RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13481
(231 letters)
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 105 bits (264), Expect = 9e-29
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS 161
D ++ + ++ E K +A + +E+A+ YS+AI+LNPS+A+ Y R +YL+
Sbjct: 2 DEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE 61
Query: 162 KPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWL 220
+ D + A++++ Y R + LGK+ A D K+ D+ A
Sbjct: 62 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121
Query: 221 KEVT 224
+E
Sbjct: 122 QECN 125
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 103 bits (258), Expect = 3e-28
Identities = 27/109 (24%), Positives = 51/109 (46%)
Query: 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNAC 166
+ E K + + K+ +A Y AI NP A+ Y R YL++ +P
Sbjct: 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62
Query: 167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
+ DC AL+++ S A+ F G+ + ++EA +L+ A + +++
Sbjct: 63 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111
Score = 27.3 bits (61), Expect = 2.8
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162
+++A+ A L L + S L+++K
Sbjct: 91 ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 105 bits (262), Expect = 2e-27
Identities = 27/107 (25%), Positives = 52/107 (48%)
Query: 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC 170
+ E K + + K+ +A Y AI NP A+ Y R YL++ +P + DC
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
Query: 171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQAD 217
AL+++ S A+ F G+ + ++EA +L+ A + +++ +
Sbjct: 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 99.2 bits (248), Expect = 7e-27
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKP 163
S + D + K + + G + A+ Y+EAIK NP A LY+ R Y +L +
Sbjct: 7 HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF 66
Query: 164 NACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKE 222
++DC +++ P Y + A + + +A + A +D ++A + +
Sbjct: 67 QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126
Query: 223 VT 224
Sbjct: 127 CM 128
Score = 49.2 bits (118), Expect = 5e-08
Identities = 11/66 (16%), Positives = 23/66 (34%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+F+ A+ E I+L P+ Y ++ + + + AL ++ A
Sbjct: 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
Query: 187 RGRAYR 192
R
Sbjct: 124 YQRCMM 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 98.8 bits (247), Expect = 1e-26
Identities = 35/108 (32%), Positives = 54/108 (50%)
Query: 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKP 163
SEED ++ K E FE AV+ Y +AI+LNP++A+ + R +Y +L
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 164 NACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
++DC A+ I+P + AY G A L K EA + A ++D
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110
Score = 34.1 bits (79), Expect = 0.010
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 110 IDKSNEK--KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162
ID + K R + + K +AV Y +A++L+P + + + L+L +
Sbjct: 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 99.4 bits (248), Expect = 2e-26
Identities = 20/126 (15%), Positives = 53/126 (42%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA 165
S +S++ K E A ++ A++ Y++A+ + P++ + + R +Y +
Sbjct: 4 SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEK 63
Query: 166 CIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
D +A ++P + A+ G A + ++ A + + + +D + +
Sbjct: 64 AAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123
Query: 226 NKLNLK 231
K ++
Sbjct: 124 TKRKIE 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 97.7 bits (244), Expect = 2e-26
Identities = 24/125 (19%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 101 TDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL 160
++ ++ + + + E+K + + G + A+ Y+EA+K +P +A+LY+ R +L
Sbjct: 1 SNARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL 60
Query: 161 SKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEW 219
+ + DC ++++ Y + + +W +A +A ++D +E+A E
Sbjct: 61 MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120
Query: 220 LKEVT 224
++
Sbjct: 121 VRNCL 125
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 97.0 bits (242), Expect = 5e-26
Identities = 28/112 (25%), Positives = 49/112 (43%)
Query: 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCS 171
K+ E + E + + +AV AY+E IK P A Y+ R + +L I DC+
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62
Query: 172 VALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223
A++ +P+ AY + A + ++ A L A D + +E+
Sbjct: 63 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
Score = 45.3 bits (108), Expect = 1e-06
Identities = 8/64 (12%), Positives = 25/64 (39%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
F +A+ ++AI+ +P+ Y ++ + + + + + + A + +
Sbjct: 52 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 111
Query: 187 RGRA 190
R
Sbjct: 112 REID 115
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 95.7 bits (239), Expect = 1e-25
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
+++ NE K + A + G +DA+ YSEAIKL+P + +LY+ R +Y + D
Sbjct: 1 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKEV 223
+ + PD Y + A L ++EEA K + + Q E L+ +
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 95.8 bits (239), Expect = 1e-25
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA 165
S D + +K AY FE A Y +AI+L+PS+ Y + Y + K
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60
Query: 166 CIRDCSVALKINPDSAAAYKF-------RGRAYRLLGKWEEAAVDLRNACKIDFDEQADE 218
C++ C A+++ ++ A YK G A++ A + D + +
Sbjct: 61 CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120
Query: 219 WLKEV 223
+KE+
Sbjct: 121 KVKEL 125
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 95.1 bits (237), Expect = 6e-25
Identities = 26/144 (18%), Positives = 60/144 (41%), Gaps = 5/144 (3%)
Query: 85 GVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP 144
G P + + ++E + G + A+ AY++A+ L+
Sbjct: 1 GSSGSSGMTVSGPGTPEP-RPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA 59
Query: 145 SS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA 201
+ A+L+ R +L+L + + S A++ + A R +A LG+ ++A
Sbjct: 60 TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAV 119
Query: 202 VDLRNACKID-FDEQADEWLKEVT 224
+DL+ ++ ++ E L+ ++
Sbjct: 120 LDLQRCVSLEPKNKVFQEALRNIS 143
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 95.9 bits (239), Expect = 3e-23
Identities = 22/105 (20%), Positives = 44/105 (41%)
Query: 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNAC 166
+ + + G+ DA++ + A+ +P + + Y +R +L + K A
Sbjct: 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79
Query: 167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ D + +++ D AA RG GK +EA D + K +
Sbjct: 80 LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124
Score = 89.0 bits (221), Expect = 9e-21
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA----LLYAKRGQSYLQLSKPNACI 167
K N+ A DG++ DA + Y +K PS A + + + KP I
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315
Query: 168 RDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
R CS L++ PD+ A K R AY + ++EA D A + +
Sbjct: 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359
Score = 83.2 bits (206), Expect = 8e-19
Identities = 22/103 (21%), Positives = 46/103 (44%)
Query: 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIR 168
D+ + +A++A+ G + A+ + +++ A L R + +++ +P I
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198
Query: 169 DCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
D A K+ D+ A+ Y LG E + ++R K+D
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241
Score = 70.9 bits (174), Expect = 1e-14
Identities = 19/92 (20%), Positives = 38/92 (41%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
D K +A+ SE +++ P + R ++YL + I+D A + N +
Sbjct: 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
+ +A RLL + ++ K + +Q
Sbjct: 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397
Score = 68.2 bits (167), Expect = 1e-13
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G+ A++ A KL + + K Y QL + + LK++ D +
Sbjct: 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250
Query: 187 RGRAYRL------------LGKWEEAAVDLRNACKID 211
+ +L G++ +A + K +
Sbjct: 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287
Score = 63.2 bits (154), Expect = 6e-12
Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 16/104 (15%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYA------------KRGQSYLQLSKPNACIRDCS 171
Y G E +++ E +KL+ +A + + ++ +
Sbjct: 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281
Query: 172 VALKINPDSAA----AYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+K P A + + + K EA +++
Sbjct: 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325
Score = 62.0 bits (151), Expect = 2e-11
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
GK + A+ ++ I+L +RG L+ K + D LK NP +
Sbjct: 74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
Query: 187 ---------------RGRAYRLLGKWEEAAVDLRNACKID 211
+ G + A L ++
Sbjct: 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173
Score = 54.3 bits (131), Expect = 7e-09
Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 11/88 (12%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
+ + ++ + ++ G+ L + + A+ +PD+ A
Sbjct: 14 GTENLYFQSMADVEKHLE-----------LGKKLLAAGQLADALSQFHAAVDGDPDNYIA 62
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
Y R + +GK + A DL ++
Sbjct: 63 YYRRATVFLAMGKSKAALPDLTKVIQLK 90
Score = 48.5 bits (116), Expect = 6e-07
Identities = 12/95 (12%), Positives = 32/95 (33%), Gaps = 18/95 (18%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPN--------ACIRDCS---- 171
+ +++A+ Y A + N + + ++ L + R+
Sbjct: 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399
Query: 172 ------VALKINPDSAAAYKFRGRAYRLLGKWEEA 200
+AL+ +PD+ + + +A + A
Sbjct: 400 IKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 90.8 bits (226), Expect = 1e-21
Identities = 22/97 (22%), Positives = 41/97 (42%)
Query: 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVAL 174
+ G+ DA++ + A+ +P + + Y +R +L + K A + D + +
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 64
Query: 175 KINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ D AA RG GK +EA D + K +
Sbjct: 65 ALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101
Score = 90.8 bits (226), Expect = 1e-21
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA----LLYAKRGQSYLQLSKPNACI 167
K N+ A DG++ DA + Y +K PS A + + + KP I
Sbjct: 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292
Query: 168 RDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
R CS L++ PD+ A K R AY + ++EA D A + +
Sbjct: 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336
Score = 84.6 bits (210), Expect = 2e-19
Identities = 22/104 (21%), Positives = 46/104 (44%)
Query: 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
D+ + +A+ A++ + A+ + +++ A L R + +++ +P I D
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176
Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
A K+ D+ A+ Y LG E + ++R K+D D
Sbjct: 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220
Score = 72.3 bits (178), Expect = 4e-15
Identities = 17/76 (22%), Positives = 34/76 (44%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
D K +A+ SE +++ P + R ++YL + I+D A + N +
Sbjct: 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342
Query: 184 YKFRGRAYRLLGKWEE 199
+ +A RLL + ++
Sbjct: 343 REGLEKAQRLLKQSQK 358
Score = 69.6 bits (171), Expect = 4e-14
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 15/100 (15%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQ---------------SYLQLSKPNACIRDCS 171
GK ++A + + + +K NPS Q + A I
Sbjct: 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLD 144
Query: 172 VALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
L++ A + R + G+ +A DL+ A K+
Sbjct: 145 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 184
Score = 68.5 bits (168), Expect = 9e-14
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G+ A++ A KL + + K Y QL + + LK++ D +
Sbjct: 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227
Query: 187 RGRAYRL------------LGKWEEAAVDLRNACKID 211
+ +L G++ +A + K +
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264
Score = 67.3 bits (165), Expect = 2e-13
Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 16/104 (15%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYA------------KRGQSYLQLSKPNACIRDCS 171
Y G E +++ E +KL+ +A + + ++ +
Sbjct: 199 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258
Query: 172 VALKINPDSAA----AYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+K P A + + + K EA +++
Sbjct: 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302
Score = 63.4 bits (155), Expect = 5e-12
Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 15/100 (15%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
GK + A+ ++ I L +RG L+ K + D LK NP +
Sbjct: 51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110
Query: 187 RGR---------------AYRLLGKWEEAAVDLRNACKID 211
+ + A L ++
Sbjct: 111 ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150
Score = 27.2 bits (61), Expect = 4.9
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ G+ G+ +A A D
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD 33
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 85.4 bits (212), Expect = 1e-21
Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Query: 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCS 171
++ ++K AY F+ A+ Y +A +L+P++ + Y + N C C
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 172 VALKINPDSAA-------AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223
A+++ ++ AY G +Y K+++A + + ++
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 85.1 bits (211), Expect = 1e-21
Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
+ + ++K + + G + +AV+ Y + I P + + Y+ + + ++L + I+
Sbjct: 1 MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM 60
Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221
C L+ + YR L + A ++ + DE + + +
Sbjct: 61 CQQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVV-EVDELPEGYDR 110
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 85.3 bits (212), Expect = 3e-20
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 8/118 (6%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
+ E + + E + +AV AY+E IK P A Y+ R
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ +L I DC+ A++ +P+ AY + A + ++ A L A D
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237
Score = 81.4 bits (202), Expect = 8e-19
Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
K E Y +F++A+ Y++A +L+ L R + + + I + A++
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWELHKDITYLN-NRAAAEYEKGEYETAISTLNDAVEQ 67
Query: 177 NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
+ A YK +++ +G DL+ I++ +++
Sbjct: 68 GREMRADYKVISKSFARIGNAYHKLGDLKKT--IEYYQKSLTE 108
Score = 71.0 bits (175), Expect = 5e-15
Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 7/117 (5%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYNDG-------KFEDAVNAYSEAIKLNPSSALLYAKRG 154
+ D+ K+ E ++++ + E + +NP A G
Sbjct: 87 NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146
Query: 155 QSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ Y S ++ + +K P+ A Y R A L + EA D A + D
Sbjct: 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203
Score = 68.0 bits (167), Expect = 7e-14
Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
Y G++E A++ ++A++ Y +S+ ++ + D ++ S
Sbjct: 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
++ L E+ ++ E+A+E
Sbjct: 109 HR-TADILTKLRNAEKELKKAEAEAYVN-PEKAEEA 142
Score = 61.8 bits (151), Expect = 9e-12
Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 123 AYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
A F +A+ ++AI+ +P+ Y ++ + + + + + + A + +
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241
Query: 182 AAYKFRGRAYRLLGKWE 198
R +
Sbjct: 242 NGSSAREIDQLYYKASQ 258
Score = 43.7 bits (104), Expect = 2e-05
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 144 PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVD 203
S A G + + + + I + A +++ D R A G++E A
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAIST 60
Query: 204 LRNACKID 211
L +A +
Sbjct: 61 LNDAVEQG 68
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 86.3 bits (214), Expect = 1e-19
Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 2/143 (1%)
Query: 91 DEEEPIPDVATDIEVSEEDIDK-SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALL 149
PD+A +S + + K H + F +A+ Y AI+L+P+ +
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
Y+ Y+ I + AL+I PD + A R A LG + +A DL
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSL 121
Query: 210 I-DFDEQADEWLKEVTPNKLNLK 231
DFD + E + E NK +K
Sbjct: 122 NGDFDGASIEPMLERNLNKQAMK 144
Score = 76.7 bits (189), Expect = 2e-16
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 9/118 (7%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
++ ++ + +S ++Y ++ + +A+ LNP Y R
Sbjct: 258 NLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR 316
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
GQ Y L D A +NP++ Y GK+ E+
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374
Score = 75.1 bits (185), Expect = 6e-16
Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 8/118 (6%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
+ + + K+ + E Y +++A + +A LNP + Y +
Sbjct: 291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ K + P F G ++ A A +++
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408
Score = 70.1 bits (172), Expect = 3e-14
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYA----KRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
G + ++ L+PS YA RG + N I+ A++++P+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 183 AYKFRGRAYRLLGKWEEAAVDLRNACKID 211
Y Y G E+ A +I
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIK 89
Score = 66.7 bits (163), Expect = 4e-13
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 24/137 (17%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
SE +++ K G F+ A+ Y A +L ++
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418
Query: 154 G----------------QSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKW 197
G + L K NA I+ + A +++P S A + + K
Sbjct: 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI 478
Query: 198 EEAAVDLRNACKIDFDE 214
+EA ++ +
Sbjct: 479 DEAIELFEDSAILARTM 495
Score = 65.5 bits (160), Expect = 1e-12
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 24/134 (17%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
D + ++ED K+ E ++ Y GKF ++ ++E P+ +
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG----------------RAYRLLGKW 197
+ + I+ +A ++ + G K+
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 198 EEAAVDLRNACKID 211
A L AC++D
Sbjct: 445 NAAIKLLTKACELD 458
Score = 62.4 bits (152), Expect = 1e-11
Identities = 15/147 (10%), Positives = 47/147 (31%), Gaps = 2/147 (1%)
Query: 65 PEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAY 124
P ++ D L+ + V + + + ++ ++ D+ + +
Sbjct: 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT-K 220
Query: 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184
+ + ++A + L ++AL G + + ++ ++P +Y
Sbjct: 221 STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSY 279
Query: 185 KFRGRAYRLLGKWEEAAVDLRNACKID 211
F +E + A ++
Sbjct: 280 IFLALTLADKENSQEFFKFFQKAVDLN 306
Score = 59.7 bits (145), Expect = 1e-10
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177
+ ++ KF A+ ++A +L+P S Q LQ+ K + I + +
Sbjct: 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492
Query: 178 PDSAAAYKFRGRAYRLLGKWEEA 200
+ + K ++
Sbjct: 493 RTMDEKLQ--ATTFAEAAKIQKR 513
Score = 56.7 bits (137), Expect = 1e-09
Identities = 13/95 (13%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYL--QLSKPNACIRDCSVALKINPDSA 181
++ A S+A++ S+ L ++ + +V + ++A
Sbjct: 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243
Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQA 216
A + G + L +A V L+ + + +
Sbjct: 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNS 278
Score = 45.1 bits (107), Expect = 7e-06
Identities = 13/103 (12%), Positives = 34/103 (33%), Gaps = 17/103 (16%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
+ + + K+ E + A K ++A+ + ++ L + +
Sbjct: 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL--Q 500
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK 196
++ + +K L+ +P +A + YR G
Sbjct: 501 ATTFAEAAKIQK-------RLRADPIISAKMELTLARYRAKGM 536
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 85.5 bits (212), Expect = 2e-19
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIR 168
+ ++ E K +A + +E+A+ YS+AI+LNPS+A+ Y R +YL+ +
Sbjct: 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 61
Query: 169 DCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKEVT 224
D + A++++ Y R + LGK+ A D K+ D+ A +E
Sbjct: 62 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 118
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 83.0 bits (206), Expect = 8e-19
Identities = 23/94 (24%), Positives = 39/94 (41%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
A Y G FE A + + P + + + Q + + ++A+K NP
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
A AY G Y+ G+ +EA R+A ++ D
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Score = 76.4 bits (189), Expect = 2e-16
Identities = 21/91 (23%), Positives = 35/91 (38%)
Query: 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
+ + + + + + AIK NP A Y+ G Y + + I AL++ PD
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID 102
Query: 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
Y A G E A +A + + D
Sbjct: 103 GYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Score = 76.4 bits (189), Expect = 2e-16
Identities = 17/85 (20%), Positives = 35/85 (41%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G+ E+A Y +AI+ P+ A+ ++ G + + I A+ ++P+ AY
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
G + ++ A A +
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLS 233
Score = 76.0 bits (188), Expect = 2e-16
Identities = 20/85 (23%), Positives = 35/85 (41%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
F+ AV AY A+ L+P+ A+++ Y + + I A+++ P AY
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
A + G EA A ++
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLC 301
Score = 76.0 bits (188), Expect = 2e-16
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 1/90 (1%)
Query: 123 AYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
Y + G + A++ Y AI+L P Y + + + AL++ P A
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305
Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ R G EEA R A ++
Sbjct: 306 DSLNNLANIKREQGNIEEAVRLYRKALEVF 335
Score = 75.7 bits (187), Expect = 3e-16
Identities = 16/88 (18%), Positives = 34/88 (38%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
G+ A++ + +A+ L+P+ Y G + + + AL ++P+ A
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ Y G + A R A ++
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Score = 75.3 bits (186), Expect = 4e-16
Identities = 20/85 (23%), Positives = 37/85 (43%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G +A + Y+ A++L P+ A + +R AL++ P+ AAA+
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
+ GK +EA + + A +I
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRIS 369
Score = 74.9 bits (185), Expect = 6e-16
Identities = 20/88 (22%), Positives = 32/88 (36%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
G E AV AY A++ NP + + G L + A++ P+ A A
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ G + G+ A A +D
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Score = 74.5 bits (184), Expect = 7e-16
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 8/118 (6%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
++ S + ++ AY++ G+ ++A+ Y A++L P Y
Sbjct: 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ + ++ AL+ NPD G + LG+ EEA A +
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165
Score = 61.8 bits (151), Expect = 2e-11
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
G E+AV Y +A+++ P A ++ Q K + A++I+P A A
Sbjct: 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375
Query: 184 YKFRGRAYRLLG 195
Y G + +
Sbjct: 376 YSNMGNTLKEMQ 387
Score = 52.2 bits (126), Expect = 3e-08
Identities = 9/62 (14%), Positives = 17/62 (27%)
Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
+ Q A R C + PD+ + + + +A A K
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 210 ID 211
+
Sbjct: 62 QN 63
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 81.3 bits (201), Expect = 5e-18
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC 170
+ K + + + K++DA+ Y+ A++L + Y+ Y+ + +
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMS 62
Query: 171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC-KIDFDEQADEWLKEVTPNKLN 229
+ AL++ PD + R A LGK+ +A DL DF++ + E + E NK
Sbjct: 63 TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122
Query: 230 LK 231
+
Sbjct: 123 MS 124
Score = 76.3 bits (188), Expect = 2e-16
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 8/118 (6%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
D DK+ + Y ++ A + +A +L+P + Y +
Sbjct: 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ +K + C S A + P++ F +++A A +++
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402
Score = 73.6 bits (181), Expect = 2e-15
Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
D + EDI K+ E ++Y + N + +A+KL+ +++ +Y R
Sbjct: 252 DPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR 310
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
GQ L + +D A +++P++ Y K+++ A +
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368
Score = 72.5 bits (178), Expect = 5e-15
Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 17/131 (12%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
+ E ++ K EA N F+ A+ Y AI+L +Y
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412
Query: 154 GQSYLQ---------LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDL 204
+ + A K++P S A + +EA
Sbjct: 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472
Query: 205 RNACKIDFDEQ 215
+ + +
Sbjct: 473 EESADLARTME 483
Score = 67.1 bits (164), Expect = 3e-13
Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 17/127 (13%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
+ + + +D DK+ E E I Y KF+D +SEA + P + +
Sbjct: 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF 378
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR---------LLGKWEEAAVDL 204
+ + + ++ +A+++ Y + + EA L
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438
Query: 205 RNACKID 211
A K+D
Sbjct: 439 EKASKLD 445
Score = 64.8 bits (158), Expect = 2e-12
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 3/123 (2%)
Query: 91 DEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYND--GKFEDAVNAYSEAIKLNPSSAL 148
+ +E + +S E +A ++ FE+ ++ +E KL A+
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238
Query: 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208
G + P D A+++ P +Y + E A
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKAL 297
Query: 209 KID 211
K+D
Sbjct: 298 KLD 300
Score = 60.5 bits (147), Expect = 6e-11
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
Query: 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
K F +A N +A KL+P S Q LQ + I +
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477
Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAA 201
+ + + K ++
Sbjct: 478 LARTMEEKLQ--AITFAEAAKVQQRI 501
Score = 48.6 bits (116), Expect = 6e-07
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 2/97 (2%)
Query: 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ-LSKPNACIRDCSVAL 174
K Y++ E + L S Y K +S+ + + +
Sbjct: 172 KPELTFANYDE-SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230
Query: 175 KINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
K+ A + + G L A D++ A ++
Sbjct: 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267
Score = 47.4 bits (113), Expect = 2e-06
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 143 NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAV 202
AL +G + + K + I+ + AL++ D Y Y +G ++
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVE 60
Query: 203 DLRNACKID 211
A ++
Sbjct: 61 MSTKALELK 69
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 76.3 bits (188), Expect = 6e-18
Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 3/120 (2%)
Query: 103 IEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162
+SE+ +++ + Y GK++DA + L+ A + G L
Sbjct: 11 RGLSEDTLEQLYAL---GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67
Query: 163 PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKE 222
++ S ++ + + LG + A +A + + A E L
Sbjct: 68 YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127
Score = 54.7 bits (132), Expect = 8e-10
Identities = 13/68 (19%), Positives = 24/68 (35%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G +E A+ +YS ++ + + +LQL + A + A
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
Query: 187 RGRAYRLL 194
RA +L
Sbjct: 126 AARAGAML 133
Score = 50.5 bits (121), Expect = 2e-08
Identities = 11/77 (14%), Positives = 24/77 (31%)
Query: 135 AYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194
+ L+ + G + Q K + + ++ A + G + L
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 195 GKWEEAAVDLRNACKID 211
G +E+A +D
Sbjct: 66 GLYEQALQSYSYGALMD 82
Score = 37.0 bits (86), Expect = 0.001
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
++ D+ G GKW++A + C +D
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY 50
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 74.0 bits (182), Expect = 7e-17
Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 18/124 (14%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAI------------------KLNPSSA 147
++ + +++ + +++A++AY +A+ +L+ +
Sbjct: 4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNI 63
Query: 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
LYA Q YL + + S LK + A R +A K +EA DL+
Sbjct: 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL 123
Query: 208 CKID 211
+
Sbjct: 124 LRNH 127
Score = 40.8 bits (96), Expect = 8e-05
Identities = 11/59 (18%), Positives = 25/59 (42%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185
G +A SE +K ++ +R ++ + K + D + L+ +P +A+
Sbjct: 77 GDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA 135
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 74.5 bits (184), Expect = 2e-16
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 12/118 (10%)
Query: 106 SEEDIDKSNEKKREAIHAYND------------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
S S+ H + G +E A A+++AI+ N A+ Y
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF 63
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+++ + AL+++ +A AY G Y + ++EA A +
Sbjct: 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121
Score = 72.2 bits (178), Expect = 2e-15
Identities = 14/90 (15%), Positives = 34/90 (37%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
+++A + + +A++ + L+ G ++L +P + A+++N + A
Sbjct: 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
G G +EA + D
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPG 191
Score = 71.0 bits (175), Expect = 4e-15
Identities = 15/85 (17%), Positives = 29/85 (34%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + A+ A++LN + + G + + + + +P A A+
Sbjct: 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
G Y E+A L A I
Sbjct: 199 AGVTYAYKENREKALEMLDKAIDIQ 223
Score = 70.2 bits (173), Expect = 7e-15
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
D E + E K+ E+ +E Y + + E A+ Y +A++L+ S+A Y
Sbjct: 38 DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
G Y+ AL+ ++ + G L + + A L+ A +++
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155
Score = 60.6 bits (148), Expect = 2e-11
Identities = 12/73 (16%), Positives = 26/73 (35%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
N+G ++A++ ++ + +P A + G +Y + A+ I PD A
Sbjct: 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
Query: 184 YKFRGRAYRLLGK 196
+
Sbjct: 230 LHAKKLLGHHHHH 242
Score = 59.1 bits (144), Expect = 7e-11
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 130 EDAVNAYSEAIKLNPSSALLYAKRGQSYL----QLSKPNACIRDCSVALKINPDSAAAYK 185
+ + + + L P + + + G + + + A++ N + A Y
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 186 FRGRAYRLLGKWEEAAVDLRNACKID 211
+ + E A A ++D
Sbjct: 62 NFANLLSSVNELERALAFYDKALELD 87
Score = 29.0 bits (66), Expect = 1.0
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 173 ALKINPDSAAAYKFRGRAY----RLLGKWEEAAVDLRNACKIDFD 213
+ + P + G G +E+AA A + + +
Sbjct: 11 SSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE 55
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 72.1 bits (177), Expect = 3e-16
Identities = 14/103 (13%), Positives = 28/103 (27%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
A YN G+ E+A + + + Y + +VA + +
Sbjct: 43 AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102
Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKE 222
G+ L +A + DE+ +
Sbjct: 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145
Score = 44.0 bits (104), Expect = 5e-06
Identities = 9/103 (8%), Positives = 25/103 (24%), Gaps = 6/103 (5%)
Query: 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIR 168
+I ++ I A N G + + + +
Sbjct: 4 NITENESISTAVIDAINSGA------TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEV 57
Query: 169 DCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ + Y++ ++++AA A +
Sbjct: 58 FFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
Score = 33.2 bits (76), Expect = 0.029
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214
I D + G+ EEA V R C DF
Sbjct: 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 70.9 bits (175), Expect = 3e-16
Identities = 14/90 (15%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS--A 181
Y+ G + ++++ + +AI+L+P + + +G++ L + + + + + D
Sbjct: 17 YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76
Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ + A R + E A K++
Sbjct: 77 DVWAAKADALRYIEGKEVEAEIAEARAKLE 106
Score = 49.8 bits (120), Expect = 2e-08
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 142 LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA 201
+ + Y G I A++++P+ + + +G+A L ++EEA
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 202 VDLRNACKIDFD-EQADEW 219
+ D D W
Sbjct: 61 DCYNYVINVIEDEYNKDVW 79
Score = 43.6 bits (104), Expect = 3e-06
Identities = 7/55 (12%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 127 GKFEDAVNAYSEAIKLNP--SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
++E+AV+ Y+ I + + ++A + + + K+
Sbjct: 54 ERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 73.8 bits (182), Expect = 5e-16
Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSV---ALKI 176
A + + + +A+ +++ +S +Y +R Y +L+K + +D +
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69
Query: 177 NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+A +++ G+ G+ A + A D
Sbjct: 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD 104
Score = 72.7 bits (179), Expect = 2e-15
Identities = 11/88 (12%), Positives = 29/88 (32%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
G+ A+ Y A+ + + +Y + G + I+ ++
Sbjct: 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ G+AY ++ +A ++
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELK 172
Score = 69.6 bits (171), Expect = 2e-14
Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 11/121 (9%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAV---NAYSEAIKLNPSSALLY 150
+ + E +K KK + + YN K++ A Y + + + +
Sbjct: 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77
Query: 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
G+ ++ + + I+ A+ + Y G + G + A + +
Sbjct: 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137
Query: 211 D 211
Sbjct: 138 T 138
Score = 69.2 bits (170), Expect = 2e-14
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 11/121 (9%)
Query: 108 EDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ 159
+ + ++ + Y G F A+ + I+ + ++ + GQ+Y
Sbjct: 95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154
Query: 160 LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG---KWEEAAVDLRNACKIDFDEQA 216
+ L++ P+ Y +R RA K A ++ A
Sbjct: 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214
Query: 217 D 217
Sbjct: 215 K 215
Score = 48.4 bits (116), Expect = 5e-07
Identities = 9/80 (11%), Positives = 15/80 (18%), Gaps = 8/80 (10%)
Query: 125 NDGKFEDAVNAYSEAIKLNPSSALL--------YAKRGQSYLQLSKPNACIRDCSVALKI 176
D K A Y + I++ Y L +
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
Query: 177 NPDSAAAYKFRGRAYRLLGK 196
+P + A
Sbjct: 251 DPTNKKAIDGLKMKLEHHHH 270
Score = 45.3 bits (108), Expect = 4e-06
Identities = 9/55 (16%), Positives = 17/55 (30%)
Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDL 204
+ + + I + +S Y R Y L K++ A D+
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 74.1 bits (182), Expect = 1e-15
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
Query: 122 HAYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
H++ G+ + A++AY+ A +L + L Y G ++QL + +
Sbjct: 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474
Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQAD 217
G + A +NA + Q++
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511
Score = 70.6 bits (173), Expect = 2e-14
Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 3/124 (2%)
Query: 88 SEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA 147
S DE D + I E+ D K A + +F D + ++ ++++P +
Sbjct: 283 SHEDELRRAEDYLSSINGLEKSSDLLLCK---ADTLFVRSRFIDVLAITTKILEIDPYNL 339
Query: 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
+Y S + + N + + +P+ A + G Y + K EA +
Sbjct: 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399
Query: 208 CKID 211
+D
Sbjct: 400 STMD 403
Score = 70.3 bits (172), Expect = 3e-14
Identities = 14/88 (15%), Positives = 33/88 (37%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
K +A +S++ ++P + S+ + + I + A ++ +
Sbjct: 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
Y F G + LG A L+++ +
Sbjct: 444 YLFLGMQHMQLGNILLANEYLQSSYALF 471
Score = 69.1 bits (169), Expect = 8e-14
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 123 AYNDGKFEDAVNAYSEAIKL-------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
A+N + A+N + A+ L A +A G +Y +L +A I + L
Sbjct: 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544
Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
++ + A + Y A L + I
Sbjct: 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580
Score = 67.2 bits (164), Expect = 3e-13
Identities = 14/88 (15%), Positives = 37/88 (42%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
+ G+ ++ + +P A+ + G YL ++K + R S + ++P A
Sbjct: 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ ++ + G+ ++A A ++
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLF 437
Score = 62.9 bits (153), Expect = 9e-12
Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 7/95 (7%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI-------NPD 179
G A + L LL + G S I AL +
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214
AA + G AYR L ++ A L + ++
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549
Score = 62.5 bits (152), Expect = 1e-11
Identities = 16/122 (13%), Positives = 36/122 (29%)
Query: 90 PDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALL 149
DEE + S+ED ++ + Y +I S+ L
Sbjct: 248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDL 307
Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
+ + S+ + + L+I+P + Y + G+ + + +
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367
Query: 210 ID 211
Sbjct: 368 RH 369
Score = 60.2 bits (146), Expect = 7e-11
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 122 HAYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
HAY ++ A++A ++ + L+ + A ++ YL P I +L I+P+
Sbjct: 524 HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583
Query: 181 AAAYKFRGRAYR 192
A RA
Sbjct: 584 IMASDLLKRALE 595
Score = 48.3 bits (115), Expect = 8e-07
Identities = 22/156 (14%), Positives = 38/156 (24%), Gaps = 4/156 (2%)
Query: 47 PPSKAQSDAPKPEKPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVS 106
P + DA T P A + S ++ +
Sbjct: 16 PGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNA 75
Query: 107 EEDIDKSNEKK-REAIH-AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPN 164
+ S E R H A +++ A + + + + + Q Y
Sbjct: 76 QNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFW-LAQVYCCTGDYA 134
Query: 165 ACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA 200
+ N SA Y L W+ A
Sbjct: 135 RAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGA 169
Score = 44.1 bits (104), Expect = 2e-05
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 8/121 (6%)
Query: 115 EKKREAIHAYND-----GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
+ A++ + ++A + + +++ Y RGQ Y LS +
Sbjct: 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYL-RGQVYTNLSNFDRAKEC 222
Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLN 229
AL ++ A+ + L E V N ++ +L+ + KLN
Sbjct: 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY--SKEDAAFLRSLYMLKLN 280
Query: 230 L 230
Sbjct: 281 K 281
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 72.7 bits (179), Expect = 2e-15
Identities = 20/85 (23%), Positives = 34/85 (40%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G A N +S+A+ + P ++ G Q +A L+++P A+
Sbjct: 57 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 116
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
RG A G+ + A DL + D
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDD 141
Score = 69.6 bits (171), Expect = 2e-14
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIK----LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
A+ + E + + + + A L +RG Y L D S AL
Sbjct: 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71
Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
I PD + + G G ++ A + ++D
Sbjct: 72 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107
Score = 67.7 bits (166), Expect = 8e-14
Identities = 11/77 (14%), Positives = 26/77 (33%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
E ++ L + G+ YL L ++ +A+ N +
Sbjct: 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251
Query: 184 YKFRGRAYRLLGKWEEA 200
+++ LLG+ ++
Sbjct: 252 HRYALLELSLLGQDQDD 268
Score = 62.7 bits (153), Expect = 5e-12
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
G F+ A A+ ++L+P+ + RG + + D + +P+
Sbjct: 88 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR 147
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQAD 217
+ A + L + ++A L+ + EQ
Sbjct: 148 SLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWG 180
Score = 56.2 bits (136), Expect = 1e-09
Identities = 10/100 (10%), Positives = 26/100 (26%), Gaps = 4/100 (4%)
Query: 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRG---QSYLQLSKPNACIRDCSVALKINPD 179
A + A + + + + + + + D + +
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213
Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
+ + G+ Y LG + A + A + E
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-FVEH 252
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 73.7 bits (181), Expect = 2e-15
Identities = 15/85 (17%), Positives = 25/85 (29%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G A + L+P A+ G+ + A P+ +
Sbjct: 37 GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW 96
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
G A G+ E AA A ++
Sbjct: 97 LGHALEDAGQAEAAAAAYTRAHQLL 121
Score = 64.5 bits (157), Expect = 3e-12
Identities = 15/85 (17%), Positives = 26/85 (30%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ A++ P + + + L + A L ++P A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
GR + EAAV L+ A
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAA 87
Score = 52.2 bits (125), Expect = 4e-08
Identities = 10/82 (12%), Positives = 21/82 (25%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
+ + +A +A P + G + + A + A ++ P+
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123
Query: 180 SAAAYKFRGRAYRLLGKWEEAA 201
R L W
Sbjct: 124 EPYITAQLLNWRRRLCDWRALD 145
Score = 39.1 bits (91), Expect = 8e-04
Identities = 5/47 (10%), Positives = 14/47 (29%)
Query: 167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
+ A++ P A+ A +G + ++ +
Sbjct: 9 LLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG 55
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 71.0 bits (174), Expect = 2e-15
Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 16/122 (13%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAI----------------KLNPSSALL 149
EE + + + K E + + +A+ Y EA+ K
Sbjct: 31 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90
Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
Y + I S LKI+ ++ A G A G EEA +L A
Sbjct: 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150
Query: 210 ID 211
++
Sbjct: 151 LN 152
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 72.7 bits (179), Expect = 3e-15
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 1/110 (0%)
Query: 122 HAYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
H++ + + A+ AY A +L L G Y + R S AL I P+
Sbjct: 133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192
Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNL 230
G G+W+ A +A + + + + P NL
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242
Score = 71.6 bits (176), Expect = 5e-15
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 122 HAYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
H K+ +A++ + +A+ L P +A Y+ G + + + AL + D
Sbjct: 244 HVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303
Query: 181 AAAYKFRGRAYRLLGKWEEAAV 202
+ G + EA +
Sbjct: 304 TFSVTMLGHCIEMYIGDSEAYI 325
Score = 66.5 bits (163), Expect = 3e-13
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSS---------ALLYAKRGQSYLQLSKPNACIRDCSVAL 174
+ +G+++ A + +A++ + L G +L K + AL
Sbjct: 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263
Query: 175 KINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ P +A+ Y G + L+G +E A A +
Sbjct: 264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300
Score = 64.2 bits (157), Expect = 2e-12
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
A Y + F+ S ++ +P A + ++L+K N + + P
Sbjct: 29 AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88
Query: 180 SAAAYKFRGRAYRLLGKWEEAAVD-LRNACKID 211
+ ++ G Y ++G E A L A ++
Sbjct: 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE 121
Score = 64.2 bits (157), Expect = 2e-12
Identities = 16/84 (19%), Positives = 27/84 (32%)
Query: 128 KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187
K E A S+A L + + G S+ S+ + + A ++ +
Sbjct: 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165
Query: 188 GRAYRLLGKWEEAAVDLRNACKID 211
G Y L + A A I
Sbjct: 166 GLEYGLTNNSKLAERFFSQALSIA 189
Score = 61.2 bits (149), Expect = 2e-11
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 9/97 (9%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN--------- 177
+ A +S+A+ + P + + G Q + + AL+
Sbjct: 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
Query: 178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214
G R L K+ EA R A +
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269
Score = 50.4 bits (121), Expect = 1e-07
Identities = 9/82 (10%), Positives = 23/82 (28%)
Query: 130 EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189
+ + E++ + + + + C + SV ++ +P A+
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64
Query: 190 AYRLLGKWEEAAVDLRNACKID 211
L K E +
Sbjct: 65 TLVELNKANELFYLSHKLVDLY 86
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 73.2 bits (180), Expect = 3e-15
Identities = 13/123 (10%), Positives = 28/123 (22%), Gaps = 8/123 (6%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
++ + +++ E + A + + +A L P + A
Sbjct: 359 TVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 418
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
L + A + P A G L A +
Sbjct: 419 DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTN 478
Query: 214 EQA 216
+
Sbjct: 479 DHL 481
Score = 73.2 bits (180), Expect = 3e-15
Identities = 12/87 (13%), Positives = 22/87 (25%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L P + A G L + A + P A
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 349
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFD 213
+ L + L A + +
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPE 376
Score = 72.1 bits (177), Expect = 6e-15
Identities = 12/85 (14%), Positives = 22/85 (25%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L P + A G L + A + P+ A
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 417
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
+ L + L A +
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLT 442
Score = 72.1 bits (177), Expect = 7e-15
Identities = 13/118 (11%), Positives = 31/118 (26%), Gaps = 8/118 (6%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
++ + +++ + + A + + +A L P + A
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
L + A + P+ A G + L + L A +
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 408
Score = 71.7 bits (176), Expect = 9e-15
Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 8/118 (6%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
++ + +++ E + A + + +A L P + A
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASN 180
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
G L + A + P A G + L + L A +
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238
Score = 70.9 bits (174), Expect = 2e-14
Identities = 12/85 (14%), Positives = 21/85 (24%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L P + A L + A + P A
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 315
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
G + L + L A +
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLT 340
Score = 70.9 bits (174), Expect = 2e-14
Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 1/93 (1%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L P + A G L + A + P A
Sbjct: 222 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 281
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
+ L + L A + Q
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQ-QVVAI 313
Score = 70.5 bits (173), Expect = 2e-14
Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 9/126 (7%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
++ + +++ + + A + + +A L P + A
Sbjct: 87 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 146
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
L A + A + P+ A G + L + L A +
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206
Query: 214 EQADEW 219
Q
Sbjct: 207 -QVVAI 211
Score = 67.5 bits (165), Expect = 3e-13
Identities = 11/85 (12%), Positives = 21/85 (24%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L P + A L + A + P+ A
Sbjct: 86 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
+ L + L A +
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLT 170
Score = 66.7 bits (163), Expect = 4e-13
Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 8/118 (6%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
++ + +++ E + A + + +A L P + A
Sbjct: 155 TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 214
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
G L + A + P A G + L + L A +
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272
Score = 62.8 bits (153), Expect = 9e-12
Identities = 16/106 (15%), Positives = 27/106 (25%), Gaps = 6/106 (5%)
Query: 119 EAIHAYNDGKFEDAVNAYSEA-----IKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
I +AV+A+ A + L P + A L + A
Sbjct: 39 LKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQA 98
Query: 174 LKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
+ P A + L + L A + + Q
Sbjct: 99 HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE-QVVAI 143
Score = 51.3 bits (123), Expect = 8e-08
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 1/93 (1%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
A ++L+ L AKRG + L + P+ A
Sbjct: 18 ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIAS 77
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
+ L + L A + Q
Sbjct: 78 HDGGKQALETVQRLLPVLCQAHGLTPQ-QVVAI 109
Score = 45.1 bits (107), Expect = 8e-06
Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 14/102 (13%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
++ + +++ E + A + + +A L P + A
Sbjct: 393 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 452
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG 195
G L A + AL + A LG
Sbjct: 453 GGGRPALESIVAQLSRPDPALAALTND------HLVALACLG 488
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 73.3 bits (179), Expect = 3e-15
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
GK ++A+ Y EAI+++P+ A Y+ G + ++ ++ + A++INP A A+
Sbjct: 57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFD 213
++ G EA R A K+ D
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPD 143
Score = 63.3 bits (153), Expect = 9e-12
Identities = 21/92 (22%), Positives = 37/92 (40%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
A G E+AV Y +A+++ P A ++ Q K + A++I+P
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
A AY G + + + A A +I+
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107
Score = 62.5 bits (151), Expect = 1e-11
Identities = 22/104 (21%), Positives = 40/104 (38%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ A+ Y+ AI++NP+ A ++ + I ALK+ PD AY
Sbjct: 91 QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNL 230
+++ W + ++ I D+ L V P+ L
Sbjct: 151 LAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSML 194
Score = 46.3 bits (109), Expect = 3e-06
Identities = 15/72 (20%), Positives = 27/72 (37%)
Query: 142 LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA 201
P+ A + +R AL++ P+ AAA+ + GK +EA
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63
Query: 202 VDLRNACKIDFD 213
+ + A +I
Sbjct: 64 MHYKEAIRISPT 75
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 72.2 bits (177), Expect = 3e-15
Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 15/165 (9%)
Query: 62 FTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAI 121
A +E N + E + + SEE +++S K
Sbjct: 96 VYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155
Query: 122 HAYNDGKFEDAVNAYSEAI---------------KLNPSSALLYAKRGQSYLQLSKPNAC 166
+ +GK++ A+ Y + + K + +L+L +A
Sbjct: 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA 215
Query: 167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
I C+ AL+++ ++ RG A+ + +E A D + ++
Sbjct: 216 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 71.6 bits (176), Expect = 6e-15
Identities = 19/88 (21%), Positives = 35/88 (39%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
++ A A++L P A L+ K G + ++P + + AL INP
Sbjct: 183 NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
+Y + +++ AA L A +
Sbjct: 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Score = 70.8 bits (174), Expect = 1e-14
Identities = 13/93 (13%), Positives = 26/93 (27%)
Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
E + +A A+ + P + G + + K I + A ++P
Sbjct: 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86
Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
A + ++ A LR
Sbjct: 87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 119
Score = 62.3 bits (152), Expect = 1e-11
Identities = 17/85 (20%), Positives = 36/85 (42%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
++ + A+++NP+ A L+A G Y + ++ + A+++ PD A +
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
G + +EA A I+
Sbjct: 212 LGATLANGNRPQEALDAYNRALDIN 236
Score = 60.8 bits (148), Expect = 3e-11
Identities = 24/137 (17%), Positives = 40/137 (29%), Gaps = 37/137 (27%)
Query: 112 KSNEKKREAIHAY----------------------NDGKFEDAVNAYSEAIKLNPSSALL 149
NEK AI A N+ A+ + + P L
Sbjct: 66 AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125
Query: 150 Y---------------AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194
+ ++ C AL++NP+ A + G Y L
Sbjct: 126 GSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185
Query: 195 GKWEEAAVDLRNACKID 211
++ AA +LR A ++
Sbjct: 186 NNYDSAAANLRRAVELR 202
Score = 56.9 bits (138), Expect = 7e-10
Identities = 14/85 (16%), Positives = 24/85 (28%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G Y + G S L+L+ + P+ A++
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
G K A + L +A +D
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLD 85
Score = 55.4 bits (134), Expect = 2e-09
Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 12/89 (13%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
N + ++A++AY+ A+ +NP + SY +S+ + + A+ +
Sbjct: 217 ANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276
Query: 184 YKFR------------GRAYRLLGKWEEA 200
++ + +
Sbjct: 277 TGEASREATRSMWDFFRMLLNVMNRPDLV 305
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 69.4 bits (171), Expect = 7e-15
Identities = 13/88 (14%), Positives = 29/88 (32%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
G++ AV + + + G +Y++ + +L PD+
Sbjct: 19 AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV 78
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
G Y + K++ A L + +
Sbjct: 79 ATVLGLTYVQVQKYDLAVPLLIKVAEAN 106
Score = 67.1 bits (165), Expect = 4e-14
Identities = 18/85 (21%), Positives = 39/85 (45%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
K++ AV + + NP + + + G + L + + I +AL + P+ ++
Sbjct: 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA 149
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
+Y +G+ EEA + A ++D
Sbjct: 150 IAFSYEQMGRHEEALPHFKKANELD 174
Score = 66.3 bits (163), Expect = 9e-14
Identities = 15/85 (17%), Positives = 32/85 (37%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G + ++ P + + G +Y+Q+ K + + + NP +
Sbjct: 56 GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFR 115
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
G A LG+++EA + A +
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLR 140
Score = 50.9 bits (123), Expect = 3e-08
Identities = 9/74 (12%), Positives = 21/74 (28%)
Query: 140 IKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEE 199
+ + + Y +G S+ + + + + + G AY G +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 200 AAVDLRNACKIDFD 213
L + D
Sbjct: 61 GTELLERSLADAPD 74
Score = 50.1 bits (121), Expect = 5e-08
Identities = 10/58 (17%), Positives = 29/58 (50%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184
G+F++A++++ A+ L P+ ++ SY Q+ + + A +++ ++
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 67.8 bits (167), Expect = 1e-14
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G +++A+ Y +A++L+P SA + G +Y + + I AL+++P SA A+
Sbjct: 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 74
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
G AY G ++EA + A ++D
Sbjct: 75 LGNAYYKQGDYDEAIEYYQKALELD 99
Score = 66.6 bits (164), Expect = 2e-14
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G +++A+ Y +A++L+P SA + G +Y + + I AL+++P SA A+
Sbjct: 49 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
G AY G ++EA + A ++D
Sbjct: 109 LGNAYYKQGDYDEAIEYYQKALELD 133
Score = 47.0 bits (113), Expect = 4e-07
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 123 AYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
AY G +++A+ Y +A++L+P SA + G +Y + + I AL+++P S
Sbjct: 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 41.6 bits (99), Expect = 2e-05
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
+ G +Y + + I AL+++P SA A+ G AY G ++EA + A +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 210 ID 211
+D
Sbjct: 64 LD 65
Score = 26.6 bits (60), Expect = 3.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
A A+ G AY G ++EA + A ++D
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 31
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 68.0 bits (166), Expect = 1e-14
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 3/120 (2%)
Query: 103 IEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162
E+S + +++ A + Y G +EDA + L+ + + G + +
Sbjct: 14 NEISSDTLEQLYSL---AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ 70
Query: 163 PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKE 222
+ I S ++ G+ EA L A ++ + L
Sbjct: 71 YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130
Score = 53.0 bits (127), Expect = 3e-09
Identities = 6/85 (7%), Positives = 22/85 (25%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G + +++ + + Q ++ + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
G + +G+++ A +D
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMD 85
Score = 52.6 bits (126), Expect = 5e-09
Identities = 9/74 (12%), Positives = 26/74 (35%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G+++ A+++YS ++ + LQ + +A ++ + +
Sbjct: 69 GQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128
Query: 187 RGRAYRLLGKWEEA 200
R +L +
Sbjct: 129 STRVSSMLEAIKLK 142
Score = 32.2 bits (73), Expect = 0.054
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214
+I+ D+ G +E+A + C +D +
Sbjct: 13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD 54
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 70.1 bits (172), Expect = 2e-14
Identities = 15/93 (16%), Positives = 34/93 (36%)
Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
E + +G +AV + A++ +P + G + + + I L++ P
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129
Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
D+ A ++ +A LR+ +
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYT 162
Score = 69.7 bits (171), Expect = 3e-14
Identities = 18/88 (20%), Positives = 37/88 (42%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
G+++ AV+ ++ A+ + P+ LL+ K G + ++ + AL++ P +
Sbjct: 228 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 287
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
G + LG EA A +
Sbjct: 288 RYNLGISCINLGAHREAVEHFLEALNMQ 315
Score = 59.3 bits (144), Expect = 1e-10
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNACIRDCSVALK 175
R +D F + + A++L+P+S + G + + + + + AL
Sbjct: 186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245
Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ P+ + G + EEA R A ++
Sbjct: 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281
Score = 58.5 bits (142), Expect = 2e-10
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 4/101 (3%)
Query: 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAK----RGQSYLQLSKPNACIRDC 170
K+ H + + Y + + + L G LQ +
Sbjct: 28 AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87
Query: 171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
A++ +P A+++ G + A LR ++
Sbjct: 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128
Score = 55.8 bits (135), Expect = 2e-09
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
N + E+AV AY A++L P G S + L + AL + S
Sbjct: 262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321
Query: 184 YKFR-----------GRAYRLLGKWEEA 200
A +LG+ +
Sbjct: 322 RGEGGAMSENIWSTLRLALSMLGQSDAY 349
Score = 52.7 bits (127), Expect = 2e-08
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 15/103 (14%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
+ + A++A ++L P + S+ S L+ P A
Sbjct: 109 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 168
Query: 184 YKFR---------GRAYRLLG------KWEEAAVDLRNACKID 211
G + R+LG + E A ++D
Sbjct: 169 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 211
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 70.1 bits (172), Expect = 2e-14
Identities = 18/88 (20%), Positives = 38/88 (43%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
+ G+F A++A++ A+ + P L+ + G + + + + AL+I P +
Sbjct: 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
G + LG + EA + A +
Sbjct: 284 RYNLGISCINLGAYREAVSNFLTALSLQ 311
Score = 69.7 bits (171), Expect = 3e-14
Identities = 17/93 (18%), Positives = 33/93 (35%)
Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
E + +G + AI +P A + G + + A I L++ P
Sbjct: 71 EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130
Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
++ A +Y ++A L+N K +
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQN 163
Score = 60.8 bits (148), Expect = 4e-11
Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 5/124 (4%)
Query: 93 EEPIPDVATDIEVSEEDIDKSNEKKR-----EAIHAYNDGKFEDAVNAYSEAIKLNPSSA 147
E V +D E ++ + E R E A N + Y +
Sbjct: 6 ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW 65
Query: 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
+ G L+ I A+ +P A A++F G + A V L+
Sbjct: 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125
Query: 208 CKID 211
++
Sbjct: 126 LELQ 129
Score = 60.8 bits (148), Expect = 4e-11
Identities = 14/84 (16%), Positives = 27/84 (32%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
+ + A+ A ++L P++ SY S +K NP
Sbjct: 110 AENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNA 207
K + + L + ++ VD
Sbjct: 170 VKNKKGSPGLTRRMSKSPVDSSVL 193
Score = 55.8 bits (135), Expect = 2e-09
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 4/102 (3%)
Query: 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNACIRD 169
+ ++ E Y EA N L G + + N I
Sbjct: 178 GLTRRMSKSPVDS--SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235
Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ AL + P+ + + G + EEA A +I
Sbjct: 236 FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277
Score = 54.7 bits (132), Expect = 4e-09
Identities = 26/134 (19%), Positives = 36/134 (26%), Gaps = 34/134 (25%)
Query: 112 KSNEKKREAIHAY----------------------NDGKFEDAVNAYSEAIKLNPSSALL 149
NE ++ AI A N +DA A IK NP L
Sbjct: 110 AENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169
Query: 150 YAKRGQSYLQLSKPNACIRDCSV----------ALKINPDS--AAAYKFRGRAYRLLGKW 197
+ S + + D SV A N D G + L G++
Sbjct: 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF 229
Query: 198 EEAAVDLRNACKID 211
A A +
Sbjct: 230 NRAIDAFNAALTVR 243
Score = 52.0 bits (125), Expect = 3e-08
Identities = 15/68 (22%), Positives = 26/68 (38%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
N + E+AV AY+ A+++ P G S + L + + AL + S
Sbjct: 258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317
Query: 184 YKFRGRAY 191
+ A
Sbjct: 318 QQVPHPAI 325
Score = 42.7 bits (101), Expect = 4e-05
Identities = 10/93 (10%), Positives = 19/93 (20%), Gaps = 8/93 (8%)
Query: 127 GKFEDAVNAYSEAIKLNPS--------SALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
+FE A A + + + Q +A + +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62
Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
G G + + A D
Sbjct: 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 66.3 bits (163), Expect = 3e-14
Identities = 23/85 (27%), Positives = 48/85 (56%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G +++A+ Y +A++L+P++A + G +Y + + I AL+++P++A A+
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
G AY G ++EA + A ++D
Sbjct: 83 LGNAYYKQGDYDEAIEYYQKALELD 107
Score = 56.6 bits (138), Expect = 9e-11
Identities = 18/69 (26%), Positives = 39/69 (56%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G +++A+ Y +A++L+P++A + G +Y + + I AL+++P++A A +
Sbjct: 57 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Query: 187 RGRAYRLLG 195
G A + G
Sbjct: 117 LGNAKQKQG 125
Score = 44.7 bits (107), Expect = 2e-06
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 142 LNPS-SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA 200
++P SA + G +Y + + I AL+++P++A A+ G AY G ++EA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 201 AVDLRNACKIDFD 213
+ A ++D +
Sbjct: 63 IEYYQKALELDPN 75
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 65.4 bits (160), Expect = 4e-14
Identities = 13/82 (15%), Positives = 29/82 (35%)
Query: 130 EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189
+ + + LL G++Y + + +A + AL +P + A+K+ G+
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 190 AYRLLGKWEEAAVDLRNACKID 211
+ G A +
Sbjct: 62 TLQGQGDRAGARQAWESGLAAA 83
Score = 44.2 bits (105), Expect = 2e-06
Identities = 9/79 (11%), Positives = 23/79 (29%), Gaps = 2/79 (2%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SA 181
+F+ A+ A+ +P+ ++ + G++ + L
Sbjct: 30 AEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89
Query: 182 AAYKFRGRAYRLLGKWEEA 200
K R L + +
Sbjct: 90 QVVKELQVFLRRLAREDAL 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 66.3 bits (162), Expect = 1e-13
Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 9/131 (6%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
+ + + + +K + G+ +DA+ Y + ++L +
Sbjct: 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128
Query: 154 GQSY-LQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212
G Y L + + L A G + ++E+A L+
Sbjct: 129 GNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188
Query: 213 DEQADEWLKEV 223
+A + L ++
Sbjct: 189 STEAQKTLDKI 199
Score = 63.6 bits (155), Expect = 1e-12
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
+ ++ A Y E ++ P++ + + + +R L++ D+ AA
Sbjct: 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124
Query: 184 YKFRGRAYRLLGKWEEAAV-DLRNACKID 211
F G Y L + E+ +
Sbjct: 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSP 153
Score = 59.4 bits (144), Expect = 4e-11
Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 16/109 (14%)
Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKR----------------GQSYLQLSK 162
+ A G+ AV+ + + I LN +Y +Y +
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69
Query: 163 PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ L+ P++ + G+ ++A +++
Sbjct: 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118
Score = 47.0 bits (112), Expect = 8e-07
Identities = 8/77 (10%), Positives = 20/77 (25%), Gaps = 2/77 (2%)
Query: 124 YNDGKFED-AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
Y + E + + + + G S L ++ + P + A
Sbjct: 133 YLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192
Query: 183 AYKFRGRAYRLLGKWEE 199
+ R+ +
Sbjct: 193 QKTL-DKILRIEKEVNR 208
Score = 35.1 bits (81), Expect = 0.009
Identities = 7/82 (8%), Positives = 24/82 (29%), Gaps = 16/82 (19%)
Query: 146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR----------------GR 189
S ++ + ++ + + + +N D Y +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 190 AYRLLGKWEEAAVDLRNACKID 211
AY+ +++A + + +
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKA 84
Score = 26.6 bits (59), Expect = 5.3
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
S + A G+ +A R ++ D
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID 36
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 62.5 bits (152), Expect = 6e-13
Identities = 13/93 (13%), Positives = 26/93 (27%)
Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
E + +A A+ + P + G + + K I + A ++P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
A + ++ A LR
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
Score = 42.4 bits (100), Expect = 1e-05
Identities = 12/60 (20%), Positives = 22/60 (36%)
Query: 152 KRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ G S L+L+ + P+ A++ G K A + L +A +D
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Score = 39.4 bits (92), Expect = 1e-04
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
+ K A+ A + A L+P ++A S+ NA + L P
Sbjct: 64 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
Score = 27.8 bits (62), Expect = 1.6
Identities = 9/53 (16%), Positives = 13/53 (24%), Gaps = 22/53 (41%)
Query: 114 NEKKREAIHAY----------------------NDGKFEDAVNAYSEAIKLNP 144
NEK AI A N+ A+ + + P
Sbjct: 64 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 64.1 bits (157), Expect = 8e-13
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
Y G+++ A+ + A+K NP ++ L+L N + + + P
Sbjct: 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75
Query: 184 YKFRGRAYRLL-----------GKWEEAAVDLRNACKID 211
Y AY L G E+A L++A +++
Sbjct: 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114
Score = 64.1 bits (157), Expect = 1e-12
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNAC-----------IRDCSVALK 175
G A+ + P Y ++Y+ L + + A +
Sbjct: 53 GLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112
Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+NP A + RG Y LLG+ ++A L+ A ++
Sbjct: 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148
Score = 62.2 bits (152), Expect = 5e-12
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G+ + A + +A+ L + + + + YL + + + + + AL+ P
Sbjct: 132 GERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVR 190
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
A L GK EEAA
Sbjct: 191 YASALLLKGKAEEAARAAALEHHHH 215
Score = 60.6 bits (148), Expect = 2e-11
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G E A++ +A ++NP A L+ +RG Y L + + AL +
Sbjct: 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSA 156
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
Y +G+ +EA A +
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQA 181
Score = 47.1 bits (113), Expect = 9e-07
Identities = 13/62 (20%), Positives = 20/62 (32%)
Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
+ G L + +A + ALK NP A + R LG A + +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67
Query: 210 ID 211
Sbjct: 68 RT 69
Score = 41.8 bits (99), Expect = 6e-05
Identities = 9/52 (17%), Positives = 22/52 (42%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
G+ ++A+ Y++A++ P L + + L K R ++ +
Sbjct: 165 GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
Score = 26.3 bits (59), Expect = 8.0
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ G LG+++ A A K +
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN 35
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 63.6 bits (155), Expect = 1e-12
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
E + A + ++ A++A+S + + + G Y L + + ++ +
Sbjct: 12 EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
A AY RG Y K++ A DL+ A
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEA 97
Score = 61.7 bits (150), Expect = 6e-12
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 16/105 (15%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK-INPDSAAAYK 185
+A A++ +I + A+ Y +RG Y Q K + I+D AL + + YK
Sbjct: 51 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110
Query: 186 F---------------RGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
Y +W++A L A + + +
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155
Score = 39.7 bits (93), Expect = 3e-04
Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 3/70 (4%)
Query: 142 LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA 201
++ A+ G + S + + G Y +L EA
Sbjct: 1 MSLVEAISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAE 57
Query: 202 VDLRNACKID 211
+ D
Sbjct: 58 KAFTRSINRD 67
Score = 35.5 bits (82), Expect = 0.007
Identities = 10/107 (9%), Positives = 30/107 (28%), Gaps = 24/107 (22%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPS-------- 145
++ +E+ +S + + AY K++ A+ EA+
Sbjct: 52 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111
Query: 146 --------SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184
+ + Y + + ++A + + +
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSK 158
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 65.1 bits (158), Expect = 2e-12
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 1/93 (1%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L P+ + A L + A + PD A
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
+ L + L A + +Q
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLT-PDQVVAI 297
Score = 64.7 bits (157), Expect = 3e-12
Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 1/93 (1%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L P + A G L + A + PD A
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
+ L + L A + +Q
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLT-PDQVVAI 365
Score = 63.5 bits (154), Expect = 6e-12
Identities = 14/90 (15%), Positives = 24/90 (26%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L P + A L + A + PD A
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQA 216
G + L + L A + D+
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVV 397
Score = 62.7 bits (152), Expect = 1e-11
Identities = 13/85 (15%), Positives = 22/85 (25%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L P + A L + A + PD A
Sbjct: 240 ETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 299
Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
G + L + L A +
Sbjct: 300 HGGGKQALETVQRLLPVLCQAHGLT 324
Score = 62.4 bits (151), Expect = 2e-11
Identities = 13/121 (10%), Positives = 30/121 (24%), Gaps = 8/121 (6%)
Query: 101 TDIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAK 152
++ + +++ + A + + +A L P + A
Sbjct: 613 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 672
Query: 153 RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212
G L + A + + A + L + L A +
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732
Query: 213 D 213
D
Sbjct: 733 D 733
Score = 58.9 bits (142), Expect = 3e-10
Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 1/93 (1%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L P + A G L + A + PD A
Sbjct: 511 ATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 570
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
G + L + L A + Q
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQV-QVVAI 602
Score = 58.1 bits (140), Expect = 5e-10
Identities = 19/131 (14%), Positives = 34/131 (25%), Gaps = 9/131 (6%)
Query: 94 EPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEA-----IKLNPSSAL 148
E + A ++ +D I +AV+A A + L P+ +
Sbjct: 137 EALLTDAGELRGPPLQLDTGQ---LVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVV 193
Query: 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208
A L + A + P A + L + L A
Sbjct: 194 AIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAH 253
Query: 209 KIDFDEQADEW 219
+ +Q
Sbjct: 254 GLP-PDQVVAI 263
Score = 57.7 bits (139), Expect = 6e-10
Identities = 12/93 (12%), Positives = 23/93 (24%), Gaps = 1/93 (1%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + + L P+ + A L + A + PD A
Sbjct: 443 ETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIAS 502
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
+ L + L A + +Q
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLT-PDQVVAI 534
Score = 57.0 bits (137), Expect = 1e-09
Identities = 17/127 (13%), Positives = 33/127 (25%), Gaps = 5/127 (3%)
Query: 93 EEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAK 152
+ +P + ++ + + + + +A L P + A
Sbjct: 311 QRLLPVLCQAHGLTPDQVVAIASH---DGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367
Query: 153 RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212
G L + A + PD A G + L + L A +
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG-GKQALETVQRLLPVLCQAHGLTP 426
Query: 213 DEQADEW 219
D Q
Sbjct: 427 D-QVVAI 432
Score = 55.8 bits (134), Expect = 3e-09
Identities = 10/81 (12%), Positives = 18/81 (22%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L + A L + A + P A
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 638
Query: 187 RGRAYRLLGKWEEAAVDLRNA 207
+ L + L A
Sbjct: 639 HDGGKQALETVQRLLPVLCQA 659
Score = 55.4 bits (133), Expect = 3e-09
Identities = 12/93 (12%), Positives = 21/93 (22%), Gaps = 1/93 (1%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L P + A G L + A + A
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIAS 604
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
+ L + L A + Q
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPA-QVVAI 636
Score = 55.0 bits (132), Expect = 5e-09
Identities = 11/92 (11%), Positives = 22/92 (23%)
Query: 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
+ + +A L P + A L + + P
Sbjct: 405 KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVV 464
Query: 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214
A + L ++ L A + D+
Sbjct: 465 AIASHDGGKQALETVQQLLPVLCQAHGLTPDQ 496
Score = 54.7 bits (131), Expect = 7e-09
Identities = 12/87 (13%), Positives = 21/87 (24%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L + A L + A + PD A
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFD 213
G + L + L A +
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPA 767
Score = 53.5 bits (128), Expect = 2e-08
Identities = 14/87 (16%), Positives = 24/87 (27%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L P + A L+ + A + PD A
Sbjct: 477 ETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIAS 536
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFD 213
G + L + L A + D
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPD 563
Score = 48.5 bits (115), Expect = 8e-07
Identities = 13/124 (10%), Positives = 31/124 (25%), Gaps = 8/124 (6%)
Query: 101 TDIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAK 152
++ + +++ +E + A + + +A L P + A
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740
Query: 153 RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212
G L + A + P A + L + L +
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800
Query: 213 DEQA 216
+
Sbjct: 801 AQVV 804
Score = 40.0 bits (93), Expect = 4e-04
Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 7/123 (5%)
Query: 96 IPDVATDIEVSEEDID--KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKR 153
+P + D ++ + SN ++A+ + + +A L + A
Sbjct: 789 LPVLCQDHGLTLAQVVAIASNIGGKQALETV-----QRLLPVLCQAHGLTQDQVVAIASN 843
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
L + + PD A + L + L + D
Sbjct: 844 IGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLD 903
Query: 214 EQA 216
+
Sbjct: 904 QVV 906
Score = 38.9 bits (90), Expect = 0.001
Identities = 9/81 (11%), Positives = 18/81 (22%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + +A L P+ + A L + + A
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIAS 808
Query: 187 RGRAYRLLGKWEEAAVDLRNA 207
+ L + L A
Sbjct: 809 NIGGKQALETVQRLLPVLCQA 829
Score = 37.7 bits (87), Expect = 0.003
Identities = 8/81 (9%), Positives = 17/81 (20%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ + + L + + A L + A + D A
Sbjct: 783 ETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIAS 842
Query: 187 RGRAYRLLGKWEEAAVDLRNA 207
+ L + L
Sbjct: 843 NIGGKQALETVQRLLPVLCQD 863
Score = 36.9 bits (85), Expect = 0.004
Identities = 13/126 (10%), Positives = 35/126 (27%), Gaps = 8/126 (6%)
Query: 93 EEPIPDVATDIEVSEEDID--KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLY 150
+ +P + D ++ + + SN ++A+ + + + L +
Sbjct: 854 QRLLPVLCQDHGLTPDQVVAIASNIGGKQALETV-----QRLLPVLCQDHGLTLDQVVAI 908
Query: 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
A G + + + PD A + L + L +
Sbjct: 909 ASNGGKQALETVQRL-LPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGL 967
Query: 211 DFDEQA 216
++
Sbjct: 968 TPNQVV 973
Score = 36.5 bits (84), Expect = 0.007
Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 11/97 (11%)
Query: 122 HAYNDGK-----FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
A N GK + + + L P + A L + +
Sbjct: 908 IASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGL 967
Query: 177 NPDSAAAYKFRGRAYRL------LGKWEEAAVDLRNA 207
P+ A G L L + + A L N
Sbjct: 968 TPNQVVAIASNGGKQALESIVAQLSRPDPALAALTND 1004
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 61.5 bits (150), Expect = 1e-11
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 8/117 (6%)
Query: 99 VATDIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLY 150
V + +++ K+++ + EA AY G E A +A++++PSSA +
Sbjct: 15 VPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAH 74
Query: 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
A + +P + AL + +A G ++EEA L A
Sbjct: 75 AALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA 131
Score = 58.4 bits (142), Expect = 1e-10
Identities = 8/75 (10%), Positives = 26/75 (34%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
K A + ++++LN + + + + + + + + +A +
Sbjct: 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLL 214
Query: 187 RGRAYRLLGKWEEAA 201
R ++ + AA
Sbjct: 215 GIRLAKVFEDRDTAA 229
Score = 58.0 bits (141), Expect = 2e-10
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Query: 124 YNDGKFEDAVNAYSEAIK--LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
Y ++E+A EA + L P + ++ G LQ+ KP +L++N +
Sbjct: 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP 175
Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
+ ++ A +
Sbjct: 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Score = 55.7 bits (135), Expect = 1e-09
Identities = 17/81 (20%), Positives = 28/81 (34%)
Query: 131 DAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190
+ K + Y + G YLQ AL+I+P SA A+
Sbjct: 21 MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVV 80
Query: 191 YRLLGKWEEAAVDLRNACKID 211
++ + + A + R A D
Sbjct: 81 FQTEMEPKLADEEYRKALASD 101
Score = 53.4 bits (129), Expect = 9e-09
Identities = 10/87 (11%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK--INPDSAAAY 184
+ + A Y +A+ + +A + G + + + A + + P+ + +
Sbjct: 85 MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVF 144
Query: 185 KFRGRAYRLLGKWEEAAVDLRNACKID 211
+ G + K +A + +++
Sbjct: 145 ENLGLVSLQMKKPAQAKEYFEKSLRLN 171
Score = 40.3 bits (95), Expect = 2e-04
Identities = 7/64 (10%), Positives = 18/64 (28%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
Y + ++ A Y + +A + + ++ P S
Sbjct: 186 YKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245
Query: 184 YKFR 187
+F+
Sbjct: 246 QEFQ 249
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 56.3 bits (137), Expect = 6e-11
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 123 AYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
AY G +++A+ Y +A++L+P++A + G +Y + + I AL+++P++A
Sbjct: 18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77
Query: 182 AAYKFRGRAYRLLG 195
A + G A + G
Sbjct: 78 EAKQNLGNAKQKQG 91
Score = 44.7 bits (107), Expect = 1e-06
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 142 LNPS-SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA 200
++P SA + G +Y + + I AL+++P++A A+ G AY G ++EA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 201 AVDLRNACKID 211
+ A ++D
Sbjct: 63 IEYYQKALELD 73
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 60.0 bits (145), Expect = 7e-11
Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAI-----------------KLNPSSALL 149
EE I ++ +K + + + K E+A+ Y AI
Sbjct: 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPC 232
Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
+ ++L + + I C++ L + A RG+A LG+ + A D R A K
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292
Query: 210 ID-FDEQADEWLKEV 223
D+ L+ +
Sbjct: 293 YAPDDKAIRRELRAL 307
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 59.3 bits (144), Expect = 1e-10
Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 16/155 (10%)
Query: 73 ESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDA 132
E +E D S + D D++ ++ + S + K + +E A
Sbjct: 183 ELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMA 242
Query: 133 VNAYSEAI----------------KLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
+ Y++ + KL P + G L++S + C AL+I
Sbjct: 243 IKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302
Query: 177 NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+P + A R + ++ L ++++A DL+ A +I
Sbjct: 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337
Score = 37.8 bits (88), Expect = 0.002
Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 103 IEVSEEDIDKSNEKKREAIH----------AYNDGKFEDAVNAYSEAIKLNPSSALLYAK 152
+E S + ++ K + + ++ AV++ EA++++PS+ +
Sbjct: 253 VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYR 312
Query: 153 RGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185
R Q + L + + + D A +I P+ A
Sbjct: 313 RAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 58.5 bits (141), Expect = 2e-10
Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAI---------------KLNPSSALLY 150
++E ++++ K + + GK+ AV Y + + +
Sbjct: 261 TKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320
Query: 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
YL+L + + C AL ++ + RG A L+ ++E A D ++
Sbjct: 321 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380
Query: 211 D 211
+
Sbjct: 381 N 381
Score = 37.7 bits (87), Expect = 0.002
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
++ AV +A+ L+ ++ +RG++ L +++ + D L++NP + AA
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 56.9 bits (138), Expect = 4e-10
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 125 NDGKFEDAVNAYSEAIK--LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
+ +++ + +A+ P+ + +G + + +L P
Sbjct: 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148
Query: 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQAD 217
A+K R L G+ +A + QAD
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183
Score = 55.7 bits (135), Expect = 1e-09
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 9/102 (8%)
Query: 115 EKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNAC 166
EK + + + A + +A+K +P + L + R + Y L +
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 167 IRDCSVALKINPDSAAAYKFRGRA-YRLLGKWEEAAVDLRNA 207
AL I PDSA G L + E+ A
Sbjct: 62 QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA 103
Score = 45.7 bits (109), Expect = 3e-06
Identities = 13/69 (18%), Positives = 24/69 (34%)
Query: 143 NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAV 202
+ + + Y++ ALK +P + A+ R Y+ L ++A
Sbjct: 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63
Query: 203 DLRNACKID 211
R A I
Sbjct: 64 SFRQALSIK 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 57.3 bits (138), Expect = 7e-10
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 125 NDGKFEDAVNAYSEAIKLN---PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
N + A++AY++A K++ S+ L+ R + + S A ++P
Sbjct: 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292
Query: 182 AAYKFRGRAYRLLGKWEEA 200
+ + L +
Sbjct: 293 EPQQREQQLLEFLSRLTSL 311
Score = 52.7 bits (126), Expect = 3e-08
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 11/98 (11%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ--------LSKPNACIRDCSVALKIN- 177
D+V A++++ + G +YL + + A K++
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 178 --PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
+ + R ++ + EA A +D
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290
Score = 49.2 bits (117), Expect = 3e-07
Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 10/128 (7%)
Query: 98 DVATDIEVSEEDIDKSNEKKREAIHAYN--------DGKF-EDAVNAYSEAIKLNPSSAL 148
DV ++E + + +++ + A + +A S+A+KL P
Sbjct: 79 DVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE 138
Query: 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208
+ + G+ Y + + S AL + + + R L
Sbjct: 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMD 197
Query: 209 KIDFDEQA 216
+ + A
Sbjct: 198 SVRQAKLA 205
Score = 48.5 bits (115), Expect = 6e-07
Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 17/107 (15%)
Query: 122 HAYND-GKFEDAVNAYSEAIKLNPSSALLYAK--------RGQSYLQLSKPNACIRDCSV 172
Y G A +S A+ + L +R +
Sbjct: 145 EVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204
Query: 173 ALKINPDSAAAYKFRGRAY--------RLLGKWEEAAVDLRNACKID 211
A++++ ++ G AY + ++A A K+D
Sbjct: 205 AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251
Score = 35.0 bits (80), Expect = 0.017
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162
+ + +A+ +S+A L+P+ + Q LS+
Sbjct: 269 KYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 53.6 bits (129), Expect = 1e-09
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 127 GKFEDAVNAYSEAIKLN---PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
G AV Y +AI A Y G ++ L + + +K P+ A
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNA 207
F LG++E+ L
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKI 87
Score = 34.7 bits (80), Expect = 0.007
Identities = 7/64 (10%), Positives = 17/64 (26%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
G++ A + +K P+ L L + + + D
Sbjct: 38 RTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI 97
Query: 184 YKFR 187
++
Sbjct: 98 QSYK 101
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 55.7 bits (134), Expect = 2e-09
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK----PNACIRDCSVALKINPDS 180
N ++A++ +AI+LNP + L ++ + + AL+ P
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246
Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ + YR + ++A L+ A +
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277
Score = 53.4 bits (128), Expect = 1e-08
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184
+ + EA++ P + + Y + +P+ I AL+ P++A +
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284
Query: 185 KFRGRAYR-----LLGKWEEAAVDLRNA 207
G YR ++ E R
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKL 312
Score = 53.4 bits (128), Expect = 1e-08
Identities = 17/134 (12%), Positives = 40/134 (29%), Gaps = 27/134 (20%)
Query: 107 EEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYL 158
E+ ++++ EK + + A+ +A++ P++A L+ + G Y
Sbjct: 233 EKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292
Query: 159 Q-------------------LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEE 199
L + A + N + + L ++EE
Sbjct: 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352
Query: 200 AAVDLRNACKIDFD 213
A + +
Sbjct: 353 AEYYFQKEFSKELT 366
Score = 51.1 bits (122), Expect = 8e-08
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 7/99 (7%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL---SKPNACIRDCSVALKI 176
+ E A + +A++ P + + + +L I A+++
Sbjct: 145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204
Query: 177 NPDSAAAYKFRGRAY----RLLGKWEEAAVDLRNACKID 211
NPD+ + E + A +
Sbjct: 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243
Score = 46.1 bits (109), Expect = 4e-06
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
Y + A++ + E +K+N S K +++K + L N + A
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSRE-KEKMKDKLQKIAK---------MRLSKNGADSEA 432
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
L K ++A D +
Sbjct: 433 LHVLAFLQELNEKMQQADEDSERGLESG 460
Score = 34.1 bits (78), Expect = 0.031
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 19/113 (16%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKL---------NPSSALLYAKRGQSYLQLSKPNACIRDC 170
A + G+ E A+ +A +L S + + Y + + +
Sbjct: 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 171 SVALKINPDSAAAYKF--------RGRAYRLLGK--WEEAAVDLRNACKIDFD 213
+ ++ Y+ G G E A V A +
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK 170
Score = 31.8 bits (72), Expect = 0.19
Identities = 12/59 (20%), Positives = 17/59 (28%)
Query: 172 VALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNL 230
+ A L G+ E A LR A ++ E AD+ N
Sbjct: 42 TEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY 100
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 55.1 bits (132), Expect = 2e-09
Identities = 14/86 (16%), Positives = 24/86 (27%)
Query: 122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
A K +DA + E + LL + ++ + A AL +
Sbjct: 175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234
Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNA 207
+ LGK E +
Sbjct: 235 ETLINLVVLSQHLGKPPEVTNRYLSQ 260
Score = 46.7 bits (110), Expect = 2e-06
Identities = 11/87 (12%), Positives = 21/87 (24%), Gaps = 2/87 (2%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL--SKPNACIRDCSVALKINPDSAAAY 184
+ + A + + + L L K +
Sbjct: 144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLL 203
Query: 185 KFRGRAYRLLGKWEEAAVDLRNACKID 211
+ + G+WE A L+ A D
Sbjct: 204 NGQAACHMAQGRWEAAEGVLQEALDKD 230
Score = 35.1 bits (80), Expect = 0.012
Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 7/94 (7%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
A + D + A+ + L A Q L+L + + ++ + D
Sbjct: 108 ASIYFYDQNPDAALRTLHQGDSLEC-----MAMTVQILLKLDRLDLARKELKKMQDQDED 162
Query: 180 SAAAYKFRGRAYRLLG--KWEEAAVDLRNACKID 211
+ G K ++A +
Sbjct: 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC 196
Score = 32.4 bits (73), Expect = 0.084
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPN-ACIRDCSVALKINPDSA 181
G++E A EA+ + L KP R S +
Sbjct: 214 GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269
Score = 32.0 bits (72), Expect = 0.14
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 7/96 (7%)
Query: 120 AIHAYNDGKFEDAVNAYSE--AIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177
A + + + + V + ++ ++ Y P+A +R
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH-----Q 126
Query: 178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
DS + L + + A +L+ D D
Sbjct: 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 51.5 bits (124), Expect = 4e-09
Identities = 15/89 (16%), Positives = 33/89 (37%)
Query: 143 NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAV 202
+P Q +L+ + + ++ +PD Y G+ Y L + ++A
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 203 DLRNACKIDFDEQADEWLKEVTPNKLNLK 231
++ +E + L E+ KL +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAE 91
Score = 47.3 bits (113), Expect = 1e-07
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
A+ + E ++ +P Y G+ Y +L + + I + +++ +
Sbjct: 18 LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77
Query: 184 YKFR--GRAYRLLGKWEEA 200
A E
Sbjct: 78 KDLSELQDAKLKAEGLEHH 96
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 51.2 bits (123), Expect = 6e-09
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNP-SSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177
N G E+A+ A E ++ P Y G +Y +L + + A+++N
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65
Query: 178 PDSAAAYKFRGRAYRLLGK 196
PDS A A +++
Sbjct: 66 PDSPALQ-----ARKMVMD 79
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 53.5 bits (128), Expect = 1e-08
Identities = 13/96 (13%), Positives = 31/96 (32%)
Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177
R + + +N + I+ P + ++ R L P+ + + L +
Sbjct: 137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD 196
Query: 178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
+ A++ R + W+ + K D
Sbjct: 197 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232
Score = 37.4 bits (86), Expect = 0.003
Identities = 6/76 (7%), Positives = 23/76 (30%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ ++ + + + + R + + ++ LK + + + +
Sbjct: 180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ 239
Query: 187 RGRAYRLLGKWEEAAV 202
R + + AV
Sbjct: 240 RYFVISNTTGYNDRAV 255
Score = 33.5 bits (76), Expect = 0.046
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184
+ E V E IKL P + + + L + P ++ Y
Sbjct: 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKY-PNLLNQLLDLQPSHSSPY 310
Query: 185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKE 222
L E ++ + K D +A E +
Sbjct: 311 -----LIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 51.3 bits (122), Expect = 7e-08
Identities = 11/104 (10%), Positives = 32/104 (30%), Gaps = 10/104 (9%)
Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC------- 170
+ + +D A E ++ +P A++ + +
Sbjct: 204 HDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263
Query: 171 ---SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
V L + + Y+ + + + GK +E+ + ++
Sbjct: 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307
Score = 50.9 bits (121), Expect = 8e-08
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 3/106 (2%)
Query: 118 REAIHAYNDGKFEDAVNAYSEAIKL--NPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
R + H ++ + + L + +++Y + S L K + + + +
Sbjct: 246 RHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID 305
Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221
+ S Y G+ Y + G EAA A + W++
Sbjct: 306 LEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIE 350
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 49.5 bits (118), Expect = 9e-08
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPN------ACIRDCSVALKINPDS 180
+ +++ AY +A++L +A LYA + + A I AL ++ +
Sbjct: 58 NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK---ALALDSNE 114
Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221
A + + +A + +D + +
Sbjct: 115 ITALMLLASDAFMQANYAQAIELWQKV--MDLNSPRINRTQ 153
Score = 42.2 bits (99), Expect = 3e-05
Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 115 EKKREAIHAY-NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
+++R+ +H + + E + A + I+ NP ++ +A G+ YL + + + A
Sbjct: 11 QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70
Query: 174 LKINPDSAAAYKFRGRAYRLLGK---WEEAAVDLRNACKID 211
L++ ++A Y + + A +D
Sbjct: 71 LQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD 111
Score = 32.1 bits (73), Expect = 0.092
Identities = 4/68 (5%), Positives = 14/68 (20%), Gaps = 1/68 (1%)
Query: 119 EAIHAYNDGKF-EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177
++ +A+ L+ + + I + +N
Sbjct: 86 TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145
Query: 178 PDSAAAYK 185
+
Sbjct: 146 SPRINRTQ 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 49.1 bits (116), Expect = 1e-07
Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 24/136 (17%)
Query: 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS------------SALLYAKRG 154
+++ + +A G++++A A++++ + A +A
Sbjct: 5 LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 64
Query: 155 QSYLQLSKPNACIRDCSVALK-------INPDSAAAYKF----RGRAYRLLGKWEEAAVD 203
++ L + + AL +N D + R A LG+ EA +
Sbjct: 65 EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124
Query: 204 LRNACKIDFDEQADEW 219
+ ++ +E+ E
Sbjct: 125 FKKVVEMI-EERKGET 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 2e-07
Identities = 42/226 (18%), Positives = 66/226 (29%), Gaps = 67/226 (29%)
Query: 37 FVESYGG---TIPPPSKAQSDAPKPEKPF--TTPEPSAPEEESEE--SDPELDNT--GVI 87
S+G + P+ + A + ++ F PEP+ +E + EL G +
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 88 S---EPDEEEPIPDVA----TDIE---VSEEDI-----------DKSNEKKREAIHAYND 126
S EP + V T+ E + DI D + K +E I Y
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-- 126
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKR-----------GQ----SYL-------QLSKP- 163
A +SAL A GQ Y Q
Sbjct: 127 --IT-ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 164 -NACIRDCSVALK-INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
I+ + L + + A K + +L +W L N
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL-EW------LENP 222
Score = 38.5 bits (89), Expect = 0.001
Identities = 19/91 (20%), Positives = 26/91 (28%), Gaps = 35/91 (38%)
Query: 15 FLGAVKKNP----AIF--------YLPELK--------FFKDFVESYGGTIPPPSKAQSD 54
AV + AIF Y EL+ D ++ T+ + D
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 55 APKP-----------EKPFTTPEP----SAP 70
A K E P TP+ S P
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Score = 35.0 bits (80), Expect = 0.019
Identities = 48/235 (20%), Positives = 72/235 (30%), Gaps = 78/235 (33%)
Query: 1 M---SGLTPDAINKLQLFLGAVKK-NPAIFYLPELKF--------FKDFVESYGGTIPPP 48
M S LT + + V K N +LP K K+ V S G PP
Sbjct: 338 MLSISNLTQEQVQDY------VNKTNS---HLPAGKQVEISLVNGAKNLVVS--G--PPQ 384
Query: 49 S-----------KA-----QSDAP----KPE---------KPFTTP--EPSAPEEESEES 77
S KA QS P K + PF + P++ +
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 78 DPELDNTGVISEPDEEEPIPDVAT--DIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNA 135
+ + D + P+ D D+ V I +E+ + I V
Sbjct: 445 KNNVS----FNAKDIQIPVYDTFDGSDLRVLSGSI---SERIVDCI-------IRLPVK- 489
Query: 136 YSEAIKLNPSSALLYAKRGQSYL-QLSKPNA---CIRDCSV-ALKINPDSAAAYK 185
+ + + L + G S L L+ N +R L INPD +K
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 43.1 bits (102), Expect = 4e-05
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 119 EAIHAYNDGKFEDAVNAYSEAIKL------NPSSALLYAKRGQSYLQLSKPNACIRDCSV 172
E + + G N++ + S L A G+ A +
Sbjct: 14 ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73
Query: 173 ALKIN----PDSAAAYKFRGRAYRLLGKWEEA 200
A++ +A Y G AY LG + +A
Sbjct: 74 AIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKA 105
Score = 38.1 bits (89), Expect = 0.002
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 122 HAYND-GKFEDAVNAYSEAIKLN----PSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
+ G V + AI+ + + +Y++ G +Y L N ++ L +
Sbjct: 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115
Query: 177 N------PDSAAAYKFRGRAYRLLGKWEEA 200
A + G +++G+++EA
Sbjct: 116 AKSMNDRLGEAKSSGNLGNTLKVMGRFDEA 145
Score = 33.4 bits (77), Expect = 0.049
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 13/91 (14%)
Query: 123 AYND-GKFEDAVNAYSEAIKL------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
++ G+FEDA Y + L A G +Y L + N I + L
Sbjct: 272 SHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331
Query: 176 I------NPDSAAAYKFRGRAYRLLGKWEEA 200
I A A G A+ +G E A
Sbjct: 332 IAQELGDRIGEARACWSLGNAHSAIGGHERA 362
Score = 31.5 bits (72), Expect = 0.20
Identities = 17/125 (13%), Positives = 32/125 (25%), Gaps = 39/125 (31%)
Query: 122 HAYND-GKFEDAVNAYSEAIKLNPSS-------------ALLYAKRGQSYLQLSKPNACI 167
+ G+F++A + L +Y +G+ Q +
Sbjct: 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193
Query: 168 RDCSV----------ALKI------NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
LK+ A G Y LLG ++ A I+
Sbjct: 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA---------IE 244
Query: 212 FDEQA 216
++
Sbjct: 245 HHQER 249
Score = 27.3 bits (61), Expect = 4.3
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 12/102 (11%)
Query: 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL------NPSSALLYAKRGQSYLQLSKPN 164
++ AV Y E +KL + G +Y L
Sbjct: 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240
Query: 165 ACIRDCSVALKI------NPDSAAAYKFRGRAYRLLGKWEEA 200
A I L+I A G ++ LG++E+A
Sbjct: 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282
Score = 26.9 bits (60), Expect = 5.9
Identities = 9/83 (10%), Positives = 16/83 (19%), Gaps = 6/83 (7%)
Query: 142 LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI------NPDSAAAYKFRGRAYRLLG 195
L S+L + S L L + G G
Sbjct: 3 LGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAG 62
Query: 196 KWEEAAVDLRNACKIDFDEQADE 218
+ A + ++
Sbjct: 63 DCRAGVAFFQAAIQAGTEDLRTL 85
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 42.1 bits (99), Expect = 7e-05
Identities = 17/139 (12%), Positives = 46/139 (33%), Gaps = 16/139 (11%)
Query: 88 SEPDEEEPIPDVATDIEVSEEDIDKSNE---KKREAIHAYNDGKFEDAVNAYSEAIKL-- 142
+E+ + D+ +I+ + + E ++ + ++ A+ + +A
Sbjct: 75 MRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLI 134
Query: 143 ----NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI-------NPDSAAAYKFRGRAY 191
A + K +SY + + + A +I N + +
Sbjct: 135 FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194
Query: 192 RLLGKWEEAAVDLRNACKI 210
L ++E+A + A +
Sbjct: 195 LDLKQYEDAISHFQKAYSM 213
Score = 35.2 bits (81), Expect = 0.012
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 13/91 (14%)
Query: 123 AYND-GKFEDAVNAYSEAIKL------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
+ D ++EDA++ + +A + G S+ I A+
Sbjct: 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252
Query: 176 IN------PDSAAAYKFRGRAYRLLGKWEEA 200
+ P AY + + LGK ++A
Sbjct: 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKA 283
Score = 29.0 bits (65), Expect = 1.5
Identities = 11/100 (11%), Positives = 29/100 (29%), Gaps = 13/100 (13%)
Query: 124 YNDGKFEDAVNAYSEAIKL-------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
Y + +++ +A ++ N ++ ++L L + I A +
Sbjct: 154 YYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213
Query: 177 ------NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
G ++E+A + A +
Sbjct: 214 AEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253
Score = 26.7 bits (59), Expect = 6.7
Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 17/108 (15%)
Query: 109 DIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKL-----NPSSALLYAKRGQ 155
+ + + AY GK + A +S+ + + +
Sbjct: 252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311
Query: 156 SYLQLSKPNACIRDCSVALKIN---PDSAAAYKFRGRAYRLLGKWEEA 200
YL A I+ L+ D + Y +++A
Sbjct: 312 LYLSGPDEEA-IQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKA 358
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 40.9 bits (95), Expect = 8e-05
Identities = 19/78 (24%), Positives = 23/78 (29%), Gaps = 10/78 (12%)
Query: 129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK----------PNACIRDCSVALKINP 178
FE K NP A + G L+LS+ I AL I+P
Sbjct: 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77
Query: 179 DSAAAYKFRGRAYRLLGK 196
A G AY
Sbjct: 78 KKDEAVWCIGNAYTSFAF 95
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 39.2 bits (92), Expect = 6e-04
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 122 HAYND-GKFEDAVNAYSEAIKLN----PSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
G V+ + A+++ + + +Y++ G +Y L + L +
Sbjct: 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 72
Query: 177 ------NPDSAAAYKFRGRAYRLLGKWEEA 200
A A G ++LG ++EA
Sbjct: 73 ARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102
Score = 35.7 bits (83), Expect = 0.010
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 145 SSALLYAKRGQSYLQLSKPNACIRDCSVALKIN----PDSAAAYKFRGRAYRLLGKWEEA 200
+S L A G+ + A + A+++ +A Y G AY L + +A
Sbjct: 3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKA 62
Score = 34.5 bits (80), Expect = 0.021
Identities = 22/91 (24%), Positives = 28/91 (30%), Gaps = 13/91 (14%)
Query: 123 AYND-GKFEDAVNAYSEAIKLN------PSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
AY G+FE A Y + + L A G +Y L I L
Sbjct: 232 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291
Query: 176 IN------PDSAAAYKFRGRAYRLLGKWEEA 200
I A G AY LG ++A
Sbjct: 292 IAQELKDRIGEGRACWSLGNAYTALGNHDQA 322
Score = 33.8 bits (78), Expect = 0.041
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 123 AYND-GKFEDAVNAYSEAIKL------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
+ G F DAV A+ + + + + Y+ G +Y+ L + L
Sbjct: 192 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251
Query: 176 IN------PDSAAAYKFRGRAYRLLGKWEEA 200
+ A + G Y LL +E+A
Sbjct: 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282
Score = 31.1 bits (71), Expect = 0.29
Identities = 15/112 (13%), Positives = 27/112 (24%), Gaps = 33/112 (29%)
Query: 122 HAYND-GKFEDAVNAYSEAIKLN------PSSALLYAKRGQSYLQLSKPNACIRDCSV-- 172
+ G F++A+ + ++ A G Y K C
Sbjct: 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGE 150
Query: 173 ------------------ALKI------NPDSAAAYKFRGRAYRLLGKWEEA 200
L + A+ G + LLG + +A
Sbjct: 151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 38.8 bits (91), Expect = 8e-04
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLN----PSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
E G V+ + A+++ + + +Y++ G +Y L +
Sbjct: 14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73
Query: 174 LKI------NPDSAAAYKFRGRAYRLLGKWEEA 200
L + A A G ++LG ++EA
Sbjct: 74 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 106
Score = 35.0 bits (81), Expect = 0.017
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 144 PSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN----PDSAAAYKFRGRAYRLLGKWEE 199
+S L A G+ + A + A+++ +A Y G AY L + +
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65
Query: 200 A 200
A
Sbjct: 66 A 66
Score = 34.6 bits (80), Expect = 0.021
Identities = 24/108 (22%), Positives = 33/108 (30%), Gaps = 19/108 (17%)
Query: 112 KSNEKKREAI------HAYND-GKFEDAVNAYSEAIKLN------PSSALLYAKRGQSYL 158
+ +K E +AY G+FE A Y + + L A G +Y
Sbjct: 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 278
Query: 159 QLSKPNACIRDCSVALKI------NPDSAAAYKFRGRAYRLLGKWEEA 200
L I L I A G AY LG ++A
Sbjct: 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326
Score = 33.4 bits (77), Expect = 0.053
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 123 AYND-GKFEDAVNAYSEAIKL------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
+ G F DAV A+ + + + + Y+ G +Y+ L + L
Sbjct: 196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255
Query: 176 IN------PDSAAAYKFRGRAYRLLGKWEEA 200
+ A + G Y LL +E+A
Sbjct: 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286
Score = 30.0 bits (68), Expect = 0.64
Identities = 19/129 (14%), Positives = 33/129 (25%), Gaps = 41/129 (31%)
Query: 112 KSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLN------PSSALLYAKRGQSY 157
++ EA A + G F++A+ + ++ A G Y
Sbjct: 79 TIGDQLGEA-KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 137
Query: 158 LQLSKPNACIRDCSV--------------------ALKI------NPDSAAAYKFRGRAY 191
K C V L + A+ G +
Sbjct: 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTH 197
Query: 192 RLLGKWEEA 200
LLG + +A
Sbjct: 198 YLLGNFRDA 206
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 38.0 bits (88), Expect = 0.001
Identities = 10/57 (17%), Positives = 21/57 (36%)
Query: 155 QSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
++ L + + A+K +P A+ + G +E A L + K+
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61
Score = 34.6 bits (79), Expect = 0.021
Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 3/105 (2%)
Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
+ +A ++G+ + A+ EAIK +P A L + + ++K+ P
Sbjct: 3 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62
Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223
+ + ++ A A + +E K +
Sbjct: 63 EYLPGASQLRHLVKAAQARKDFAQGAATA---KVLGENEELTKSL 104
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 36.2 bits (84), Expect = 0.002
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 8/95 (8%)
Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALL---YAKRGQSYLQLSKPNACIRDCSVAL 174
A A +GK++DA + ++L P+ G+SY +
Sbjct: 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66
Query: 175 KINPDSA----AAYKFRGRAYRLLGKWEEAAVDLR 205
P K G + GK EA L+
Sbjct: 67 SRYPTHDKAAGGLLK-LGLSQYGEGKNTEAQQTLQ 100
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 37.5 bits (87), Expect = 0.002
Identities = 19/146 (13%), Positives = 49/146 (33%), Gaps = 16/146 (10%)
Query: 81 LDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNE---KKREAIHAYNDGKFEDAVNAYS 137
LD + ++ IE ++ + + ++ ++ ++ +A+ Y
Sbjct: 66 LDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYR 125
Query: 138 EAIKLN------PSSALLYAKRGQSYLQLSKPNACIRDCSVALKI-------NPDSAAAY 184
EA K A + K ++Y + + + + AL I + + +
Sbjct: 126 EAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185
Query: 185 KFRGRAYRLLGKWEEAAVDLRNACKI 210
Y +++A L A ++
Sbjct: 186 FVIAGNYDDFKHYDKALPHLEAALEL 211
Score = 33.6 bits (77), Expect = 0.042
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 11/117 (9%)
Query: 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIR 168
+ + K E + + + Y + L Y + G++Y +
Sbjct: 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86
Query: 169 DCSVALKINPDSAAAY--KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223
K Y FRG ++ EA I + +A++ L V
Sbjct: 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEA---------IGYYREAEKELPFV 134
Score = 32.1 bits (73), Expect = 0.14
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 12/90 (13%)
Query: 123 AYND-GKFEDAVNAYSEAIKL------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
Y+D ++ A+ A++L + A+ SY + + A K
Sbjct: 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250
Query: 176 IN-----PDSAAAYKFRGRAYRLLGKWEEA 200
++ G+ ++A
Sbjct: 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 37.2 bits (85), Expect = 0.004
Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 4/130 (3%)
Query: 46 PPPSKAQSDAPKPEKPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEV 105
+ +++ +P + TT A E V++E E P + E
Sbjct: 67 GVATASETASPASNEAATTETAEAASAAKPEEKASE----VVAETPSAEAKPKSDKETEA 122
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA 165
E ++ +E K A + + + V +E + + ++ +
Sbjct: 123 KPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDD 182
Query: 166 CIRDCSVALK 175
I SV L
Sbjct: 183 AINRGSVVLA 192
Score = 36.1 bits (82), Expect = 0.009
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 46 PPPSKAQSDAPKPEKPFTTPE-PSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIE 104
P S A ++ E +T E E E + GV + + P + A E
Sbjct: 27 PENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTE 86
Query: 105 VSEEDIDKSNEKKREA 120
+E E+K
Sbjct: 87 TAEAASAAKPEEKASE 102
Score = 33.0 bits (74), Expect = 0.089
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 54 DAPKPEKPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEE 108
+ PE E + E E ++ + N G + ++ E VAT E +
Sbjct: 23 ETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASP 77
Score = 29.2 bits (64), Expect = 1.5
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 44 TIPPPSKAQSDAPKPEKPFTTPEPSAP--EEESEESDPELDNTGVISEPDEEEP 95
T S A+ + E TP A ++ E+ PE N G S+P E
Sbjct: 87 TAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEAN 140
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 35.3 bits (81), Expect = 0.013
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 17/105 (16%)
Query: 123 AYNDGKFEDAVNAYSEAIKLNPSS-----------ALLYAKRGQSYLQLSKPNACIR--- 168
A K +A ++A K +S A YAK ++ +
Sbjct: 1 AIAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYL 60
Query: 169 ---DCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
+ + +A A++ G + L + EA + A +
Sbjct: 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM 105
Score = 34.1 bits (78), Expect = 0.028
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 19/117 (16%)
Query: 112 KSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNP------SSALLYAKRGQSY 157
K A Y + E A +AY + + + +A + + G
Sbjct: 27 KWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMML 86
Query: 158 LQLSKPNACIRDCSVALKI-----NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
L + ++ A + PD+AA R +A + A
Sbjct: 87 KDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAA 143
Score = 32.6 bits (74), Expect = 0.079
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 19/121 (15%)
Query: 109 DIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKL-----NPSSALLYAKRGQ 155
+ +N A A+ + +AV +A + P +A + R
Sbjct: 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123
Query: 156 SYLQLSKPNACIRDCSVALKI-----NPDSAA-AYKFRGRAYRLLGKWEEAAVDLRNACK 209
++ + + A + AA R K++EAA L+
Sbjct: 124 KLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183
Query: 210 I 210
+
Sbjct: 184 M 184
Score = 27.2 bits (60), Expect = 4.6
Identities = 11/118 (9%), Positives = 30/118 (25%), Gaps = 36/118 (30%)
Query: 109 DIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL 160
+ ++ E+ R+A KF++A + + + Y ++
Sbjct: 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM--------------YKEM 188
Query: 161 SKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADE 218
P + + A +R + I +++
Sbjct: 189 ENY--------------PTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSED 232
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 34.2 bits (79), Expect = 0.017
Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 22/120 (18%)
Query: 112 KSNEKKREAIHAYND--------GKFEDAVNAYSEAIKL-------NPSSALLYAKRGQS 156
KS + E A + G ++ A + E +L +++ +
Sbjct: 58 KSGDHTAEHR-ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATV 116
Query: 157 YLQLSKPNACIRDCSVALKI------NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
L ++ +L A A++ G + EA A I
Sbjct: 117 ALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
Score = 33.4 bits (77), Expect = 0.035
Identities = 8/97 (8%), Positives = 24/97 (24%), Gaps = 13/97 (13%)
Query: 127 GKFEDAVNAYSEAIKL------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI---- 176
+F++A ++ + + + + G +A R ++
Sbjct: 40 DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL 99
Query: 177 ---NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
++A G A + +
Sbjct: 100 PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 33.9 bits (77), Expect = 0.029
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 5/108 (4%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPS--SALLYAKRGQSYLQLSKPNACIRDCSVALK-- 175
A+ ++ D ++ A K + G + L+ R + A
Sbjct: 142 AVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201
Query: 176 -INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKE 222
+ A + A R G A L + + LK+
Sbjct: 202 AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALKD 249
Score = 30.1 bits (67), Expect = 0.54
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 3/77 (3%)
Query: 127 GKFEDAVNAYSEAIK---LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
F +A +EA + + + +A + +P+ A
Sbjct: 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVA 244
Query: 184 YKFRGRAYRLLGKWEEA 200
+ +YRL E
Sbjct: 245 AALKDPSYRLKTTTAEQ 261
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 32.9 bits (76), Expect = 0.043
Identities = 22/91 (24%), Positives = 28/91 (30%), Gaps = 13/91 (14%)
Query: 123 AYND-GKFEDAVNAYSEAIKLN------PSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
AY G+FE A Y + + L A G +Y L I L
Sbjct: 58 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117
Query: 176 IN------PDSAAAYKFRGRAYRLLGKWEEA 200
I A G AY LG ++A
Sbjct: 118 IAQELKDRIGEGRACWSLGNAYTALGNHDQA 148
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 33.4 bits (76), Expect = 0.047
Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 11/102 (10%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSS-----ALLYAKRGQSYLQLSKPNACIRDCSVAL 174
A A NDG ++A A++ P + + G+ + +
Sbjct: 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80
Query: 175 KIN------PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
++ + + + G + A A ++
Sbjct: 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122
Score = 29.6 bits (66), Expect = 0.90
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 11/99 (11%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKL-----NPSSALLYAKRGQSYLQLSKPN------ACIR 168
+ G ++A + + L S + A + + +
Sbjct: 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 240
Query: 169 DCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
N ++ RA LLG++E A + L
Sbjct: 241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 33.1 bits (75), Expect = 0.054
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 13/102 (12%)
Query: 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184
+ KFE+A + +A + G S+L+ + D ++ Y
Sbjct: 29 DSYKFEEAADLCVQAATIY-RLRKELNLAGDSFLKAA-------DYQKKAGNEDEAGNTY 80
Query: 185 KFRGRAYRLLGKWEEAAVDLRNACKI-----DFDEQADEWLK 221
+ ++ G A L NA +I F A+ +
Sbjct: 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 32.2 bits (73), Expect = 0.077
Identities = 8/96 (8%), Positives = 20/96 (20%)
Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177
++ G+ A+N S + + L+ + +
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70
Query: 178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
D++ L + D
Sbjct: 71 QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPD 106
Score = 31.1 bits (70), Expect = 0.17
Identities = 18/92 (19%), Positives = 31/92 (33%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+FE A + ++ Q + + ++ L NPD+
Sbjct: 54 KQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACE 113
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADE 218
Y +G+ EEA L N K++ Q E
Sbjct: 114 LAVQYNQVGRDEEALELLWNILKVNLGAQDGE 145
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 31.0 bits (71), Expect = 0.25
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 17/95 (17%)
Query: 123 AYND-GKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
Y D K+++A + ++A+ + +P+ A Y + K C A
Sbjct: 52 VYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 111
Query: 174 LKI--------NPDSAAAYKFRGRAYRLLGKWEEA 200
L+I +PD A + GK EE
Sbjct: 112 LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEV 146
Score = 31.0 bits (71), Expect = 0.27
Identities = 17/94 (18%), Positives = 25/94 (26%), Gaps = 16/94 (17%)
Query: 123 AYND-GKFEDAVNAYSEAIKL---------NPSSALLYAKRGQSYLQLSKPNACIRDCSV 172
Y GK++DA Y E + N + ++ + K
Sbjct: 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237
Query: 173 ALKIN------PDSAAAYKFRGRAYRLLGKWEEA 200
P + G YR GK E A
Sbjct: 238 GSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAA 271
Score = 27.1 bits (61), Expect = 5.5
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 17/95 (17%)
Query: 123 AYND-GKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
Y GK+++A A+++ +P A K A
Sbjct: 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153
Query: 174 LKI--------NPDSAAAYKFRGRAYRLLGKWEEA 200
L+I +P+ A Y GK+++A
Sbjct: 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188
Score = 26.7 bits (60), Expect = 5.6
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 178 PDSAAAYKFRGRAYRLLGKWEEA 200
PD A YR K++EA
Sbjct: 40 PDVATMLNILALVYRDQNKYKEA 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 30.2 bits (69), Expect = 0.49
Identities = 17/94 (18%), Positives = 25/94 (26%), Gaps = 16/94 (17%)
Query: 123 AYND-GKFEDAVNAYSEAIKL---------NPSSALLYAKRGQSYLQLSKPNACIRDCSV 172
Y GKF+ A Y E + + + ++ + K
Sbjct: 204 CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263
Query: 173 ALKIN------PDSAAAYKFRGRAYRLLGKWEEA 200
P K G YR GK+E A
Sbjct: 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAA 297
Score = 29.0 bits (66), Expect = 1.2
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 17/95 (17%)
Query: 123 AYND-GKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
Y GK+++A A+++ +P A K A
Sbjct: 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179
Query: 174 LKIN--------PDSAAAYKFRGRAYRLLGKWEEA 200
L+I P+ A Y GK+++A
Sbjct: 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214
Score = 28.3 bits (64), Expect = 2.0
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 17/95 (17%)
Query: 123 AYND-GKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
Y G++E AV +A++ +P A + Y +K + A
Sbjct: 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA 95
Query: 174 LKI--------NPDSAAAYKFRGRAYRLLGKWEEA 200
L I +P AA Y GK++EA
Sbjct: 96 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 130
Score = 26.3 bits (59), Expect = 9.2
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 178 PDSAAAYKFRGRAYRLLGKWEEA 200
P Y G++E A
Sbjct: 24 PARLRTLHNLVIQYASQGRYEVA 46
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.53
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 66 EPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIE----VSEEDIDKSNEKKREAI 121
EP + + EE L S+ E+E D+E E ++K+ R A
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 122 HAYNDGKFEDAV 133
A+ D +
Sbjct: 143 KAFYQQPDADII 154
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase,
ATP-binding, microtubule INT and trafficking domain,
nucleotide-binding; HET: SRT; 2.40A {Sulfolobus
solfataricus} PDB: 2v6y_B*
Length = 83
Score = 28.1 bits (62), Expect = 0.83
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL---------NPSSALLYAKRGQSYL 158
D + + A+ A +GK EDA+ Y +AI++ + Y + Y
Sbjct: 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYK 65
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex,
nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis,
ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Length = 83
Score = 27.7 bits (61), Expect = 0.91
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL---------NPSSALLYAKRGQSYL 158
+ + + A+ A +G E+A+ Y +AI++ + S+A +Y + Y
Sbjct: 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYK 73
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.0
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 152 KRGQSYLQLSKPNACIRDCSVALKIN 177
K+ Q+ L+L D + AL I
Sbjct: 23 KKLQASLKLYAD-----DSAPALAIK 43
Score = 26.8 bits (58), Expect = 3.9
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 167 IRDCSVALKI-NPDSAAA 183
++ +LK+ DSA A
Sbjct: 22 LKKLQASLKLYADDSAPA 39
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 28.7 bits (63), Expect = 1.7
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 42 GGTIPPPSKAQSDAPKPE---KPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPD 98
G K D PE P T E A E+E + ++ ++P+ +
Sbjct: 28 DGHDFEAPKVGEDQGSPEVTDGPKTEEELLALEKEKPAEEKPKEDKPAAAKPETPK---T 84
Query: 99 VATDIEVSEEDIDKSNEKKREA 120
V + + E+ + RE
Sbjct: 85 VTPEWQTVEKKEQQGTVTIREE 106
>3iz5_S 60S ribosomal protein L18A (L18AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_S 3izc_S 3izs_S
Length = 178
Score = 27.8 bits (61), Expect = 2.9
Identities = 0/49 (0%), Positives = 0/49 (0%), Gaps = 5/49 (10%)
Query: 30 ELKFFKDFVESYGGTIPPPSKAQSDAPKPEKPFTTPEPSAPEEESEESD 78
Sbjct: 267 ----- 310
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 27.8 bits (61), Expect = 3.6
Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 7/57 (12%)
Query: 46 PPPSKAQSDAPKPEKPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATD 102
S P + +A + + P ++ PD P P
Sbjct: 9 HHSSGLVPRGSHMVIPSASVTSAASDFLAALHPP-------VTVPDPAPPPPPAPAA 58
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
{Saccharomyces cerevisiae}
Length = 956
Score = 27.7 bits (60), Expect = 4.0
Identities = 9/83 (10%), Positives = 25/83 (30%)
Query: 44 TIPPPSKAQSDAPKPEKPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDI 103
+ P K ++ E + A + S + ++ E + +
Sbjct: 794 DMEVPKKLRTSGKYAETVKDNDDHQAMSTTASPSPEQDQEAKSYTDEQEFMLDKSIDSIE 853
Query: 104 EVSEEDIDKSNEKKREAIHAYND 126
+ E + + + +H+ N
Sbjct: 854 GIILEWFTPNAKYANQCVHSMNK 876
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic
ribosome,homology modeling,de novo modeling,ribos
proteins,novel ribosomal proteins; NMR {Saccharomyces
cerevisiae} PDB: 3izs_t
Length = 106
Score = 25.8 bits (56), Expect = 6.7
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 35 KDFVESYGGTIPPPSKAQSDAPKPEKPFTTPEPSAPEEESEESD 78
KD + ++ P+ + + EE EESD
Sbjct: 55 KDLLVNFSAGAAAPA-GVAGGVAGGEAGEAEAEKEEEEAKEESD 97
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 26.9 bits (59), Expect = 6.7
Identities = 6/44 (13%), Positives = 9/44 (20%), Gaps = 2/44 (4%)
Query: 29 PELKF--FKDFVESYGGTIPPPSKAQSDAPKPEKPFTTPEPSAP 70
PE F ++ Y + A P
Sbjct: 300 PEDSFRTVEECFGEYIVKMEEKQPTADSAIANTGPVVGMRQVTA 343
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 25.8 bits (56), Expect = 7.1
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142
+ ++ K+ + +A G +E+A+ Y A++
Sbjct: 11 TSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 26.2 bits (58), Expect = 8.9
Identities = 7/65 (10%), Positives = 18/65 (27%)
Query: 55 APKPEKPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSN 114
P+ E A + + EL + + + + +V + D +
Sbjct: 173 PPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSED 232
Query: 115 EKKRE 119
+
Sbjct: 233 NSDAQ 237
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin
turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1
PDB: 1t84_A* 2k42_A
Length = 107
Score = 25.4 bits (55), Expect = 9.7
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 32 KFFKDFVESYGGTIPPPSKAQSDAPKPEKPFTTP 65
K DF+E GG + + +
Sbjct: 47 KLIYDFIEDQGGLEAVRQEMRRQGGSGGSQSSEG 80
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_T
Length = 209
Score = 25.4 bits (55), Expect = 9.9
Identities = 3/37 (8%), Positives = 4/37 (10%)
Query: 42 GGTIPPPSKAQSDAPKPEKPFTTPEPSAPEEESEESD 78
S K P+
Sbjct: 65 RAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRV 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.131 0.375
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,693,198
Number of extensions: 223933
Number of successful extensions: 1171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 895
Number of HSP's successfully gapped: 405
Length of query: 231
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 141
Effective length of database: 4,188,903
Effective search space: 590635323
Effective search space used: 590635323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (25.3 bits)