2E-15 107.6 10.6 121 107-227 101-239 (567)
144 3nf1_A KLC 1, kinesin light ch 99.2 4.4E-11 1.5E-15 96.9 10.0 106 106-211 20-141 (311)
145 2kck_A TPR repeat; tetratricop 99.2 5.1E-11 1.7E-15 81.8 8.8 86 142-227 1-89 (112)
146 2qfc_A PLCR protein; TPR, HTH, 99.2 7.4E-11 2.5E-15 96.4 11.1 100 112-211 154-267 (293)
147 1na0_A Designed protein CTPR3; 99.2 1.8E-10 6.1E-15 80.4 11.6 84 112-195 42-125 (125)
148 4a1s_A PINS, partner of inscut 99.2 1.1E-10 3.7E-15 98.8 12.4 103 109-211 44-156 (411)
149 1hxi_A PEX5, peroxisome target 99.2 1.3E-10 4.4E-15 82.7 10.8 79 148-226 18-97 (121)
150 2hr2_A Hypothetical protein; a 99.2 2E-11 6.9E-16 91.1 6.6 81 110-190 54-145 (159)
151 3ulq_A Response regulator aspa 99.2 1.1E-10 3.6E-15 98.7 11.8 104 109-212 180-295 (383)
152 3ulq_A Response regulator aspa 99.2 1.3E-10 4.5E-15 98.1 12.2 102 109-210 139-253 (383)
153 4g1t_A Interferon-induced prot 99.2 8.5E-11 2.9E-15 101.4 11.3 107 109-215 243-368 (472)
154 3ro3_A PINS homolog, G-protein 99.2 2E-10 7E-15 83.6 11.3 101 112-212 48-160 (164)
155 3ro2_A PINS homolog, G-protein 99.2 1.3E-10 4.3E-15 94.6 11.1 102 112-213 4-115 (338)
156 3dss_A Geranylgeranyl transfer 99.2 3.4E-10 1.2E-14 94.5 13.5 118 107-224 102-237 (331)
157 3sf4_A G-protein-signaling mod 99.2 1.3E-10 4.6E-15 97.6 10.8 101 113-213 9-119 (406)
158 1elw_A TPR1-domain of HOP; HOP 99.2 3E-10 1E-14 78.5 10.9 81 111-191 36-116 (118)
159 3bee_A Putative YFRE protein; 99.2 3.1E-10 1E-14 77.3 10.6 72 143-214 2-76 (93)
160 3gw4_A Uncharacterized protein 99.2 1.5E-10 5.2E-15 88.3 10.1 99 112-210 25-136 (203)
161 3qou_A Protein YBBN; thioredox 99.2 1.2E-10 4E-15 95.2 9.8 103 107-209 145-283 (287)
162 2ifu_A Gamma-SNAP; membrane fu 99.2 5.7E-11 1.9E-15 97.9 7.9 102 111-213 74-187 (307)
163 2kc7_A BFR218_protein; tetratr 99.2 2.5E-10 8.6E-15 77.5 9.7 66 150-215 3-69 (99)
164 4f3v_A ESX-1 secretion system 99.2 2.7E-10 9.4E-15 92.8 11.5 111 109-220 132-247 (282)
165 3q15_A PSP28, response regulat 99.2 2.8E-10 9.4E-15 96.1 12.0 103 110-212 179-292 (378)
166 1ouv_A Conserved hypothetical 99.2 2.2E-09 7.5E-14 86.2 16.7 95 113-211 74-180 (273)
167 2c2l_A CHIP, carboxy terminus 99.2 4E-11 1.4E-15 97.8 6.4 105 109-215 34-169 (281)
168 3dss_A Geranylgeranyl transfer 99.1 5.8E-10 2E-14 93.1 13.3 119 109-227 60-192 (331)
169 2xev_A YBGF; tetratricopeptide 99.1 1.1E-09 3.9E-14 77.5 13.0 84 113-196 39-125 (129)
170 3q7a_A Farnesyltransferase alp 99.1 3.5E-10 1.2E-14 94.9 11.4 116 109-224 84-211 (349)
171 2dba_A Smooth muscle cell asso 99.1 7.9E-10 2.7E-14 79.8 11.8 82 112-193 64-145 (148)
172 2kat_A Uncharacterized protein 99.1 2.3E-10 7.8E-15 80.1 8.5 85 111-195 17-103 (115)
173 3gw4_A Uncharacterized protein 99.1 2.2E-10 7.5E-15 87.4 9.1 104 109-212 62-178 (203)
174 1pc2_A Mitochondria fission pr 99.1 6.3E-10 2.2E-14 82.0 10.9 100 129-228 14-119 (152)
175 3q7a_A Farnesyltransferase alp 99.1 6.4E-09 2.2E-13 87.2 17.2 109 119-227 60-172 (349)
176 3u3w_A Transcriptional activat 99.1 5.6E-10 1.9E-14 91.1 10.7 100 113-212 115-227 (293)
177 3sf4_A G-protein-signaling mod 99.1 3.8E-10 1.3E-14 94.8 9.6 97 114-210 228-336 (406)
178 3ly7_A Transcriptional activat 99.1 4.3E-09 1.5E-13 88.5 15.5 110 113-223 196-352 (372)
179 3q15_A PSP28, response regulat 99.1 1.5E-09 5.1E-14 91.6 12.8 101 109-209 137-250 (378)
180 4a1s_A PINS, partner of inscut 99.1 2.4E-10 8.1E-15 96.8 7.9 104 110-213 220-335 (411)
181 3rjv_A Putative SEL1 repeat pr 99.1 2E-09 6.7E-14 83.9 12.4 97 112-213 17-121 (212)
182 3rjv_A Putative SEL1 repeat pr 99.1 1.4E-09 4.8E-14 84.8 11.0 110 112-223 84-209 (212)
183 3ro2_A PINS homolog, G-protein 99.0 1E-09 3.5E-14 89.2 10.4 105 109-213 179-295 (338)
184 3n71_A Histone lysine methyltr 99.0 1.2E-09 4E-14 96.1 10.9 98 113-210 309-422 (490)
185 2v5f_A Prolyl 4-hydroxylase su 99.0 9.6E-09 3.3E-13 71.1 11.7 78 113-190 5-89 (104)
186 3qww_A SET and MYND domain-con 99.0 1.7E-09 5.7E-14 93.7 9.4 97 119-215 304-421 (433)
187 1elr_A TPR2A-domain of HOP; HO 99.0 1.4E-09 4.6E-14 76.5 7.1 83 112-195 37-126 (131)
188 2ooe_A Cleavage stimulation fa 99.0 3.9E-09 1.3E-13 93.1 11.4 106 108-213 267-388 (530)
189 2ooe_A Cleavage stimulation fa 98.9 6.5E-09 2.2E-13 91.7 11.4 105 110-214 318-424 (530)
190 3qwp_A SET and MYND domain-con 98.9 7.7E-09 2.6E-13 89.4 10.7 104 112-215 286-410 (429)
191 3n71_A Histone lysine methyltr 98.9 4.3E-09 1.5E-13 92.5 9.0 107 105-211 343-465 (490)
192 1klx_A Cysteine rich protein B 98.9 3.5E-08 1.2E-12 71.7 12.5 91 119-213 31-129 (138)
193 2v5f_A Prolyl 4-hydroxylase su 98.9 2.2E-08 7.5E-13 69.2 10.7 70 146-215 4-80 (104)
194 1hz4_A MALT regulatory protein 98.8 3.4E-08 1.2E-12 82.6 12.4 99 113-211 93-204 (373)
195 1hz4_A MALT regulatory protein 98.8 1.3E-08 4.6E-13 85.1 9.5 102 112-213 52-167 (373)
196 3bee_A Putative YFRE protein; 98.8 1.3E-08 4.4E-13 69.1 7.4 70 112-181 5-77 (93)
197 2xm6_A Protein corresponding t 98.8 5.7E-08 1.9E-12 84.8 13.4 96 113-212 328-434 (490)
198 4f3v_A ESX-1 secretion system 98.8 2.4E-08 8.1E-13 81.4 8.3 97 114-211 103-201 (282)
199 3u64_A Protein TP_0956; tetrat 98.7 9.1E-08 3.1E-12 77.7 11.2 104 110-213 149-272 (301)
200 1pc2_A Mitochondria fission pr 98.7 1.2E-07 4E-12 69.9 9.2 80 112-191 31-115 (152)
201 3e4b_A ALGK; tetratricopeptide 98.7 2E-07 6.7E-12 80.9 12.2 94 115-211 178-281 (452)
202 2xm6_A Protein corresponding t 98.7 1.1E-06 3.9E-11 76.4 16.7 93 114-210 76-180 (490)
203 1nzn_A CGI-135 protein, fissio 98.6 4E-07 1.4E-11 64.8 10.4 103 127-229 15-123 (126)
204 3mv2_B Coatomer subunit epsilo 98.5 2E-06 6.8E-11 70.9 12.9 100 114-213 101-210 (310)
205 3e4b_A ALGK; tetratricopeptide 98.5 1.2E-06 4.1E-11 75.9 11.6 86 117-208 217-314 (452)
206 1klx_A Cysteine rich protein B 98.5 2.1E-06 7.3E-11 62.1 10.8 79 127-211 9-91 (138)
207 3mv2_B Coatomer subunit epsilo 98.4 1.6E-06 5.5E-11 71.4 10.7 101 119-224 182-296 (310)
208 1xi4_A Clathrin heavy chain; a 98.4 2.7E-06 9.1E-11 82.0 12.4 91 119-214 1055-1167(1630)
209 3qwp_A SET and MYND domain-con 98.4 1.1E-06 3.9E-11 75.8 9.2 90 105-194 321-426 (429)
210 3qww_A SET and MYND domain-con 98.4 9.8E-07 3.3E-11 76.3 8.3 80 105-184 332-424 (433)
211 1xi4_A Clathrin heavy chain; a 98.3 8E-06 2.7E-10 78.8 12.5 94 114-215 1196-1314(1630)
212 1b89_A Protein (clathrin heavy 98.3 9.2E-07 3.2E-11 76.2 5.5 88 114-214 123-240 (449)
213 4b4t_Q 26S proteasome regulato 98.3 4.2E-06 1.4E-10 71.0 9.7 98 113-210 135-245 (434)
214 3ffl_A Anaphase-promoting comp 98.2 1.1E-05 3.9E-10 59.8 10.3 94 114-207 21-148 (167)
215 4b4t_Q 26S proteasome regulato 98.2 1E-05 3.6E-10 68.5 11.6 98 114-211 96-205 (434)
216 1nzn_A CGI-135 protein, fissio 98.1 1.7E-05 5.9E-10 56.3 8.6 79 113-191 35-118 (126)
217 1b89_A Protein (clathrin heavy 98.1 4E-05 1.4E-09 66.0 12.3 97 110-211 145-273 (449)
218 3u64_A Protein TP_0956; tetrat 98.1 2.3E-05 8E-10 63.6 10.1 106 109-214 102-237 (301)
219 3o48_A Mitochondria fission 1 98.0 6.2E-05 2.1E-09 53.7 10.1 67 147-213 40-110 (134)
220 3ly7_A Transcriptional activat 98.0 2E-05 6.8E-10 66.3 8.0 72 110-182 274-345 (372)
221 1y8m_A FIS1; mitochondria, unk 98.0 0.00028 9.7E-09 50.9 12.9 84 145-228 37-125 (144)
222 4h7y_A Dual specificity protei 97.9 0.00014 4.6E-09 53.1 10.7 102 112-214 12-127 (161)
223 3o48_A Mitochondria fission 1 97.9 0.00015 5.2E-09 51.7 10.8 79 113-191 40-122 (134)
224 1y8m_A FIS1; mitochondria, unk 97.9 0.00025 8.5E-09 51.2 11.5 79 113-191 39-121 (144)
225 2ff4_A Probable regulatory pro 97.8 0.0021 7.1E-08 54.6 17.0 116 109-224 111-255 (388)
226 4e6h_A MRNA 3'-END-processing 97.7 0.00062 2.1E-08 62.0 13.1 100 114-213 435-536 (679)
227 4e6h_A MRNA 3'-END-processing 97.6 0.00056 1.9E-08 62.3 11.4 81 130-210 326-407 (679)
228 3ffl_A Anaphase-promoting comp 97.4 0.00093 3.2E-08 49.5 8.9 79 112-191 62-165 (167)
229 4gns_B Protein CSD3, chitin bi 96.9 0.0031 1.1E-07 57.8 8.7 80 128-207 300-397 (754)
230 3kae_A CDC27, possible protein 96.8 0.061 2.1E-06 40.1 13.3 94 117-215 37-148 (242)
231 4g26_A Pentatricopeptide repea 96.8 0.064 2.2E-06 46.9 15.9 110 113-223 105-219 (501)
232 4gns_B Protein CSD3, chitin bi 96.6 0.0094 3.2E-07 54.7 9.9 61 113-173 337-397 (754)
233 1ya0_A SMG-7 transcript varian 96.6 0.022 7.5E-07 49.8 11.3 80 114-193 153-232 (497)
234 2uy1_A Cleavage stimulation fa 96.5 0.033 1.1E-06 48.6 12.2 94 113-207 286-380 (493)
235 2uy1_A Cleavage stimulation fa 96.5 0.029 9.8E-07 49.0 11.8 101 113-215 213-354 (493)
236 1ya0_A SMG-7 transcript varian 96.4 0.023 7.9E-07 49.7 10.5 78 149-226 154-232 (497)
237 1zbp_A Hypothetical protein VP 96.2 0.081 2.8E-06 42.3 11.6 62 121-182 5-66 (273)
238 3txn_A 26S proteasome regulato 95.9 0.14 4.7E-06 43.4 12.5 94 118-211 104-211 (394)
239 4h7y_A Dual specificity protei 95.6 0.064 2.2E-06 39.1 7.8 81 113-195 61-141 (161)
240 4g26_A Pentatricopeptide repea 95.5 0.28 9.6E-06 42.8 13.4 96 127-223 84-184 (501)
241 1zbp_A Hypothetical protein VP 95.5 0.073 2.5E-06 42.5 8.6 60 156-215 6-65 (273)
242 2ff4_A Probable regulatory pro 95.3 0.11 3.8E-06 43.8 9.7 63 113-175 171-233 (388)
243 4b4t_P 26S proteasome regulato 95.2 0.56 1.9E-05 40.3 14.0 98 113-210 137-247 (445)
244 4b4t_R RPN7, 26S proteasome re 95.0 0.12 4.1E-06 44.2 9.1 98 114-211 132-238 (429)
245 3mkq_A Coatomer beta'-subunit; 93.9 0.43 1.5E-05 43.3 10.9 45 124-173 663-707 (814)
246 3mkq_B Coatomer subunit alpha; 93.8 0.68 2.3E-05 34.5 9.8 99 121-224 13-142 (177)
247 3spa_A Mtrpol, DNA-directed RN 92.9 2.7 9.4E-05 40.0 14.3 101 113-214 127-236 (1134)
248 4b4t_S RPN3, 26S proteasome re 92.0 0.33 1.1E-05 42.5 6.7 65 147-213 231-302 (523)
249 4fhn_B Nucleoporin NUP120; pro 91.7 0.54 1.9E-05 45.3 8.5 93 115-207 844-964 (1139)
250 3mkq_B Coatomer subunit alpha; 91.3 1.2 4.2E-05 33.1 8.3 55 146-208 7-61 (177)
251 3mkq_A Coatomer beta'-subunit; 90.7 2.6 8.9E-05 38.1 11.7 91 113-214 681-779 (814)
252 1qsa_A Protein (soluble lytic 90.3 1.6 5.4E-05 39.2 9.5 87 122-209 261-347 (618)
253 3kae_A CDC27, possible protein 90.1 4.6 0.00016 30.1 14.4 68 112-179 61-146 (242)
254 2ijq_A Hypothetical protein; s 88.4 4.6 0.00016 29.5 9.2 63 114-176 33-104 (161)
255 2wpv_A GET4, UPF0363 protein Y 87.1 11 0.00037 30.7 12.0 27 179-205 132-158 (312)
256 3esl_A Checkpoint serine/threo 86.9 8.5 0.00029 29.2 10.7 93 134-227 58-163 (202)
257 4b4t_R RPN7, 26S proteasome re 85.0 0.77 2.6E-05 39.2 4.1 65 146-210 130-197 (429)
258 2w2u_A Hypothetical P60 katani 84.8 5.9 0.0002 25.4 7.9 35 108-142 14-48 (83)
259 4b4t_S RPN3, 26S proteasome re 84.4 2.1 7.2E-05 37.4 6.5 67 112-180 230-303 (523)
260 3lpz_A GET4 (YOR164C homolog); 84.3 16 0.00054 30.0 13.7 93 113-205 35-160 (336)
261 3ax2_A Mitochondrial import re 83.9 3.7 0.00013 25.7 5.8 28 186-213 22-49 (73)
262 3txn_A 26S proteasome regulato 82.0 13 0.00044 31.3 10.3 60 151-210 103-168 (394)
263 2crb_A Nuclear receptor bindin 81.8 2.8 9.5E-05 27.5 4.7 28 112-139 14-41 (97)
264 1wy6_A Hypothetical protein ST 81.7 9 0.00031 27.5 7.7 53 159-211 103-155 (172)
265 4a5x_A MITD1, MIT domain-conta 80.8 4.4 0.00015 26.2 5.5 32 111-142 14-45 (86)
266 2v6x_A Vacuolar protein sortin 79.5 3.9 0.00013 26.2 5.0 34 109-142 9-42 (85)
267 2cwy_A Hypothetical protein TT 79.3 9.2 0.00031 25.1 6.8 57 117-175 5-67 (94)
268 2v6y_A AAA family ATPase, P60 78.9 10 0.00035 24.2 8.1 33 110-142 8-40 (83)
269 1wfd_A Hypothetical protein 15 78.1 5.3 0.00018 26.2 5.4 33 110-142 12-44 (93)
270 2cfu_A SDSA1; SDS-hydrolase, l 77.6 5.2 0.00018 36.1 6.9 50 113-162 449-498 (658)
271 2crb_A Nuclear receptor bindin 76.6 8.6 0.0003 25.2 5.8 29 147-175 15-43 (97)
272 2ijq_A Hypothetical protein; s 76.5 18 0.00061 26.3 8.3 59 151-209 36-103 (161)
273 4gq2_M Nucleoporin NUP120; bet 76.4 20 0.00067 33.8 10.7 92 119-214 816-931 (950)
274 2cpt_A SKD1 protein, vacuolar 75.9 5.9 0.0002 27.2 5.3 34 109-142 14-47 (117)
275 3t5x_A PCI domain-containing p 75.9 10 0.00035 28.7 7.2 37 111-147 12-48 (203)
276 3ax2_A Mitochondrial import re 74.8 13 0.00044 23.2 7.5 33 117-149 21-53 (73)
277 2v6y_A AAA family ATPase, P60 73.9 3.7 0.00012 26.4 3.6 18 158-175 22-39 (83)
278 4fhn_B Nucleoporin NUP120; pro 73.7 16 0.00053 35.2 9.4 89 120-212 819-930 (1139)
279 2vkj_A TM1634; membrane protei 72.8 13 0.00043 24.2 5.8 34 111-144 51-84 (106)
280 1om2_A Protein (mitochondrial 72.8 5.8 0.0002 26.2 4.4 28 152-179 25-52 (95)
281 3t5v_B Nuclear mRNA export pro 72.6 5.4 0.00018 34.3 5.4 88 127-214 140-254 (455)
282 3t5x_A PCI domain-containing p 71.4 11 0.00039 28.3 6.5 35 147-181 14-48 (203)
283 3spa_A Mtrpol, DNA-directed RN 69.6 49 0.0017 31.8 11.3 74 147-220 127-206 (1134)
284 3g36_A Protein DPY-30 homolog; 68.3 5.1 0.00017 23.6 3.0 27 11-41 21-47 (55)
285 3re2_A Predicted protein; meni 67.7 32 0.0011 28.7 8.5 65 146-210 254-325 (472)
286 2cfu_A SDSA1; SDS-hydrolase, l 67.3 12 0.00041 33.7 6.8 50 148-197 450-499 (658)
287 2rpa_A Katanin P60 ATPase-cont 66.9 8.3 0.00028 24.4 4.0 29 114-142 13-41 (78)
288 1wy6_A Hypothetical protein ST 66.8 33 0.0011 24.6 9.4 61 117-177 94-155 (172)
289 1om2_A Protein (mitochondrial 66.7 19 0.00065 23.7 5.9 35 114-148 21-55 (95)
290 4gq2_M Nucleoporin NUP120; bet 66.5 18 0.00061 34.1 7.9 53 153-209 816-868 (950)
291 1qsa_A Protein (soluble lytic 66.1 9.5 0.00032 34.1 5.7 90 122-211 294-411 (618)
292 3mkr_B Coatomer subunit alpha; 64.0 57 0.002 26.5 12.5 115 113-227 102-244 (320)
293 4b4t_P 26S proteasome regulato 64.0 41 0.0014 28.5 9.2 67 110-176 174-247 (445)
294 3mv2_A Coatomer subunit alpha; 63.2 60 0.0021 26.4 13.4 114 113-227 114-253 (325)
295 2npu_A FKBP12-rapamycin comple 62.2 17 0.00059 25.2 5.3 56 118-176 45-103 (126)
296 3u84_A Menin; MLL, JUND, ledgf 62.1 44 0.0015 28.5 8.5 45 166-210 298-347 (550)
297 2dl1_A Spartin; SPG20, MIT, st 61.6 7.8 0.00027 26.5 3.3 15 163-177 19-33 (116)
298 2rkl_A Vacuolar protein sortin 60.7 22 0.00076 20.6 5.5 36 107-142 14-49 (53)
299 3t5v_B Nuclear mRNA export pro 58.9 62 0.0021 27.7 9.3 68 113-180 176-254 (455)
300 4gq4_A Menin; tumor suppressor 58.1 87 0.003 26.6 10.1 46 165-210 282-332 (489)
301 2w2u_A Hypothetical P60 katani 58.1 20 0.00068 22.8 4.7 18 158-175 30-47 (83)
302 3qnk_A Putative lipoprotein; a 57.5 24 0.00082 30.6 6.7 48 163-210 153-211 (517)
303 3hdx_A SUSD homolog, SUSD supe 56.8 34 0.0011 29.3 7.4 48 163-210 156-226 (478)
304 3myv_A SUSD superfamily protei 55.9 37 0.0013 28.8 7.5 31 145-175 188-218 (454)
305 2lmt_A Calmodulin-related prot 54.8 20 0.00067 24.8 4.8 41 1-43 1-41 (148)
306 4b4t_O 26S proteasome regulato 54.7 92 0.0031 25.9 10.6 88 122-209 85-197 (393)
307 3myv_A SUSD superfamily protei 54.5 22 0.00074 30.3 5.8 47 163-209 164-218 (454)
308 2cwy_A Hypothetical protein TT 54.2 42 0.0014 21.8 5.9 56 152-209 6-67 (94)
309 3lew_A SUSD-like carbohydrate 54.0 38 0.0013 29.2 7.3 48 163-210 174-232 (495)
310 2rpa_A Katanin P60 ATPase-cont 53.8 17 0.00057 23.0 3.7 26 151-176 16-41 (78)
311 4a5x_A MITD1, MIT domain-conta 53.1 26 0.00089 22.4 4.7 22 154-175 23-44 (86)
312 3jq1_A SUSD superfamily protei 53.0 26 0.00088 30.1 6.1 47 163-209 154-208 (481)
313 3kez_A Putative sugar binding 52.7 38 0.0013 28.8 7.1 47 163-209 170-224 (461)
314 3kez_A Putative sugar binding 52.4 41 0.0014 28.6 7.2 33 144-176 193-225 (461)
315 3i4g_A SUSD-like carbohydrate 52.4 41 0.0014 29.3 7.3 47 163-209 167-226 (528)
316 2qx5_A Nucleoporin NIC96; mRNA 52.1 78 0.0027 28.5 9.1 97 117-214 447-570 (661)
317 3re2_A Predicted protein; meni 52.1 31 0.0011 28.7 5.9 43 132-174 276-323 (472)
318 3lew_A SUSD-like carbohydrate 49.5 51 0.0017 28.3 7.4 34 144-177 200-233 (495)
319 2e2a_A Protein (enzyme IIA); h 49.5 38 0.0013 22.7 5.1 33 109-141 16-48 (105)
320 3u84_A Menin; MLL, JUND, ledgf 49.3 36 0.0012 29.0 5.9 45 131-175 297-346 (550)
321 3mcx_A SUSD superfamily protei 49.1 44 0.0015 28.5 6.9 32 145-176 200-231 (477)
322 1wcr_A PTS system, N, N'-diace 49.0 39 0.0013 22.5 5.1 32 110-141 15-46 (103)
323 3mcx_A SUSD superfamily protei 48.5 26 0.00088 30.0 5.4 48 163-210 176-231 (477)
324 2yhe_A SEC-alkyl sulfatase; hy 53.8 3.8 0.00013 37.1 0.0 52 114-165 462-513 (668)
325 4a1g_A Mitotic checkpoint seri 47.8 74 0.0025 22.8 10.0 75 147-227 71-149 (152)
326 1dee_G Immunoglobulin G bindin 47.2 14 0.00049 21.3 2.3 21 1-24 15-35 (54)
327 2wvi_A Mitotic checkpoint seri 46.3 82 0.0028 22.8 11.2 88 133-226 43-143 (164)
328 2v6x_A Vacuolar protein sortin 46.2 39 0.0013 21.3 4.7 18 158-175 24-41 (85)
329 1wfd_A Hypothetical protein 15 45.7 39 0.0013 21.9 4.7 18 158-175 26-43 (93)
330 3k1s_A PTS system, cellobiose- 45.0 48 0.0016 22.3 5.1 33 109-141 18-50 (109)
331 2ynq_A ESSB; membrane protein, 44.1 88 0.003 22.6 9.4 84 115-204 10-96 (161)
332 3l8r_A PTCA, putative PTS syst 43.7 41 0.0014 23.1 4.7 33 109-141 33-65 (120)
333 2cpt_A SKD1 protein, vacuolar 43.7 36 0.0012 23.2 4.5 32 129-175 15-46 (117)
334 4gq4_A Menin; tumor suppressor 43.4 50 0.0017 28.1 5.9 44 131-174 282-330 (489)
335 3fap_B FRAP, FKBP12-rapamycin 43.3 47 0.0016 21.7 4.8 21 121-141 18-38 (94)
336 4aez_C MAD3, mitotic spindle c 42.7 1.1E+02 0.0038 23.4 11.4 88 133-226 97-197 (223)
337 3bu8_A Telomeric repeat-bindin 42.3 38 0.0013 25.9 4.7 47 121-167 122-168 (235)
338 2izx_A CAMP-dependent protein 40.9 21 0.00072 19.1 2.4 27 11-41 10-37 (41)
339 2dl1_A Spartin; SPG20, MIT, st 40.9 69 0.0024 21.8 5.4 31 110-140 19-49 (116)
340 3otn_A SUSD superfamily protei 40.8 37 0.0013 29.1 5.2 48 163-210 160-226 (482)
341 2kzi_A Engineered protein, ZHE 40.6 20 0.00067 21.9 2.3 21 1-24 31-51 (70)
342 1zxg_A Immunoglobulin G bindin 39.7 19 0.00066 21.1 2.1 21 1-24 19-39 (59)
343 3esl_A Checkpoint serine/threo 38.8 1.2E+02 0.0042 22.7 9.7 72 109-181 76-149 (202)
344 3snx_A SUSD homolog, putative 38.0 67 0.0023 27.3 6.3 48 163-210 160-220 (460)
345 2izy_A CAMP-dependent protein 37.5 24 0.00083 20.4 2.4 28 10-41 12-40 (54)
346 3qnk_A Putative lipoprotein; a 37.5 94 0.0032 26.8 7.2 33 144-176 179-211 (517)
347 3bqo_A Telomeric repeat-bindin 37.0 33 0.0011 25.9 3.6 50 119-168 123-172 (211)
348 2kyg_A CAMP-dependent protein 36.2 26 0.0009 19.8 2.4 27 11-41 18-45 (50)
349 3ckc_A SUSD; TPR repeat, carbo 35.0 1.1E+02 0.0036 26.3 7.2 63 147-209 129-231 (527)
350 2yhe_A SEC-alkyl sulfatase; hy 39.6 8.9 0.00031 34.7 0.0 52 149-200 463-514 (668)
351 3hdx_A SUSD homolog, SUSD supe 33.2 1E+02 0.0035 26.2 6.7 34 143-176 193-226 (478)
352 2vkj_A TM1634; membrane protei 32.6 1E+02 0.0035 20.0 6.5 29 148-176 54-82 (106)
353 3snx_A SUSD homolog, putative 32.2 91 0.0031 26.5 6.2 35 143-177 187-221 (460)
354 3jq1_A SUSD superfamily protei 30.3 82 0.0028 26.9 5.6 32 144-175 177-208 (481)
355 3jys_A SUSD superfamily protei 30.3 93 0.0032 26.7 6.0 62 147-208 120-221 (499)
356 1w7j_B Myosin light chain 1; m 30.0 32 0.0011 23.4 2.5 41 1-43 1-41 (151)
357 4f9k_A CAMP-dependent protein 29.8 35 0.0012 22.3 2.4 23 15-41 57-79 (95)
358 2wpv_A GET4, UPF0363 protein Y 29.6 1.6E+02 0.0055 23.7 6.9 63 146-208 133-215 (312)
359 3eab_A Spastin; spastin, MIT, 28.7 38 0.0013 21.9 2.4 15 128-142 12-26 (89)
360 2br9_A 14-3-3E, 14-3-3 protein 28.7 1E+02 0.0035 23.8 5.3 46 161-208 151-200 (234)
361 2ovk_C Myosin catalytic light 28.6 1.2E+02 0.004 20.6 5.4 40 2-43 1-42 (159)
362 3v86_A De novo design helix; c 28.1 54 0.0018 15.4 2.4 16 6-21 6-21 (27)
363 2xze_A STAM-binding protein; h 28.1 1E+02 0.0034 21.8 4.8 33 110-142 37-69 (146)
364 1x46_A Globin chain, hemoglobi 27.8 40 0.0014 23.6 2.7 36 1-43 4-39 (150)
365 3i5g_B Myosin regulatory light 27.2 1.1E+02 0.0037 21.2 5.0 40 2-44 8-48 (153)
366 3qwo_C Motavizumab epitope sca 27.1 49 0.0017 19.2 2.4 21 1-24 16-36 (57)
367 1o3u_A Conserved hypothetical 26.7 1.5E+02 0.005 20.3 5.5 35 108-142 11-45 (135)
368 1zoq_C CREB-binding protein, i 25.6 20 0.00069 19.9 0.6 16 11-26 18-33 (47)
369 1j7q_A CAVP, calcium vector pr 25.5 1.1E+02 0.0039 18.2 4.7 39 2-43 6-45 (86)
370 3i4g_A SUSD-like carbohydrate 25.1 1.6E+02 0.0056 25.4 6.6 32 145-176 196-227 (528)
371 2ymb_A MITD1, MIT domain-conta 25.0 15 0.00052 28.9 0.0 32 111-142 21-52 (257)
372 4b4y_A Neuroglobin; transport 24.8 73 0.0025 22.3 3.7 40 1-43 6-45 (154)
373 2a9u_A Ubiquitin carboxyl-term 24.7 1.5E+02 0.0051 20.9 5.2 33 110-142 39-71 (144)
374 1wdc_C Scallop myosin; calcium 24.1 1.4E+02 0.0049 20.0 5.2 40 2-43 1-42 (156)
375 1o9d_A 14-3-3-like protein C; 23.8 1.4E+02 0.0048 23.4 5.3 15 160-174 191-205 (260)
376 2jpu_A ORF C02003 protein; sol 23.7 1.2E+02 0.0042 21.0 4.4 30 113-142 7-36 (129)
377 3uzd_A 14-3-3 protein gamma; s 21.6 1.7E+02 0.0057 22.8 5.3 14 160-173 187-200 (248)
378 3iv0_A SUSD homolog; NP_809186 21.6 1.4E+02 0.0049 25.3 5.5 46 163-208 166-239 (481)
379 3i5g_C Myosin catalytic light 21.6 1.6E+02 0.0056 20.4 5.1 39 3-44 2-43 (159)
380 2lv7_A Calcium-binding protein 21.5 1.3E+02 0.0045 19.2 4.2 41 3-45 29-69 (100)
381 3ubw_A 14-3-3E, 14-3-3 protein 21.3 1.7E+02 0.0058 23.0 5.3 45 162-208 178-226 (261)
382 2pmr_A Uncharacterized protein 21.3 1.7E+02 0.0058 18.7 5.5 28 110-137 36-63 (87)
383 2xuv_A HDEB, 10K-L protein; un 21.1 1E+02 0.0035 19.4 3.3 23 4-26 43-65 (79)
384 2oo2_A Hypothetical protein AF 21.0 1.7E+02 0.0059 18.6 5.5 30 108-137 30-59 (86)
385 2joj_A Centrin protein; N-term 20.9 1.2E+02 0.004 17.5 3.7 38 4-43 1-38 (77)
386 4abx_A DNA repair protein RECN 20.8 75 0.0026 23.1 3.1 47 132-178 75-121 (175)
387 2npu_A FKBP12-rapamycin comple 20.7 1.7E+02 0.0057 20.2 4.6 74 153-229 46-125 (126)
388 3mv2_A Coatomer subunit alpha; 20.6 2.9E+02 0.01 22.4 6.7 59 119-177 34-144 (325)
389 2wx4_A DCP1, decapping protein 20.6 61 0.0021 18.1 1.9 29 10-42 13-41 (46)
390 3bu8_A Telomeric repeat-bindin 20.5 92 0.0032 23.8 3.5 44 154-197 121-164 (235)
391 1wdc_B Scallop myosin; calcium 20.3 1.6E+02 0.0054 19.8 4.7 39 2-43 10-49 (156)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.90 E-value=2.6e-22 Score=145.45 Aligned_cols=116 Identities=20% Similarity=0.432 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
+|+.+..++.+|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++.+|+.+|+++++++|.++.+|+++|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT 224 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~ 224 (231)
.++..+|++++|+..|+++++++|++. +...+..+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999865 666665553
No 2
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.88 E-value=3.5e-21 Score=144.03 Aligned_cols=121 Identities=12% Similarity=0.009 Sum_probs=111.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183 (231)
Q Consensus 104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~ 183 (231)
.+..-+++.+..++.+|..++..|+|++|+..|++++.++|+++.+|+++|.++..+|+|++|+.+|++++.++|+++.+
T Consensus 27 ~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 33445677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVT 224 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~ 224 (231)
|+++|.+|..+|++++|+..|++++++.|+....+..+...
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~ll 147 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYL 147 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999987555444443
No 3
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.85 E-value=2.1e-20 Score=135.46 Aligned_cols=116 Identities=23% Similarity=0.321 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS------- 180 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------- 180 (231)
...+.+.++..+|+.++..|+|++|+.+|+++|+++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|.+
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223 (231)
Q Consensus 181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~ 223 (231)
+.+|+++|.++..+|++++|+..|++++.+.|+......++++
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~l 125 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHHHh
Confidence 3589999999999999999999999999999987766666554
No 4
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.5e-19 Score=129.87 Aligned_cols=117 Identities=24% Similarity=0.342 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
..+..++.+|..++..|+|++|+..|++++.++|+++.+|+++|.++..+|+|++|+.+|++++.++|+++.+|+++|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC------CCHH-HHHHHHhhchhh
Q psy13481 191 YRLLGKWEEAAVDLRNACKID------FDEQ-ADEWLKEVTPNK 227 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~------p~~~-~~~~l~~~~~~~ 227 (231)
+..+|++++|+..|++++.++ |++. +...+..+..++
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999 8764 666666665543
No 5
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.83 E-value=1.1e-19 Score=136.02 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-------SAL-----LYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
+...+..++..|+.++..|+|++|+..|+++|+++|+ +.. +|.++|.++.++|+|++|+.+|+++|++
T Consensus 7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3556889999999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred -------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 177 -------NPDSAAAY----KFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 177 -------~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+|++..+| +++|.++..+|++++|+.+|+++++++|++
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999 999999999999999999999999999963
No 6
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.82 E-value=1.7e-19 Score=134.04 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=104.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481 105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
....++.....++.+|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|+|++|+.+|++++.++|+++.++
T Consensus 13 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred HHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 33445777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+++|.++..+|++++|+..|+++++++|++
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 999999999999999999999999999873
No 7
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.82 E-value=2.7e-19 Score=134.20 Aligned_cols=122 Identities=20% Similarity=0.252 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL------------------NPSSALLYAKRGQSYLQLSKPNACIRD 169 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~Ai~~ 169 (231)
+....+..+...|..++..|+|++|+..|++++.+ +|.+..+|+++|.+|+++|+|.+|+.+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34456889999999999999999999999999999 777889999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH--HHHHHHhhchhhhc
Q psy13481 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ--ADEWLKEVTPNKLN 229 (231)
Q Consensus 170 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~l~~~~~~~~k 229 (231)
|++++.++|.++.+|+.+|.+|..+|++++|+.+|++++.++|++. +...+..+...+++
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999865 46666666665543
No 8
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.82 E-value=2.3e-19 Score=131.96 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
..++.....++.+|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|+|++|+.+|++++.++|+++.++++
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN 226 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~ 226 (231)
+|.++..+|++++|+..|++++.++|++. ...+..++...
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999998643 34444444333
No 9
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.81 E-value=3.9e-19 Score=132.31 Aligned_cols=120 Identities=11% Similarity=-0.015 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
....++....++.+|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+
T Consensus 24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence 34567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHH-HHHHHhcCCCHH-HHHHHHhhch
Q psy13481 186 FRGRAYRLLGKWEEAAVD-LRNACKIDFDEQ-ADEWLKEVTP 225 (231)
Q Consensus 186 ~lg~~~~~~g~~~~A~~~-~~~al~l~p~~~-~~~~l~~~~~ 225 (231)
++|.++..+|++++|... ++++++++|++. +.....++..
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 999999999999887765 599999999875 5555555543
No 10
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.79 E-value=1.1e-18 Score=131.20 Aligned_cols=107 Identities=16% Similarity=0.280 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
....+..++.+|..++..|+|++|+..|++++.++|++..+|+++|.+|+.+|+|++|+.+|++++.++|.++.+|+++|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.+|..+|++++|+.+|++++.++|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 999999999999999999999999853
No 11
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.76 E-value=9.9e-18 Score=120.26 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194 (231)
Q Consensus 115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~ 194 (231)
.++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|++++.++|+++.+++.+|.++..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCHH
Q psy13481 195 GKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 195 g~~~~A~~~~~~al~l~p~~~ 215 (231)
|++++|+..|+++++++|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 999999999999999999753
No 12
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.75 E-value=2.8e-17 Score=118.95 Aligned_cols=116 Identities=24% Similarity=0.436 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
.+..++..|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|+|++|+..|++++.++|.++.+++.+|.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC------HHHHHHHHhhchhh
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFD------EQADEWLKEVTPNK 227 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~------~~~~~~l~~~~~~~ 227 (231)
..+|++++|+..|++++.++|+ ..+...+..+..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887 34666666655443
No 13
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=3.2e-17 Score=140.09 Aligned_cols=118 Identities=14% Similarity=0.038 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK-PNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
.++.+.++..+|.++...|++++|+..|+++|.++|++..+|+++|.++..+|+ +++|+.+|++++.++|++..+|+++
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 344566677777777777777777777777777777777777777777777775 7777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN 226 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~ 226 (231)
|.++..+|++++|+.+|++++.++|++. ++..+..+...
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~ 212 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence 7777777777777777777777777643 44444444433
No 14
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.74 E-value=2.9e-16 Score=111.53 Aligned_cols=123 Identities=30% Similarity=0.411 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
...+..+..++.+|..++..|++++|+..|++++..+|++..++..+|.++...|++.+|+..+++++.++|.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 35677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhc
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLN 229 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k 229 (231)
+|.++..+|++++|+..|++++.++|++. +...+..+...+++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999754 66666666655544
No 15
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.74 E-value=1.2e-16 Score=134.13 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHH
Q psy13481 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---------------ALLYAKRGQSYLQLSKPNACIRDC 170 (231)
Q Consensus 106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~Ai~~~ 170 (231)
....+..+..++.+|..++..|+|++|+..|++++.++|++ ..+|+++|.++.++|+|.+|+.+|
T Consensus 140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35678889999999999999999999999999999999998 699999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481 171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK 227 (231)
Q Consensus 171 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~ 227 (231)
++++.++|.++.+|+++|.+|..+|++++|+.+|+++++++|++. +...+..+...+
T Consensus 220 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 220 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999854 555555555443
No 16
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.73 E-value=2.2e-16 Score=110.29 Aligned_cols=112 Identities=28% Similarity=0.453 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
.+..++..|..++..|++++|+..|++++..+|++..++.++|.++...|++++|+..+++++.++|.++.+++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV 223 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~ 223 (231)
..+|++++|...|++++.++|++. +...+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 999999999999999999999864 44444443
No 17
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.73 E-value=1.3e-16 Score=124.76 Aligned_cols=118 Identities=18% Similarity=0.202 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy13481 107 EEDIDKSNEKKR----------------EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC 170 (231)
Q Consensus 107 ~~~~~~a~~~~~----------------~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~ 170 (231)
..+++.+..++. +|.++...|++++|+..|+++++++|++..+|+++|.++..+|++++|+.+|
T Consensus 32 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 111 (208)
T 3urz_A 32 ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMY 111 (208)
T ss_dssp HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445666777777 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHc-----------------------------------CCHHHHHHHHHHHHhcCCCHH
Q psy13481 171 SVALKINPDSAAAYKFRGRAYRLL-----------------------------------GKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 171 ~~al~~~p~~~~~~~~lg~~~~~~-----------------------------------g~~~~A~~~~~~al~l~p~~~ 215 (231)
++++.++|+++.+|+++|.+|+.. |++++|+.+|+++++++|+..
T Consensus 112 ~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 112 EKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999988888776443 468899999999999999987
Q ss_pred HHHHHHhhc
Q psy13481 216 ADEWLKEVT 224 (231)
Q Consensus 216 ~~~~l~~~~ 224 (231)
+...+..+.
T Consensus 192 ~~~~l~~i~ 200 (208)
T 3urz_A 192 AQKTLDKIL 200 (208)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666654
No 18
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.73 E-value=1.1e-16 Score=113.92 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------HHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-------AAAY 184 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~~~ 184 (231)
.+..++.+|..++..|++++|+..|++++..+|++..+++++|.++...|++.+|+..|++++.++|.+ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999887 8999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhhcc
Q psy13481 185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNL 230 (231)
Q Consensus 185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~k~ 230 (231)
+.+|.++..+|++++|+..|++++.+.|+......+..+...+++.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999877888888887776654
No 19
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.73 E-value=2.2e-16 Score=122.06 Aligned_cols=122 Identities=19% Similarity=0.192 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA----------------LLYAKRGQSYLQLSKPNACIRDC 170 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~Ai~~~ 170 (231)
......+..++..|..++..|+|++|+..|++++.+.|+++ .+|+++|.++..+|+|.+|+.+|
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45677889999999999999999999999999999999887 89999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481 171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKL 228 (231)
Q Consensus 171 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~ 228 (231)
++++.++|.++.+++.+|.++..+|++++|+..|++++.++|++. +...+..+...+.
T Consensus 112 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 112 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999754 6666666655543
No 20
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.73 E-value=6.5e-17 Score=148.36 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
|+.+.++..+|..+...|++++|+..|+++++++|+++.+|+++|.+|.++|++++|+..|+++++++|+++.+|+++|.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
++..+|++++|+..|+++++++|+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~ 109 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA 109 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Confidence 555555555555555555555554
No 21
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.72 E-value=1.6e-16 Score=138.66 Aligned_cols=122 Identities=17% Similarity=0.279 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---------------ALLYAKRGQSYLQLSKPNACIRDCS 171 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~Ai~~~~ 171 (231)
...+..+..++.+|..++..|+|.+|+..|++++.++|++ ..+|+++|.||+++|+|.+|+.+|+
T Consensus 262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5677889999999999999999999999999999999998 7999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481 172 VALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKL 228 (231)
Q Consensus 172 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~ 228 (231)
+++.++|++..+|+++|.+|..+|+|++|+.+|+++++++|++. +...+..+...++
T Consensus 342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999865 5555555554443
No 22
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.72 E-value=1.2e-16 Score=124.80 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAK----------------RGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
+..+...|..++..|+|++|+..|++++..+|+++.+|+. +|.++..+|++++|+..|++++.+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q psy13481 177 NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLK 221 (231)
Q Consensus 177 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~ 221 (231)
+|+++.+++++|.++..+|++++|+..|+++++++|++. +...+.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 129 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999854 443333
No 23
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-16 Score=112.40 Aligned_cols=116 Identities=22% Similarity=0.385 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
.....++.+|..++..|++++|+..|++++..+|++..+++++|.++...|++++|+..+++++.++|.+..+++.+|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCH-HHHHHHHhhchh
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFDE-QADEWLKEVTPN 226 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~~-~~~~~l~~~~~~ 226 (231)
+..+|++++|+..|++++.++|++ .+...+..+...
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999975 356656555443
No 24
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.71 E-value=5.1e-16 Score=111.05 Aligned_cols=102 Identities=19% Similarity=0.149 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA---LLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFR 187 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~l 187 (231)
..++..|..++..|+|++|+..|++++..+|++. .+++.+|.+++..|+|++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3567899999999999999999999999999988 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
|.++..+|++++|+..|++++..+|++.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 9999999999999999999999999855
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1.6e-16 Score=124.96 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhCC
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL-----------SKPNACIRDCSVALKINP 178 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-----------~~~~~Ai~~~~~al~~~p 178 (231)
++.+..++.+|..+...|++++|+..|+++++++|+++.+|+++|.++..+ |++++|+..|++++.++|
T Consensus 36 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 115 (217)
T 2pl2_A 36 PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115 (217)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc
Confidence 334555566666666666666666666666666666666666666666666 666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 179 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
+++.+++++|.++..+|++++|+..|+++++++
T Consensus 116 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 116 RYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 666666666666666666666666666666665
No 26
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.8e-16 Score=112.85 Aligned_cols=112 Identities=21% Similarity=0.377 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
+..++..|..++..|+|++|+..|++++..+|++ ..+|+++|.++...|+|++|+..|++++.++|.++.+++.+|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 6788999999999999999999999999999988 8999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT 224 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~ 224 (231)
++..+|++++|+..|++++.++|++. +...+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999854 566555554
No 27
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.69 E-value=2.3e-15 Score=111.70 Aligned_cols=109 Identities=26% Similarity=0.443 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
......+..++.+|..++..|++++|+..|.+++..+|++..+++++|.++...|+|.+|+..+++++.++|.++.+++.
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 86 (166)
T 1a17_A 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+|.++..+|++++|+..|++++.++|++.
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999754
No 28
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.69 E-value=6.5e-17 Score=120.68 Aligned_cols=102 Identities=24% Similarity=0.187 Sum_probs=92.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKP----------NACIRDCSVALKINPDSAAAYKFRGRAYRLL 194 (231)
Q Consensus 125 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~ 194 (231)
+.+.|++|+..|+++++++|+++.+|+++|.++..++++ ++|+..|++||.++|++..+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 346899999999999999999999999999999999886 4999999999999999999999999999988
Q ss_pred C-----------CHHHHHHHHHHHHhcCCCHHHHHHHHhhchh
Q psy13481 195 G-----------KWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226 (231)
Q Consensus 195 g-----------~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~ 226 (231)
| ++++|+.+|++|++++|++.......++.++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 5 8999999999999999998766555555444
No 29
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.69 E-value=2.9e-16 Score=144.06 Aligned_cols=121 Identities=23% Similarity=0.213 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
.-+++.+.++..+|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+|++
T Consensus 37 ~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~ 116 (723)
T 4gyw_A 37 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116 (723)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34455688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK 227 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~ 227 (231)
+|.+|..+|++++|+..|+++++++|++. +...+..+...+
T Consensus 117 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence 99999999999999999999999999854 555555554443
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=1.7e-16 Score=135.65 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGK-FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~-~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
..+++...+|+.+|.++...|+ +++|+..|++++.++|++..+|+++|.++..+|++.+|+.+|+++|.++|++..+|+
T Consensus 125 ~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~ 204 (382)
T 2h6f_A 125 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204 (382)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHH
Confidence 3456678899999999999997 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481 186 FRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN 226 (231)
Q Consensus 186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~ 226 (231)
++|.++..+|++++|+.+|+++++++|++. ++..+..+...
T Consensus 205 ~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999854 66555555444
No 31
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.69 E-value=2.5e-17 Score=122.45 Aligned_cols=109 Identities=9% Similarity=0.059 Sum_probs=96.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWE 198 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 198 (231)
+|..+..+|++++|+..|++++..+|+++..++.+|.+|+.+|+|++|+.+|+++++++|+++.+|+++|.+|..+|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 57777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481 199 EAAVDLRNACKIDFDEQ-ADEWLKEVTPNK 227 (231)
Q Consensus 199 ~A~~~~~~al~l~p~~~-~~~~l~~~~~~~ 227 (231)
+|+..|+++++++|++. +...+..+..+.
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999854 555555554443
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.68 E-value=1.4e-15 Score=115.68 Aligned_cols=103 Identities=22% Similarity=0.227 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...+...|..+...++++.|+..+.+++.++|++..++..+|.++..+|+|++|+..|+++++++|.++.+|+++|.+|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.+|++++|+..|++|++++|++.
T Consensus 153 ~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhCCccCH
Confidence 99999999999999999999763
No 33
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.68 E-value=8.1e-16 Score=130.86 Aligned_cols=122 Identities=20% Similarity=0.321 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIK----------------LNPSSALLYAKRGQSYLQLSKPNACIRDC 170 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~----------------~~p~~~~~~~~la~~~~~~~~~~~Ai~~~ 170 (231)
......+..++.+|..++..|+|++|+..|+++++ .+|.+..+|+++|.+|+++|+|++|+.+|
T Consensus 217 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 296 (370)
T 1ihg_A 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 34566788899999999999999999999999999 78888999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481 171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKL 228 (231)
Q Consensus 171 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~ 228 (231)
++++.++|.++.+|+++|.+|..+|++++|+..|+++++++|++. +...+..+...++
T Consensus 297 ~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 297 LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999754 6666666655443
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=8.9e-16 Score=120.70 Aligned_cols=118 Identities=17% Similarity=0.132 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481 107 EEDIDKSNEKKREAIHAYND-----------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~-----------~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
..+++....++.+|..+... |++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|++++.
T Consensus 67 ~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 67 ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 34455667788888888888 8888888888888888888888888888888888888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTP 225 (231)
Q Consensus 176 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~ 225 (231)
++ +++.+++++|.++..+|++++|+..|+++++++|++. +...+..+..
T Consensus 147 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 147 LE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196 (217)
T ss_dssp HC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred cc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 88 8888888888888888888888888888888888754 4444444443
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=3.2e-15 Score=113.55 Aligned_cols=114 Identities=20% Similarity=0.262 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----------------
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK----------------- 175 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~----------------- 175 (231)
+..++.+|..+...|+|++|+..|+++++++|+++.+|.++|.++..+|++++|+..+.+++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 456677777777777777777777777777777777777777777777776666655555544
Q ss_pred -----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481 176 -----------------INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN 226 (231)
Q Consensus 176 -----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~ 226 (231)
++|.+..++..+|.++..+|++++|+..|+++++++|++. +...+..+...
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 4555555566666666666666666666666666666543 44444444433
No 36
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.66 E-value=7.3e-16 Score=116.67 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCh--HHHHHHHHHHHhhCCCCHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQS-YLQLSKP--NACIRDCSVALKINPDSAAA 183 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~Ai~~~~~al~~~p~~~~~ 183 (231)
...+.....++.+|..++..|++++|+..|++++.++|+++.++.++|.+ +...|++ ++|+..|++++.++|.+..+
T Consensus 38 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 117 (177)
T 2e2e_A 38 RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117 (177)
T ss_dssp HHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHH
Confidence 34455678999999999999999999999999999999999999999999 8899999 99999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
++.+|.++..+|++++|+..|++++.++|++.
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999864
No 37
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.66 E-value=9.8e-15 Score=102.64 Aligned_cols=112 Identities=23% Similarity=0.397 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
+..++.+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++.++|.+..+++.+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT 224 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~ 224 (231)
..|++++|...|++++.++|++. +...+..+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999999999754 444444443
No 38
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.66 E-value=3.2e-16 Score=108.52 Aligned_cols=102 Identities=18% Similarity=0.352 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SAAAYKFRGRA 190 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~lg~~ 190 (231)
+..++.+|..++..|++++|+..|++++..+|.+..+|+++|.++...|++++|+..+++++.++|. +..+++.+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHc-CCHHHHHHHHHHHHhcCCCH
Q psy13481 191 YRLL-GKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 191 ~~~~-g~~~~A~~~~~~al~l~p~~ 214 (231)
+..+ |++++|+.++++++...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999 99999999999999999864
No 39
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.65 E-value=4.2e-16 Score=130.96 Aligned_cols=117 Identities=23% Similarity=0.330 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA-----------------LLYAKRGQSYLQLSKPNACIRD 169 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~Ai~~ 169 (231)
...+..+..++.+|..++..|+|.+|+..|++++.+.|++. .+|+++|.+|+++|+|.+|+.+
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46678899999999999999999999999999999999877 4999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV 223 (231)
Q Consensus 170 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~ 223 (231)
|++++.++|.+..+|+++|.+|..+|++++|+.+|+++++++|++. +...+..+
T Consensus 253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999865 55555544
No 40
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.65 E-value=5.3e-15 Score=116.27 Aligned_cols=103 Identities=24% Similarity=0.221 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP-SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
+..++..|..++..|+|++|+..|++++.++| .+..+++++|.++..+|+|++|+..|++++.++|.+..+++.+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 47889999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
..+|++++|+..|+++++++|++.
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~ 110 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNA 110 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcH
Confidence 999999999999999999999864
No 41
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.64 E-value=1.6e-15 Score=124.05 Aligned_cols=102 Identities=26% Similarity=0.482 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
+..++.+|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|+|++|+.+|++++.++|++..+++++|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCH
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+|++++|+..|+++++++|++
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999864
No 42
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.63 E-value=4.4e-16 Score=110.45 Aligned_cols=91 Identities=21% Similarity=0.164 Sum_probs=83.6
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy13481 125 NDGKFEDAVNAYSEAIKL---NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA 201 (231)
Q Consensus 125 ~~~~~~~Ai~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 201 (231)
..|++++|+..|++++++ +|++..+|+++|.++..+|+|++|+..|++++.++|+++.+++++|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHH
Q psy13481 202 VDLRNACKIDFDEQ 215 (231)
Q Consensus 202 ~~~~~al~l~p~~~ 215 (231)
..|++++.+.|++.
T Consensus 82 ~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 82 ELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCCcH
Confidence 99999999999865
No 43
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.63 E-value=1.3e-14 Score=114.05 Aligned_cols=101 Identities=22% Similarity=0.283 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-------HHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA-------AAYK 185 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~-------~~~~ 185 (231)
...++.+|.++...|++++|+..|++++..+|++..+|.++|.++..+|++.+|+..|++++.++|+++ .+|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 121 (228)
T 4i17_A 42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYL 121 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 457777999999999999999999999999999999999999999999999999999999999999999 6799
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 186 FRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
.+|.++..+|++++|+..|+++++++|+
T Consensus 122 ~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 122 KEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999998
No 44
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.62 E-value=1.5e-14 Score=112.24 Aligned_cols=102 Identities=20% Similarity=0.159 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-----------
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA----------- 181 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~----------- 181 (231)
+..++.+|..+...|++++|+..|++++.++|++..+|+++|.++..+|+|++|+..|++++.+.|.+.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 116 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 116 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence 468899999999999999999999999999999999999999999999999999999999999888876
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 182 -----AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 182 -----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+++++|.++..+|++++|+..|++++.++|++
T Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999999999999999999974
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.8e-14 Score=112.91 Aligned_cols=115 Identities=24% Similarity=0.350 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
.+.....+..+|..++..|++++|+..|++++..+|++..+|.++|.++...|++++|+..|++++.++|+++.+++.+|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 214 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC------CCHH-HHHHHHhh
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKID------FDEQ-ADEWLKEV 223 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~------p~~~-~~~~l~~~ 223 (231)
.++..+|++++|+..|+++++++ |++. +...+.++
T Consensus 215 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 215 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99999999999999999999999 8754 44444443
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=3.3e-14 Score=113.80 Aligned_cols=107 Identities=20% Similarity=0.145 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
.+..+..++.+|..++..|++++|+..|++++..+|++..+|..+|.++...|++++|+..|++++.++|.++.+++.+|
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 118 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.++..+|++++|+..|+++++++|++.
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999999865
No 47
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.57 E-value=1.6e-15 Score=113.11 Aligned_cols=97 Identities=4% Similarity=-0.136 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 132 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
+-..|++++.++|++..+++++|.+++..|+|++|+..|++++.++|.++.+|+++|.++..+|+|++|+.+|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 34567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHH-HHHHHHhhchhhh
Q psy13481 212 FDEQ-ADEWLKEVTPNKL 228 (231)
Q Consensus 212 p~~~-~~~~l~~~~~~~~ 228 (231)
|++. ++..+..+...++
T Consensus 101 P~~~~~~~~lg~~~~~lg 118 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLK 118 (151)
T ss_dssp SSCCHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHcC
Confidence 9853 5555555554443
No 48
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.57 E-value=1.8e-14 Score=101.45 Aligned_cols=85 Identities=15% Similarity=0.231 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 130 EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 130 ~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
..|+..|+++++.+|+++.+|+++|.++...|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCH
Q psy13481 210 IDFDE 214 (231)
Q Consensus 210 l~p~~ 214 (231)
++|+.
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 98853
No 49
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.7e-15 Score=103.55 Aligned_cols=95 Identities=16% Similarity=0.321 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS------AAAYK 185 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~ 185 (231)
.+..++.+|..++..|+|++|+..|++++.++|+++.+|+++|.++..+|+|++|+.+|++++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy13481 186 FRGRAYRLLGKWEEAAVDLRN 206 (231)
Q Consensus 186 ~lg~~~~~~g~~~~A~~~~~~ 206 (231)
.+|.++..+|+++.|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988877765543
No 50
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.55 E-value=5.8e-14 Score=117.54 Aligned_cols=102 Identities=18% Similarity=0.281 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
.+..+..+|..+...|++++|+..|+++++.+|+++.+|+++|.++...|++++|+..|++++.++|+++.+++++|.+|
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~ 213 (231)
..+|++++|+..|++++.++|+
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999987
No 51
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.55 E-value=8.4e-15 Score=128.55 Aligned_cols=113 Identities=27% Similarity=0.422 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
..+..++.+|..++..|+|++|+..|+++++++|+++.+|+++|.++.++|+|++|+..|+++++++|.++.+++++|.+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV 223 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~ 223 (231)
|..+|++++|+..|+++++++|++. +...+..+
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999753 44444443
No 52
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.55 E-value=6.1e-14 Score=125.05 Aligned_cols=119 Identities=15% Similarity=0.046 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
..++..+..++.+|..+...|++++|+..|+++++++|++..+|+++|.++..+|++++|+..|++++.++|++..++++
T Consensus 17 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 96 (568)
T 2vsy_A 17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW 96 (568)
T ss_dssp ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 34455578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTP 225 (231)
Q Consensus 187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~ 225 (231)
+|.++..+|++++|+..|+++++++|++. +...+..+..
T Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 136 (568)
T 2vsy_A 97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR 136 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999754 4444444433
No 53
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.55 E-value=2.6e-13 Score=96.22 Aligned_cols=99 Identities=26% Similarity=0.411 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194 (231)
Q Consensus 115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~ 194 (231)
.++.+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q psy13481 195 GKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 195 g~~~~A~~~~~~al~l~p~ 213 (231)
|++++|+..|.+++...|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred cCHHHHHHHHHHHHHhCCC
Confidence 6666666666666666664
No 54
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.54 E-value=8.9e-14 Score=111.64 Aligned_cols=104 Identities=14% Similarity=0.100 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYK 185 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~ 185 (231)
.+..++.+|..++..|+|++|+..|++++..+|++ ..+++.+|.+++.+|+|.+|+..|++++.++|++ ..+++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 36789999999999999999999999999999999 9999999999999999999999999999998855 67899
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHHHHhcCCCHH
Q psy13481 186 FRGRAYRL--------LGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 186 ~lg~~~~~--------~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.+|.++.. +|++++|+..|++++..+|++.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 99999999 9999999999999999999853
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.3e-13 Score=108.24 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
.+.....+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++.++|.+..+++.+|
T Consensus 53 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 132 (243)
T 2q7f_A 53 NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34446788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV 223 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~ 223 (231)
.++...|++++|+..|++++.++|++. +...+..+
T Consensus 133 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 133 TVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 999999999999999999999988643 33333333
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.53 E-value=5.2e-13 Score=100.03 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|.+..++..+|.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 121 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCH
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~ 214 (231)
..|++++|+..|++++..+|++
T Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 122 NLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HcCcHHHHHHHHHHHHhcCccc
Confidence 8888888888888888888764
No 57
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.53 E-value=2e-13 Score=113.92 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
.+..+..+|..+...|++++|+..|++++.++|+++.+|+++|.++...|++++|+..|++++.++|.++.+++.+|.++
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCH------------HHHHHHHhhchhhh
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFDE------------QADEWLKEVTPNKL 228 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~~------------~~~~~l~~~~~~~~ 228 (231)
..+|++++|+..|++++.++|++ .++..+..+...+.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 99999999999999999999875 35555555554443
No 58
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.53 E-value=3.1e-13 Score=95.77 Aligned_cols=101 Identities=26% Similarity=0.410 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...+...|..+...|++++|+..|++++...|.+..+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++.
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCC
Q psy13481 193 LLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~ 213 (231)
..|++++|...|.+++.++|+
T Consensus 115 ~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 115 KQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHSTT
T ss_pred HHccHHHHHHHHHHHHccCCC
Confidence 999999999999999999886
No 59
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.53 E-value=4.4e-14 Score=101.80 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=79.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-H
Q psy13481 138 EAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-A 216 (231)
Q Consensus 138 ~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~ 216 (231)
++..++|+.+..+.++|.++++.|+|++|+..|+++++++|.++.+|+++|.++..+|++++|+..|+++++++|++. +
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999999854 5
Q ss_pred HHHHHhhchhhh
Q psy13481 217 DEWLKEVTPNKL 228 (231)
Q Consensus 217 ~~~l~~~~~~~~ 228 (231)
+..+..+...++
T Consensus 84 ~~~lg~~~~~~~ 95 (126)
T 4gco_A 84 YIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 555655554443
No 60
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.52 E-value=4.1e-13 Score=110.93 Aligned_cols=114 Identities=27% Similarity=0.346 Sum_probs=103.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL----LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
....|..+...|++++|+..|++++...|++.. ++..+|.++...|++++|+..|++++.++|.++.+++.+|.++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345688899999999999999999999999874 4667999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhc
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLN 229 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k 229 (231)
..+|++++|+..|+++++++|++. +...+..+...+++
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999854 77777777766654
No 61
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.52 E-value=2.1e-13 Score=105.63 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
.+..++.+|..++..|+|++|+..|++++ .| ++.+|+++|.++..+|++.+|+..|++++.++|.++.+++++|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 46678899999999999999999999995 44 7899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
..+|++++|+..|++++.+.|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~ 104 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGN 104 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999988863
No 62
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.52 E-value=3.1e-13 Score=115.88 Aligned_cols=112 Identities=21% Similarity=0.327 Sum_probs=103.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183 (231)
Q Consensus 104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~ 183 (231)
.+...++..+..++.+|..++..|++++|+..|++++..+|++..+|+.+|.++..+|++.+|+..|++++.++|.+..+
T Consensus 17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 96 (450)
T 2y4t_A 17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA 96 (450)
T ss_dssp ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 34456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
++.+|.+|..+|++++|+..|++++.++|++.
T Consensus 97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 99999999999999999999999999999864
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=6.8e-14 Score=122.54 Aligned_cols=115 Identities=12% Similarity=0.082 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHh
Q psy13481 113 SNEKKREAIHAYND---------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL--------SKPNACIRDCSVALK 175 (231)
Q Consensus 113 a~~~~~~a~~~~~~---------~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~Ai~~~~~al~ 175 (231)
...+..+|..+... |++++|+..|+++++++|++..+|+++|.+|..+ |++++|+..|++++.
T Consensus 170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 36788899999999 9999999999999999999999999999999999 999999999999999
Q ss_pred hCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481 176 INP---DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK 227 (231)
Q Consensus 176 ~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~ 227 (231)
++| .++.+|+++|.+|..+|++++|+..|+++++++|++. +...+..+...+
T Consensus 250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999854 455555544443
No 64
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.52 E-value=3.1e-14 Score=130.05 Aligned_cols=101 Identities=12% Similarity=-0.007 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...++.+|..++..|++++|+..|+++++++|++..+|+++|.++..+|+|++ +.+|+++++++|++..+|+++|.++.
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS 545 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555555555555555555 55555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCH
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+|++++|+..|+++++++|++
T Consensus 546 ~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HTTCHHHHHHHHHTSCTTSTTH
T ss_pred HcCCHHHHHHHHHhhcccCccc
Confidence 5555555555555555555543
No 65
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=3.5e-13 Score=106.53 Aligned_cols=115 Identities=20% Similarity=0.190 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCChHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIK--------------------------LNPSSALLYAKRGQSYLQLSKPNAC 166 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~~~~~~A 166 (231)
+..+..+|..+...|++++|+..|++++. .+|.+..++..+|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 68889999999999999999999999999 6777889999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481 167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK 227 (231)
Q Consensus 167 i~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~ 227 (231)
+..|++++.++|.++.+++.+|.++..+|++++|+..|++++.++|++. +...+..+....
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 220 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999854 555555554433
No 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=7.2e-13 Score=102.55 Aligned_cols=98 Identities=22% Similarity=0.231 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
.+..+..+|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++.++|.+..++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34555555555666666666666666666666655555666666666666666666666666666655555555566666
Q ss_pred HHc-CCHHHHHHHHHHHHh
Q psy13481 192 RLL-GKWEEAAVDLRNACK 209 (231)
Q Consensus 192 ~~~-g~~~~A~~~~~~al~ 209 (231)
... |++++|+..|++++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHHc
Confidence 665 666666666665555
No 67
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.51 E-value=3.8e-13 Score=111.12 Aligned_cols=101 Identities=22% Similarity=0.336 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
++..++..|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++.++|.+..+++.+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC
Q psy13481 192 RLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p 212 (231)
...|++++|+..|+++++++|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCC
T ss_pred HHcCChHHHHHHHHHHHhcCC
Confidence 999999999999999999999
No 68
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.51 E-value=2.2e-14 Score=131.00 Aligned_cols=117 Identities=12% Similarity=-0.020 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
++.+..++.+|..++..|++++|+..|+++++.+|++..+|+++|.++..+|+|++|+..|++++.++|+++.+|+++|.
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAA 509 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK 227 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~ 227 (231)
++..+|++++ +..|+++++++|++. ++..+..+...+
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAE 547 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc
Confidence 9999999999 999999999999854 555555554443
No 69
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.51 E-value=2.3e-13 Score=113.84 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
+..++.+|..++..|++++|+..|++++..+|++..+|+.+|.++..+|++++|+..|++++.++|.+..+++.+|.+|.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.+|++++|+..|+++++++|++.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~ 167 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYK 167 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccch
Confidence 99999999999999999998753
No 70
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.50 E-value=2.9e-13 Score=110.83 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH--------------------
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD-------------------- 169 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~-------------------- 169 (231)
+.....+..+|..+...|++++|+..|+++++.+|++..+++++|.++...|++++|+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 345677889999999999999999999999999999999999999999999998876544
Q ss_pred --------------HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH---HHHHHHHhhchhhh
Q psy13481 170 --------------CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE---QADEWLKEVTPNKL 228 (231)
Q Consensus 170 --------------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~l~~~~~~~~ 228 (231)
+++++..+|+++.+++++|.++...|++++|+..|+++++.+|++ .+...+..+...+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 556678899999999999999999999999999999999999975 36666666655544
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=2.2e-13 Score=102.06 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
.....+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..+++.+|.+
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 153 (186)
T 3as5_A 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS 153 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+..+|++++|...|++++.++|++.
T Consensus 154 ~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 154 YEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCch
Confidence 9999999999999999999988753
No 72
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.50 E-value=2.7e-13 Score=106.83 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA---AYKF 186 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~ 186 (231)
+..++.+|..++..|+|++|+..|++++..+|++ ..+++.+|.+++.+|+|++|+..|++++.++|++.. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 5678999999999999999999999999999987 479999999999999999999999999999999875 8999
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHhcCCCHH
Q psy13481 187 RGRAYRL------------------LGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 187 lg~~~~~------------------~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+|.++.. .|++++|+..|+++++.+|++.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 9999987 5799999999999999999854
No 73
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.50 E-value=3.9e-13 Score=113.51 Aligned_cols=105 Identities=20% Similarity=0.186 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
++....+..+|..+...|++++|+..|+++++++|+++.+|+++|.++...|++++|+..|++++.++|.++.++..+|.
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 33456666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
++...|++++|+..|+++++++|++
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 7777777777777777777777763
No 74
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.50 E-value=6e-13 Score=88.90 Aligned_cols=85 Identities=22% Similarity=0.402 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
..+..++.+|..++..|++++|+..|++++..+|++..+++++|.++...|++++|+..|++++.++|.+..++.++|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q psy13481 191 YRLLG 195 (231)
Q Consensus 191 ~~~~g 195 (231)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 98765
No 75
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=1.1e-12 Score=103.07 Aligned_cols=113 Identities=13% Similarity=0.090 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
....+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++.++|.+..+++.+|.++
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34566667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT 224 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~ 224 (231)
...|++++|+..|++++..+|++. ....+..+.
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 777777777777777777777632 333343333
No 76
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.49 E-value=6.9e-13 Score=108.42 Aligned_cols=103 Identities=18% Similarity=0.281 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
.....+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.++|.+..+++.+|.+
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
+..+|++++|+..|++++.++|+
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999998
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.49 E-value=1.3e-13 Score=110.59 Aligned_cols=118 Identities=17% Similarity=0.149 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHH
Q psy13481 111 DKSNEKKREAIHAYN--------DGKFEDAVNAYSEAIKLNPSSALLY-----------------AKRGQSYLQLSKPNA 165 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~--------~~~~~~Ai~~~~~al~~~p~~~~~~-----------------~~la~~~~~~~~~~~ 165 (231)
....+++.+|.+++. .|++++|+..|++++..+|++..++ +.+|.+|...|+|.+
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 346788999999999 9999999999999999999986665 889999999999999
Q ss_pred HHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCHH----HHHHHHhhchhhh
Q psy13481 166 CIRDCSVALKINPD---SAAAYKFRGRAYRLL----------GKWEEAAVDLRNACKIDFDEQ----ADEWLKEVTPNKL 228 (231)
Q Consensus 166 Ai~~~~~al~~~p~---~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~l~p~~~----~~~~l~~~~~~~~ 228 (231)
|+..|++++..+|+ ...+++.+|.+|..+ |++++|+..|+++++.+|++. +...+..+...+.
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~ 246 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLT 246 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999998 467999999999988 999999999999999999853 4555555554443
No 78
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.49 E-value=5.3e-13 Score=112.72 Aligned_cols=105 Identities=15% Similarity=0.099 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
+..+..+..+|..+...|++++|+..|++++.++|++..+|.++|.++...|++++|+..|++++.++|+++.++.++|.
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 33456666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
++...|++++|+..|++++.++|++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p~~ 270 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQPHF 270 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 7777777777777777777777753
No 79
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.48 E-value=4.9e-14 Score=104.36 Aligned_cols=96 Identities=7% Similarity=-0.024 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 131 DAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 131 ~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
.+-..|++++.++|++..+++++|.+++..|+|.+|+..|++++.++|.++.+|+++|.++..+|++++|+..|++++.+
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHH-HHHHHHhhchh
Q psy13481 211 DFDEQ-ADEWLKEVTPN 226 (231)
Q Consensus 211 ~p~~~-~~~~l~~~~~~ 226 (231)
+|++. +.-.+..+...
T Consensus 85 ~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp STTCTHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHH
Confidence 99853 44444444433
No 80
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=1.2e-12 Score=103.66 Aligned_cols=105 Identities=10% Similarity=0.099 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK--INPDSAAAYKFR 187 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~--~~p~~~~~~~~l 187 (231)
+.....+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++. .+|.+..+++.+
T Consensus 68 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 147 (252)
T 2ho1_A 68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL 147 (252)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH
Confidence 334556666666667777777777777777777776666777777777777777777777777766 666666666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
|.++...|++++|+..|++++.++|++
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence 777777777777777777777766653
No 81
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.48 E-value=8.3e-13 Score=114.67 Aligned_cols=103 Identities=20% Similarity=0.288 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
...+..++..|..++..|+|++|+..|++++..+| ++.+|.++|.++..+|++++|+..|++++.++|.+..+++.+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 35688999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
++..+|++++|+..|++++.++|.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDF 105 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999985
No 82
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=6.7e-13 Score=106.23 Aligned_cols=112 Identities=12% Similarity=0.150 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
+..+..+|..+...|++++|+..|++++..+|++..+|.++|.++..+|++++|+..|++++.++|.++.+++++|...+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999996566
Q ss_pred HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT 224 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~ 224 (231)
..+++++|+..|+++++++|++. +..++..+.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 186 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARAN 186 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 66799999999999999999853 444444433
No 83
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=2.3e-13 Score=119.20 Aligned_cols=112 Identities=14% Similarity=0.090 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKF-EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~-~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
.+..++.+|..++..|+| ++|+..|+++++++|++..+|+++|.+|...|++++|+.+|++++.++|+ ..+++++|.+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~ 179 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMV 179 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHH
Confidence 478899999999999999 99999999999999999999999999999999999999999999999999 7999999999
Q ss_pred HHHc---------CCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481 191 YRLL---------GKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT 224 (231)
Q Consensus 191 ~~~~---------g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~ 224 (231)
+..+ |++++|+..|+++++++|++. ++..+..+.
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 223 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAY 223 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999 999999999999999999854 454444444
No 84
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.47 E-value=1.2e-12 Score=109.15 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
+..++.+|..++..|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|++++.++|.++.+++.+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCH
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+|++++|+..|++++.++|++
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~ 165 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAY 165 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTT
T ss_pred HcCCHHHHHHHHHHHHHhCcCc
Confidence 9999999999999999999974
No 85
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.46 E-value=1.7e-13 Score=94.51 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=64.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 142 LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+|+++.+|+++|.+++..|+|++|+..|++++.++|+++.+|+.+|.+|..+|++++|+..|++++.+.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4788999999999999999999999999999999999999999999999999999999999999999987753
No 86
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.46 E-value=1.2e-12 Score=107.59 Aligned_cols=95 Identities=15% Similarity=0.021 Sum_probs=80.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHH
Q psy13481 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEE-AAV 202 (231)
Q Consensus 124 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-A~~ 202 (231)
...|++++|+..|++++..+|+++.+|+++|.++.++|++++|+..|++++.++|+++.+++++|.++..+|++.+ +..
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~ 256 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3458888888888888888888888899999999999999999999999999999999999999999989998876 567
Q ss_pred HHHHHHhcCCCHHHHH
Q psy13481 203 DLRNACKIDFDEQADE 218 (231)
Q Consensus 203 ~~~~al~l~p~~~~~~ 218 (231)
+++++++++|++....
T Consensus 257 ~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 257 YLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhCCCChHHH
Confidence 8888999999876333
No 87
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=1.6e-12 Score=100.49 Aligned_cols=101 Identities=16% Similarity=0.087 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHh--hCCCCHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL-SKPNACIRDCSVALK--INPDSAAAYKFRGR 189 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~Ai~~~~~al~--~~p~~~~~~~~lg~ 189 (231)
...+..+|..+...|++++|+..|++++..+|++..++..+|.++... |++++|+..+++++. .+|.+..+++.+|.
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 345555666666666666666666666666666666666666666666 666666666666666 44444556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 190 AYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
++...|++++|+..|+++++.+|+
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~~~~ 145 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAAQPQ 145 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Confidence 666666666666666666666655
No 88
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.46 E-value=8e-13 Score=100.10 Aligned_cols=124 Identities=17% Similarity=0.091 Sum_probs=101.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCHH
Q psy13481 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYL-QLSKPNACIRDCSVALKINPDSAA 182 (231)
Q Consensus 104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~Ai~~~~~al~~~p~~~~ 182 (231)
.....+++....++.+|..+...|++++|+..|++++..+| ++..+..++.+.. ..+....|+..+++++.++|+++.
T Consensus 31 ~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~ 109 (176)
T 2r5s_A 31 TLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFE 109 (176)
T ss_dssp TSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHH
Confidence 44566778888899999999999999999999999999999 7777666665433 334455689999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH---HHHHHHHhhchhhh
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE---QADEWLKEVTPNKL 228 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~l~~~~~~~~ 228 (231)
+++.+|.++...|++++|+..|+++++++|+. .+...+..+...+.
T Consensus 110 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 110 LACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999863 35666666655443
No 89
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.46 E-value=4.9e-13 Score=109.48 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLN---------PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~---------p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~ 182 (231)
....+..+|..+...|++++|+..|++++... |....++.++|.++...|++++|+..|++++.++|.+..
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 271 (330)
T 3hym_B 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAS 271 (330)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchH
Confidence 35667777888888888888888888888775 566678888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT 224 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~ 224 (231)
+++.+|.++..+|++++|+..|+++++++|++. +...+..+.
T Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 272 TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 888888888888888888888888888888644 444444443
No 90
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.46 E-value=6.3e-13 Score=116.32 Aligned_cols=106 Identities=25% Similarity=0.384 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
.....+..++.+|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|++.+|+..|++++.++|++..+++.+
T Consensus 20 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 99 (537)
T 3fp2_A 20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
|.++..+|++++|+..|+ ++.++|+.
T Consensus 100 a~~~~~~g~~~~A~~~~~-~~~~~~~~ 125 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLS-VLSLNGDF 125 (537)
T ss_dssp HHHHHHHTCHHHHHHHHH-HHC-----
T ss_pred HHHHHHcCCHHHHHHHHH-HHhcCCCC
Confidence 999999999999999996 88888874
No 91
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=4e-13 Score=107.56 Aligned_cols=102 Identities=12% Similarity=0.142 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
....+..+|..++..|++++|+..|++++. .|.+ ..+|..+|.++..+|++++|+..|++++.++|.++.++..+
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 114 (272)
T 3u4t_A 36 SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI 114 (272)
T ss_dssp CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 344566667777777777777777777776 3322 34467777777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 188 GRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
|.++..+|++++|+..|++++.++|++
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 777777777777777777777777654
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.45 E-value=1.3e-12 Score=102.91 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------cCChHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL---LYAKRGQSYLQ------------------LSKPNACIRDCS 171 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~la~~~~~------------------~~~~~~Ai~~~~ 171 (231)
..+++.+|.+++..|+|++|+..|+++++.+|++.. +++.+|.++.. .|++++|+..|+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 467889999999999999999999999999998854 89999999987 578999999999
Q ss_pred HHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH----HHHHHHhhchhh
Q psy13481 172 VALKINPDSAAAY-----------------KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ----ADEWLKEVTPNK 227 (231)
Q Consensus 172 ~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~l~~~~~~~ 227 (231)
+++..+|++..++ +.+|.+|...|++++|+..|+++++.+|++. +...+..+..++
T Consensus 121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence 9999999987654 5789999999999999999999999999853 344455444443
No 93
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.45 E-value=1.8e-12 Score=108.66 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
.+..+..+|.+++..|+|++|+..|+++++++|++..+|+++|.+|..+|+|++|+.+|++++.++|.+..++..+|.++
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHH-HHHHHHHHhc
Q psy13481 192 RLLGKWEEA-AVDLRNACKI 210 (231)
Q Consensus 192 ~~~g~~~~A-~~~~~~al~l 210 (231)
..+|++++| ...|++.+..
T Consensus 275 ~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 999999999 5577777654
No 94
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.44 E-value=1.3e-12 Score=106.84 Aligned_cols=114 Identities=16% Similarity=0.057 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDG-KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
+.....+..+|..+...| ++++|+..|++++..+|++..+|..+|.++...|++++|+..|++++.++|.+..++..+|
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 166 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG 166 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344677888999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV 223 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~ 223 (231)
.++...|++++|+..|++++.++|++. +...+..+
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 202 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 999999999999999999999998753 44444333
No 95
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=4e-12 Score=100.64 Aligned_cols=102 Identities=9% Similarity=-0.015 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..++.++.
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK 220 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCH
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~ 214 (231)
..|++++|...+++++.++|++
T Consensus 221 ~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 221 VFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTS
T ss_pred HccCHHHHHHHHHHHHHHCCCC
Confidence 5555555555555555555554
No 96
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.43 E-value=4.6e-12 Score=108.53 Aligned_cols=107 Identities=29% Similarity=0.402 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSA----LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...|..+...|++++|+..|++++...|++. .++.++|.++.+.|++++|+..|++++.++|+++.+|+.+|.++.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4459999999999999999999999999984 488999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV 223 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~ 223 (231)
..|++++|+..|+++++++|++. +...+..+
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 99999999999999999999854 55555544
No 97
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.43 E-value=2e-12 Score=95.68 Aligned_cols=102 Identities=17% Similarity=0.139 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
+.....+..+|..+...|++++|+..|++++..+|++..+|+++|.++..+|++++|+..|++++.++|.+..++..++.
T Consensus 44 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 123 (166)
T 1a17_A 44 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123 (166)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999998855555
Q ss_pred H--HHHcCCHHHHHHHHHHHHhcC
Q psy13481 190 A--YRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 190 ~--~~~~g~~~~A~~~~~~al~l~ 211 (231)
+ +...|++++|+..+.++..+.
T Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 124 CNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccchHHHh
Confidence 5 888999999999999876553
No 98
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.42 E-value=3.1e-13 Score=92.25 Aligned_cols=90 Identities=19% Similarity=0.233 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL-LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG 195 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g 195 (231)
+..|..++..|++++|+..|++++..+|++.. +|+++|.++..+|++++|+..|++++.++|++..++.+ +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56888999999999999999999999999999 99999999999999999999999999999999988754 5
Q ss_pred CHHHHHHHHHHHHhcCCCH
Q psy13481 196 KWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 196 ~~~~A~~~~~~al~l~p~~ 214 (231)
.+.+++..|+++...+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 6778888888888877764
No 99
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.42 E-value=7.5e-13 Score=99.92 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=89.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HH
Q psy13481 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA-YRLLGKW--EE 199 (231)
Q Consensus 123 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~--~~ 199 (231)
+...|++++|+..|++++..+|++..+|+.+|.++...|++.+|+..|++++.++|.++.+++.+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481 200 AAVDLRNACKIDFDEQ-ADEWLKEVTP 225 (231)
Q Consensus 200 A~~~~~~al~l~p~~~-~~~~l~~~~~ 225 (231)
|+..|++++.++|++. +...+..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~ 126 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAF 126 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999854 4444444443
No 100
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.41 E-value=5.2e-12 Score=103.16 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...++.+|..++..|++++|+..|++++..+|++..+|..+|.++...|++++|+..+++++.++|.+..++..+|.++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCH
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~ 214 (231)
..|++++|+..|++++.++|++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQY 122 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTT
T ss_pred HcCCHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999874
No 101
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=6.6e-12 Score=100.30 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----------
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA---------- 181 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~---------- 181 (231)
....+..+|..+...|++++|+..|++++.++|++..++.++|.++..+|++++|+..|++++.++|.+.
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE 155 (275)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3678889999999999999999999999999999999999999999999999999999999999998874
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHcCCHHHHH
Q psy13481 182 ------------------------------------------------------------AAYKFRGRAYRLLGKWEEAA 201 (231)
Q Consensus 182 ------------------------------------------------------------~~~~~lg~~~~~~g~~~~A~ 201 (231)
.+++.+|.++..+|++++|+
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 56778899999999999999
Q ss_pred HHHHHHHhcCCCH
Q psy13481 202 VDLRNACKIDFDE 214 (231)
Q Consensus 202 ~~~~~al~l~p~~ 214 (231)
..|++++.++|++
T Consensus 236 ~~~~~al~~~p~~ 248 (275)
T 1xnf_A 236 ALFKLAVANNVHN 248 (275)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHHhCCchh
Confidence 9999999999964
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.41 E-value=2.7e-12 Score=114.44 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
....+..+|..+...|++++|+..|+++++++|++..+++++|.++..+|++++|+..|+++++++|.+..++.++|.++
T Consensus 56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHc---CCHHHHHHHHHHHHhcCCCH
Q psy13481 192 RLL---GKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 192 ~~~---g~~~~A~~~~~~al~l~p~~ 214 (231)
..+ |++++|...|+++++.+|++
T Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 136 RRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999 99999999999999999874
No 103
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.41 E-value=1.6e-12 Score=106.42 Aligned_cols=103 Identities=15% Similarity=-0.019 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH--
Q psy13481 112 KSNEKKREAIHAYND-GKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA-- 182 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~-~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~-- 182 (231)
.+..+..+|.++... |++++|+.+|++++.+.|.. ..++.++|.++..+|+|++|+..|++++.+.|.+..
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 366888999999996 99999999999999998754 578999999999999999999999999999987653
Q ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 183 -----AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 183 -----~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+++++|.++..+|++++|+..|++++.++|+.
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68999999999999999999999999999974
No 104
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.40 E-value=5.3e-13 Score=97.60 Aligned_cols=93 Identities=14% Similarity=0.045 Sum_probs=80.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 134 NAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 134 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
..|.+++.++|++...++.+|.+++..|+|.+|+..|++++.++|.++.+|+.+|.++..+|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH-HHHHHHhhchh
Q psy13481 214 EQ-ADEWLKEVTPN 226 (231)
Q Consensus 214 ~~-~~~~l~~~~~~ 226 (231)
+. +...+..+...
T Consensus 85 ~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 85 EPRFPFHAAECHLQ 98 (142)
T ss_dssp CTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 54 44444444433
No 105
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.40 E-value=8.1e-12 Score=102.55 Aligned_cols=111 Identities=11% Similarity=-0.046 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRG--QSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la--~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
.....+..+|..+...|++++|+..|+++++.+|++.......| .++...|++++|+..|++++..+|.++.+++++|
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la 207 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34568888999999999999999999999999999864433333 2333458999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q psy13481 189 RAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLK 221 (231)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~ 221 (231)
.++..+|++++|...|++++.++|++. +...+.
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999864 443333
No 106
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.38 E-value=3e-12 Score=104.89 Aligned_cols=104 Identities=14% Similarity=0.053 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC---
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQL-SKPNACIRDCSVALKINPDS--- 180 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~Ai~~~~~al~~~p~~--- 180 (231)
..+..+..+|.++...|++++|+.+|++++.+.+.. +.++.++|.+|... |++++|+.+|++++.+.|.+
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 447889999999999999999999999999997754 56899999999996 99999999999999998854
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 181 ---AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 181 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
..++.++|.++..+|++++|+..|++++.+.|++
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 5679999999999999999999999999999874
No 107
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.37 E-value=1.4e-11 Score=109.28 Aligned_cols=113 Identities=21% Similarity=0.228 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL------NPSS-ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~------~p~~-~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
+...+..+|..+...|++++|+..|++++.. +|++ ..+|..+|.++.+.|++++|+..|+++++++|.++.+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 3566778888888888999999988888888 6654 78888889999999999999999999998888888899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481 185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT 224 (231)
Q Consensus 185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~ 224 (231)
..+|.+|...|++++|...|+++++++|++. +...+..+.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999999999999999999999999988754 555555443
No 108
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.35 E-value=4.4e-12 Score=91.21 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+.++.++|.++++.|+|++|+.+|+++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 467889999999999999999999999999999999999999999999999999999999999998863
No 109
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.35 E-value=1.4e-11 Score=86.96 Aligned_cols=86 Identities=9% Similarity=0.022 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
++.....+..+|.+++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++..+|.++.+.....
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999998765444
Q ss_pred HHHHHc
Q psy13481 189 RAYRLL 194 (231)
Q Consensus 189 ~~~~~~ 194 (231)
.+....
T Consensus 103 ai~~~~ 108 (117)
T 3k9i_A 103 AILFYA 108 (117)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 444333
No 110
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.34 E-value=8.3e-12 Score=109.16 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
+..+..+|..+...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..|++++.++|.++.++..+|.++.
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 334444444444444444444444444444444 4444444444444444444444444444444444444444444444
Q ss_pred HcCCHHHHHHHHHHHHhcCCC
Q psy13481 193 LLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~ 213 (231)
..|++++|+..|++++.++|+
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHhCCC
Confidence 444444444444444444443
No 111
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=8.5e-12 Score=99.52 Aligned_cols=102 Identities=23% Similarity=0.226 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI---- 176 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~---- 176 (231)
.+..+..+..+|..++..|++++|+..|++++.+ .|....++.++|.++...|++++|+..|++++.+
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3667889999999999999999999999999988 4666889999999999999999999999999998
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 177 ----NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 177 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
+|....++.++|.++..+|++++|+..|++++.+
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999999998
No 112
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.33 E-value=1.1e-11 Score=87.54 Aligned_cols=88 Identities=19% Similarity=0.154 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
+.....+..+|..+...|++++|+..|.+++..+|++..+++.+|.++..+|++++|+..+++++.++|.+..++..+|.
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 122 (131)
T 2vyi_A 43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 33467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCH
Q psy13481 190 AYRLLGKW 197 (231)
Q Consensus 190 ~~~~~g~~ 197 (231)
++..+|++
T Consensus 123 ~~~~~~~~ 130 (131)
T 2vyi_A 123 AELKLREA 130 (131)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhcC
Confidence 99999875
No 113
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.33 E-value=4.8e-13 Score=117.37 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
..++..+..+..+|..+...|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++..++..
T Consensus 34 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 113 (477)
T 1wao_1 34 ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 113 (477)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHH
T ss_pred HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34455688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH--HHHcCCHHHHHHHHH-----------HHHhcCCC
Q psy13481 187 RGRA--YRLLGKWEEAAVDLR-----------NACKIDFD 213 (231)
Q Consensus 187 lg~~--~~~~g~~~~A~~~~~-----------~al~l~p~ 213 (231)
++.+ +...|++++|+..++ +++.++|+
T Consensus 114 l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 114 YQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 9999 889999999999999 88887765
No 114
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.32 E-value=1e-11 Score=92.49 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA-AAYKFR 187 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~-~~~~~l 187 (231)
++..+..+..+|.+++..|+|++|+..+++++.++|+++.+|+++|.+|..+|+|++|+.+|++++.++|++. .+...+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5666789999999999999999999999999999999999999999999999999999999999999999999 677788
Q ss_pred HHHHHHcCCHH
Q psy13481 188 GRAYRLLGKWE 198 (231)
Q Consensus 188 g~~~~~~g~~~ 198 (231)
+.+...++++.
T Consensus 139 ~~~~~~~~~~~ 149 (162)
T 3rkv_A 139 KIVTERRAEKK 149 (162)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88776665443
No 115
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=3.9e-11 Score=103.52 Aligned_cols=103 Identities=15% Similarity=0.048 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL---------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN------ 177 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------ 177 (231)
+..+..+|.++...|++++|+..|++|+++ +|....+|.++|.+|..+|+|++|+.++++++.+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456778999999999999999999999986 67788899999999999999999999999999874
Q ss_pred --CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCHH
Q psy13481 178 --PDSAAAYKFRGRAYRLLG--KWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 178 --p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~ 215 (231)
+..+.++.++|+++...| +|++|+.+|++++.++|++.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 456788999998887765 69999999999999999854
No 116
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.31 E-value=1.7e-11 Score=106.86 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
+..+..+|.+++..|+|++|+..|++++.++|++..+|+++|.+|..+|+|++|+.+|++++.++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHH
Q psy13481 193 LLGKWEEAAVD 203 (231)
Q Consensus 193 ~~g~~~~A~~~ 203 (231)
.+|++++|.+.
T Consensus 397 ~~~~~~~a~~~ 407 (457)
T 1kt0_A 397 KAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 117
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.31 E-value=2.7e-11 Score=107.47 Aligned_cols=105 Identities=15% Similarity=0.126 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
.....+..+|..+...|++++|+..|+++++.+|.+..+|+.+|.+|.+.|++++|+..|++++..+|.+..+|..+|.+
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34667788888999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 191 YRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 191 ~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
|...|++++|+..|++++.++|++.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~~~~ 475 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQYDP 475 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999888743
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.31 E-value=2.2e-12 Score=97.65 Aligned_cols=112 Identities=7% Similarity=-0.077 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...++..|..++..|++++|+..|+++++.+|+++.+|+++|.++...|++++|+..|++++..+| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 345778999999999999999999999999999999999999999999999999999999999999 8887776665533
Q ss_pred -HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481 193 -LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTP 225 (231)
Q Consensus 193 -~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~ 225 (231)
..++...|+..|+++++++|++. +...+..+..
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~ 119 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYN 119 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33344568999999999999854 4444444443
No 119
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.30 E-value=2.8e-12 Score=107.50 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH-HH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA-YR 192 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~-~~ 192 (231)
..+..+|.+++..|+|++|+..|++++.++|++..+|+++|.+|..+|+|++|+.+|++++.++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999998 55
Q ss_pred HcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 193 LLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 193 ~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
..+..+.+...|.+++...|++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCC
Confidence 66788889999999999999865
No 120
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.30 E-value=1.8e-11 Score=94.10 Aligned_cols=97 Identities=10% Similarity=0.075 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
...+..+|.+++..|+|++|+..|++++.++|++..+++++|.++..+|+|++|+..|++++.++|.+..++..++.++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHH-HHHHHHHh
Q psy13481 193 LLGKWEEAA-VDLRNACK 209 (231)
Q Consensus 193 ~~g~~~~A~-~~~~~al~ 209 (231)
.+++..++. ..|.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999988887 44554443
No 121
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=1.2e-11 Score=98.74 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI---- 176 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~---- 176 (231)
.+..+..+..+|..+...|++++|+.+|.+++.+ +|....++.++|.++..+|++++|+..|++++.+
T Consensus 81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3667889999999999999999999999999998 5777899999999999999999999999999999
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 177 ----NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 177 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
.|....++.++|.++..+|++++|+..|++++.+.+
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 677788999999999999999999999999998743
No 122
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.30 E-value=4.1e-11 Score=82.73 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
++.+|+.+|.+++..|+|.+|+..|++++.++|.++.+++++|.++..+|++++|+..|++++.++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 467899999999999999999999999999999999999999999999999999999999999999986
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.29 E-value=2.1e-11 Score=86.77 Aligned_cols=86 Identities=10% Similarity=0.124 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN------PDSAA 182 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------p~~~~ 182 (231)
++.....+..+|.+++..|+|++|+..|+++++++|++..+|+++|.++..+|++++|+.+|++++.++ |.+..
T Consensus 34 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~ 113 (126)
T 3upv_A 34 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 113 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHH
Confidence 344578899999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHc
Q psy13481 183 AYKFRGRAYRLL 194 (231)
Q Consensus 183 ~~~~lg~~~~~~ 194 (231)
++..++.+...+
T Consensus 114 ~~~~l~~~~~~l 125 (126)
T 3upv_A 114 IDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999988887643
No 124
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=2.5e-11 Score=99.96 Aligned_cols=105 Identities=16% Similarity=0.032 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYN-------DGKF-------EDAVNAYSEAIK-LNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~-------~~~~-------~~Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~a 173 (231)
++..+..|+.+|..+.. .|++ ++|+..|++++. ++|++..+|.++|.++...|++++|+..|+++
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44556677777766653 4664 788888888888 68888888888888888888888888888888
Q ss_pred HhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 174 LKINPDSAA-AYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 174 l~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
+.++|.++. +|..+|.++...|++++|...|+++++++|.
T Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 166 (308)
T 2ond_A 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 166 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 888887775 7888888888888888888888888877775
No 125
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.29 E-value=3.2e-11 Score=104.58 Aligned_cols=105 Identities=13% Similarity=0.047 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCChHHHHHHHHHHHhhCCCCH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL------LYAKRGQSYLQ---LSKPNACIRDCSVALKINPDSA 181 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~------~~~~la~~~~~---~~~~~~Ai~~~~~al~~~p~~~ 181 (231)
.....+..+|..+...|++++|+..|++++..+|++.. +++.+|.++.. .|++++|+..|++++.++|++.
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 449 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH
Confidence 34567788899999999999999999999999888754 89999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.+++.+|.++...|++++|...|++++.++|++.
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 9999999999999999999999999999999865
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.28 E-value=3.3e-11 Score=85.52 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
.....+..+|..+...|++++|+..|++++..+|++..+++++|.++..+|++++|+..|++++.++|.+..++..++.+
T Consensus 48 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 127 (133)
T 2lni_A 48 KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127 (133)
T ss_dssp TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCC
Q psy13481 191 YRLLGK 196 (231)
Q Consensus 191 ~~~~g~ 196 (231)
+..+|+
T Consensus 128 ~~~~~~ 133 (133)
T 2lni_A 128 MMAQYN 133 (133)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 988774
No 127
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.28 E-value=1.7e-10 Score=92.76 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 114 NEKKREAIHAYN----DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 114 ~~~~~~a~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
.+++.+|..+.. .+++++|+..|+++++.+ ++.+++++|.+|.. .+++.+|+.+|++++..+ ++.+++
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 114 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCA 114 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHH
Confidence 344445555555 555555555555555443 44555555555555 555555555555555542 455555
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhcC
Q psy13481 186 FRGRAYRL----LGKWEEAAVDLRNACKID 211 (231)
Q Consensus 186 ~lg~~~~~----~g~~~~A~~~~~~al~l~ 211 (231)
++|.+|.. .|++++|+..|+++++++
T Consensus 115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 115 SLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 55555555 555555555555555544
No 128
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.27 E-value=4.3e-11 Score=79.65 Aligned_cols=80 Identities=25% Similarity=0.356 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481 145 SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV 223 (231)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~ 223 (231)
.++.+++.+|.++...|++.+|+..|++++.++|.+..+++.+|.++...|++++|+..|++++.++|++. +...+..+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999754 45444444
Q ss_pred c
Q psy13481 224 T 224 (231)
Q Consensus 224 ~ 224 (231)
.
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.27 E-value=1.6e-10 Score=94.27 Aligned_cols=103 Identities=12% Similarity=0.042 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHH---hhCCCCH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVAL---KINPDSA 181 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al---~~~p~~~ 181 (231)
..+..++..|..+...|++++|+..|++++...+.. ..+++++|.+|..+|+|++|+..|++++ ...|.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence 344556778888899999999999999999875544 6789999999999999999999999999 5556643
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 182 ----AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 182 ----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
.+++++|.+|..+|+|++|+..|++++.+.++
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999988643
No 130
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.27 E-value=1.8e-11 Score=91.35 Aligned_cols=85 Identities=11% Similarity=0.091 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
.++.....++.+|.+++..|+|++|+..|++++.++|++..+|+++|.++..+|++++|+.+|++++.++|++..+|+.+
T Consensus 40 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 40 IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHH
Q psy13481 188 GRAYR 192 (231)
Q Consensus 188 g~~~~ 192 (231)
+.+..
T Consensus 120 ~l~~~ 124 (164)
T 3sz7_A 120 GLETT 124 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 131
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=3.3e-11 Score=99.19 Aligned_cols=103 Identities=10% Similarity=-0.145 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL-LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
....|..+|..+...|++++|+..|++++++.|.+.. +|.++|.++.+.|++++|+..|++++..+|.+..+|...+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 177 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 177 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3566777777777777777777777777777777765 777777777777777777777777766666666555544444
Q ss_pred HHH-cCCHHHHHHHHHHHHhcCCCH
Q psy13481 191 YRL-LGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 191 ~~~-~g~~~~A~~~~~~al~l~p~~ 214 (231)
... .|++++|...|+++++++|++
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~p~~ 202 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKYGDI 202 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 332 566666666666666666653
No 132
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.9e-11 Score=99.14 Aligned_cols=104 Identities=23% Similarity=0.269 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI----- 176 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~----- 176 (231)
+..+..+..+|..+...|++++|+.+|++++.. .|....++..+|.++..+|++++|+..+++++.+
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 666788999999999999999999999999998 7777889999999999999999999999999985
Q ss_pred --------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 177 --------------------------------------------NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 177 --------------------------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
.|..+.++..+|.+|..+|++++|+..|++++++.|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 356678999999999999999999999999999887
Q ss_pred C
Q psy13481 213 D 213 (231)
Q Consensus 213 ~ 213 (231)
+
T Consensus 310 ~ 310 (311)
T 3nf1_A 310 Q 310 (311)
T ss_dssp -
T ss_pred c
Confidence 5
No 133
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.26 E-value=2.3e-11 Score=83.65 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SAAAYKF 186 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~ 186 (231)
+++.+..++.+|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|++++.+.|. +......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 34557889999999999999999999999999999999999999999999999999999999999998764 4444455
Q ss_pred HHHHHHHc
Q psy13481 187 RGRAYRLL 194 (231)
Q Consensus 187 lg~~~~~~ 194 (231)
+..++...
T Consensus 83 l~~~l~~~ 90 (100)
T 3ma5_A 83 LQDAKLKA 90 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 55544443
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=4.6e-11 Score=106.90 Aligned_cols=124 Identities=10% Similarity=0.042 Sum_probs=111.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHH
Q psy13481 104 EVSEEDIDKSNEKKREAIHAYNDGK----------FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS--KPNACIRDCS 171 (231)
Q Consensus 104 ~~~~~~~~~a~~~~~~a~~~~~~~~----------~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~Ai~~~~ 171 (231)
.+...+++...+|..++.++...|+ +++|+..+++++..+|++..+|+.|+-++.+++ ++.+++.+++
T Consensus 54 ~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~ 133 (567)
T 1dce_A 54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 133 (567)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 3344567778999999999999888 999999999999999999999999999999999 6699999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCH-HHHHHHHhhchhh
Q psy13481 172 VALKINPDSAAAYKFRGRAYRLLG-KWEEAAVDLRNACKIDFDE-QADEWLKEVTPNK 227 (231)
Q Consensus 172 ~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~-~~~~~l~~~~~~~ 227 (231)
++++++|+|..+|+.+|.++..+| .++++++++.++++.+|++ +++.....+..++
T Consensus 134 k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 134 RFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 999999999999999999999999 9999999999999999974 4777766665554
No 135
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.26 E-value=7e-11 Score=97.77 Aligned_cols=121 Identities=10% Similarity=-0.060 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CChHHHHHHHHHHHhh
Q psy13481 106 SEEDIDKSNEKKREAIHAYNDG--KFEDAVNAYSEAIKLNPSSALLYAKRGQSY----LQL---SKPNACIRDCSVALKI 176 (231)
Q Consensus 106 ~~~~~~~a~~~~~~a~~~~~~~--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~----~~~---~~~~~Ai~~~~~al~~ 176 (231)
..-+++...+|..++.++...+ ++++++..++.++..+|.+..+|+.|+.++ ..+ +++.+++..+++++++
T Consensus 60 L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~ 139 (306)
T 3dra_A 60 INELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS 139 (306)
T ss_dssp HHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh
Confidence 3445667889999999999999 999999999999999999999999999999 777 7899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCH-HHHHHHHhhchh
Q psy13481 177 NPDSAAAYKFRGRAYRLLGKWE--EAAVDLRNACKIDFDE-QADEWLKEVTPN 226 (231)
Q Consensus 177 ~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~l~p~~-~~~~~l~~~~~~ 226 (231)
+|.|..+|+.++.++..+|.++ +++.++.+++.++|.+ .++.....+...
T Consensus 140 ~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 140 DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS 192 (306)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999998 9999999999999974 365555444443
No 136
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.25 E-value=6.4e-11 Score=100.55 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
..+..+..+..+|.+++..|+|++|+.+|+++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|.+..++..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHH
Q psy13481 188 GRAYRLLGKWEEAAVD 203 (231)
Q Consensus 188 g~~~~~~g~~~~A~~~ 203 (231)
+.++..+++++++.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887654
No 137
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.25 E-value=6.7e-11 Score=97.89 Aligned_cols=121 Identities=6% Similarity=-0.065 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhhCC
Q psy13481 108 EDIDKSNEKKREAIHA----YND---GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPN--ACIRDCSVALKINP 178 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~----~~~---~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~Ai~~~~~al~~~p 178 (231)
.++....+|..++.++ ... +++.+++.++++++..+|.+..+|+.|+.++..+|+++ +++..++++++++|
T Consensus 98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 4455567888888888 666 89999999999999999999999999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCH-HHHHHHHhhchhhh
Q psy13481 179 DSAAAYKFRGRAYRLLGK------WEEAAVDLRNACKIDFDE-QADEWLKEVTPNKL 228 (231)
Q Consensus 179 ~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~l~p~~-~~~~~l~~~~~~~~ 228 (231)
.|..+|+.++.+...+|. +++++.++.+++.++|++ +++..+..+..++.
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD 234 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 999999999999999998 999999999999999975 47777777766554
No 138
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.25 E-value=1.1e-11 Score=92.26 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------ChHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKF----------EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS-----------KPNA 165 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~----------~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~~ 165 (231)
..++.++..|+.+|.++...+++ ++|+..|+++|+++|++..+|+++|.+|..+| +|++
T Consensus 30 ~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~e 109 (158)
T 1zu2_A 30 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDL 109 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHH
Confidence 44566789999999999998875 59999999999999999999999999999885 8999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHH
Q psy13481 166 CIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 166 Ai~~~~~al~~~p~~~~~~~~l 187 (231)
|+.+|++|++++|++...+..+
T Consensus 110 A~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 110 ATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999987554443
No 139
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.24 E-value=4.2e-11 Score=98.65 Aligned_cols=101 Identities=11% Similarity=-0.018 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---- 180 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---- 180 (231)
..+..+..+|.++.. |++++|+.+|++++.+.+.. ..++.++|.+|..+|+|++|+..|++++.+.|.+
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence 346788899999988 99999999999999987654 6789999999999999999999999999987644
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 181 --AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 181 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
..++..+|.++..+|++++|+..|++++ ++|+
T Consensus 193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 3478899999999999999999999999 9986
No 140
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.23 E-value=3.3e-11 Score=98.43 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL-------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---- 180 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---- 180 (231)
.+..+..+|.++...|+|++|+.+|++++.. .+....+++++|.+|..+|+|++|+..+++++.+.+..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 3567899999999999999999999999953 22235689999999999999999999999999987544
Q ss_pred --HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC
Q psy13481 181 --AAAYKFRGRAYRLLG-KWEEAAVDLRNACKID 211 (231)
Q Consensus 181 --~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~ 211 (231)
+.+++++|.++..+| ++++|+..|++|+.+.
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 789999999999999 5799999999999874
No 141
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.23 E-value=5.5e-11 Score=86.67 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS--- 180 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~--- 180 (231)
...+..+..+|..++..|++++|+.+|++++.+.+.. ..++.++|.++...|++++|+..+++++.+.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 4457788999999999999999999999999886543 2588999999999999999999999999887543
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 181 ---AAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 181 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
..+++++|.++..+|++++|+..+++++.+.
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999874
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.23 E-value=1.2e-10 Score=83.55 Aligned_cols=86 Identities=22% Similarity=0.187 Sum_probs=75.2
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHH
Q psy13481 141 KLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEW 219 (231)
Q Consensus 141 ~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~ 219 (231)
..+|.++..|+.+|.+++..|+|.+|+..|++++.++|.++.+|+++|.++..+|++++|+..|++++.++|++. +...
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 457788999999999999999999999999999999999999999999999999999999999999999999854 5555
Q ss_pred HHhhchh
Q psy13481 220 LKEVTPN 226 (231)
Q Consensus 220 l~~~~~~ 226 (231)
+..+...
T Consensus 83 l~~~~~~ 89 (137)
T 3q49_B 83 LGQCQLE 89 (137)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554433
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=3.6e-11 Score=107.56 Aligned_cols=121 Identities=9% Similarity=-0.003 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDG--KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS-KPNACIRDCSVALKINPDSAAA 183 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~ 183 (231)
..++....+|..++.++...+ +|++|++.++++++.+|.+..+|+.|+.++..+| .+++++.++.++|+.+|.|..+
T Consensus 101 ~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence 455666889999999999999 7899999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481 184 YKFRGRAYRLL--------------GKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK 227 (231)
Q Consensus 184 ~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~ 227 (231)
|+.+|.++..+ +.++++++++.+|+.++|++. ++..++-+....
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence 99999999986 668999999999999999854 777777666543
No 144
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=4.4e-11 Score=96.89 Aligned_cols=106 Identities=23% Similarity=0.196 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-
Q psy13481 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI- 176 (231)
Q Consensus 106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~- 176 (231)
...++..+..+..+|..++..|++++|+.+|++++.+ .|....++..+|.++...|++++|+..+++++.+
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3455677899999999999999999999999999995 6777899999999999999999999999999988
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 177 -------NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 177 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
.|....++..+|.++..+|++++|+..|++++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 141 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 141 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 35567899999999999999999999999999884
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.22 E-value=5.1e-11 Score=81.83 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=76.3
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--HH-HHH
Q psy13481 142 LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD--EQ-ADE 218 (231)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~-~~~ 218 (231)
++|++..+|+.+|.++...|++.+|+..|++++.++|.+..+++.+|.++..+|++++|+..|+++++++|+ +. +..
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368889999999999999999999999999999999999999999999999999999999999999999998 53 455
Q ss_pred HHHhhchhh
Q psy13481 219 WLKEVTPNK 227 (231)
Q Consensus 219 ~l~~~~~~~ 227 (231)
.+..+...+
T Consensus 81 ~l~~~~~~~ 89 (112)
T 2kck_A 81 AKADALRYI 89 (112)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHH
Confidence 555444433
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.22 E-value=7.4e-11 Score=96.37 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAI---KLNPSSA----LLYAKRGQSYLQLSKPNACIRDCSVALKINPD----- 179 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al---~~~p~~~----~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~----- 179 (231)
.+..+..+|..+...|+|++|+.+|++++ ...|++. .+++++|.+|..+|+|++|+..+++++.+.+.
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 36788999999999999999999999999 5566642 68999999999999999999999999988643
Q ss_pred -CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q psy13481 180 -SAAAYKFRGRAYRLLGKWEEA-AVDLRNACKID 211 (231)
Q Consensus 180 -~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~l~ 211 (231)
.+.+++++|.+|..+|++++| ..+|++|+.+.
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 277999999999999999999 78899998764
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.22 E-value=1.8e-10 Score=80.38 Aligned_cols=84 Identities=23% Similarity=0.401 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
....+..+|..+...|++++|+..|++++..+|.+..+++.+|.++...|++++|+..+++++.++|.+..++..+|.++
T Consensus 42 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHcC
Q psy13481 192 RLLG 195 (231)
Q Consensus 192 ~~~g 195 (231)
...|
T Consensus 122 ~~~g 125 (125)
T 1na0_A 122 QKQG 125 (125)
T ss_dssp HHHC
T ss_pred Hhcc
Confidence 8765
No 148
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.22 E-value=1.1e-10 Score=98.84 Aligned_cols=103 Identities=18% Similarity=0.276 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhh------CC
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA----LLYAKRGQSYLQLSKPNACIRDCSVALKI------NP 178 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~Ai~~~~~al~~------~p 178 (231)
.+..+..+...|..++..|++++|+..|++++...|++. .+|+.+|.++...|++++|+..|++++.+ .+
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 356688889999999999999999999999999999986 58999999999999999999999999998 56
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 179 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
....+++.+|.+|..+|++++|+..|++++.+.
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999984
No 149
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.21 E-value=1.3e-10 Score=82.74 Aligned_cols=79 Identities=18% Similarity=0.100 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN 226 (231)
Q Consensus 148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~ 226 (231)
..++.+|.+++..|++.+|+..|++++.++|+++.+|+.+|.++..+|++++|+..|+++++++|++. +...+..+...
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999854 44445444433
No 150
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.21 E-value=2e-11 Score=91.06 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL-------NPSSALLY----AKRGQSYLQLSKPNACIRDCSVALKINP 178 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-------~p~~~~~~----~~la~~~~~~~~~~~Ai~~~~~al~~~p 178 (231)
+..+..|..+|.++...|+|++|+..|+++|++ +|+++.+| +++|.++..+|+|++|+.+|+++++++|
T Consensus 54 ~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 345679999999999999999999999999999 99999999 9999999999999999999999999999
Q ss_pred CCHHHHHHHHHH
Q psy13481 179 DSAAAYKFRGRA 190 (231)
Q Consensus 179 ~~~~~~~~lg~~ 190 (231)
.+..++..+..+
T Consensus 134 ~d~~~~~~~~~~ 145 (159)
T 2hr2_A 134 ERKGETPGKERM 145 (159)
T ss_dssp HCCSCCTTHHHH
T ss_pred CcHHHHHHHHHH
Confidence 887665554444
No 151
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=1.1e-10 Score=98.71 Aligned_cols=104 Identities=16% Similarity=0.093 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----hC
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALK-----IN 177 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~-----~~ 177 (231)
.+..+..+..+|..+...|+|++|+.+|++++.+.+.. +.+++++|.+|..+|++++|+.++++++. .+
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 45567888999999999999999999999999885533 36899999999999999999999999999 46
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 178 -PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 178 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
|..+.+++++|.++..+|++++|...|++++.+.+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999853
No 152
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.20 E-value=1.3e-10 Score=98.11 Aligned_cols=102 Identities=12% Similarity=0.055 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-------SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~ 181 (231)
....+..+..+|..+...|++++|+.+|++++.+.+. .+.++.++|.+|..+|+|++|+..|++++.+.+...
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 218 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence 4557889999999999999999999999999998443 356899999999999999999999999998865432
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 182 ------AAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 182 ------~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
.+++++|.+|..+|++++|+..|++++.+
T Consensus 219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999994
No 153
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=8.5e-11 Score=101.40 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------------------CChHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL-------------------SKPNACIRD 169 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-------------------~~~~~Ai~~ 169 (231)
++.....+..+|..+...|++++|+..|+++++.+|+++.+++++|.+|... +.+..|+..
T Consensus 243 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 3445677889999999999999999999999999999999999999988653 346789999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 170 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+++++.++|.+..+++.+|.++..+|++++|+..|++++.++|++.
T Consensus 323 ~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp HHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 9999999999999999999999999999999999999999998754
No 154
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.19 E-value=2e-10 Score=83.58 Aligned_cols=101 Identities=21% Similarity=0.151 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD------ 179 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~------ 179 (231)
.+..+..+|..+...|++++|+.+|++++.+.+.. ..++.++|.++...|++++|+..+++++.+.+.
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 127 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 127 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence 35688899999999999999999999999986543 678999999999999999999999999987532
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 180 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
...++..+|.++..+|++++|...+++++.+..
T Consensus 128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 256889999999999999999999999998754
No 155
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.19 E-value=1.3e-10 Score=94.60 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----ALLYAKRGQSYLQLSKPNACIRDCSVALKI------NPDSA 181 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~------~p~~~ 181 (231)
....++..|..++..|++++|+..|++++...|++ ..++..+|.++...|++++|+..+++++.+ .+...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 45678899999999999999999999999999998 578899999999999999999999999988 44557
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
.++..+|.++..+|++++|+..|++++.+.+.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 115 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999988653
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.18 E-value=3.4e-10 Score=94.47 Aligned_cols=118 Identities=9% Similarity=-0.002 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDG--KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK-PNACIRDCSVALKINPDSAAA 183 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~Ai~~~~~al~~~p~~~~~ 183 (231)
..++....+|..++.++...+ .+++++.++.+++..+|.+..+|+.++.++...|. +.+++.++.++|+.+|.|..+
T Consensus 102 ~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SA 181 (331)
T 3dss_A 102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 181 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHH
Confidence 345666889999999999988 49999999999999999999999999999999999 599999999999999999999
Q ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481 184 YKFRGRAYRLL--------------GKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT 224 (231)
Q Consensus 184 ~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~ 224 (231)
|+.++.++..+ +.+++++.++.+++.++|++. ++..++-+.
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999988 569999999999999999865 665555443
No 157
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.17 E-value=1.3e-10 Score=97.56 Aligned_cols=101 Identities=19% Similarity=0.286 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----ALLYAKRGQSYLQLSKPNACIRDCSVALKI------NPDSAA 182 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~------~p~~~~ 182 (231)
+..+...|..++..|++++|+..|++++...|++ ..++..+|.+++..|+|.+|+..+++++.+ .|....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 5678899999999999999999999999999998 468999999999999999999999999988 345577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
++..+|.++..+|++++|+..|++++.+.|.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998764
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.17 E-value=3e-10 Score=78.46 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~ 190 (231)
.....+..+|..+...|++++|+..|++++..+|++..+++++|.++..+|++++|+..+++++.++|.+..++..++.+
T Consensus 36 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 36 HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred H
Q psy13481 191 Y 191 (231)
Q Consensus 191 ~ 191 (231)
.
T Consensus 116 ~ 116 (118)
T 1elw_A 116 E 116 (118)
T ss_dssp H
T ss_pred h
Confidence 5
No 159
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.17 E-value=3.1e-10 Score=77.30 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 143 NPSSALLYAKRGQSYLQLSK---PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~---~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+|+++..+..+|.+++..++ ..+|...+++++.++|+++.+++.+|..++..|+|++|+..|++++..+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68899999999999987776 7999999999999999999999999999999999999999999999999984
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.17 E-value=1.5e-10 Score=88.30 Aligned_cols=99 Identities=10% Similarity=-0.001 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCCC--
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI---NPDS-- 180 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~---~p~~-- 180 (231)
.+..+..+|..+...|++++|+.+|++++.+ .+....++.++|.++...|++++|+..+++++.+ .+++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 3566777777888888888888888887773 3344667777888888888888888888887777 3322
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 181 --AAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 181 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
..+++++|.++..+|++++|+..+++++.+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346777788888888888888888777765
No 161
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=1.2e-10 Score=95.22 Aligned_cols=103 Identities=14% Similarity=0.041 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHH----------------------------------HHHHHHHHhCCCCHHHHHH
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAV----------------------------------NAYSEAIKLNPSSALLYAK 152 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai----------------------------------~~~~~al~~~p~~~~~~~~ 152 (231)
..+++....+..+|..+...|++++|+ ..|++++..+|++..++++
T Consensus 145 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~ 224 (287)
T 3qou_A 145 QLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQ 224 (287)
T ss_dssp HHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHH
Confidence 445555666677777777777666654 5566668889999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 153 RGQSYLQLSKPNACIRDCSVALKINPDS--AAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 153 la~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
+|.++...|++++|+..|.+++..+|++ ..++.++|.++..+|+.++|...|++++.
T Consensus 225 la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 225 LALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999998 89999999999999999999999999875
No 162
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.16 E-value=5.7e-11 Score=97.89 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS------SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---- 180 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---- 180 (231)
..+..+...|.++...|++++|+.+|++++.+.+. ...++.++|.+|.. |+|++|+.+|++++.+.+..
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~ 152 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR 152 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence 44678889999999999999999999999998543 25789999999999 99999999999999998754
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 181 --AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 181 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
..++.++|.+|..+|+|++|+..|++++.+.|+
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998654
No 163
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.16 E-value=2.5e-10 Score=77.52 Aligned_cols=66 Identities=23% Similarity=0.383 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAA-AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 150 ~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.+++|.+++..|+|.+|+..|++++..+|.++. +++++|.++..+|++++|+..|+++++++|++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 357899999999999999999999999999999 999999999999999999999999999999854
No 164
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.16 E-value=2.7e-10 Score=92.79 Aligned_cols=111 Identities=14% Similarity=-0.016 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CC-CHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNACIRDCSVALKIN--PD-SAAA 183 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--p~-~~~~ 183 (231)
.+... ..+.+|..++..++|++|+..|++++...+.. ..+++++|.++..+|++.+|+.+|++++... |. .+.+
T Consensus 132 ~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da 210 (282)
T 4f3v_A 132 GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAI 210 (282)
T ss_dssp TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHH
T ss_pred CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHH
Confidence 34556 88999999999999999999999887653221 4589999999999999999999999999655 55 6679
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHH
Q psy13481 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWL 220 (231)
Q Consensus 184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l 220 (231)
++.+|.|+..+|+.++|...|++++..+|+..+...+
T Consensus 211 ~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 211 AWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999999999999999999999993344433
No 165
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.16 E-value=2.8e-10 Score=96.11 Aligned_cols=103 Identities=12% Similarity=-0.038 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----hCC
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP------SSALLYAKRGQSYLQLSKPNACIRDCSVALK-----INP 178 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~-----~~p 178 (231)
...+..+..+|..+...|+|++|+.+|++++.+.+ ..+.++.++|.+|..+|++++|+..+++++. .+|
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 35678889999999999999999999999999743 1256899999999999999999999999999 778
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 179 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
..+.+++++|.++..+|++++|+..+++++.+.+
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999854
No 166
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.15 E-value=2.2e-09 Score=86.18 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481 113 SNEKKREAIHAYN----DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 113 a~~~~~~a~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
...++.+|..+.. .+++++|+..|++++..+ ++.+++++|.+|.. .+++++|+.+|+++++.+ +..++
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~ 149 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHH
Confidence 4555566666666 666666666666666553 56666666666666 666666666666666654 55566
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q psy13481 185 KFRGRAYRL----LGKWEEAAVDLRNACKID 211 (231)
Q Consensus 185 ~~lg~~~~~----~g~~~~A~~~~~~al~l~ 211 (231)
+++|.+|.. .+++++|+..|+++++.+
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 180 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK 180 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 666666666 666666666666666654
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.15 E-value=4e-11 Score=97.82 Aligned_cols=105 Identities=13% Similarity=0.072 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-----HH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA-----AA 183 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~-----~~ 183 (231)
++.....+..+|..+...|++++|+..|+++++++|++..+++++|.++..+|++++|+..|++++.++|++. .+
T Consensus 34 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 113 (281)
T 2c2l_A 34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113 (281)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHH
Confidence 3445788999999999999999999999999999999999999999999999999999999999999998652 11
Q ss_pred H--------------------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 184 Y--------------------------KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 184 ~--------------------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+ ..++. ...|++++|++.|+++++++|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 114 PSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRNHEGHEDDG 169 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGGGTTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhhhccccchh
Confidence 1 11222 246899999999999999999853
No 168
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.15 E-value=5.8e-10 Score=93.05 Aligned_cols=119 Identities=10% Similarity=0.036 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhh
Q psy13481 109 DIDKSNEKKREAIHAYNDGK----------FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK--PNACIRDCSVALKI 176 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~----------~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~Ai~~~~~al~~ 176 (231)
+|+...+|..++.++...+. +.+++.+++.++..+|.+..+|+.|+.++..+++ +.+++.++.+++++
T Consensus 60 nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~ 139 (331)
T 3dss_A 60 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 139 (331)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh
Confidence 34446788888888876665 7899999999999999999999999999999995 89999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCH-HHHHHHHhhchhh
Q psy13481 177 NPDSAAAYKFRGRAYRLLGK-WEEAAVDLRNACKIDFDE-QADEWLKEVTPNK 227 (231)
Q Consensus 177 ~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~-~~~~~l~~~~~~~ 227 (231)
+|.|..+|+.++.+....|. +++++.++.+++..+|.+ +++.....+...+
T Consensus 140 dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 140 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999 699999999999999974 4776666665554
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.14 E-value=1.1e-09 Score=77.47 Aligned_cols=84 Identities=18% Similarity=0.063 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
...++.+|..++..|+|++|+..|++++..+|++ +.+++.+|.++..+|++++|+..|++++..+|++..+...+..
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 3688899999999999999999999999999999 8999999999999999999999999999999999988777766
Q ss_pred HHHHcCC
Q psy13481 190 AYRLLGK 196 (231)
Q Consensus 190 ~~~~~g~ 196 (231)
+....++
T Consensus 119 l~~l~~~ 125 (129)
T 2xev_A 119 LQSIRLG 125 (129)
T ss_dssp HHHHC--
T ss_pred HHHHHhh
Confidence 6655544
No 170
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.13 E-value=3.5e-10 Score=94.90 Aligned_cols=116 Identities=12% Similarity=0.035 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDG-KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL-S-KPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-~-~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
+++...+|..++.++...| ++++++..++.++..+|++..+|+.|+.++..+ + ++.+++..+.++++++|.|..+|+
T Consensus 84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~ 163 (349)
T 3q7a_A 84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA 163 (349)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 3444555666666666666 366666666666666666666666666666665 5 566666666666666666666666
Q ss_pred HHHHHHHHcCCHH--------HHHHHHHHHHhcCCCH-HHHHHHHhhc
Q psy13481 186 FRGRAYRLLGKWE--------EAAVDLRNACKIDFDE-QADEWLKEVT 224 (231)
Q Consensus 186 ~lg~~~~~~g~~~--------~A~~~~~~al~l~p~~-~~~~~l~~~~ 224 (231)
.++.+...+|.++ +++.++.+++..+|.| .++.....+.
T Consensus 164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6666666666555 6666666666666643 2444444443
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=7.9e-10 Score=79.83 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
....+..+|..+...|++++|+..|++++..+|++..+|+++|.++..+|++++|+..|++++.++|.+..++..++.+.
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999998888775
Q ss_pred HH
Q psy13481 192 RL 193 (231)
Q Consensus 192 ~~ 193 (231)
..
T Consensus 144 ~~ 145 (148)
T 2dba_A 144 GP 145 (148)
T ss_dssp CS
T ss_pred hh
Confidence 43
No 172
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.13 E-value=2.3e-10 Score=80.10 Aligned_cols=85 Identities=12% Similarity=0.093 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SAAAYKFRG 188 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~lg 188 (231)
.....++.+|..++..|++++|+..|++++.++|++..+|+++|.++..+|++++|+..|++++.++|. +..+...+.
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~ 96 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQ 96 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999999999999874 445555555
Q ss_pred HHHHHcC
Q psy13481 189 RAYRLLG 195 (231)
Q Consensus 189 ~~~~~~g 195 (231)
..+..+|
T Consensus 97 ~~l~~l~ 103 (115)
T 2kat_A 97 VFLRRLA 103 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5554443
No 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.12 E-value=2.2e-10 Score=87.40 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--C
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL---NPS----SALLYAKRGQSYLQLSKPNACIRDCSVALKINP--D 179 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~---~p~----~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p--~ 179 (231)
.+..+..+..+|..+...|++++|+..|++++.+ .++ ...++.++|.++..+|++++|+..+++++.+.+ .
T Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 4556788999999999999999999999999998 442 356799999999999999999999999997743 2
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 180 S----AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 180 ~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
+ ..++.++|.++..+|++++|...|++++.+..
T Consensus 142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 2 23568999999999999999999999998754
No 174
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.12 E-value=6.3e-10 Score=82.05 Aligned_cols=100 Identities=9% Similarity=-0.028 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q psy13481 129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS---KPNACIRDCSVALKIN-P-DSAAAYKFRGRAYRLLGKWEEAAVD 203 (231)
Q Consensus 129 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~Ai~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~ 203 (231)
...+...|.+.+..++.+..+.+++|.++.+.+ +..+++..++.++..+ | ++..++|++|..|+.+|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456677788888888999999999999999999 6679999999999998 7 6688999999999999999999999
Q ss_pred HHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481 204 LRNACKIDFDEQ-ADEWLKEVTPNKL 228 (231)
Q Consensus 204 ~~~al~l~p~~~-~~~~l~~~~~~~~ 228 (231)
+.++++++|++. +....+.+..++.
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999875 6666666665554
No 175
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.09 E-value=6.4e-09 Score=87.25 Aligned_cols=109 Identities=13% Similarity=-0.004 Sum_probs=94.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C-
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS-KPNACIRDCSVALKINPDSAAAYKFRGRAYRLL-G- 195 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~-g- 195 (231)
........+..++|+..++++|.++|++..+|+.|+.++..+| .+.+++..+++++..+|.+..+|+.++.++..+ +
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence 3334445566679999999999999999999999999999999 599999999999999999999999999999998 8
Q ss_pred CHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481 196 KWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK 227 (231)
Q Consensus 196 ~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~ 227 (231)
++++++.++.+++.++|.+. ++....-+..++
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l 172 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHF 172 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999854 555544444433
No 176
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.09 E-value=5.6e-10 Score=91.09 Aligned_cols=100 Identities=12% Similarity=0.025 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CC
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN-------PD 179 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-------p~ 179 (231)
+..+...|..+...+++++|+.+|++++...+.. ..+++++|.+|..+|+|++|+..|++++.+. +.
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 3445568888899999999999999999974432 4479999999999999999999999999532 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 180 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
...+++++|.+|..+|+|++|+..+++++.+.+
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999998864
No 177
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.08 E-value=3.8e-10 Score=94.77 Aligned_cols=97 Identities=22% Similarity=0.165 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------H
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS------A 181 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------~ 181 (231)
..+..+|..+...|++++|+.+|++++.+.+.. ..++.++|.++...|++++|+..+++++.+.+.. .
T Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 307 (406)
T 3sf4_A 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 307 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 355555666666666666666666666554443 4555566666666666666666666666554332 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
.++..+|.+|..+|++++|+..|++++.+
T Consensus 308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 308 RACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45556666666666666666666666655
No 178
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.08 E-value=4.3e-09 Score=88.48 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHH---------------------------------
Q psy13481 113 SNEKKREAIHAYNDGK---FEDAVNAYSEAIKLNPSSALLYAKRGQS--------------------------------- 156 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~---~~~Ai~~~~~al~~~p~~~~~~~~la~~--------------------------------- 156 (231)
+..++.+|..++..++ +.+|+.+|++|++++|+++.+|..++.+
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 5667788888876654 5789999999999999998877754443
Q ss_pred -----------HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481 157 -----------YLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223 (231)
Q Consensus 157 -----------~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~ 223 (231)
+...|++++|+..+++|+.++| +..+|..+|.++...|++++|+..|.+|+.++|......|...+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l 352 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENG 352 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCc
Confidence 3447899999999999999997 57788999999999999999999999999999998877776654
No 179
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=1.5e-09 Score=91.56 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-------SALLYAKRGQSYLQLSKPNACIRDCSVALKINPD-- 179 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~-- 179 (231)
.+..+..++.+|..+...|++..|+.++++++.+.+. .+.+++++|.++..+|+|++|+..|++++.+.+.
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 4566788888999999999999999999999887442 2567888999999999999999999999887431
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 180 ----SAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 180 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
...+++++|.+|..+|++++|+..|++++.
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 245788899999999999999999999998
No 180
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.07 E-value=2.4e-10 Score=96.76 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA------LLYAKRGQSYLQLSKPNACIRDCSVALKINPDS--- 180 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~--- 180 (231)
...+..+..+|..++..|++++|+.+|++++.+.+... .++.++|.++..+|++++|+..|++++.+.+..
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 34456788889999999999999999999998876543 388899999999999999999999999888754
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 181 ---AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 181 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
..++..+|.++..+|++++|+..|++++.+.+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999887653
No 181
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.07 E-value=2e-09 Score=83.95 Aligned_cols=97 Identities=12% Similarity=-0.027 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS----KPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
++.+++.+|..+...+++++|+..|+++++. .++.+++++|.+|.. + ++.+|+.+|+++++ +.++.+++++
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~L 91 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVL 91 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHH
Confidence 3566777777777777777777777777664 467777777777776 5 67777777777754 4567777777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcCCC
Q psy13481 188 GRAYRL----LGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 188 g~~~~~----~g~~~~A~~~~~~al~l~p~ 213 (231)
|.+|.. .+++++|+.+|++++...+.
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 121 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDSES 121 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence 777766 67777777777777777763
No 182
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=1.4e-09 Score=84.78 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCH
Q psy13481 112 KSNEKKREAIHAYN----DGKFEDAVNAYSEAIKLNP--SSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSA 181 (231)
Q Consensus 112 ~a~~~~~~a~~~~~----~~~~~~Ai~~~~~al~~~p--~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~ 181 (231)
.+.+++.+|..+.. .+++.+|+..|+++++..+ .++.+++++|.+|.. .+++.+|+.+|++++++ +.++
T Consensus 84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~ 162 (212)
T 3rjv_A 84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTG 162 (212)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTT
T ss_pred CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCH
Confidence 44556666666665 6677777777777776666 236777777777777 66777777777777776 5566
Q ss_pred HHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481 182 AAYKFRGRAYRLL-G-----KWEEAAVDLRNACKIDFDEQADEWLKEV 223 (231)
Q Consensus 182 ~~~~~lg~~~~~~-g-----~~~~A~~~~~~al~l~p~~~~~~~l~~~ 223 (231)
.+++++|.+|..- | ++++|+.+|+++++.... .+...+..+
T Consensus 163 ~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~-~A~~~l~~l 209 (212)
T 3rjv_A 163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD-TGCEEFDRI 209 (212)
T ss_dssp HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHh
Confidence 6777777776654 2 677777777777776542 234444443
No 183
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.05 E-value=1e-09 Score=89.16 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS------SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-- 180 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~-- 180 (231)
.+..+..+..+|..+...|++++|+..|++++.+.+. ...++.++|.++...|++++|+..+++++.+.+..
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 5566778888888888888888888888888877432 25578888888888888888888888888877655
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 181 ----AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 181 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
..++..+|.++..+|++++|+..|++++.+.+.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 668888888888888888888888888887543
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.03 E-value=1.2e-09 Score=96.07 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CC
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-----PD 179 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-----p~ 179 (231)
+......+..+..+|+|++|+..|++++++ +|+.+..+.++|.+|..+|+|++|+..+++++.+. |+
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 445556677788999999999999999987 44457889999999999999999999999999874 55
Q ss_pred CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 180 SA---AAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 180 ~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
|+ ..++++|.+|..+|+|++|+..|++|+.+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 65 57899999999999999999999999986
No 185
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.98 E-value=9.6e-09 Score=71.07 Aligned_cols=78 Identities=9% Similarity=0.015 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLN-------PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
+..++.+|..++..++|..|+..|++|++.. +....++..+|.+++++|++..|+..+++++.++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4667889999999999999999999999863 345788999999999999999999999999999999999988
Q ss_pred HHHHH
Q psy13481 186 FRGRA 190 (231)
Q Consensus 186 ~lg~~ 190 (231)
+++..
T Consensus 85 n~~~~ 89 (104)
T 2v5f_A 85 NLKYF 89 (104)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 88743
No 186
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.98 E-value=1.7e-09 Score=93.66 Aligned_cols=97 Identities=14% Similarity=0.018 Sum_probs=82.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCCH---H
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-----PDSA---A 182 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-----p~~~---~ 182 (231)
.+......|+|++|+..|++++++ +|..+..+.++|.+|..+|+|++|+..+++++.+. |+|+ .
T Consensus 304 ~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 304 EFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 344444578999999999999986 33446789999999999999999999999999773 5555 5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCHH
Q psy13481 183 AYKFRGRAYRLLGKWEEAAVDLRNACKI-----DFDEQ 215 (231)
Q Consensus 183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~ 215 (231)
.++++|.+|..+|+|++|+..|++|+++ .|++.
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 7899999999999999999999999986 46654
No 187
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.97 E-value=1.4e-09 Score=76.54 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
....+..+|..+...|++++|+..|++++...|++ ..+++++|.++...|++++|+..|++++.+.| +...+
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 115 (131)
T 1elr_A 37 NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVL 115 (131)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHH
Confidence 46778899999999999999999999999998877 99999999999999999999999999999999 68888
Q ss_pred HHHHHHHHHcC
Q psy13481 185 KFRGRAYRLLG 195 (231)
Q Consensus 185 ~~lg~~~~~~g 195 (231)
..++.+...++
T Consensus 116 ~~l~~~~~~~~ 126 (131)
T 1elr_A 116 KKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888876554
No 188
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.96 E-value=3.9e-09 Score=93.06 Aligned_cols=106 Identities=16% Similarity=0.014 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYN-------DGKFE-------DAVNAYSEAIK-LNPSSALLYAKRGQSYLQLSKPNACIRDCSV 172 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~-------~~~~~-------~Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~ 172 (231)
..+.....|...|..+.. .|+++ +|+..|+++++ ++|++..+|..+|.++...|++++|+..|++
T Consensus 267 ~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 345567888888888876 78987 89999999997 8999999999999999999999999999999
Q ss_pred HHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 173 ALKINPDSA-AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 173 al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
++.++|.++ .+|..+|.++...|++++|...|++|++..|.
T Consensus 347 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 347 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 388 (530)
T ss_dssp HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 999999985 68999999988888999999999999888775
No 189
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.92 E-value=6.5e-09 Score=91.65 Aligned_cols=105 Identities=11% Similarity=-0.102 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA-LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
++....+..+|..+...|++++|...|++++++.|.++ .+|.++|.++.+.|++++|+..|++|+...|.+...+...+
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a 397 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 397 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 44567888899999999999999999999999999885 68988888887777777777777777777776666665555
Q ss_pred HH-HHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 189 RA-YRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 189 ~~-~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
.+ +...|++++|...|+++++.+|++
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence 44 335677777777777777777754
No 190
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.90 E-value=7.7e-09 Score=89.43 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----C
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL-----NPS---SALLYAKRGQSYLQLSKPNACIRDCSVALKIN-----P 178 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-----p 178 (231)
.+..+......+...|+|++|+..|++++++ .|+ ....+.++|.+|..+|+|++|+..+++++.+. |
T Consensus 286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 3445555566778899999999999999976 333 36789999999999999999999999999774 5
Q ss_pred CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCHH
Q psy13481 179 DSA---AAYKFRGRAYRLLGKWEEAAVDLRNACKI-----DFDEQ 215 (231)
Q Consensus 179 ~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~ 215 (231)
+++ ..++++|.+|..+|++++|+..|++|+++ .|++.
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 565 47899999999999999999999999986 56654
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.89 E-value=4.3e-09 Score=92.46 Aligned_cols=107 Identities=8% Similarity=-0.005 Sum_probs=94.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
+.+.++..+..+..+|.++...|+|++|+.+|++++++ +|+.+..++++|.+|..+|+|++|+..|++|+.+
T Consensus 343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999987 5555788999999999999999999999999976
Q ss_pred -----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 177 -----NPDSAA---AYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 177 -----~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
.|+|+. ...+++.++..++.+++|...|+++.+-.
T Consensus 423 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 423 LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477754 66789999999999999999999987543
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.89 E-value=3.5e-08 Score=71.72 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=84.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL- 193 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~- 193 (231)
+|..+...+.+++|+..|+++.+. .++.+++++|.+|.. .+++.+|+.+|+++.+. .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 777778888999999999999987 689999999999999 89999999999999987 689999999999999
Q ss_pred ---cCCHHHHHHHHHHHHhcCCC
Q psy13481 194 ---LGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 194 ---~g~~~~A~~~~~~al~l~p~ 213 (231)
.+++++|+.+|++|.+....
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCH
T ss_pred CCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999999999999998653
No 193
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.88 E-value=2.2e-08 Score=69.23 Aligned_cols=70 Identities=14% Similarity=0.023 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 146 SALLYAKRGQSYLQLSKPNACIRDCSVALKIN-------PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
++.-++.+|..++..|+|..|+.+|+.|+... .....++..+|.+++.+|+++.|+..++++++++|++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 45678899999999999999999999999874 34578999999999999999999999999999999865
No 194
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.84 E-value=3.4e-08 Score=82.64 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLN--------PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---- 180 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---- 180 (231)
+..+..+|..+...|++++|+..|++++.+. |....++.++|.++...|++++|+..+++++.+.+..
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 4567889999999999999999999999875 3456788899999999999999999999999998753
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 181 -AAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 181 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
..++..+|.++...|++++|...+++++.+.
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999873
No 195
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.83 E-value=1.3e-08 Score=85.14 Aligned_cols=102 Identities=7% Similarity=0.047 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN-------- 177 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-------- 177 (231)
.+..+..+|..+...|++++|+..|++++.+.+.. ..+++++|.++...|++.+|+..+++++.+.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 131 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 35677889999999999999999999999886543 3447889999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 178 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
|....++.++|.++...|++++|...+++++.+.+.
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 334567888999999999999999999999998774
No 196
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.82 E-value=1.3e-08 Score=69.12 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481 112 KSNEKKREAIHAYNDGK---FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~---~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~ 181 (231)
++..+..+|..++..++ .++|..+++++++++|+++.+++.+|..+++.|+|.+|+..+++++..+|.++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 46788889999876665 79999999999999999999999999999999999999999999999999843
No 197
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.81 E-value=5.7e-08 Score=84.76 Aligned_cols=96 Identities=16% Similarity=0.076 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 113 SNEKKREAIHAYNDG---KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 113 a~~~~~~a~~~~~~~---~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
..+++.+|..+...| ++++|+..|+++++. .++.+++++|.+|.. .+++.+|+.+|+++++.. ++.+++
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 403 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV 403 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence 456677777777756 788888888888877 578889999999988 889999999999998864 688999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q psy13481 186 FRGRAYRL----LGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 186 ~lg~~~~~----~g~~~~A~~~~~~al~l~p 212 (231)
++|.+|.. .+++++|..+|++++..+|
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999988 8899999999999999884
No 198
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.75 E-value=2.4e-08 Score=81.36 Aligned_cols=97 Identities=20% Similarity=0.064 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-C-HHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD-S-AAAYKFRGRAY 191 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~-~-~~~~~~lg~~~ 191 (231)
.....+|..+...|+|++|.+.|..++...|.+. +++.+|.++++.++|.+|+..|+.++...+. . ..+++++|.++
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 4556788999999999999999999999999888 9999999999999999999999988765322 1 35899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcC
Q psy13481 192 RLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~ 211 (231)
..+|++++|+..|++++.-.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTST
T ss_pred HHCCCHHHHHHHHHHHhcCC
Confidence 99999999999999998654
No 199
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.74 E-value=9.1e-08 Score=77.68 Aligned_cols=104 Identities=13% Similarity=-0.027 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CChHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYN-----DG------KFEDAVNAYSEAIKLNPS--SALLYAKRGQSYLQL-----SKPNACIRDCS 171 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~-----~~------~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~Ai~~~~ 171 (231)
++++..++..|..... .| ....|...++++++++|+ +..+|..+|.+|... |+.++|..+|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 3445666666655432 23 457899999999999999 677999999999996 99999999999
Q ss_pred HHHhhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q psy13481 172 VALKINPDS-AAAYKFRGRAYRL-LGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 172 ~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~ 213 (231)
+|+.++|+. ..+++.+|..+.. .|++++|...+++++..+|.
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 999999975 9999999999988 59999999999999998876
No 200
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=1.2e-07 Score=69.87 Aligned_cols=80 Identities=8% Similarity=-0.000 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDG---KFEDAVNAYSEAIKLN-P-SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~---~~~~Ai~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~ 186 (231)
+....++.|..+.+.+ ++.+++..|+.+++.+ | +..+++|++|..++++|+|..|+.+++++++++|+|..+...
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3678899999999988 7779999999999998 7 568999999999999999999999999999999999998876
Q ss_pred HHHHH
Q psy13481 187 RGRAY 191 (231)
Q Consensus 187 lg~~~ 191 (231)
+..+-
T Consensus 111 k~~ie 115 (152)
T 1pc2_A 111 ERLID 115 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 201
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.67 E-value=2e-07 Score=80.92 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 115 EKKREAIHAYNDG---KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL----SKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 115 ~~~~~a~~~~~~~---~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
+++.+|..+...| ++.+|+..|++++...+..+..++++|.+|... +++.+|+.+|+++. |.++.+++++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 6677888888888 888899999999888888888888888888665 68888888888887 7888888888
Q ss_pred HHH-H--HHcCCHHHHHHHHHHHHhcC
Q psy13481 188 GRA-Y--RLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 188 g~~-~--~~~g~~~~A~~~~~~al~l~ 211 (231)
|.+ + ...|++++|+.+|+++....
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 888 4 46788888888888888765
No 202
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.66 E-value=1.1e-06 Score=76.44 Aligned_cols=93 Identities=14% Similarity=0.055 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481 114 NEKKREAIHAYN----DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAYK 185 (231)
Q Consensus 114 ~~~~~~a~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~ 185 (231)
.+++.+|..+.. .+++++|+..|++++.. .++.+++++|.+|.. .+++++|+.+|+++++. .++.+++
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 151 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQ 151 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 344444444444 45555555555554443 244445555555544 44555555555554443 2444555
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhc
Q psy13481 186 FRGRAYRL----LGKWEEAAVDLRNACKI 210 (231)
Q Consensus 186 ~lg~~~~~----~g~~~~A~~~~~~al~l 210 (231)
++|.+|.. .+++++|+..|++++..
T Consensus 152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 55555544 44555555555555444
No 203
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.62 E-value=4e-07 Score=64.80 Aligned_cols=103 Identities=9% Similarity=-0.021 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q psy13481 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA---CIRDCSVALKIN-P-DSAAAYKFRGRAYRLLGKWEEAA 201 (231)
Q Consensus 127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---Ai~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~ 201 (231)
.....+...|.+.+..++.+..+.+++|.++.+.++... +|..++..+..+ | ..-..+|.+|..++.+|+|..|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 455667778888888888899999999999999998777 899999888876 4 45578999999999999999999
Q ss_pred HHHHHHHhcCCCHH-HHHHHHhhchhhhc
Q psy13481 202 VDLRNACKIDFDEQ-ADEWLKEVTPNKLN 229 (231)
Q Consensus 202 ~~~~~al~l~p~~~-~~~~l~~~~~~~~k 229 (231)
.++...+++.|++. +..+...+..++.|
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999875 77777666666543
No 204
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.50 E-value=2e-06 Score=70.90 Aligned_cols=100 Identities=8% Similarity=-0.139 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNP--SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD------SAAAYK 185 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~------~~~~~~ 185 (231)
..+...|.++...|++++|+..+.++|..+| ++..++..++.+++++|+++.|...+++....+|+ ......
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence 3456899999999999999999999999987 88999999999999999999999999999999983 333444
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhcCCC
Q psy13481 186 FRGRAYRLLG--KWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 186 ~lg~~~~~~g--~~~~A~~~~~~al~l~p~ 213 (231)
.-|++....| ++++|...|+.+....|+
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 4466677777 999999999999999887
No 205
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.47 E-value=1.2e-06 Score=75.92 Aligned_cols=86 Identities=14% Similarity=0.100 Sum_probs=51.7
Q ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 117 KREAIHAYND----GKFEDAVNAYSEAIKLNPSSALLYAKRGQS-Y--LQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 117 ~~~a~~~~~~----~~~~~Ai~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
+.+|..+... +++++|+..|+++. |.++.+++++|.+ + ...+++.+|+.+|+++++.+ ++.+++++|.
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~ 291 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGK 291 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence 4444444333 56666666666665 5666666666666 3 35566666666666666543 5666666666
Q ss_pred HHHHcC-----CHHHHHHHHHHHH
Q psy13481 190 AYRLLG-----KWEEAAVDLRNAC 208 (231)
Q Consensus 190 ~~~~~g-----~~~~A~~~~~~al 208 (231)
+|. .| ++++|+.+|+++.
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh
Confidence 665 44 6666666666666
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.45 E-value=2.1e-06 Score=62.10 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q psy13481 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL----LGKWEEAAV 202 (231)
Q Consensus 127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~ 202 (231)
+++++|+..|+++.+.....+. +|.+|...+.+++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 5789999999999998754443 999999999999999999999997 689999999999999 899999999
Q ss_pred HHHHHHhcC
Q psy13481 203 DLRNACKID 211 (231)
Q Consensus 203 ~~~~al~l~ 211 (231)
+|+++.+..
T Consensus 83 ~~~~Aa~~g 91 (138)
T 1klx_A 83 YYSKACGLN 91 (138)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHcCC
Confidence 999999874
No 207
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.43 E-value=1.6e-06 Score=71.42 Aligned_cols=101 Identities=12% Similarity=0.014 Sum_probs=83.4
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----------CCCCHHHH
Q psy13481 119 EAIHAYNDG--KFEDAVNAYSEAIKLNPS--SALLYAKRGQSYLQLSKPNACIRDCSVALKI----------NPDSAAAY 184 (231)
Q Consensus 119 ~a~~~~~~~--~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~----------~p~~~~~~ 184 (231)
.|.+.+..| ++.+|...|+++....|+ ....+++ ++.++|+|++|...++.++.. +|+++.++
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 343355555 999999999999999887 3445554 899999999999999988877 58899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q psy13481 185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVT 224 (231)
Q Consensus 185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~ 224 (231)
.++..+...+|+ +|.+.++++...+|++....-+.+..
T Consensus 259 aN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~ 296 (310)
T 3mv2_B 259 ANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEID 296 (310)
T ss_dssp HHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 999999999998 89999999999999987555554443
No 208
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.39 E-value=2.7e-06 Score=82.04 Aligned_cols=91 Identities=21% Similarity=0.196 Sum_probs=76.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--------------------h--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIK--------------------L--NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~--------------------~--~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
.|..+...|.|++|..+|+++-. . ..+.+.+|+++|.++...|++.+|+..|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 36777777777777666665431 1 3467899999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 177 NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 177 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+++..|...|.++..+|+|++|+++|..|.+..++.
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence 899999999999999999999999999999988664
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.38 E-value=1.1e-06 Score=75.80 Aligned_cols=90 Identities=12% Similarity=0.101 Sum_probs=75.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
+.+.++..+..+..+|.++...|+|++|+.++++++.+ +|..+..++++|.+|..+|+|++|+..+++|+.+
T Consensus 321 lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 321 LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999986 4555778999999999999999999999999977
Q ss_pred -----CCCCHH---HHHHHHHHHHHc
Q psy13481 177 -----NPDSAA---AYKFRGRAYRLL 194 (231)
Q Consensus 177 -----~p~~~~---~~~~lg~~~~~~ 194 (231)
.|+|+. ++.+++.+...+
T Consensus 401 ~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 401 MRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 477765 445566665443
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.36 E-value=9.8e-07 Score=76.27 Aligned_cols=80 Identities=16% Similarity=0.117 Sum_probs=70.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
+.+.++..+..+..+|.++..+|+|++|+.+|++++.+ +|+.+..++++|.+|..+|+|++|+..|++|+.+
T Consensus 332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999987 5556788999999999999999999999999987
Q ss_pred C-----CCCHHHH
Q psy13481 177 N-----PDSAAAY 184 (231)
Q Consensus 177 ~-----p~~~~~~ 184 (231)
. |+|+.+-
T Consensus 412 ~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 412 MEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTCTTCHHHH
T ss_pred HHHHcCCCChHHH
Confidence 4 7776543
No 211
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.26 E-value=8e-06 Score=78.81 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---------------
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP--------------- 178 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p--------------- 178 (231)
..+...|..++..|+|++|+.+|.++ ..|..+|.++.++|+|++|+..+++|....+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence 45668999999999999999999986 5899999999999999999999999855543
Q ss_pred ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 179 ----------DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 179 ----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.++..+..++..|...|.|++|+..|++++.+++.+.
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence 2444566778889999999999999999999998653
No 212
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.25 E-value=9.2e-07 Score=76.19 Aligned_cols=88 Identities=16% Similarity=0.216 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH-------
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF------- 186 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~------- 186 (231)
..+...|..++..|+|++|+.+|.++ ..|.++|.++.++|+|++|+..+.++ .++.+|..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 189 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence 37777888888888888888888866 46778888888888888888888877 24444443
Q ss_pred -----------------------HHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 187 -----------------------RGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 187 -----------------------lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
+..+|...|++++|+..+++++.+++.+
T Consensus 190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 3356777778888888888888887754
No 213
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=4.2e-06 Score=71.00 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CC---
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP---DS--- 180 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p---~~--- 180 (231)
+..+..+|..+...|+|.+|+..+++++.. .+....++..+|.+|..+|+|.+|...+++++.+.+ ..
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 567788999999999999999999999876 334478999999999999999999999999987753 22
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 181 -AAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 181 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
...+..+|..+...|+|..|..+|..++..
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 356788899999999999999999999875
No 214
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.24 E-value=1.1e-05 Score=59.81 Aligned_cols=94 Identities=12% Similarity=0.054 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CC-
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---------ALLYAKRGQSYLQLSKPNACIRDCSVALKINP---DS- 180 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p---~~- 180 (231)
..++.....++..+.|+.|+-....++.+..++ ..++..+|.+++..++|..|...|++||.... ++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456778888999999999999999988764322 34788899999999999999999999876541 11
Q ss_pred ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481 181 ---------------------AAAYKFRGRAYRLLGKWEEAAVDLRNA 207 (231)
Q Consensus 181 ---------------------~~~~~~lg~~~~~~g~~~~A~~~~~~a 207 (231)
....|.++.||..+|++++|+..++..
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 257899999999999999999998864
No 215
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1e-05 Score=68.54 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNP------SSALLYAKRGQSYLQLSKPNACIRDCSVALKIN------PDSA 181 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------p~~~ 181 (231)
......|..+...|++++|+.++++++...+ ....++.++|.+|...|+|.+|+..+++++... +...
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 3444556666667788888888888776522 236788999999999999999999999998763 3346
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
.++..+|.+|..+|+|++|...|++++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999874
No 216
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.10 E-value=1.7e-05 Score=56.31 Aligned_cols=79 Identities=9% Similarity=-0.003 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFED---AVNAYSEAIKLN-P-SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~---Ai~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l 187 (231)
....+..|..+....+... +|.+++..++.+ | ..-++++.+|..++++|+|..|+.+++.+|++.|.|..+....
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5677888989988887776 999999999887 5 5678999999999999999999999999999999999987766
Q ss_pred HHHH
Q psy13481 188 GRAY 191 (231)
Q Consensus 188 g~~~ 191 (231)
..+-
T Consensus 115 ~~i~ 118 (126)
T 1nzn_A 115 RLID 118 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 217
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.09 E-value=4e-05 Score=66.02 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------------------------HHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAK------------------------------RGQSYLQ 159 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~------------------------------la~~~~~ 159 (231)
...+..+..+|.++...|+|++|++.|.++ +++..|.. +..+|.+
T Consensus 145 Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 145 YNNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD 219 (449)
T ss_dssp HHHTTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHH
Confidence 334567778999999999999999999999 24444433 3367888
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcC
Q psy13481 160 LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL--GKWEEAAVDLRNACKID 211 (231)
Q Consensus 160 ~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~ 211 (231)
.|++.+|+..+++++.+++.+...|..+|.+|..- ++..+.++.|...+.+.
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~ 273 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 273 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHH
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999988654 45666666666544443
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.08 E-value=2.3e-05 Score=63.59 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHH------cCCHHHHHHH-----HHHHH-HhCCCCHHHHHHHHHHHHH---c--CC------hHH
Q psy13481 109 DIDKSNEKKREAIHAYN------DGKFEDAVNA-----YSEAI-KLNPSSALLYAKRGQSYLQ---L--SK------PNA 165 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~------~~~~~~Ai~~-----~~~al-~~~p~~~~~~~~la~~~~~---~--~~------~~~ 165 (231)
++..+..++.+|..|.. ...|.+++.. +..++ +.+|+++.++++.|.++.. . |. ...
T Consensus 102 ~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~ 181 (301)
T 3u64_A 102 AYSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHA 181 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHH
Confidence 34455666666654432 2455544442 23333 3588889999999888755 2 32 578
Q ss_pred HHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCH
Q psy13481 166 CIRDCSVALKINPD--SAAAYKFRGRAYRLL-----GKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 166 Ai~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~l~p~~ 214 (231)
|...++++++++|+ +..+|..+|..|... |+.++|..+|++|++++|+.
T Consensus 182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999 677999999999996 99999999999999999963
No 219
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.02 E-value=6.2e-05 Score=53.71 Aligned_cols=67 Identities=6% Similarity=-0.039 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 147 ALLYAKRGQSYLQLSKP---NACIRDCSVALKINPD-SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~---~~Ai~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
..+.+++|-++.+..+. ..+|..++..+...|. .-..++.+|..++.+|+|..|..+....+++.|+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 34444444444444432 2344444444444442 2334444555555555555555555555555554
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.97 E-value=2e-05 Score=66.28 Aligned_cols=72 Identities=21% Similarity=0.217 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~ 182 (231)
+..+..+...|..++..|++++|+..+++|+.++| +..+|..+|.++...|++++|+..|.+|+.++|....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 33466777788888888999999999999999997 5788899999999999999999999999999998753
No 221
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.97 E-value=0.00028 Score=50.91 Aligned_cols=84 Identities=6% Similarity=-0.029 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHH
Q psy13481 145 SSALLYAKRGQSYLQLSKP---NACIRDCSVALKINPDS-AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEW 219 (231)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~---~~Ai~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~ 219 (231)
-+....+++|.++.+..+. ..+|..++..+...|.. -..+|.+|..++.+|+|..|..+....+++.|++. +..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3677788888888887764 36788888888877743 45778888888888888888888888888888764 5555
Q ss_pred HHhhchhhh
Q psy13481 220 LKEVTPNKL 228 (231)
Q Consensus 220 l~~~~~~~~ 228 (231)
...+..++.
T Consensus 117 k~~Ie~~i~ 125 (144)
T 1y8m_A 117 KSMVEDKIQ 125 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.93 E-value=0.00014 Score=53.10 Aligned_cols=102 Identities=12% Similarity=0.019 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481 112 KSNEKKREAIHAYNDGKF------EDAVNAYSEAIKLNPSS--------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~------~~Ai~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~ 177 (231)
+.+.|+......-+.|+. +.-++.|++|+..-|-. ...|.+.|.. ..+++.+.|...|+.++.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh
Confidence 356788888888888998 89999999999987642 5677777755 67799999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 178 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
...+.+|...|..-..+|+...|.+.+.+|+.+.|..
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 8889999999999999999999999999999999974
No 223
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.93 E-value=0.00015 Score=51.70 Aligned_cols=79 Identities=8% Similarity=-0.048 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKF---EDAVNAYSEAIKLNPS-SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~---~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
....+..|..+....+. .++|.+++..++.+|. .-++++.+|..++++|+|..|..+++.++++.|+|..+.....
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 46777888888877654 4799999999999984 5889999999999999999999999999999999999877665
Q ss_pred HHH
Q psy13481 189 RAY 191 (231)
Q Consensus 189 ~~~ 191 (231)
.+-
T Consensus 120 ~Ie 122 (134)
T 3o48_A 120 MVE 122 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 224
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.89 E-value=0.00025 Score=51.22 Aligned_cols=79 Identities=6% Similarity=-0.055 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFE---DAVNAYSEAIKLNP-SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG 188 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~---~Ai~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg 188 (231)
....|+.|..+....+.. ++|.+++..++..| ..-++++.+|..++++|+|..|..+++.+|++.|+|..+.....
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 567788888888876554 79999999999998 45789999999999999999999999999999999998876655
Q ss_pred HHH
Q psy13481 189 RAY 191 (231)
Q Consensus 189 ~~~ 191 (231)
.+-
T Consensus 119 ~Ie 121 (144)
T 1y8m_A 119 MVE 121 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 225
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.75 E-value=0.0021 Score=54.56 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----------------------ALLYAKRGQSYLQLSKPNAC 166 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A 166 (231)
|......+...|......|+...|+..+.+|+.+.... ..+...++.++...|++.+|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 44456666777777788899999999999999884211 12344567888999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCHHHHHHHHhhc
Q psy13481 167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK-------IDFDEQADEWLKEVT 224 (231)
Q Consensus 167 i~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------l~p~~~~~~~l~~~~ 224 (231)
+..+..++..+|.+-.+|..+-.++...|+..+|+..|+++.. ++|.....+++..+.
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il 255 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 255 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988754 578877777666654
No 226
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.66 E-value=0.00062 Score=61.98 Aligned_cols=100 Identities=7% Similarity=-0.056 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKL-NPSSALLYAKRGQSYLQLSK-PNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-~p~~~~~~~~la~~~~~~~~-~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
..|...+....+.|+.+.|...|.+|++. .+....+|...|.+.++.++ ++.|...|+++++..|+++..|...+...
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 35666666667789999999999999988 44456788888888878765 99999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC
Q psy13481 192 RLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~al~l~p~ 213 (231)
...|+.+.|...|++|+...|+
T Consensus 515 ~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSS
T ss_pred HhCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999884
No 227
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.57 E-value=0.00056 Score=62.30 Aligned_cols=81 Identities=12% Similarity=0.047 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481 130 EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACI-RDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208 (231)
Q Consensus 130 ~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai-~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 208 (231)
......|++++...|.++.+|+..|..+...|+..+|+ ..|++|+..+|.+...|..++......|+++.|...|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hc
Q psy13481 209 KI 210 (231)
Q Consensus 209 ~l 210 (231)
..
T Consensus 406 ~~ 407 (679)
T 4e6h_A 406 DR 407 (679)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.42 E-value=0.00093 Score=49.53 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC-------------------CHHHHHHHHHHHHHcCChHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL------NPS-------------------SALLYAKRGQSYLQLSKPNAC 166 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~------~p~-------------------~~~~~~~la~~~~~~~~~~~A 166 (231)
.+..+...|..++..++|..|...|+++|.. .+. ..++.+.+|.||.+++++.+|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 3678888999999999999999999999865 111 126889999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 167 IRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 167 i~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
+..++.. -..-+.+++...+|..|
T Consensus 142 i~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 142 IAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred HHHHhcC-CchhcCHHHHHHHHHHh
Confidence 9988543 22336777777787765
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0031 Score=57.84 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481 128 KFEDAVNAYSEAIKL--------NPSS----------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189 (231)
Q Consensus 128 ~~~~Ai~~~~~al~~--------~p~~----------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~ 189 (231)
+=-+|+..+.++++. .+.+ ...+..-+..+...|+|+-|+...++|+..-|.....|+.|+.
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~ 379 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR 379 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 344678888877742 2222 3355556888889999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHH
Q psy13481 190 AYRLLGKWEEAAVDLRNA 207 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~a 207 (231)
||..+|+|+.|+-.+..+
T Consensus 380 vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 380 CHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHhcC
Confidence 999999999999887766
No 230
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.81 E-value=0.061 Score=40.12 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hC---------------CC
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK--IN---------------PD 179 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~--~~---------------p~ 179 (231)
...+..++-.|.|..|+-++. +-+...+.+--+.||.++++|..|+..++..+. .+ |.
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 346778888999999987754 335567777789999999999999999999982 22 33
Q ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 180 SAA-AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 180 ~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
+-. .+..+|..+...|+.++|+..|......+|=-.
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 443 567789999999999999999999999988654
No 231
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.78 E-value=0.064 Score=46.92 Aligned_cols=110 Identities=7% Similarity=-0.042 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL--NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP-DSAAAYKFRGR 189 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p-~~~~~~~~lg~ 189 (231)
...+..+...+.+.|++++|+.+|++.... .| +...|+.+-..|.+.|+.++|...|+...+..- -+...|..+-.
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 356667778889999999999999998875 44 678888999999999999999999999887653 36778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCHHHHHHHHhh
Q psy13481 190 AYRLLGKWEEAAVDLRNACK--IDFDEQADEWLKEV 223 (231)
Q Consensus 190 ~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~l~~~ 223 (231)
+|...|++++|...|++... ..|+......+...
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 99999999999999998765 56776655555544
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0094 Score=54.68 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~a 173 (231)
...+...+..+..+|+|+-|+.+-++|+...|.....|+.|+.||..+|+|+.|+-.++-+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456677888999999999999999999999999999999999999999999999887765
No 233
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.56 E-value=0.022 Score=49.83 Aligned_cols=80 Identities=15% Similarity=-0.017 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~ 193 (231)
..+..+|....-...+..|..+|.+|+.++|++...|+.+|.+....|++-+|+-+|-+++....-.+.+..++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 45667888888889999999999999999999999999999999999999999999999998887788888888888765
No 234
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.51 E-value=0.033 Score=48.61 Aligned_cols=94 Identities=11% Similarity=-0.086 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS-KPNACIRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
...|...+....+.++.+.|...|.+| ...+.....|...|...+..+ +++.|...|+.++...|+++..|...+...
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356677777777788899999999999 433345678887888777777 599999999999999999998888888888
Q ss_pred HHcCCHHHHHHHHHHH
Q psy13481 192 RLLGKWEEAAVDLRNA 207 (231)
Q Consensus 192 ~~~g~~~~A~~~~~~a 207 (231)
...|+.+.|...|+++
T Consensus 365 ~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 365 LRIGDEENARALFKRL 380 (493)
T ss_dssp HHHTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8999999999888886
No 235
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.51 E-value=0.029 Score=49.00 Aligned_cols=101 Identities=8% Similarity=-0.107 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------------------------------
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQS------------------------------------ 156 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~------------------------------------ 156 (231)
...|...+..+...|+.++|...|++|+.. |.+...|...+..
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 567888888888999999999999999999 9886655544332
Q ss_pred ----HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCHH
Q psy13481 157 ----YLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG-KWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 157 ----~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~ 215 (231)
..+.+..+.|...|.+| ...+.....|...+..-...| +.+.|...|+.+++..|+..
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~ 354 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST 354 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH
Confidence 22355677788888888 433345667766676666556 58999999999998888753
No 236
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.41 E-value=0.023 Score=49.71 Aligned_cols=78 Identities=9% Similarity=-0.017 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCHHHHHHHHhhchh
Q psy13481 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKEVTPN 226 (231)
Q Consensus 149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~l~~~~~~ 226 (231)
.+..+|.+......+..|..+|.+|+.++|.++..|+.+|.+....|+.-.|+-+|.+++... |-..+...+..+..+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 566789999999999999999999999999999999999999999999999999999999764 445556555555544
No 237
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.19 E-value=0.081 Score=42.26 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=57.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q psy13481 121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182 (231)
Q Consensus 121 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~ 182 (231)
..+++.|+.++|+......|+.+|.++.....+-..+.-.|+++.|..-++.+.+++|....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 45678899999999999999999999999999999999999999999999999999998654
No 238
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.92 E-value=0.14 Score=43.41 Aligned_cols=94 Identities=10% Similarity=-0.056 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCCHH----HH
Q psy13481 118 REAIHAYNDGKFEDAVNAYSEAIKLNPS------SALLYAKRGQSYLQLSKPNACIRDCSVALKIN---PDSAA----AY 184 (231)
Q Consensus 118 ~~a~~~~~~~~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~---p~~~~----~~ 184 (231)
.+|..++..|+|.+|+..+++..+-... ..+.+..-..+|..++++..+...+.+|.... +.++. ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 6889999999999999999998875222 25667778999999999999999999886554 23443 44
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhcC
Q psy13481 185 KFRGRAYR-LLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 185 ~~lg~~~~-~~g~~~~A~~~~~~al~l~ 211 (231)
..-|..+. ..++|..|...|-.+++-.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 56688888 8999999999999987543
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.57 E-value=0.064 Score=39.08 Aligned_cols=81 Identities=12% Similarity=-0.122 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~ 192 (231)
+..|...|.. ...++.++|.+.|+.++.++...+.+|...|..-.+.|+...|...+.+|+.+.|.....+ ..+..-.
T Consensus 61 I~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l-e~a~~nl 138 (161)
T 4h7y_A 61 ARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML-EIALRNL 138 (161)
T ss_dssp HHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH-HHHHHHH
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH-HHHHHhh
Confidence 4555555544 4558999999999999999999999999999999999999999999999999999866543 3344444
Q ss_pred HcC
Q psy13481 193 LLG 195 (231)
Q Consensus 193 ~~g 195 (231)
..|
T Consensus 139 ~~~ 141 (161)
T 4h7y_A 139 NLQ 141 (161)
T ss_dssp HTT
T ss_pred hcC
Confidence 444
No 240
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.52 E-value=0.28 Score=42.80 Aligned_cols=96 Identities=9% Similarity=0.035 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy13481 127 GKFEDAVNAYSEAIKL--NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-PDSAAAYKFRGRAYRLLGKWEEAAVD 203 (231)
Q Consensus 127 ~~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 203 (231)
++++.|..+|++.... .| +...|+.+-.+|.+.|++++|...|+...... .-+...|..+-.+|...|++++|...
T Consensus 84 ~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 3478899999988765 34 67889999999999999999999999988764 23778888899999999999999999
Q ss_pred HHHHHh--cCCCHHHHHHHHhh
Q psy13481 204 LRNACK--IDFDEQADEWLKEV 223 (231)
Q Consensus 204 ~~~al~--l~p~~~~~~~l~~~ 223 (231)
|....+ +.|+......+-..
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHH
Confidence 998876 45775544444433
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.47 E-value=0.073 Score=42.52 Aligned_cols=60 Identities=17% Similarity=0.072 Sum_probs=56.8
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481 156 SYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215 (231)
Q Consensus 156 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 215 (231)
.+++.|+.++|+..+...+..+|.|+.....+-..++..|+|+.|.+.++.+.+++|+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 456889999999999999999999999999999999999999999999999999999855
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.27 E-value=0.11 Score=43.79 Aligned_cols=63 Identities=8% Similarity=0.046 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
..++..++..+...|++.+|+..+..++..+|-+-.+|..+-.++...|+..+|+..|+++-.
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556777888999999999999999999999999999999999999999999999988654
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.56 Score=40.26 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHh---hCCCCH--
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP--S----SALLYAKRGQSYLQLSKPNACIRDCSVALK---INPDSA-- 181 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p--~----~~~~~~~la~~~~~~~~~~~Ai~~~~~al~---~~p~~~-- 181 (231)
+.....+|..+...|++.+|...+.....-.- . -..++.....+++..++|..|...++++.. -.+.++
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 56667899999999999999999998764311 1 156788889999999999999999998632 233443
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 182 --AAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 182 --~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
..+...|..+...++|.+|..+|..++..
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35677899999999999999999998864
No 244
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.12 Score=44.24 Aligned_cols=98 Identities=7% Similarity=-0.085 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCH----HHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNP---SSALLYAKRGQSYLQLSKPNACIRDCSVALKINP--DSA----AAY 184 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p--~~~----~~~ 184 (231)
..+..+|..+++.|++++|++.|.++..... ...+++.....+++..++|..+...++++-.+.. .++ ...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556799999999999999999999887643 3378888899999999999999999999865532 222 244
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 185 KFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 185 ~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
...|.++...++|..|...|..++.-.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 556788889999999999998877654
No 245
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.95 E-value=0.43 Score=43.33 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=33.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173 (231)
Q Consensus 124 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~a 173 (231)
...|+++.|.+.. ..-++...|.++|..+.+.++++.|+.+|.++
T Consensus 663 l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3344555554442 24467899999999999999999999999875
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.78 E-value=0.68 Score=34.53 Aligned_cols=99 Identities=8% Similarity=-0.001 Sum_probs=61.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCCHHHH--------
Q psy13481 121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN--------PDSAAAY-------- 184 (231)
Q Consensus 121 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--------p~~~~~~-------- 184 (231)
..+...|+++.|.+..+.. ++...|..+|...+..|++.-|..+|.++-... ..+..-+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456778888888876654 567888888888888888888888877542221 1122211
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHh----------cCCCHHHHHHHHhhc
Q psy13481 185 -----KFRGRAYRLLGKWEEAAVDLRNACK----------IDFDEQADEWLKEVT 224 (231)
Q Consensus 185 -----~~lg~~~~~~g~~~~A~~~~~~al~----------l~p~~~~~~~l~~~~ 224 (231)
.....++..+|+++++++.|.+.-+ ..|++.+.+.+..+.
T Consensus 88 ~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 88 TREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHHHHHHHHHHhC
Confidence 2234456677777777776654432 346555666555543
No 247
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.87 E-value=2.7 Score=40.00 Aligned_cols=101 Identities=4% Similarity=-0.147 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIK-----LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-PDSAAAYKF 186 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~-----~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-p~~~~~~~~ 186 (231)
-..+..+-..+++.|+.++|..+|.+.-+ ..| +...|+-+-..|.+.|+.++|...|++..+.. .-|...|..
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45677788899999999999999977543 355 67899999999999999999999999987765 246777887
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHhc--CCCH
Q psy13481 187 RGRAYRLLGK-WEEAAVDLRNACKI--DFDE 214 (231)
Q Consensus 187 lg~~~~~~g~-~~~A~~~~~~al~l--~p~~ 214 (231)
+-.++...|+ .++|...|+..... .||.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~ 236 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCCh
Confidence 8778888898 57888999888764 4553
No 248
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.03 E-value=0.33 Score=42.50 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-------AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
+..++.+-..|+..+.|++|.....++. .|.+ ...+|.+|.++...++|.+|..+|..|++..|.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 6788889999999999999999999985 4432 346678999999999999999999999998774
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.71 E-value=0.54 Score=45.27 Aligned_cols=93 Identities=13% Similarity=0.033 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy13481 115 EKKREAIHAYNDGKFEDAVNAYSEAIKL-----------------------NPSSALLYAKRGQSYLQLSKPNACIRDCS 171 (231)
Q Consensus 115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~ 171 (231)
..+.+|..++..|++++|..+|.++-.- ....+.+|.....++.+.+.++.++....
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3488999999999999999999887321 11124677888889999999999999999
Q ss_pred HHHhhCC-CCHH----HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481 172 VALKINP-DSAA----AYKFRGRAYRLLGKWEEAAVDLRNA 207 (231)
Q Consensus 172 ~al~~~p-~~~~----~~~~lg~~~~~~g~~~~A~~~~~~a 207 (231)
.||+..+ ++.. .|.++-..+..+|+|++|...+...
T Consensus 924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 9998775 3332 6778888899999999999888654
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.31 E-value=1.2 Score=33.12 Aligned_cols=55 Identities=7% Similarity=0.028 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481 146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208 (231)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 208 (231)
++...+.+| +.+|+++.|...++.. ++...|..+|......|+++-|..+|+++-
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 556666666 5889999999987654 678899999999999999999999999873
No 251
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.72 E-value=2.6 Score=38.11 Aligned_cols=91 Identities=11% Similarity=-0.017 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIK--------LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~--------~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~ 184 (231)
...|..+|..+...++++.|+.+|.++-. ....+...+..++......|++..|...|-+. . + +
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~---g--~---~ 752 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA---G--D---I 752 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---T--C---H
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc---C--C---H
Confidence 36788999999999999999999998621 12233444455555555666666555544321 1 1 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
...-.+|..+++|++|+..-+ ...|..
T Consensus 753 ~~a~~~~~~~~~~~~A~~lA~---~~~~~~ 779 (814)
T 3mkq_A 753 QGAKDLLIKSQRFSEAAFLGS---TYGLGD 779 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH---HTTCCH
T ss_pred HHHHHHHHHcCChHHHHHHHH---HhCCCh
Confidence 223345666677777666533 355554
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.26 E-value=1.6 Score=39.21 Aligned_cols=87 Identities=11% Similarity=-0.002 Sum_probs=61.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy13481 122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA 201 (231)
Q Consensus 122 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 201 (231)
.++..+...++...+.+......++. ..-.++...++.|++..|..+|.+.-.-........|.+|.++..+|+.++|.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~ 339 (618)
T 1qsa_A 261 RLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK 339 (618)
T ss_dssp TSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHH
Confidence 33444535566677776655444333 33344444557799999999997765544456788899999999999999999
Q ss_pred HHHHHHHh
Q psy13481 202 VDLRNACK 209 (231)
Q Consensus 202 ~~~~~al~ 209 (231)
..|+++..
T Consensus 340 ~~~~~~a~ 347 (618)
T 1qsa_A 340 EILHQLMQ 347 (618)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99999876
No 253
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.11 E-value=4.6 Score=30.11 Aligned_cols=68 Identities=9% Similarity=0.078 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h---------------CCCCHHH-HHHHHHHHHHcCChHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIK--L---------------NPSSALL-YAKRGQSYLQLSKPNACIRDCSVA 173 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~--~---------------~p~~~~~-~~~la~~~~~~~~~~~Ai~~~~~a 173 (231)
++...+-.+.++...++|..|+..++..+. . +|.+-+. +..+|.++.+.|+-++||.++...
T Consensus 61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 356777888999999999999999999992 2 4445554 556799999999999999999987
Q ss_pred HhhCCC
Q psy13481 174 LKINPD 179 (231)
Q Consensus 174 l~~~p~ 179 (231)
....|-
T Consensus 141 f~~~~l 146 (242)
T 3kae_A 141 FGKSFL 146 (242)
T ss_dssp HHHCCC
T ss_pred cCCccc
Confidence 776643
No 254
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=88.41 E-value=4.6 Score=29.51 Aligned_cols=63 Identities=8% Similarity=0.133 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH---HHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAK---RGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~---la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
...+..|..++..|+|=+|-+.++.+....+.. ...+.. .|..+.+.||...|...+.+++..
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344678899999999999999999999887654 222223 345667789999999999999874
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.12 E-value=11 Score=30.66 Aligned_cols=27 Identities=11% Similarity=-0.230 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481 179 DSAAAYKFRGRAYRLLGKWEEAAVDLR 205 (231)
Q Consensus 179 ~~~~~~~~lg~~~~~~g~~~~A~~~~~ 205 (231)
.++..+..+|..|...|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 477889999999999999999999886
No 256
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.87 E-value=8.5 Score=29.17 Aligned_cols=93 Identities=8% Similarity=-0.041 Sum_probs=66.2
Q ss_pred HHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy13481 134 NAYSEAIKL---------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI--NPDSAAAYKFRGRAYRLLGKWEEAAV 202 (231)
Q Consensus 134 ~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 202 (231)
.++++++.. +|....+|...+..+ ..++...+...|.-.... .-..+..|-..|..+...|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 577777765 333356677766654 234466777777776554 45678888889999999999999999
Q ss_pred HHHHHHhcC--CCHHHHHHHHhhchhh
Q psy13481 203 DLRNACKID--FDEQADEWLKEVTPNK 227 (231)
Q Consensus 203 ~~~~al~l~--p~~~~~~~l~~~~~~~ 227 (231)
.|+.++... |-+...+.......++
T Consensus 137 Vy~~GI~~~A~P~~rL~~~~~~F~~R~ 163 (202)
T 3esl_A 137 LLELGAENNCRPYNRLLRSLSNYEDRL 163 (202)
T ss_dssp HHHHHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 999999876 5566666665555544
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.01 E-value=0.77 Score=39.17 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPD---SAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
...++..+|..|++.|++..|+..|.++...... -...+...-.++...++|..+...+.++..+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3557888999999999999999999998876533 2467788888999999999999999999765
No 258
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=84.78 E-value=5.9 Score=25.40 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
.....+..+...|...-+.|+|.+|+.+|..+++.
T Consensus 14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44566778888898899999999999999888764
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.36 E-value=2.1 Score=37.45 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~ 180 (231)
.+..+..+-..|...+.|+.|..+..++. .|.+ ..+++..|.++.-.++|.+|..++..|+...|.+
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 34555566677888899999999999884 5533 5677888999999999999999999999988754
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.33 E-value=16 Score=30.02 Aligned_cols=93 Identities=14% Similarity=0.065 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------CCCCHHHHHHHHHHHHHcCC-----
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL-------------------------NPSSALLYAKRGQSYLQLSK----- 162 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-------------------------~p~~~~~~~~la~~~~~~~~----- 162 (231)
-+.+...+.-+.+.++|++|++++...... -+-+.....++..++.....
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r 114 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR 114 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH
Confidence 355566677777888888888764443321 11122333333444333332
Q ss_pred ---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481 163 ---PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLR 205 (231)
Q Consensus 163 ---~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 205 (231)
...|+.|-.+.=...-.++..+..+|..|...+++.+|..+|-
T Consensus 115 ~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 115 KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 1234444433111122577888899999999999999998884
No 261
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=83.89 E-value=3.7 Score=25.73 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481 186 FRGRAYRLLGKWEEAAVDLRNACKIDFD 213 (231)
Q Consensus 186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~ 213 (231)
.+|..+...|++++|..+|-+|+.+.|.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3566666666666666666666666665
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.05 E-value=13 Score=31.29 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 151 AKRGQSYLQLSKPNACIRDCSVALKINPD--S----AAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 151 ~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
.++|..|+..|+|.+|+..+.+.+.--.. + ..++..-..+|..+|++..+...|.+|...
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 37899999999999999999888764321 1 346777888999999999999999998654
No 263
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=81.80 E-value=2.8 Score=27.50 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481 112 KSNEKKREAIHAYNDGKFEDAVNAYSEA 139 (231)
Q Consensus 112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~a 139 (231)
.+-.+-.+|..+...|+|++||++..++
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3555556666666666666666665554
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=81.71 E-value=9 Score=27.50 Aligned_cols=53 Identities=26% Similarity=0.139 Sum_probs=26.0
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 159 QLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 159 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
..|+-++--..+...+.-++-++..+..+|.+|...|+..+|-..+.+|.+-.
T Consensus 103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 103 IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 44444443333333333344455555566666666666666666555555543
No 265
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=80.79 E-value=4.4 Score=26.21 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
..+..+...|...-..|+|++|+.+|..+++.
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34666777888888888888888888887754
No 266
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=79.47 E-value=3.9 Score=26.23 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
....+..+...|...-..|+|++|+.+|..++..
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445677778888888889999988888887764
No 267
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=79.28 E-value=9.2 Score=25.10 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HH---HHH--HHHHHHHHcCChHHHHHHHHHHHh
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSS-AL---LYA--KRGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-~~---~~~--~la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
+..|..++..|+|=+|-+.++.+....|.. .. .+. ..|..+.+.|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 346777888888888888888888877542 11 222 224455566676 7777777765
No 268
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=78.85 E-value=10 Score=24.18 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
...+..+...|...=+.|+|.+|+.+|..+++.
T Consensus 8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 455777788888888899999999888888764
No 269
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=78.08 E-value=5.3 Score=26.17 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
.+.+..+...|...-..|+|++|+.+|..++..
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445677788888888889999999888887764
No 270
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=77.60 E-value=5.2 Score=36.12 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (231)
+......|..++..|+|.-|.++.+.++..+|++..+...++.+|.++|.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 35566788888999999999999999999999999999989988888774
No 271
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=76.56 E-value=8.6 Score=25.18 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
+..+..+|..+.+.|+|++||.+.+++..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56788999999999999999998887663
No 272
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=76.49 E-value=18 Score=26.32 Aligned_cols=59 Identities=3% Similarity=-0.185 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHH-H--HHHHHHcCCHHHHHHHHHHHHh
Q psy13481 151 AKRGQSYLQLSKPNACIRDCSVALKINPDS------AAAYKF-R--GRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 151 ~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~-l--g~~~~~~g~~~~A~~~~~~al~ 209 (231)
+..|..++..|+|=+|...++.+....+.. ..++.. + |..+...|++..|...+.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 446788888899999999999998887655 233444 3 3446778999999999999987
No 273
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.37 E-value=20 Score=33.85 Aligned_cols=92 Identities=10% Similarity=0.006 Sum_probs=69.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hC--------------------
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK-IN-------------------- 177 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~-~~-------------------- 177 (231)
....+...|.++-|. +.+...|.++..-|-+|.+|+..|++++|..+|++|-. +.
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 455667778777554 35567788887888999999999999999999997642 11
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCH
Q psy13481 178 PD--SAAAYKFRGRAYRLLGKWEEAAVDLRNACKI-DFDE 214 (231)
Q Consensus 178 p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~ 214 (231)
+. ....|......+...+-++-++.+.+.|+.. .+++
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd 931 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD 931 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCC
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCC
Confidence 11 1235677788899999999999999999964 4443
No 274
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=75.92 E-value=5.9 Score=27.22 Aligned_cols=34 Identities=21% Similarity=0.462 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
....+..+...|...-..|+|++|+.+|..+++.
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445677777888888888888888888877754
No 275
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=75.88 E-value=10 Score=28.66 Aligned_cols=37 Identities=22% Similarity=0.099 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA 147 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~ 147 (231)
..+.-.+..|..++.+++|.+|.+.+.+|+...|...
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 3467788999999999999999999999999988764
No 276
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=74.80 E-value=13 Score=23.22 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALL 149 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~ 149 (231)
..+|..+...|++++|+.+|-+|+...|.=...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 457888888888888888888888888765443
No 277
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=73.92 E-value=3.7 Score=26.35 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=10.3
Q ss_pred HHcCChHHHHHHHHHHHh
Q psy13481 158 LQLSKPNACIRDCSVALK 175 (231)
Q Consensus 158 ~~~~~~~~Ai~~~~~al~ 175 (231)
-+.|+|.+|+..|..+++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 455666666665555544
No 278
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.65 E-value=16 Score=35.19 Aligned_cols=89 Identities=9% Similarity=-0.052 Sum_probs=65.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----------------------
Q psy13481 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN---------------------- 177 (231)
Q Consensus 120 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~---------------------- 177 (231)
...+...+.++-|.+ .+...|.++...+-+|.+++..|++++|..+|+++-.--
T Consensus 819 ~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence 334556667665544 345567777778999999999999999999998863211
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481 178 -PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212 (231)
Q Consensus 178 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 212 (231)
...+..|+.....+...|.++.++++-+.|+...+
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~ 930 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE 930 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 11234566777788899999999999999998654
No 279
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=72.83 E-value=13 Score=24.24 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP 144 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p 144 (231)
..+..+...|..+++.++|.+|+.+|+++.....
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 4567777788888888888888888888876543
No 280
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=72.77 E-value=5.8 Score=26.19 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=14.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCC
Q psy13481 152 KRGQSYLQLSKPNACIRDCSVALKINPD 179 (231)
Q Consensus 152 ~la~~~~~~~~~~~Ai~~~~~al~~~p~ 179 (231)
.+|..+...|+++.|+.+|-+|+...|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3455555555555555555555554443
No 281
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=72.55 E-value=5.4 Score=34.31 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CC--C
Q psy13481 127 GKFEDAVNAYSEAIKLNPSS----------------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN--------PD--S 180 (231)
Q Consensus 127 ~~~~~Ai~~~~~al~~~p~~----------------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--------p~--~ 180 (231)
...++|...+.++....-++ .-..+++-.+|+++++..-|...++..-... |. -
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 45667888888888762221 1133456789999999999888885443222 21 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCH
Q psy13481 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKI-DFDE 214 (231)
Q Consensus 181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~ 214 (231)
...+|.+|..+...++|.+|...+..|++. .|.+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 346788999999999999999999999998 6643
No 282
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=71.43 E-value=11 Score=28.35 Aligned_cols=35 Identities=14% Similarity=-0.075 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~ 181 (231)
..+.+.+|.+++..++|.+|..++..|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 56788899999999999999999999999988764
No 283
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=69.65 E-value=49 Score=31.76 Aligned_cols=74 Identities=9% Similarity=-0.145 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCHHHHHHH
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKI----NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK--IDFDEQADEWL 220 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~l 220 (231)
-..|+.+-..|.+.|+.++|...|...-.+ ..-|...|..+-..|...|++++|...|..... +.||...+..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 346778888999999999999999764432 345778999999999999999999999999876 45775444333
No 284
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=68.34 E-value=5.1 Score=23.58 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhCCCCCChhhhhhHHHHHHHc
Q psy13481 11 KLQLFLGAVKKNPAIFYLPELKFFKDFVESY 41 (231)
Q Consensus 11 ~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~ 41 (231)
-++|+.++|+..|. +| +.|+.+|+-..
T Consensus 21 L~~GL~~lak~rP~---DP-i~~LA~~Ll~~ 47 (55)
T 3g36_A 21 LLQGMAVLAKERPP---NP-IEFLASYLLKN 47 (55)
T ss_dssp HHHHHHHHHHHCCS---CH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---CH-HHHHHHHHHHh
Confidence 46789999999998 44 99999998644
No 285
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=67.71 E-value=32 Score=28.72 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 146 SALLYAKRGQSYLQLS--KPNACIRDCSVALKIN-----PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 146 ~~~~~~~la~~~~~~~--~~~~Ai~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
.+.++.++|.+--..- ....++..|.+||... ..+...|..+|-.++..+++.+|++.|..|-..
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 3444555554432221 1223666666666542 456677888888999999999999999888654
No 286
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=67.33 E-value=12 Score=33.69 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy13481 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKW 197 (231)
Q Consensus 148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 197 (231)
.....+|...+..|+|.-|.+.++.++..+|+|..+...++.+|..+|.-
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 34556788888999999999999999999999999999999999988843
No 287
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=66.89 E-value=8.3 Score=24.42 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
-....+|..+...|+|+.|+.+|+.+++.
T Consensus 13 ~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 13 VENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 34456778888888999999888888764
No 288
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=66.84 E-value=33 Score=24.63 Aligned_cols=61 Identities=16% Similarity=0.013 Sum_probs=49.0
Q ss_pred HHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481 117 KREA-IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177 (231)
Q Consensus 117 ~~~a-~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~ 177 (231)
..+| ..+..+|+-++--+.+...+.-++-++..+..+|.+|.+.|+..+|-+.+.+|.+..
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3444 355677888888888888777777789999999999999999999999999998754
No 289
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=66.69 E-value=19 Score=23.67 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL 148 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~ 148 (231)
..-..+|..+...|+++.|+.+|-+|+...|.=..
T Consensus 21 l~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 21 LEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 34457899999999999999999999999886433
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.45 E-value=18 Score=34.13 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=44.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 153 RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 153 la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
+...+...|.++-|. ..+...|.++..-|.+|.+|...|++++|..+|++|-.
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 566777888887653 45678888888889999999999999999999998863
No 291
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.13 E-value=9.5 Score=34.15 Aligned_cols=90 Identities=10% Similarity=-0.069 Sum_probs=67.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----------------C---C--
Q psy13481 122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-----------------P---D-- 179 (231)
Q Consensus 122 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-----------------p---~-- 179 (231)
..+..|++..|...|...-..........|.+|.++..+|+..+|...|.++..-. + .
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~ 373 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQ 373 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCCh
Confidence 45577999999999987655444568889999999999999999999998876521 0 0
Q ss_pred ---C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481 180 ---S---AAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211 (231)
Q Consensus 180 ---~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 211 (231)
. ...-..++..+...|....|...+...+...
T Consensus 374 ~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~ 411 (618)
T 1qsa_A 374 NVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK 411 (618)
T ss_dssp CCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC
Confidence 0 0123456777888999999988888877543
No 292
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=64.04 E-value=57 Score=26.49 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC----HHH--------HHHHHHHHHH-cCCh-----HHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP----SS----ALL--------YAKRGQSYLQ-LSKP-----NACIRDC 170 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p----~~----~~~--------~~~la~~~~~-~~~~-----~~Ai~~~ 170 (231)
.......|..++..|+|.+|+..|+.+|..-| ++ .++ .|-+|...-. .... +...+.+
T Consensus 102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~l 181 (320)
T 3mkr_B 102 LIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRIC 181 (320)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHH
Confidence 33456789999999999999999999998754 12 011 2222322211 1111 2222333
Q ss_pred HHHH-----hhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhh
Q psy13481 171 SVAL-----KINPDSAA-AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNK 227 (231)
Q Consensus 171 ~~al-----~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~ 227 (231)
+-+. .+.|.|-. ++..--...++.++|.-|..+-++.+++.|.....+..+++....
T Consensus 182 ELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~~qArkil~~c 244 (320)
T 3mkr_B 182 EMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILSAC 244 (320)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3322 22233322 222223357889999999999999999999865555555554443
No 293
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.01 E-value=41 Score=28.53 Aligned_cols=67 Identities=12% Similarity=0.003 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIK---LNPSS----ALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~---~~p~~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
......+......++..++|..|...++++-. ..+.. ..++...|.++...++|.+|-.+|..++..
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 33456677788888999999999999998742 22323 456778899999999999999999988765
No 294
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=63.19 E-value=60 Score=26.43 Aligned_cols=114 Identities=19% Similarity=0.130 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC----HHH--------HHHHHHHHHHcCC----hHHHHHHHHH
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP----SS----ALL--------YAKRGQSYLQLSK----PNACIRDCSV 172 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p----~~----~~~--------~~~la~~~~~~~~----~~~Ai~~~~~ 172 (231)
.......|..++..|+|.+|+..|+.+|..-| ++ ..+ .|-+|... ++.+ -+...+.++-
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~i-El~Rr~l~~~~~kR~lEL 192 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSI-ELERRSLKEGNTVRMLEL 192 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHH-HHHHHTCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcccHHHHHHH
Confidence 44456789999999999999999999997632 11 111 22222221 1100 0111122222
Q ss_pred H-----HhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhh
Q psy13481 173 A-----LKINPDSAA-AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNK 227 (231)
Q Consensus 173 a-----l~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~ 227 (231)
+ ..+.|.|-. ++..--...++.++|.-|..+-++.+++.|.....+..+++....
T Consensus 193 AAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~c 253 (325)
T 3mv2_A 193 AAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKA 253 (325)
T ss_dssp HHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 122232222 222223357889999999999999999999755444455554443
No 295
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=62.20 E-value=17 Score=25.23 Aligned_cols=56 Identities=5% Similarity=0.031 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 118 REAIHAYNDGKFEDAVNAYSEA---IKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 118 ~~a~~~~~~~~~~~Ai~~~~~a---l~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
.....++..++.+..+..+... +...|... ...+-...--.+..+|..++++....
T Consensus 45 eASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~---~E~sF~~~fG~~L~~A~~~~~~y~~t 103 (126)
T 2npu_A 45 EASRLYFGERNVKGMFEVLEPLHAMMERGPQTL---KETSFNQAYGRDLMEAQEWCRKYMKS 103 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHccCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3444556778888887777665 44455431 11111111122345666666665543
No 296
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=62.11 E-value=44 Score=28.47 Aligned_cols=45 Identities=7% Similarity=-0.024 Sum_probs=34.0
Q ss_pred HHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 166 CIRDCSVALKI-----NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 166 Ai~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
++..|.+|+.. +..+...|..+|-.++..+++.+|+..|..|-..
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 55566665543 2456677888889999999999999999888654
No 297
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.58 E-value=7.8 Score=26.54 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHhhC
Q psy13481 163 PNACIRDCSVALKIN 177 (231)
Q Consensus 163 ~~~Ai~~~~~al~~~ 177 (231)
|.+|..+++++|.++
T Consensus 19 h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 344444444444443
No 298
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=60.68 E-value=22 Score=20.61 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
.+....++.+...|...+.-.|...|++.+++++++
T Consensus 14 ~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~l 49 (53)
T 2rkl_A 14 ASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 456677888889999999999999999999998875
No 299
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=58.95 E-value=62 Score=27.67 Aligned_cols=68 Identities=9% Similarity=-0.097 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP--S--------SALLYAKRGQSYLQLSKPNACIRDCSVALKI-NPDS 180 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p--~--------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~-~p~~ 180 (231)
......+-..|++.++..-|...++..-...+ . -..++|.+|..++-.++|.+|..++..|+.. .|.+
T Consensus 176 l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 176 LYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 34444555788999999988888765433322 1 2578889999999999999999999999999 7755
No 300
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=58.06 E-value=87 Score=26.63 Aligned_cols=46 Identities=7% Similarity=-0.026 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 165 ACIRDCSVALKI-----NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 165 ~Ai~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
.++..|++||.. +..+.-.|..+|-.++..++|.+|+..|..+-..
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 332 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhh
Confidence 345566666653 2456667788899999999999999999888653
No 301
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=58.05 E-value=20 Score=22.85 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=10.1
Q ss_pred HHcCChHHHHHHHHHHHh
Q psy13481 158 LQLSKPNACIRDCSVALK 175 (231)
Q Consensus 158 ~~~~~~~~Ai~~~~~al~ 175 (231)
-+.|+|.+|+..|..+++
T Consensus 30 D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 455666666655555544
No 302
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=57.49 E-value=24 Score=30.58 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 163 PNACIRDCSVALKINPD-----------SAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 163 ~~~Ai~~~~~al~~~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
|+..+.+++.|+..-|. -..++..++.+|...++|++|......++..
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788888888876653 1348889999999999999999999999864
No 303
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=56.76 E-value=34 Score=29.28 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhhCCC-----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 163 PNACIRDCSVALKINPD-----------------------SAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 163 ~~~Ai~~~~~al~~~p~-----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
|+..+.+++.|+..-|. -..++..++.+|..+|+|++|......++..
T Consensus 156 y~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 156 LSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCccccccccccccccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 57788888888876542 1247888999999999999999999999853
No 304
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=55.85 E-value=37 Score=28.79 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481 145 SSALLYAKRGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
+...++..+|.+|+.+++|++|+..++.+|.
T Consensus 188 tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 188 NKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3456677777777777778777777777775
No 305
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=54.76 E-value=20 Score=24.78 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCCCChhhhhhHHHHHHHcCC
Q psy13481 1 MSGLTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGG 43 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~g~ 43 (231)
|+-+|+++|++|+..-..+..|-+ ..-...-|+.++.++|.
T Consensus 1 Ms~lt~eqi~el~~~F~~~D~d~~--G~I~~~El~~~l~~~~~ 41 (148)
T 2lmt_A 1 MSELTEEQIAEFKDAFVQFDKEGT--GKIATRELGTLMRTLGQ 41 (148)
T ss_dssp CCSCCSHHHHHHHHHHHHHHCSSC--CEEEGGGHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCC--CeECHHHHHHHHHhcCC
Confidence 788999999999999999988776 22234456777888875
No 306
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.69 E-value=92 Score=25.85 Aligned_cols=88 Identities=7% Similarity=0.003 Sum_probs=63.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------C
Q psy13481 122 HAYNDGKFEDAVNAYSEAIKLN-----------------PSSALLYAKRGQSYLQLSKPNACIRDCSVALKI-------N 177 (231)
Q Consensus 122 ~~~~~~~~~~Ai~~~~~al~~~-----------------p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~-------~ 177 (231)
+.....+..+|++++++....- -....+....+..|+..|+...|...++++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 4456789999999998764321 011345567788999999999999999887532 2
Q ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 178 P-DSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 178 p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
| .+...|...+..|...++|..+...+-.++.
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2 1345666678888899999998888777775
No 307
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=54.54 E-value=22 Score=30.28 Aligned_cols=47 Identities=17% Similarity=0.039 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 163 PNACIRDCSVALKINPD--------SAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 163 ~~~Ai~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
|+..+.+++.|+..-|. -..++..++.+|..+|+|++|......++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 57788888888887654 244888999999999999999999998875
No 308
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=54.20 E-value=42 Score=21.82 Aligned_cols=56 Identities=11% Similarity=-0.045 Sum_probs=41.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCH----HHHHHH--HHHHHHcCCHHHHHHHHHHHHh
Q psy13481 152 KRGQSYLQLSKPNACIRDCSVALKINPDSA----AAYKFR--GRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 152 ~la~~~~~~~~~~~Ai~~~~~al~~~p~~~----~~~~~l--g~~~~~~g~~~~A~~~~~~al~ 209 (231)
..|..++..|+|=+|.+.++.+-...|..- ..+..+ |..+...|++ |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 457788889999999999999988885432 233333 4445678888 9999999876
No 309
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=54.05 E-value=38 Score=29.18 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 163 PNACIRDCSVALKINPDS-----------AAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 163 ~~~Ai~~~~~al~~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
|+..+.+++.|+..-|.. ..++..+|.+|..+|+|++|......++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 567788888888766532 348889999999999999999999999864
No 310
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=53.81 E-value=17 Score=23.01 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 151 AKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 151 ~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
..+|.=|..+|+|+.|+.+|+.+++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 35677777778888888888777653
No 311
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=53.15 E-value=26 Score=22.42 Aligned_cols=22 Identities=5% Similarity=-0.103 Sum_probs=13.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q psy13481 154 GQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 154 a~~~~~~~~~~~Ai~~~~~al~ 175 (231)
|.-.-..|+|.+|+..|..+++
T Consensus 23 Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 23 AVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3334566777777766666655
No 312
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=53.02 E-value=26 Score=30.11 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 163 PNACIRDCSVALKINPD--------SAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 163 ~~~Ai~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
|+..+.+++.|+..-|. -..++..+|.+|..+++|++|......++.
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 67788889999887653 234888999999999999999999888764
No 313
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=52.72 E-value=38 Score=28.80 Aligned_cols=47 Identities=26% Similarity=0.248 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 163 PNACIRDCSVALKINPDS--------AAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 163 ~~~Ai~~~~~al~~~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
|+..+.+++.|+..-|.. ..++..+|.+|..+|+|++|......++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 467788888888766542 44888999999999999999999998875
No 314
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=52.43 E-value=41 Score=28.59 Aligned_cols=33 Identities=15% Similarity=0.030 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 144 PSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
++...++..+|.+|+.+|+|++|+..++.+|..
T Consensus 193 ~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 193 VNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 444778889999999999999999999999863
No 315
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=52.38 E-value=41 Score=29.27 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhhCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481 163 PNACIRDCSVALKINPD-------------SAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209 (231)
Q Consensus 163 ~~~Ai~~~~~al~~~p~-------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 209 (231)
|+..+.+++.|+..-|. -..++..+|.+|...++|++|......++.
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 167 LKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 56778888888877662 134888999999999999999999999885
No 316
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=52.09 E-value=78 Score=28.54 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--Ch---------HHHHHHHHHHHhhCCCC-----
Q psy13481 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS--KP---------NACIRDCSVALKINPDS----- 180 (231)
Q Consensus 117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--~~---------~~Ai~~~~~al~~~p~~----- 180 (231)
...|..+-..|++++|+.+|.-|=+.+---.-.-..++.+..... +. +.-+...++.+++...+
T Consensus 447 ~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~ 526 (661)
T 2qx5_A 447 EQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISR 526 (661)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhh
Confidence 456677778888888888877653221111112223455554332 10 11222333333333222
Q ss_pred ---------HHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCH
Q psy13481 181 ---------AAAYKFRGRAY--RLLGKWEEAAVDLRNACKIDFDE 214 (231)
Q Consensus 181 ---------~~~~~~lg~~~--~~~g~~~~A~~~~~~al~l~p~~ 214 (231)
...+..+..++ +..|+|+.|+..+++ +.+-|-+
T Consensus 527 ~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 527 QIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 22344455554 899999999999997 6677755
No 317
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=52.07 E-value=31 Score=28.75 Aligned_cols=43 Identities=23% Similarity=0.198 Sum_probs=33.7
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy13481 132 AVNAYSEAIKL-----NPSSALLYAKRGQSYLQLSKPNACIRDCSVAL 174 (231)
Q Consensus 132 Ai~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al 174 (231)
++.+|.++|.. +....-.|..+|-++++.++|.+|+..+-.|-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 67888888875 33345567778889999999999999887654
No 318
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=49.53 E-value=51 Score=28.34 Aligned_cols=34 Identities=6% Similarity=-0.039 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481 144 PSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177 (231)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~ 177 (231)
++...++..+|.+|+.+++|++|+..++++|...
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4456788899999999999999999999999764
No 319
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=49.50 E-value=38 Score=22.67 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIK 141 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~ 141 (231)
...++..+...|....+.|+|++|...++++=+
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345678888889999999999999999988744
No 320
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=49.28 E-value=36 Score=28.98 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481 131 DAVNAYSEAIKL-----NPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 131 ~Ai~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
.++.+|.++|.. +....-.|..+|-++++.++|.+|+..+-.+-.
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 367788888865 333455677788899999999999999876643
No 321
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=49.14 E-value=44 Score=28.49 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 145 SSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
+...++..+|.+|+..++|++|+..++++|..
T Consensus 200 tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 200 NYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 34667778888888888888888888888864
No 322
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=48.98 E-value=39 Score=22.50 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIK 141 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~ 141 (231)
..++..+...|....+.|+|++|...++++-+
T Consensus 15 aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 15 SGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888899999999999999999988743
No 323
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=48.51 E-value=26 Score=29.97 Aligned_cols=48 Identities=23% Similarity=0.176 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 163 PNACIRDCSVALKINPDS--------AAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 163 ~~~Ai~~~~~al~~~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
|+..+.+++.|+..-|.. ..++..++.+|..+|+|++|......++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 577888888888876532 348889999999999999999999999864
No 324
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=53.83 E-value=3.8 Score=37.10 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy13481 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA 165 (231)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 165 (231)
......|..++..|+|.-|.++.+.++..+|++..+...++.+|.++|--.+
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 4555677788889999999999999999999999999989999988886443
No 325
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.82 E-value=74 Score=22.76 Aligned_cols=75 Identities=9% Similarity=-0.036 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCHHHHHHHHh
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKI--NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID--FDEQADEWLKE 222 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~l~~ 222 (231)
..+|...+.. ...+...|...... .-..+..|-..|..+...|++.+|...|+.+++.. |-+...+...+
T Consensus 71 LklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~ 144 (152)
T 4a1g_A 71 ISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRL 144 (152)
T ss_dssp HHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHH
T ss_pred HHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 4455555543 23366666665544 45677888889999999999999999999999876 44556655555
Q ss_pred hchhh
Q psy13481 223 VTPNK 227 (231)
Q Consensus 223 ~~~~~ 227 (231)
.+.++
T Consensus 145 F~~R~ 149 (152)
T 4a1g_A 145 FQTRL 149 (152)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 55443
No 326
>1dee_G Immunoglobulin G binding protein A; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=47.24 E-value=14 Score=21.31 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCC
Q psy13481 1 MSGLTPDAINKLQLFLGAVKKNPA 24 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~ 24 (231)
|++++.++- .+||+-++-||+
T Consensus 15 lp~lte~qr---ng~i~slkddPs 35 (54)
T 1dee_G 15 MPNLNEAQR---NGFIQSLKDDPS 35 (54)
T ss_dssp CSSSCHHHH---HHHHHHHHHCGG
T ss_pred CCCcchhhh---cccccccccCcc
Confidence 677777765 889999999998
No 327
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.31 E-value=82 Score=22.84 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=58.5
Q ss_pred HHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy13481 133 VNAYSEAIKLNPS---------SALLYAKRGQSYLQLSKPNACIRDCSVALK--INPDSAAAYKFRGRAYRLLGKWEEAA 201 (231)
Q Consensus 133 i~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~ 201 (231)
..++++++....+ ...+|...+... ++ +...|..... +.-..+..|-..|..+...|++.+|.
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~ 116 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKAD 116 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 4566777765332 245566666542 33 4455555544 44567888888999999999999999
Q ss_pred HHHHHHHhcC--CCHHHHHHHHhhchh
Q psy13481 202 VDLRNACKID--FDEQADEWLKEVTPN 226 (231)
Q Consensus 202 ~~~~~al~l~--p~~~~~~~l~~~~~~ 226 (231)
..|+.++... |-+...+.......+
T Consensus 117 ~Iy~~Gi~~~A~P~~~L~~~~~~F~~R 143 (164)
T 2wvi_A 117 AIFQEGIQQKAEPLERLQSQHRQFQAR 143 (164)
T ss_dssp HHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 9999999876 545555555555443
No 328
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=46.16 E-value=39 Score=21.34 Aligned_cols=18 Identities=6% Similarity=-0.084 Sum_probs=11.2
Q ss_pred HHcCChHHHHHHHHHHHh
Q psy13481 158 LQLSKPNACIRDCSVALK 175 (231)
Q Consensus 158 ~~~~~~~~Ai~~~~~al~ 175 (231)
-..|+|.+|+..|..+++
T Consensus 24 D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 455666666666666555
No 329
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=45.67 E-value=39 Score=21.90 Aligned_cols=18 Identities=6% Similarity=-0.090 Sum_probs=9.5
Q ss_pred HHcCChHHHHHHHHHHHh
Q psy13481 158 LQLSKPNACIRDCSVALK 175 (231)
Q Consensus 158 ~~~~~~~~Ai~~~~~al~ 175 (231)
-..|+|.+|+..|..+++
T Consensus 26 D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 344555555555555444
No 330
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=45.00 E-value=48 Score=22.31 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIK 141 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~ 141 (231)
...++......|....+.|+|++|...++++=+
T Consensus 18 ~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 18 NSGNARSFAMEALQFAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445678888899999999999999999988743
No 331
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=44.14 E-value=88 Score=22.61 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHH-HHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNAC-IRDCSVALKINPDSAAAYKFRGRAY 191 (231)
Q Consensus 115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A-i~~~~~al~~~p~~~~~~~~lg~~~ 191 (231)
..+..|..+|-..+|.+.|..++. .+|.. ...-+-+|..|.+..+...- ...+-..+.+ ...-.+.+-|+|
T Consensus 10 ~a~i~a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itl---kSde~yL~YWIy 83 (161)
T 2ynq_A 10 EAYIQSTELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITL---KTDEQYMLYWIY 83 (161)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCT---TSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCc---cCCHHHHHHHHH
Confidence 345577888999999999988875 34443 57788899999999987633 2222222222 223345566788
Q ss_pred HHcCCHHHHHHHH
Q psy13481 192 RLLGKWEEAAVDL 204 (231)
Q Consensus 192 ~~~g~~~~A~~~~ 204 (231)
...|++++|+..-
T Consensus 84 iGRg~~~eAlDiA 96 (161)
T 2ynq_A 84 IGRSQSEEALELA 96 (161)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HcCCchHHHHHHH
Confidence 8889999988763
No 332
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=43.69 E-value=41 Score=23.13 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIK 141 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~ 141 (231)
...++..+...|....+.|+|++|...++++-+
T Consensus 33 ~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 33 NSGNARSIVHEAFDAMREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888899999999999999988743
No 333
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=43.65 E-value=36 Score=23.16 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481 129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 129 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
...|+.++.+|+.. -..|+|.+|+..|..+++
T Consensus 15 l~kAi~lv~~Ave~---------------D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQE---------------DKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHH---------------HHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHccCHHHHHHHHHHHHH
Confidence 34566666666533 344666666666655554
No 334
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=43.42 E-value=50 Score=28.08 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy13481 131 DAVNAYSEAIKL-----NPSSALLYAKRGQSYLQLSKPNACIRDCSVAL 174 (231)
Q Consensus 131 ~Ai~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al 174 (231)
.++.+|++||.. .....-.|..+|-.+++.++|.+|+..+..+-
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 367788888874 33345667778999999999999999988764
No 335
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=43.33 E-value=47 Score=21.71 Aligned_cols=21 Identities=0% Similarity=-0.010 Sum_probs=10.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q psy13481 121 IHAYNDGKFEDAVNAYSEAIK 141 (231)
Q Consensus 121 ~~~~~~~~~~~Ai~~~~~al~ 141 (231)
..++..+|....+..+....+
T Consensus 18 r~~f~~~n~~~m~~~L~pLh~ 38 (94)
T 3fap_B 18 RLYFGERNVKGMFEVLEPLHA 38 (94)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHH
Confidence 344455555555555444433
No 336
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.70 E-value=1.1e+02 Score=23.37 Aligned_cols=88 Identities=9% Similarity=0.040 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy13481 133 VNAYSEAIKLNPSS---------ALLYAKRGQSYLQLSKPNACIRDCSVALK--INPDSAAAYKFRGRAYRLLGKWEEAA 201 (231)
Q Consensus 133 i~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~Ai~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~ 201 (231)
..++++++....++ ..+|...+.. . ..+...|..... +.-..+..|-..|..+...|+|.+|.
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~----~--~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 170 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY----I--DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKAD 170 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT----C--SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHc----c--CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 45666666653332 3445555542 2 344455555444 44567888888999999999999999
Q ss_pred HHHHHHHhcC--CCHHHHHHHHhhchh
Q psy13481 202 VDLRNACKID--FDEQADEWLKEVTPN 226 (231)
Q Consensus 202 ~~~~~al~l~--p~~~~~~~l~~~~~~ 226 (231)
..|+.++... |-+...+.......+
T Consensus 171 ~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 171 EVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp HHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 9999999875 546566555555554
No 337
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=42.33 E-value=38 Score=25.93 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=36.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q psy13481 121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACI 167 (231)
Q Consensus 121 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai 167 (231)
.+++++|.|++|.+.+++.+..++.+-.....|..+-.+...|..-+
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~l 168 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVI 168 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHH
Confidence 45678999999999999999988777778888887777766654433
No 338
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=40.91 E-value=21 Score=19.15 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=19.9
Q ss_pred HHHHH-HHHHhhCCCCCChhhhhhHHHHHHHc
Q psy13481 11 KLQLF-LGAVKKNPAIFYLPELKFFKDFVESY 41 (231)
Q Consensus 11 ~~~~~-~~~~~~~p~~l~~~~~~~~~~~~~~~ 41 (231)
.|+.| .++|+.+|+.+ +.|..+|...+
T Consensus 10 lL~~~~~~vl~~qP~di----~~f~a~yF~~l 37 (41)
T 2izx_A 10 LLQGYTVEVLRQQPPDL----VEFAVEYFTRL 37 (41)
T ss_dssp HHHHHHHHHHHHCCSCH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCH----HHHHHHHHHHH
Confidence 44554 46899999966 88888887654
No 339
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.88 E-value=69 Score=21.80 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAI 140 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al 140 (231)
-..+..+...|...-..|+-+.|+.+|++.|
T Consensus 19 h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDELGQKEEAKNYYKQGI 49 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 3334444444444444455555544444433
No 340
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=40.79 E-value=37 Score=29.06 Aligned_cols=48 Identities=17% Similarity=0.000 Sum_probs=38.5
Q ss_pred hH-HHHHHHHHHHhh-CCC--------CHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhc
Q psy13481 163 PN-ACIRDCSVALKI-NPD--------SAAAYKFRGRAYRLLG---------KWEEAAVDLRNACKI 210 (231)
Q Consensus 163 ~~-~Ai~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~l 210 (231)
|+ ..+.+++.|+.. -|. -..++..++.+|..++ +|++|......++..
T Consensus 160 y~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~~ 226 (482)
T 3otn_A 160 YDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIKS 226 (482)
T ss_dssp HHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHcc
Confidence 56 678889999887 442 2458889999999988 899999999998863
No 341
>2kzi_A Engineered protein, ZHER2 affibody; protein binding; NMR {Staphylococcus aureus} PDB: 2kzj_A 2otk_E
Probab=40.56 E-value=20 Score=21.90 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCC
Q psy13481 1 MSGLTPDAINKLQLFLGAVKKNPA 24 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~ 24 (231)
|++++.++- .+||+-++-||+
T Consensus 31 ~pnLtEeQr---ngfI~slkddPs 51 (70)
T 2kzi_A 31 LPNLNNQQK---RAFIRSLYDDPS 51 (70)
T ss_dssp CSSSCHHHH---HHHHHHHHHCGG
T ss_pred CCCcchhhh---hccccccccCcc
Confidence 567777665 899999999998
No 342
>1zxg_A Immunoglobulin G binding protein A; IGG-binding, phage display, immune system/protein binding complex; NMR {Staphylococcus aureus}
Probab=39.69 E-value=19 Score=21.11 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCC
Q psy13481 1 MSGLTPDAINKLQLFLGAVKKNPA 24 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~ 24 (231)
|+++++++- .+||+-++-||+
T Consensus 19 ~pnltEeqr---ngyI~slkddPs 39 (59)
T 1zxg_A 19 MPNLNEDQR---NAFIQSLKDDPS 39 (59)
T ss_dssp STTCCSSHH---HHHHHHHHHCST
T ss_pred CCCcchhhh---cccccccccCcc
Confidence 556666655 789999999998
No 343
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=38.77 E-value=1.2e+02 Score=22.74 Aligned_cols=72 Identities=8% Similarity=-0.099 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181 (231)
Q Consensus 109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~ 181 (231)
++.-...|...+... ..++..++.+.|...... .-..+.+|..-|..+...|+|.+|...|+.+++.+..-.
T Consensus 76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344455555555443 234477888888887765 456789999999999999999999999999999875443
No 344
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=38.04 E-value=67 Score=27.29 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHhhCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481 163 PNACIRDCSVALKINPD-------------SAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210 (231)
Q Consensus 163 ~~~Ai~~~~~al~~~p~-------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 210 (231)
|+..+.+++.|+..-|. ...++..++.+|..+|+|++|......++..
T Consensus 160 y~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 160 YQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 56677788887765331 2347888999999999999999999998864
No 345
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=37.48 E-value=24 Score=20.44 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=20.5
Q ss_pred HHHHHH-HHHHhhCCCCCChhhhhhHHHHHHHc
Q psy13481 10 NKLQLF-LGAVKKNPAIFYLPELKFFKDFVESY 41 (231)
Q Consensus 10 ~~~~~~-~~~~~~~p~~l~~~~~~~~~~~~~~~ 41 (231)
..|+.| +++|+.+|+.+ +.|..+|+..+
T Consensus 12 ~lL~~f~~evlr~qP~Di----~~Faa~YF~~L 40 (54)
T 2izy_A 12 ELLQGYTVEVLRQQPPDL----VDFAVEYFTRL 40 (54)
T ss_dssp HHHHHHHHHHHHHCCSCH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCH----HHHHHHHHHHH
Confidence 345555 46899999966 88888887654
No 346
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=37.48 E-value=94 Score=26.78 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 144 PSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
.+...++..+|.+|+..++|++|+..++++|..
T Consensus 179 ~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 179 ATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344678889999999999999999999999974
No 347
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.05 E-value=33 Score=25.92 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=33.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIR 168 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~ 168 (231)
.-.+++++|.|++|.+.+++.+..++.+......|..+-.+...|..-+.
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 33678899999999999999998888777777777766655555444333
No 348
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=36.16 E-value=26 Score=19.81 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=20.2
Q ss_pred HHHHH-HHHHhhCCCCCChhhhhhHHHHHHHc
Q psy13481 11 KLQLF-LGAVKKNPAIFYLPELKFFKDFVESY 41 (231)
Q Consensus 11 ~~~~~-~~~~~~~p~~l~~~~~~~~~~~~~~~ 41 (231)
.|+.| .++|+.+|+.+ +.|..+|+..+
T Consensus 18 lL~~~~~evlr~qP~Di----~~Faa~yF~~l 45 (50)
T 2kyg_A 18 LLQGYTVEVLRQQPPDL----VEFAVEYFTRL 45 (50)
T ss_dssp HHHHHHHHHHHHCCSCH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCH----HHHHHHHHHHH
Confidence 45555 46899999966 88888887654
No 349
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=34.96 E-value=1.1e+02 Score=26.27 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCC------------------------hHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHH
Q psy13481 147 ALLYAKRGQSYLQLSK------------------------PNACIRDCSVALKINPD----------SAAAYKFRGRAYR 192 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~------------------------~~~Ai~~~~~al~~~p~----------~~~~~~~lg~~~~ 192 (231)
+++++.||.+|+.+=+ |+..+.+++.|+..-|. -..++..+|.+|.
T Consensus 129 gEA~flRA~~Yf~Lv~~fG~VPl~~~~~~~~~~R~s~~evy~~I~~DL~~A~~~Lp~~~~~~~gr~tk~aA~allArvyL 208 (527)
T 3ckc_A 129 AEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYL 208 (527)
T ss_dssp HHHHHHHHHHHHHHHHHHSEEEECSSCSSSCCEEEEHHHHHHHHHHHHHHHGGGSCCTTCSCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccCCccccCCCcCCHHHHHHHHHHHHHHHHHhCccCCCCCCCcHHHHHHHHHHHHHHH
Confidence 6778888888877543 57788899999876553 1347888888888
Q ss_pred Hc------CCHHHHHHHHHHHHh
Q psy13481 193 LL------GKWEEAAVDLRNACK 209 (231)
Q Consensus 193 ~~------g~~~~A~~~~~~al~ 209 (231)
.. ++|++|......++.
T Consensus 209 ~~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 209 NAGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp THHHHHSSCCHHHHHHHHHHHHT
T ss_pred hhhhccCchhHHHHHHHHHHHHh
Confidence 65 899999999999985
No 350
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=39.56 E-value=8.9 Score=34.67 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy13481 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA 200 (231)
Q Consensus 149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 200 (231)
....+|...+..|+|.-|.+.++.++..+|+|..+...++.+|..+|.-.+.
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 4445677788899999999999999999999999999999999999865553
No 351
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.24 E-value=1e+02 Score=26.22 Aligned_cols=34 Identities=3% Similarity=-0.166 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 143 NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
.++...++..+|.+|+..++|++|+..++++|..
T Consensus 193 r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 193 LFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 4455678889999999999999999999999965
No 352
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=32.59 E-value=1e+02 Score=19.98 Aligned_cols=29 Identities=10% Similarity=0.112 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 148 LLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
.....-|.-+++.++|.+|...|+++..+
T Consensus 54 r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 54 RSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 33344445555555555555555555543
No 353
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=32.16 E-value=91 Score=26.47 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481 143 NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177 (231)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~ 177 (231)
.++...++..+|.+|+.+++|++|+..++.++...
T Consensus 187 r~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~~ 221 (460)
T 3snx_A 187 KPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKGY 221 (460)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred ccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34557788899999999999999999999998754
No 354
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=30.31 E-value=82 Score=26.89 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481 144 PSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175 (231)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~ 175 (231)
++...++..+|.+|+..++|++|+..+++++.
T Consensus 177 ~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 177 PTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34467888899999999999999999998874
No 355
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=30.26 E-value=93 Score=26.74 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCC-------------------------hHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHH
Q psy13481 147 ALLYAKRGQSYLQLSK-------------------------PNACIRDCSVALKINPDSAA---------AYKFRGRAYR 192 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~-------------------------~~~Ai~~~~~al~~~p~~~~---------~~~~lg~~~~ 192 (231)
+++++.||.+|+.+=+ |+..+.+++.|+..-|.... ++..++.+|.
T Consensus 120 aEa~flRA~~Yf~L~~~~G~VP~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~~gr~tk~aA~allarvyL 199 (499)
T 3jys_A 120 AQARFNRAFAYYVLMDMFALPPFITEKNYSIEPAPLSREDLFNWIEAELNEIKPNLPSPRSEYGVADQAVASALLARMYL 199 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCBCCCTTSCCSSCCBCCHHHHHHHHHHHHHHHGGGSCCTTSSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCceecccCCCCCCCcCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCcCHHHHHHHHHHHHH
Q ss_pred ------HcCCHHHHHHHHHHHH
Q psy13481 193 ------LLGKWEEAAVDLRNAC 208 (231)
Q Consensus 193 ------~~g~~~~A~~~~~~al 208 (231)
..++|++|+....+++
T Consensus 200 ~~~~y~~~~~~~~A~~~a~~vi 221 (499)
T 3jys_A 200 NAEIYTGKARYTECINACNEVI 221 (499)
T ss_dssp THHHHHSSCCHHHHHHHHHHHH
T ss_pred hhhhccChhHHHHHHHHHHHHH
No 356
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=30.01 E-value=32 Score=23.38 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCCCChhhhhhHHHHHHHcCC
Q psy13481 1 MSGLTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGG 43 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~g~ 43 (231)
|+.+++++++.++..-..+..|.+= .-...-|+.++..+|.
T Consensus 1 ~~~ls~~~~~~l~~~F~~~D~d~~G--~i~~~el~~~l~~~g~ 41 (151)
T 1w7j_B 1 MIEFNKDQLEEFKEAFELFDRVGDG--KILYSQCGDVMRALGQ 41 (151)
T ss_dssp ----------CHHHHHHHHCCSSSS--EEESTTHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCC--cCcHHHHHHHHHHcCC
Confidence 6789999999999999999887662 2234446677777775
No 357
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A
Probab=29.82 E-value=35 Score=22.29 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=18.4
Q ss_pred HHHHHhhCCCCCChhhhhhHHHHHHHc
Q psy13481 15 FLGAVKKNPAIFYLPELKFFKDFVESY 41 (231)
Q Consensus 15 ~~~~~~~~p~~l~~~~~~~~~~~~~~~ 41 (231)
.+++|...|+.. +.|+++|+..+
T Consensus 57 tv~Ll~~RPeDP----v~FLaeYF~kL 79 (95)
T 4f9k_A 57 IVHLCISKPERP----MKFLREHFEKL 79 (95)
T ss_dssp HHHHHHHCCSCH----HHHHHHHHHHH
T ss_pred HHHHHHHCCCCH----HHHHHHHHHHH
Confidence 467888899855 99999998765
No 358
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=29.56 E-value=1.6e+02 Score=23.67 Aligned_cols=63 Identities=16% Similarity=0.058 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHH---------------H-h---hCCCCHHHHHHHHH-HHHHcCCHHHHHHHHH
Q psy13481 146 SALLYAKRGQSYLQLSKPNACIRDCSVA---------------L-K---INPDSAAAYKFRGR-AYRLLGKWEEAAVDLR 205 (231)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~a---------------l-~---~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~ 205 (231)
++..+..+|..|.+-+++.+|..+|-.. . . -.|.....+..++. .|..+|+...|...|.
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~ 212 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKD 212 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4566666666666666666666655211 0 1 12222344455554 4677888888888877
Q ss_pred HHH
Q psy13481 206 NAC 208 (231)
Q Consensus 206 ~al 208 (231)
...
T Consensus 213 ~f~ 215 (312)
T 2wpv_A 213 IFL 215 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 359
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=28.72 E-value=38 Score=21.94 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHh
Q psy13481 128 KFEDAVNAYSEAIKL 142 (231)
Q Consensus 128 ~~~~Ai~~~~~al~~ 142 (231)
.|..|..+..++|..
T Consensus 12 ~h~~AF~~Is~aL~~ 26 (89)
T 3eab_A 12 FHKQAFEYISIALRI 26 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555555554
No 360
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=28.67 E-value=1e+02 Score=23.75 Aligned_cols=46 Identities=13% Similarity=-0.054 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHH
Q psy13481 161 SKPNACIRDCSVALKINPDSAA---AYKFRGRAYRL-LGKWEEAAVDLRNAC 208 (231)
Q Consensus 161 ~~~~~Ai~~~~~al~~~p~~~~---~~~~lg~~~~~-~g~~~~A~~~~~~al 208 (231)
+-|.+|...... .+.|.||- ...+.+..|+. +|+.++|+..-++|+
T Consensus 151 ~aY~~A~~iA~~--~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~af 200 (234)
T 2br9_A 151 VAYKAASDIAMT--ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 200 (234)
T ss_dssp HHHHHHHHHHHH--HSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--cCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 335555554432 45666653 22334444433 677777766655555
No 361
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=28.61 E-value=1.2e+02 Score=20.62 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHh--hCCCCCChhhhhhHHHHHHHcCC
Q psy13481 2 SGLTPDAINKLQLFLGAVK--KNPAIFYLPELKFFKDFVESYGG 43 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--~~p~~l~~~~~~~~~~~~~~~g~ 43 (231)
+.+++++++.|+..-..+. .|.+ ..-...-|+.++..+|.
T Consensus 1 s~ls~~~~~~l~~~F~~~D~~~d~~--G~i~~~el~~~l~~lg~ 42 (159)
T 2ovk_C 1 SQLTKDEIEEVREVFDLFDFWDGRD--GDVDAAKVGDLLRCLGM 42 (159)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSS--SEEEGGGHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCC--CCCcHHHHHHHHHHcCC
Confidence 3689999999999999998 7665 22345567778888875
No 362
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=28.12 E-value=54 Score=15.37 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhh
Q psy13481 6 PDAINKLQLFLGAVKK 21 (231)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (231)
.++|-+|++-|+.+|.
T Consensus 6 kdevgelkgevralkd 21 (27)
T 3v86_A 6 KDEVGELKGEVRALKD 21 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHH
Confidence 4678888888887764
No 363
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=28.08 E-value=1e+02 Score=21.81 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
...+..+...|..+...|+++.|.-.|-+.+.+
T Consensus 37 lrta~~llr~A~~y~~egd~e~AYily~R~~~L 69 (146)
T 2xze_A 37 FRSGVEIIRMASIYSEEGNIEHAFILYNKYITL 69 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456788889999999999999999998886554
No 364
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=27.77 E-value=40 Score=23.59 Aligned_cols=36 Identities=11% Similarity=0.257 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCCCChhhhhhHHHHHHHcCC
Q psy13481 1 MSGLTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGG 43 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~g~ 43 (231)
+|++|++++..++.....++.+. ..||..++...+.
T Consensus 4 ~m~Ls~~~~~~v~~sw~~v~~~~-------~~~~~rlF~~~P~ 39 (150)
T 1x46_A 4 WVDMEAGDIALVKSSWAQIHDKE-------VDILYNFFKSYPA 39 (150)
T ss_dssp CCCCCHHHHHHHHHHHHTTTTCH-------HHHHHHHHHHCHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHCHH
Confidence 46899999999999999998765 7888888776643
No 365
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=27.16 E-value=1.1e+02 Score=21.19 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCC-CCChhhhhhHHHHHHHcCCC
Q psy13481 2 SGLTPDAINKLQLFLGAVKKNPA-IFYLPELKFFKDFVESYGGT 44 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~-~l~~~~~~~~~~~~~~~g~~ 44 (231)
..+|.++|++||..-.++..|-+ .+. ..-|+..+.++|..
T Consensus 8 ~~Lt~~qi~elk~~F~~~D~d~dG~I~---~~El~~~l~~lg~~ 48 (153)
T 3i5g_B 8 VKLSQRQMQELKEAFTMIDQDRDGFIG---MEDLKDMFSSLGRV 48 (153)
T ss_dssp TTCCHHHHHHHHHHHHHHCCSTTSCCC---HHHHHHHHHHTTSC
T ss_pred cCCCHHHHHHHHHHHHHHCCCCCCeEc---HHHHHHHHHHcCCC
Confidence 35899999999999999988766 343 44456778888863
No 366
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=27.09 E-value=49 Score=19.24 Aligned_cols=21 Identities=19% Similarity=0.548 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCC
Q psy13481 1 MSGLTPDAINKLQLFLGAVKKNPA 24 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~ 24 (231)
|+.++.++- .+||+-+|-||+
T Consensus 16 lpnLtEeqR---n~yI~slkdDPs 36 (57)
T 3qwo_C 16 LPNLNEEQR---SAFLSSINDDPS 36 (57)
T ss_dssp CTTCCHHHH---HHHHHHHHHCGG
T ss_pred CCCcchhhc---cchHhhhccCcc
Confidence 556666543 578999999998
No 367
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=26.67 E-value=1.5e+02 Score=20.29 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
..++.+......|..++..|.|+.|.-...+|++.
T Consensus 11 ~~~~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~Ek 45 (135)
T 1o3u_A 11 HHMDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEK 45 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 35677888888999999999999998888888765
No 368
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=25.60 E-value=20 Score=19.86 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhCCCCC
Q psy13481 11 KLQLFLGAVKKNPAIF 26 (231)
Q Consensus 11 ~~~~~~~~~~~~p~~l 26 (231)
+-.+.+.++++||.++
T Consensus 18 qqqqvl~ILksnPqLM 33 (47)
T 1zoq_C 18 QQQQVLNILKSNPQLM 33 (47)
T ss_dssp HHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHcCHHHH
Confidence 3446778888888765
No 369
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=25.52 E-value=1.1e+02 Score=18.22 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCC-CCChhhhhhHHHHHHHcCC
Q psy13481 2 SGLTPDAINKLQLFLGAVKKNPA-IFYLPELKFFKDFVESYGG 43 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~-~l~~~~~~~~~~~~~~~g~ 43 (231)
..|+++++..++..-..+..|.+ .+. ..-|+..+..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~---~~el~~~l~~~g~ 45 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAP---VSDTMDMLTKLGQ 45 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBC---HHHHHHHHHHTSC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCc---HHHHHHHHHHHcC
Confidence 35788999999999999887765 333 4445667777775
No 370
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=25.10 E-value=1.6e+02 Score=25.39 Aligned_cols=32 Identities=6% Similarity=0.027 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481 145 SSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176 (231)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~ 176 (231)
+...++..+|.+++..++|++|+..++.+|..
T Consensus 196 tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 196 CKQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 44678889999999999999999999999974
No 371
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=25.04 E-value=15 Score=28.89 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
..|..+...|..+=+.|+|.+|+.+|..++..
T Consensus 21 ~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 21 TAAATVLKRAVELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34666777888888899999999999998875
No 372
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=24.80 E-value=73 Score=22.33 Aligned_cols=40 Identities=8% Similarity=-0.038 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCCCChhhhhhHHHHHHHcCC
Q psy13481 1 MSGLTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGG 43 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~g~ 43 (231)
|+++|+++++.++.....++.+.. .-...||..++...+.
T Consensus 6 ~m~Ls~~~~~~I~~sw~~v~~~~~---~~g~~~y~rlF~~~P~ 45 (154)
T 4b4y_A 6 AMQVSEEQQSLIMEDVQVLLPNYD---DFVEDVLQQFMEENPE 45 (154)
T ss_dssp CCCCCHHHHHHHHHHHHHHGGGHH---HHHHHHHHHHHHHCTT
T ss_pred cCCCCHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHCHh
Confidence 678999999999999999998643 3456778777776643
No 373
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=24.70 E-value=1.5e+02 Score=20.89 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
...+..++..|..+...||.+.|--+|-+.+.+
T Consensus 39 ~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L 71 (144)
T 2a9u_A 39 VHSALKIFKTAEECRLDRDEERAYVLYMKYVTV 71 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788889999999999999999888886544
No 374
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=24.08 E-value=1.4e+02 Score=19.96 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHHhh--CCCCCChhhhhhHHHHHHHcCC
Q psy13481 2 SGLTPDAINKLQLFLGAVKK--NPAIFYLPELKFFKDFVESYGG 43 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~p~~l~~~~~~~~~~~~~~~g~ 43 (231)
+.+++++++.|+..-..+.. |.+= .-...-|+.++.++|.
T Consensus 1 ~~ls~~~~~~l~~~F~~~D~~~d~~G--~i~~~el~~~l~~~g~ 42 (156)
T 1wdc_C 1 PKLSQDEIDDLKDVFELFDFWDGRDG--AVDAFKLGDVCRCLGI 42 (156)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTCSSS--CEEGGGHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHccCCCCCC--CCcHHHHHHHHHHcCC
Confidence 35899999999999999988 7652 2235556777888875
No 375
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=23.79 E-value=1.4e+02 Score=23.42 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=7.9
Q ss_pred cCChHHHHHHHHHHH
Q psy13481 160 LSKPNACIRDCSVAL 174 (231)
Q Consensus 160 ~~~~~~Ai~~~~~al 174 (231)
+++.++|+...++|+
T Consensus 191 ln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 191 LNSPDRACNLAKQAF 205 (260)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 455555555555444
No 376
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=23.68 E-value=1.2e+02 Score=20.97 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142 (231)
Q Consensus 113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~ 142 (231)
+..+...|..++..||..+|-+.|-+|+..
T Consensus 7 Ae~yL~EA~ell~kGD~vQAsEK~ykAaee 36 (129)
T 2jpu_A 7 AEVYYEEAEEFLSKGDLVQACEKYYKAAEE 36 (129)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 678889999999999999999998888754
No 377
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=21.62 E-value=1.7e+02 Score=22.80 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=6.1
Q ss_pred cCChHHHHHHHHHH
Q psy13481 160 LSKPNACIRDCSVA 173 (231)
Q Consensus 160 ~~~~~~Ai~~~~~a 173 (231)
+++.+.|....++|
T Consensus 187 ln~~~~Ac~lAk~A 200 (248)
T 3uzd_A 187 QNAPEQACHLAKTA 200 (248)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 34444444444433
No 378
>3iv0_A SUSD homolog; NP_809186.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.61 E-value=1.4e+02 Score=25.32 Aligned_cols=46 Identities=11% Similarity=0.006 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHhh------CCC-------------CHHHHHHHHHHHHHcCC---------HHHHHHHHHHHH
Q psy13481 163 PNACIRDCSVALKI------NPD-------------SAAAYKFRGRAYRLLGK---------WEEAAVDLRNAC 208 (231)
Q Consensus 163 ~~~Ai~~~~~al~~------~p~-------------~~~~~~~lg~~~~~~g~---------~~~A~~~~~~al 208 (231)
|+..+.+++.|+.. -|. -..++..+|.+|...+. |++|......++
T Consensus 166 y~~I~~DL~~A~~~~~~~~~Lp~~~~~~~~~~gR~tk~aA~allarvyL~~~~~~~~~~~~~~~~a~~~a~~vi 239 (481)
T 3iv0_A 166 LQNCLADLQPLLDDDPGAEVLPWSYSSYSSKGIRASRGSVIALMMHINLWLVQFDAQNKEQYYRNVVSLGEELE 239 (481)
T ss_dssp HHHHHHHHHHHHHTCTTSCSSCSCCSSTTTTTTSCCHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccccCCCccccCcccCCccCHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHH
Confidence 67788889999887 442 12467788888877654 788888888777
No 379
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=21.56 E-value=1.6e+02 Score=20.36 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHhh--CC-CCCChhhhhhHHHHHHHcCCC
Q psy13481 3 GLTPDAINKLQLFLGAVKK--NP-AIFYLPELKFFKDFVESYGGT 44 (231)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~--~p-~~l~~~~~~~~~~~~~~~g~~ 44 (231)
-+|+++|++||..-.+... |- ..+. ..-|+..+.++|..
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~---~~El~~~lr~lG~~ 43 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVD---AAKVGDLLRCLGMN 43 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEE---GGGHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeEC---HHHHHHHHHHcCCC
Confidence 5899999999998888864 32 2443 44456678888863
No 380
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=21.51 E-value=1.3e+02 Score=19.22 Aligned_cols=41 Identities=7% Similarity=0.077 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCCCChhhhhhHHHHHHHcCCCC
Q psy13481 3 GLTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTI 45 (231)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~g~~~ 45 (231)
.++.+++++|+..-+.+..|-+ ..-+..-|+..+..+|..+
T Consensus 29 ~l~~~~~~el~~~F~~~D~d~~--G~I~~~El~~~l~~lg~~~ 69 (100)
T 2lv7_A 29 DIPEDELEEIREAFKVFDRDGN--GFISKQELGTAMRSLGYMP 69 (100)
T ss_dssp CCCGGGHHHHHHHHHHTCSSCS--SCBCHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHHcCCCC--CcCCHHHHHHHHHHhCCCC
Confidence 4788999999999999988766 2233455677788888643
No 381
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=21.34 E-value=1.7e+02 Score=22.96 Aligned_cols=45 Identities=13% Similarity=-0.048 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHH
Q psy13481 162 KPNACIRDCSVALKINPDSAA---AYKFRGRAYRL-LGKWEEAAVDLRNAC 208 (231)
Q Consensus 162 ~~~~Ai~~~~~al~~~p~~~~---~~~~lg~~~~~-~g~~~~A~~~~~~al 208 (231)
-|++|...... .+.|.||- ...+.+..|+. +++.++|+..-++|+
T Consensus 178 aY~~A~~iA~~--~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 178 AYKAASDIAMT--ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHH--HSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555544432 45566653 22334444333 567777666555554
No 382
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=21.26 E-value=1.7e+02 Score=18.70 Aligned_cols=28 Identities=4% Similarity=0.227 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481 110 IDKSNEKKREAIHAYNDGKFEDAVNAYS 137 (231)
Q Consensus 110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~ 137 (231)
.+.+..++.-|..++..|++..|+..+.
T Consensus 36 l~mA~~Y~~Da~~fl~kGD~v~Ala~is 63 (87)
T 2pmr_A 36 VERALNYRDDSVYYLEKGDHITSFGCIT 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344455555555555555555554443
No 383
>2xuv_A HDEB, 10K-L protein; unknown function; HET: MLY; 1.50A {Escherichia coli}
Probab=21.09 E-value=1e+02 Score=19.37 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHHhhCCCCC
Q psy13481 4 LTPDAINKLQLFLGAVKKNPAIF 26 (231)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~l 26 (231)
+.+.+....-.+++.|+.+|+.-
T Consensus 43 ~~~~e~~~~Pkvie~Ckk~P~~s 65 (79)
T 2xuv_A 43 LNETDLTQIPXVIEYCXXNPQXN 65 (79)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSB
T ss_pred hhhhhhhcccHHHHHHhcCCcch
Confidence 34445555788999999999954
No 384
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=20.98 E-value=1.7e+02 Score=18.64 Aligned_cols=30 Identities=7% Similarity=-0.004 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYS 137 (231)
Q Consensus 108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~ 137 (231)
+-.+.+..++.-|..++..|++..|+..+.
T Consensus 30 ~~l~mA~~Y~~Da~~fl~kGD~v~Ala~is 59 (86)
T 2oo2_A 30 GFMRNIEAYISDSRYFLEKGDLVRAFECVV 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445556666667777777777777766654
No 385
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=20.86 E-value=1.2e+02 Score=17.52 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHhhCCCCCChhhhhhHHHHHHHcCC
Q psy13481 4 LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGG 43 (231)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~g~ 43 (231)
|++++++.++..-..+..|.+ ..-...-++.++..+|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~--G~i~~~el~~~l~~~g~ 38 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKT--GSIDYHELKVAMRALGF 38 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSS--SEEEHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCCCC--CCCcHHHHHHHHHHhCC
Confidence 578899999999998887765 22334556667777764
No 386
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=20.76 E-value=75 Score=23.05 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481 132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178 (231)
Q Consensus 132 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p 178 (231)
|+..+..+...+|....+...+..++..+.+....+..|...+..+|
T Consensus 75 a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP 121 (175)
T 4abx_A 75 AVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADP 121 (175)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 44444444444555555666666666666666655555555555555
No 387
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=20.72 E-value=1.7e+02 Score=20.20 Aligned_cols=74 Identities=14% Similarity=-0.052 Sum_probs=50.2
Q ss_pred HHHHHHHcCChHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---HHHHHHHHhhchh
Q psy13481 153 RGQSYLQLSKPNACIRDCSVA---LKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD---EQADEWLKEVTPN 226 (231)
Q Consensus 153 la~~~~~~~~~~~Ai~~~~~a---l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~l~~~~~~ 226 (231)
-+.+++..++....+..+... ++..|... .....+...-.+..+|..++++..+-... +.++..+..|..+
T Consensus 46 ASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~---~E~sF~~~fG~~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~~Vf~r 122 (126)
T 2npu_A 46 ASRLYFGERNVKGMFEVLEPLHAMMERGPQTL---KETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRR 122 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHccCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Confidence 356677888888888888766 55556544 33444444445678888888888754432 4688888888887
Q ss_pred hhc
Q psy13481 227 KLN 229 (231)
Q Consensus 227 ~~k 229 (231)
+.+
T Consensus 123 I~k 125 (126)
T 2npu_A 123 ISK 125 (126)
T ss_dssp HHC
T ss_pred Hhc
Confidence 765
No 388
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.59 E-value=2.9e+02 Score=22.37 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=41.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----------------------CC-C-------------------------C---
Q psy13481 119 EAIHAYNDGKFEDAVNAYSEAIKL-----------------------NP-S-------------------------S--- 146 (231)
Q Consensus 119 ~a~~~~~~~~~~~Ai~~~~~al~~-----------------------~p-~-------------------------~--- 146 (231)
.+..+...|.|+.|+.++++-+.+ .| . +
T Consensus 34 laadhvAAGsFetAm~lLnrQvGivnf~PLk~~F~~~y~~s~~~l~~~~~~lp~l~~~~~r~~~e~~~~~~lP~i~~l~~ 113 (325)
T 3mv2_A 34 LPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSEDQILPYVPGLDV 113 (325)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHHCBCCCGGGHHHHHHHHHHTEEEECCSSTTSCCEEEECBSSCSSSCGGGCCBCCCCHHH
T ss_pred cHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhcccCCCCCCcchhhhcCCccccccccCCCCCCCHHH
Confidence 477889999999999999987643 12 0 0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481 147 ALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177 (231)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~ 177 (231)
.......|.-++..|++.+|+..|+.+|..-
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i 144 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRI 144 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 1123345777788888888888888777654
No 389
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=20.58 E-value=61 Score=18.09 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhCCCCCChhhhhhHHHHHHHcC
Q psy13481 10 NKLQLFLGAVKKNPAIFYLPELKFFKDFVESYG 42 (231)
Q Consensus 10 ~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~g 42 (231)
|-+..++=++|.|++.+ -..-+.|+.|+.
T Consensus 13 Ql~qal~hLiknD~~Fl----~~iHeAYl~sl~ 41 (46)
T 2wx4_A 13 QFVQAFTYLIQNDKEFA----NKLHKAYLNGCS 41 (46)
T ss_dssp HHHHHHHHHHHHCTTHH----HHHHHHHHC---
T ss_pred HHHHHHHHHHHcCHHHH----HHHHHHHHHHHH
Confidence 45678899999999966 233456666654
No 390
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.53 E-value=92 Score=23.84 Aligned_cols=44 Identities=5% Similarity=-0.171 Sum_probs=32.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy13481 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKW 197 (231)
Q Consensus 154 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 197 (231)
-.++.+.|.|++|...+++.+.-++.+......|..+-....-+
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~ 164 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLA 164 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcc
Confidence 34567899999999999999988777776666666665555543
No 391
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=20.26 E-value=1.6e+02 Score=19.80 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCC-CCChhhhhhHHHHHHHcCC
Q psy13481 2 SGLTPDAINKLQLFLGAVKKNPA-IFYLPELKFFKDFVESYGG 43 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~-~l~~~~~~~~~~~~~~~g~ 43 (231)
..+++++++.|+..-..+..|.+ .+ ...-|+.++..+|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i---~~~el~~~l~~~g~ 49 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFV---SKEDIKAISEQLGR 49 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSC---CHHHHHHHHHHHSS
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcC---cHHHHHHHHHHhCC
Confidence 46899999999999999988766 33 34455667777775
Done!