RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13481
(231 letters)
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 63.9 bits (154), Expect = 2e-12
Identities = 17/73 (23%), Positives = 28/73 (38%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
A Y G FE A + + P + + + Q + + ++A+K NP
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 180 SAAAYKFRGRAYR 192
A AY G Y+
Sbjct: 66 LAEAYSNLGNVYK 78
Score = 61.6 bits (148), Expect = 8e-12
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
A G E+AV Y +A+++ P A ++ Q K + A++I+P
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371
Query: 180 SAAAYKFRGRAYRLLG 195
A AY G + +
Sbjct: 372 FADAYSNMGNTLKEMQ 387
Score = 59.3 bits (142), Expect = 5e-11
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
I+++ + ++ E + AY + G +A + Y+ A++L P+ A
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311
Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ +R AL++ P+ AAA+ + GK +EA + + A +I
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
Score = 58.9 bits (141), Expect = 7e-11
Identities = 21/92 (22%), Positives = 33/92 (35%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
A Y G + A++ Y AI+L P Y + + + AL++ P
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
A + R G EEA R A ++
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVF 335
Score = 55.8 bits (133), Expect = 6e-10
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 8/109 (7%)
Query: 108 EDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ 159
+K+ + AY + F+ AV AY A+ L+P+ A+++ Y +
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 160 LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208
+ I A+++ P AY A + G EA A
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Score = 47.0 bits (110), Expect = 7e-07
Identities = 9/60 (15%), Positives = 17/60 (28%)
Query: 152 KRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ Q A R C + PD+ + + + +A A K +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Score = 44.7 bits (104), Expect = 4e-06
Identities = 14/77 (18%), Positives = 30/77 (38%)
Query: 136 YSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG 195
Y +AI+ P+ A+ ++ G + + I A+ ++P+ AY G +
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217
Query: 196 KWEEAAVDLRNACKIDF 212
++ A A +
Sbjct: 218 IFDRAVAAYLRALSLSP 234
Score = 34.6 bits (78), Expect = 0.006
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC 170
+ + + + + + AIK NP A Y+ G Y + + I
Sbjct: 44 FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90
Score = 27.3 bits (59), Expect = 1.7
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 166 CIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
A++ P+ A A+ G + G+ A A +D
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 61.9 bits (149), Expect = 2e-12
Identities = 27/103 (26%), Positives = 51/103 (49%)
Query: 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSV 172
+ E K + + K+ +A Y AI NP A+ Y R YL++ +P + DC
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
AL+++ S A+ F G+ + ++EA +L+ A + +++
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106
Score = 34.6 bits (78), Expect = 0.005
Identities = 9/89 (10%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+++A+ A L L + S L+++K + +++ +
Sbjct: 86 ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK-----KKRWNSIEERRIHQESELH 140
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
+ + E + + + D+
Sbjct: 141 SYLTRLIAAERERELEECQRNHEGHEDDG 169
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 62.0 bits (150), Expect = 3e-12
Identities = 15/98 (15%), Positives = 35/98 (35%)
Query: 122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
+A ++G+ + A+ EAIK +P A L + + ++K+ P+
Sbjct: 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 64
Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
+ ++ A A + +E+ +
Sbjct: 65 PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKS 102
Score = 44.6 bits (105), Expect = 3e-06
Identities = 10/59 (16%), Positives = 22/59 (37%)
Query: 153 RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ ++ L + + A+K +P A+ + G +E A L + K+
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 53.6 bits (128), Expect = 4e-09
Identities = 11/97 (11%), Positives = 22/97 (22%), Gaps = 4/97 (4%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
I + V S + L++ G ++ + A ++ P
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYICQHCLVH--LGDIARYRNQTSQAESYYRHAAQLVPS 184
Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNA--CKIDFDE 214
+ Y G + K F
Sbjct: 185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221
Score = 44.4 bits (104), Expect = 5e-06
Identities = 9/87 (10%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
G + + ++ + ++ G + + +A ++ S +
Sbjct: 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVH 157
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFD 213
G R + +A R+A ++
Sbjct: 158 LGDIARYRNQTSQAESYYRHAAQLVPS 184
Score = 40.2 bits (93), Expect = 1e-04
Identities = 8/95 (8%), Positives = 22/95 (23%), Gaps = 5/95 (5%)
Query: 132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191
+ +A L + + + L + + A K +
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQK---MLVTDLEYALDKKVEQDLW 61
Query: 192 RLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
++ L+ K + E ++
Sbjct: 62 NHA--FKNQITTLQGQAKNRANPNRSEVQANLSLF 94
Score = 39.4 bits (91), Expect = 2e-04
Identities = 9/111 (8%), Positives = 26/111 (23%), Gaps = 5/111 (4%)
Query: 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS---SALLYAKRGQSYLQLSKP 163
D++ + +KK E + F++ + K + S +
Sbjct: 45 VTDLEYALDKKVEQDLWNH--AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFY 102
Query: 164 NACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214
+++ ++ G ++C
Sbjct: 103 TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH 153
Score = 37.1 bits (85), Expect = 0.001
Identities = 11/66 (16%), Positives = 20/66 (30%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
+ A + Y A +L PS+ Y + I ++ + AA
Sbjct: 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN 225
Query: 187 RGRAYR 192
+A
Sbjct: 226 LQKALS 231
Score = 25.5 bits (55), Expect = 5.9
Identities = 6/44 (13%), Positives = 14/44 (31%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKP 163
AI A + G + Y +I + ++ + +
Sbjct: 193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES 236
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 50.3 bits (119), Expect = 7e-09
Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Query: 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCS 171
++ ++K AY F+ A+ Y +A +L+P++ + Y + N C C
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 172 VALKINPDSAAAYKF-------RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223
A+++ ++ Y+ G +Y K+++A + + ++
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 48.9 bits (115), Expect = 2e-08
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC 170
++ NE K + A + G +DA+ YSEAIKL+P + +LY+ R +Y + D
Sbjct: 1 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60
Query: 171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKEV 223
+ + PD Y + A L ++EEA K + + Q E L+ +
Sbjct: 61 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 159
Score = 49.3 bits (116), Expect = 3e-08
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA 165
++ + ++ E K +A + +E+A+ YS+AI+LNPS+A+ Y R +YL+
Sbjct: 3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGY 62
Query: 166 CIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKEV 223
+ D + A++++ Y R + LGK+ A D K+ D+ A +E
Sbjct: 63 ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 121
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 49.4 bits (116), Expect = 1e-07
Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 1/121 (0%)
Query: 103 IEVSEEDIDKSNEKK-REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS 161
+ EE+ + + + E + +G +AV + A++ +P + G + +
Sbjct: 8 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 67
Query: 162 KPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221
+ I L++ PD+ A ++ +A LR+ +
Sbjct: 68 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 127
Query: 222 E 222
E
Sbjct: 128 E 128
Score = 38.6 bits (88), Expect = 4e-04
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
N + E+AV AY A++L P G S + L + AL + S
Sbjct: 214 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273
Query: 181 AAA-----------YKFRGRAYRLLGKWEEA-AVDLRN 206
+ A +LG+ + A D R+
Sbjct: 274 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 311
Score = 33.2 bits (74), Expect = 0.020
Identities = 18/92 (19%), Positives = 38/92 (41%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
+ G+++ AV+ ++ A+ + P+ LL+ K G + ++ + AL++ P
Sbjct: 179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238
Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
+ G + LG EA A +
Sbjct: 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQ 270
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 47.3 bits (111), Expect = 2e-07
Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL---------------NPSSALLY 150
++E ++++ K + + GK+ AV Y + + +
Sbjct: 8 TKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 67
Query: 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
YL+L + + C AL ++ + RG A L+ ++E A D ++
Sbjct: 68 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127
Query: 211 D 211
+
Sbjct: 128 N 128
Score = 31.1 bits (69), Expect = 0.060
Identities = 7/54 (12%), Positives = 17/54 (31%)
Query: 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162
D R +FE A + + +++NP + + + +
Sbjct: 94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE 147
Score = 25.7 bits (55), Expect = 3.6
Identities = 10/53 (18%), Positives = 16/53 (30%)
Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNLK 231
+ AA K +G Y GK+ +A + E + L
Sbjct: 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 65
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 48.8 bits (114), Expect = 2e-07
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 138 EAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-----AAAYKFRGRAYR 192
+ I+ + A A R Q + P+ R +AL+ P A G
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 193 LLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
G+ + ++ ++ +
Sbjct: 63 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96
Score = 39.5 bits (90), Expect = 2e-04
Identities = 13/121 (10%), Positives = 26/121 (21%), Gaps = 10/121 (8%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAK----RGQSYLQLSKPNACIRDCSVALK 175
I+ G A N K ++ ++ + L + +
Sbjct: 220 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 279
Query: 176 IN------PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLN 229
D + Y G+ +A L +A K+
Sbjct: 280 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 339
Query: 230 L 230
Sbjct: 340 Q 340
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
alpha-subunit, N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 334
Score = 47.7 bits (112), Expect = 4e-07
Identities = 9/114 (7%), Positives = 20/114 (17%), Gaps = 4/114 (3%)
Query: 102 DIEVSEEDIDKSNEKKREAIHAYND----GKFEDAVNAYSEAIKLNPSSALLYAKRGQSY 157
S + + + + + Y + +
Sbjct: 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKS 252
Query: 158 LQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
L ++ N RA L +E +D
Sbjct: 253 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306
Score = 26.9 bits (58), Expect = 2.1
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDL 204
+ S L NPD A + R + L +
Sbjct: 49 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESA 86
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 46.3 bits (108), Expect = 9e-07
Identities = 16/106 (15%), Positives = 37/106 (34%)
Query: 91 DEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLY 150
DE++ + E S+++ N + + E ++ L +
Sbjct: 153 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 212
Query: 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK 196
G+ YL L ++ +A+ N + +++ LLG+
Sbjct: 213 FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258
Score = 41.7 bits (96), Expect = 3e-05
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 4/104 (3%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIK----LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
A+ + E + + + + A L +RG Y L D S AL
Sbjct: 6 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65
Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
I PD + + G G ++ A + ++D
Sbjct: 66 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 109
Score = 35.9 bits (81), Expect = 0.002
Identities = 9/95 (9%), Positives = 28/95 (29%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
A ++ + ++ + + E + + + + D + +
Sbjct: 148 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 207
Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214
+ + G+ Y LG + A + A +
Sbjct: 208 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 44.8 bits (105), Expect = 2e-06
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 4/115 (3%)
Query: 119 EAIHAYNDGKFEDAVNAYSEAI----KLNPSSALLYAKRGQSYLQLSKPNACIRDCSVAL 174
EAI +N+G + A+ + + + G Y L + + ++
Sbjct: 4 EAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI 63
Query: 175 KINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLN 229
+ A AY RG Y K++ A DL+ A Q ++ KL
Sbjct: 64 NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 118
Score = 39.0 bits (90), Expect = 2e-04
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 18/95 (18%)
Query: 121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
+ Y K++ A+ EA+ N I + L+ +
Sbjct: 78 MLYYQTEKYDLAIKDLKEALIQLR------------------GNQLIDYKILGLQFKLFA 119
Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
Y +W++A L A + + +
Sbjct: 120 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154
Score = 26.3 bits (57), Expect = 2.5
Identities = 2/36 (5%), Positives = 9/36 (25%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ 159
+++ A + A + + +
Sbjct: 131 AKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl
isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Length = 153
Score = 43.1 bits (100), Expect = 4e-06
Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 16/140 (11%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSE----------------AIKLNPSSALL 149
EE + + + K E + + +A+ Y E K
Sbjct: 10 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 69
Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
Y + I S LKI+ ++ A G A G EEA +L A
Sbjct: 70 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129
Query: 210 IDFDEQADEWLKEVTPNKLN 229
++ + E+ NKL
Sbjct: 130 LNPNNLDIRNSYELCVNKLK 149
Score = 26.1 bits (56), Expect = 2.8
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162
G E+A +A LNP++ + +L +
Sbjct: 110 ANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 150
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 169
Score = 43.1 bits (100), Expect = 6e-06
Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 17/138 (12%)
Query: 91 DEEEPIP-DVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEA---------- 139
D P D D++ ++ + S + K + +E A+ Y++
Sbjct: 4 DSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA 63
Query: 140 ------IKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193
KL P + G L++S + C AL+I+P + A R + ++
Sbjct: 64 AEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG 123
Query: 194 LGKWEEAAVDLRNACKID 211
L ++++A DL+ A +I
Sbjct: 124 LKEYDQALADLKKAQEIA 141
Score = 27.4 bits (59), Expect = 1.2
Identities = 4/35 (11%), Positives = 16/35 (45%)
Query: 128 KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162
+++ A+ +A ++ P + A+ + ++
Sbjct: 126 EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 42.6 bits (99), Expect = 2e-05
Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 1/92 (1%)
Query: 139 AIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK-W 197
I + +Y + + + A+++N + + FR + L K
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94
Query: 198 EEAAVDLRNACKIDFDEQADEWLKEVTPNKLN 229
E + + + V L
Sbjct: 95 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR 126
Score = 42.2 bits (98), Expect = 2e-05
Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 4/126 (3%)
Query: 89 EPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL 148
+P + P+ I S++ D + R + D + E A +AI+LN ++
Sbjct: 22 DPVPQNDGPNPVVQIIYSDKFRDVYD-YFRAVLQR--DERSERAFKLTRDAIELNAANYT 78
Query: 149 LYAKRGQSYLQLSK-PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
++ R L K + + + ++ P + + R L + + +
Sbjct: 79 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 138
Query: 208 CKIDFD 213
D
Sbjct: 139 LNQDAK 144
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 41.2 bits (95), Expect = 3e-05
Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 16/134 (11%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEA---------------IKLNPSSALLY 150
SEE +++S K + +GK++ A+ Y + K +
Sbjct: 6 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 65
Query: 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
+L+L +A I C+ AL+++ ++ RG A+ + +E A D + ++
Sbjct: 66 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125
Query: 211 D-FDEQADEWLKEV 223
++ A L
Sbjct: 126 YPNNKAAKTQLAVC 139
Score = 26.6 bits (57), Expect = 2.0
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNLK 231
+ + K RG Y GK+++A + + E + + L L
Sbjct: 11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 63
Score = 25.0 bits (53), Expect = 7.8
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA 165
FE A + + ++L P++ + ++ + A
Sbjct: 112 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 148
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 39.4 bits (91), Expect = 3e-05
Identities = 8/84 (9%), Positives = 23/84 (27%), Gaps = 7/84 (8%)
Query: 120 AIHAYNDGKFEDAVNAYSEAIKL-------NPSSALLYAKRGQSYLQLSKPNACIRDCSV 172
AY + + +A++ + + Q + +
Sbjct: 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71
Query: 173 ALKINPDSAAAYKFRGRAYRLLGK 196
L+++P+ A ++ K
Sbjct: 72 LLELDPEHQRANGNLKYFEYIMAK 95
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR,
middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 179
Score = 38.3 bits (88), Expect = 3e-04
Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 29/141 (20%)
Query: 96 IPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL------- 148
IPD D+ + K +HA G+FE A S A++ L
Sbjct: 1 IPDNTCDLGRFVAE-------KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQ 53
Query: 149 ---------------LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193
+ + ++ + + +A I + +P + AY L
Sbjct: 54 FVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYL 113
Query: 194 LGKWEEAAVDLRNACKIDFDE 214
+ +A R D+
Sbjct: 114 SDRQSDALGAYRRVKTTLADD 134
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium
tepidum [TaxId: 1097]}
Length = 156
Score = 33.6 bits (75), Expect = 0.008
Identities = 9/83 (10%), Positives = 28/83 (33%), Gaps = 12/83 (14%)
Query: 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS------------SALLYAKRGQ 155
+++ + +A G++++A A++++ + A +A +
Sbjct: 4 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAE 63
Query: 156 SYLQLSKPNACIRDCSVALKINP 178
+ L + + AL
Sbjct: 64 ALAGLRSFDEALHSADKALHYFN 86
Score = 30.1 bits (66), Expect = 0.12
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 175 KINPDSAAAYKFRGRAYRLL--GKWEEAAVDLRNACKID 211
K + AY A R L G+++EAA + R A +I
Sbjct: 1 KPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEIS 39
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 29.3 bits (65), Expect = 0.18
Identities = 6/78 (7%), Positives = 19/78 (24%), Gaps = 2/78 (2%)
Query: 121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYA--KRGQSYLQLSKPNACIRDCSVALKINP 178
+ + + E + +L + ++ L+ P
Sbjct: 44 VRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 103
Query: 179 DSAAAYKFRGRAYRLLGK 196
+ A + + + K
Sbjct: 104 QNNQAKELERLIDKAMKK 121
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit
tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 145
Score = 28.7 bits (62), Expect = 0.32
Identities = 5/18 (27%), Positives = 5/18 (27%)
Query: 127 GKFEDAVNAYSEAIKLNP 144
FE K NP
Sbjct: 11 LLFEQIRQDAENTYKSNP 28
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 29.2 bits (64), Expect = 0.41
Identities = 16/125 (12%), Positives = 32/125 (25%), Gaps = 16/125 (12%)
Query: 112 KSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLN------PSSALLYAKRGQSY 157
+ K EA + A +++ +A + Y + + +
Sbjct: 28 SDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF 87
Query: 158 LQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQAD 217
+ A++I + + L E D A E A
Sbjct: 88 KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID--CYELAG 145
Query: 218 EWLKE 222
EW +
Sbjct: 146 EWYAQ 150
Score = 28.4 bits (62), Expect = 0.64
Identities = 2/26 (7%), Positives = 12/26 (46%)
Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNP 144
+A++ + + + + ++L+
Sbjct: 246 DAVNEGDSEQLSEHCKEFDNFMRLDK 271
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1
protein) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 27.1 bits (60), Expect = 0.49
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL 142
+ ++ K+ + +A G +E+A+ Y A++
Sbjct: 4 TSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 40
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 93
Score = 25.6 bits (56), Expect = 2.1
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL---------NPSSALLYAKRGQSY 157
+ D + + A+ + +++ A+ Y E I + S + + Y
Sbjct: 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGY 68
Query: 158 LQ 159
+
Sbjct: 69 MD 70
>d1dpea_ c.94.1.1 (A:) Dipeptide-binding protein {Escherichia coli
[TaxId: 562]}
Length = 507
Score = 26.2 bits (56), Expect = 4.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 86 VISEPDEEEPIPDVATDIEVSE 107
V + E IP +A EVSE
Sbjct: 37 VEFKIGTTEVIPGLAEKWEVSE 58
>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 138
Score = 25.3 bits (55), Expect = 4.7
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 98 DVATDIEVSEEDIDKSNEKKREAIHAYNDGKF--EDAVNAYSEAIKLNPSSALLY 150
D+ + +E + + +K+ GK D K+ P S +L
Sbjct: 2 DIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQ 56
>d1yb3a1 d.296.1.2 (A:2-167) Hypothetical protein PF0168 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 166
Score = 25.2 bits (55), Expect = 5.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 108 EDIDKSNEKKREAIHAYNDGKFEDAVNAY 136
DI + E+ +E + + + + NAY
Sbjct: 14 GDIFELREELKEELKGFTVEEVSEVFNAY 42
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 505
Score = 25.9 bits (56), Expect = 5.0
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208
+ + PD+ AA + + A LG E A RN+
Sbjct: 453 VNRLVFAEPDNRAARELQADALEQLGYQAENAGW-RNSY 490
>d1iyjb1 a.170.1.1 (B:2403-2598) BRCA2 helical domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 196
Score = 24.5 bits (53), Expect = 9.6
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 173 ALKINPDSAAAYKFRGRAY 191
+ +N +A ++F +
Sbjct: 77 CISVNSKNAEYFQFAIEDH 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.131 0.375
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 902,176
Number of extensions: 43528
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 78
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.6 bits)