BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13485
(152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus
norvegicus GN=Usp54 PE=2 SV=2
Length = 1588
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 13 GIFENLSDVF-HGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREV 71
G L D+F D+ A + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+
Sbjct: 268 GTCLKLGDLFFRVTDDRAKQSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEI 326
Query: 72 GPRWEQV 78
GP+W+ V
Sbjct: 327 GPKWKDV 333
>sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus
GN=Usp54 PE=1 SV=2
Length = 1588
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 13 GIFENLSDVF-HGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREV 71
G L D+F D+ A + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+
Sbjct: 268 GTCLKLGDLFFRVTDDRAKQSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEI 326
Query: 72 GPRWEQV 78
GP+W+ V
Sbjct: 327 GPKWKDV 333
>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens
GN=USP54 PE=1 SV=4
Length = 1684
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 13 GIFENLSDVF-HGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREV 71
G L D+F D+ A + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+
Sbjct: 268 GTCLKLGDLFFRVTDDRAKQSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEI 326
Query: 72 GPRWEQV 78
GP+W+ V
Sbjct: 327 GPKWKDV 333
>sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus
GN=Usp53 PE=2 SV=2
Length = 1069
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 26 DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRS 80
D A + LH LVG++ Y +HY F FHTK W++FDDA V+E+G RW+ V S
Sbjct: 281 DENATDSELH-LVGMICYTSRHYCAFAFHTKSSKWVFFDDAHVKEMGTRWKDVVS 334
>sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens
GN=USP53 PE=2 SV=2
Length = 1073
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 18 LSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQ 77
L +F+ + A LVG++ Y +HY F FHTK W++FDDA V+E+G RW+
Sbjct: 272 LPGLFYRVTDENAKNSELNLVGMICYTSQHYCAFAFHTKSSKWVFFDDANVKEIGTRWKD 331
Query: 78 VRS 80
V S
Sbjct: 332 VVS 334
>sp|Q6P8X6|UBP50_MOUSE Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Mus musculus
GN=Usp50 PE=2 SV=1
Length = 390
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 33 PLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNS 87
P++ L VV ++G HY+ F ++ + W FDD V E+ Q +A+ F S
Sbjct: 303 PMYNLCAVVNHFGDLDGGHYTAFCKNSVTQAWYSFDDTRVSEIPDTSVQTATAYLLFYS 361
>sp|Q67N94|EFP_SYMTH Elongation factor P OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=efp PE=3 SV=1
Length = 185
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 4 FLHVCPASGGIF--ENLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWI 61
FLHV P G F L ++ G A T V F + VW+
Sbjct: 25 FLHVKPGKGAAFVRTKLKNILTG---ATIETTFRAGEKVEQANVDRREYQFLYADQGVWV 81
Query: 62 YFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAAPKASLLPLPL-SLYKLELTRPFPSFS 120
+ ++ T ++ EQV +A F T+ A+ K ++ + L + +L++ P F
Sbjct: 82 FMNNETFEQIELTEEQVGNAPNFLLENMTVQIASWKGQVIGVDLPNTVELKVVETEPGFK 141
Query: 121 G 121
G
Sbjct: 142 G 142
>sp|P32571|UBP4_YEAST Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DOA4 PE=1 SV=2
Length = 926
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 35 HQLVGVV----TYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFY--FFNSE 88
++L GV T YG HY+ + K W+YFDD + V + + + S Y F++
Sbjct: 864 YELYGVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADAINSNAYVLFYHRV 923
Query: 89 Y 89
Y
Sbjct: 924 Y 924
>sp|A6ZY34|UBP4_YEAS7 Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain YJM789) GN=DOA4 PE=3 SV=1
Length = 926
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 35 HQLVGVV----TYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFY--FFNSE 88
++L GV T YG HY+ + K W+YFDD + V + + + S Y F++
Sbjct: 864 YELYGVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADAINSNAYVLFYHRV 923
Query: 89 Y 89
Y
Sbjct: 924 Y 924
>sp|B3LGK1|UBP4_YEAS1 Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=DOA4 PE=3 SV=1
Length = 926
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 35 HQLVGVV----TYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFY--FFNSE 88
++L GV T YG HY+ + K W+YFDD + V + + + S Y F++
Sbjct: 864 YELYGVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADAINSNAYVLFYHRV 923
Query: 89 Y 89
Y
Sbjct: 924 Y 924
>sp|Q6FQF0|UBP4_CANGA Ubiquitin carboxyl-terminal hydrolase 4 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DOA4 PE=3 SV=1
Length = 887
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 42 TYYGKHYSTFFFHTKLKVWIYFDDATVREV 71
T YG HY+++ K WIYFDD R V
Sbjct: 837 TLYGGHYTSYVDKGPEKGWIYFDDTVYRPV 866
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11
PE=2 SV=4
Length = 921
Score = 32.7 bits (73), Expect = 0.84, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 35 HQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFF 85
+ L+ V +YG HY+TF + W YFDD +V V + ++A+ F
Sbjct: 831 YDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLF 885
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11
PE=1 SV=3
Length = 963
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 35 HQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFF 85
+ L+ V +YG HY+TF + W YFDD +V V + ++A+ F
Sbjct: 872 YDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLF 926
>sp|Q4R6D3|UBP50_MACFA Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Macaca
fascicularis GN=USP50 PE=2 SV=1
Length = 373
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 33 PLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNS 87
P + L VV ++G HY+ F ++ + W FDD V E+ Q +A+ F S
Sbjct: 304 PKYNLCAVVNHFGDLDGGHYTAFCKNSFTQAWYSFDDTRVSEIPDTSVQNATAYLLFYS 362
>sp|A6W5U4|RS3_KINRD 30S ribosomal protein S3 OS=Kineococcus radiotolerans (strain ATCC
BAA-149 / DSM 14245 / SRS30216) GN=rpsC PE=3 SV=1
Length = 282
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 33 PLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREV 71
PLH L + Y T F +KVWIY D T RE+
Sbjct: 178 PLHTLRANIDYGFYEARTTFGRIGVKVWIYHGDITSREL 216
>sp|P39944|UBP5_YEAST Ubiquitin carboxyl-terminal hydrolase 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP5 PE=1 SV=1
Length = 805
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 35 HQLVGVVTY----YGKHYSTFFFHTKLKVWIYFDDATVREV 71
++L GV + YG HY+++ + K W +FDD+ R +
Sbjct: 745 YRLYGVACHSGSLYGGHYTSYVYKGPKKGWYFFDDSLYRPI 785
>sp|P03356|POL_MLVAV Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2
Length = 1196
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 55 TKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLY--SAAPKAS 99
TKLK I+F+ + + VGP+ + ++ EY LY SA P+ S
Sbjct: 94 TKLKAQIHFEGSGAQVVGPKGQPLQVLTLNLEDEYRLYETSAEPEVS 140
>sp|B8HD00|RS3_ARTCA 30S ribosomal protein S3 OS=Arthrobacter chlorophenolicus (strain
A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=rpsC PE=3
SV=1
Length = 276
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 33 PLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREV 71
PLH L + Y T F +KVWIY D T +E+
Sbjct: 178 PLHTLRANIDYGFYEAKTTFGRIGVKVWIYKGDVTAKEL 216
>sp|Q754R5|UBP4_ASHGO Ubiquitin carboxyl-terminal hydrolase 4 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=DOA4 PE=3 SV=2
Length = 852
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 35 HQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAF-YFFNSEY 89
+QL G+ + G HY+ + + W Y+DD W Q+RSA Y + Y
Sbjct: 790 YQLYGIACHDGTLRAGHYTAYVNKGAVLGWCYYDDTN-------WRQIRSAREYITQNAY 842
Query: 90 TLY 92
L+
Sbjct: 843 VLF 845
>sp|P39538|UBP12_YEAST Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP12 PE=1 SV=1
Length = 1254
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 47 HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFF 85
HY+ + + W YFDD+ V E P SA+ F
Sbjct: 1068 HYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLF 1106
>sp|A9WSV3|RS3_RENSM 30S ribosomal protein S3 OS=Renibacterium salmoninarum (strain ATCC
33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235)
GN=rpsC PE=3 SV=1
Length = 282
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 33 PLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREV 71
PLH L + Y T F +KVWIY D T +E+
Sbjct: 178 PLHTLRAQIDYGFFEAKTTFGRIGVKVWIYKGDVTAKEL 216
>sp|A1R8T9|RS3_ARTAT 30S ribosomal protein S3 OS=Arthrobacter aurescens (strain TC1)
GN=rpsC PE=3 SV=1
Length = 273
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 33 PLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREV 71
PLH L + Y T F +KVWIY D T +E+
Sbjct: 178 PLHTLRANIDYGFYEAKTTFGRIGVKVWIYKGDVTAKEL 216
>sp|Q7ZUM8|UBP44_DANRE Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44
PE=2 SV=1
Length = 695
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 34 LHQLVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATV 68
L+QL VV ++GK HY+ F ++T+ W++ +D+ +
Sbjct: 624 LYQLSAVVMHHGKGFGSGHYTAFCYNTEGGFWVHCNDSKL 663
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 27 NAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAF 82
+++A T + L+ V+ ++G HY + + ++W FDD +V EV Q A+
Sbjct: 604 DSSALTTTYDLLSVICHHGTASSGHYIAYCRNELNQLWYEFDDQSVTEVSESCVQNAEAY 663
Query: 83 YFF 85
F
Sbjct: 664 VLF 666
>sp|O62653|SUIS_SUNMU Sucrase-isomaltase, intestinal OS=Suncus murinus GN=SI PE=2 SV=3
Length = 1813
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 45 GKHYSTFFFHTKLKVWIYFDDATVREVGPRW 75
G HY T+ + KVW+Y D T +G W
Sbjct: 424 GNHYKTYERGNEQKVWVYQSDGTTPLIGEVW 454
>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus
GN=Usp4 PE=1 SV=1
Length = 961
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 25 CDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRS 80
CD AA ++ L+ V +YG HY+ + + W YFDD++V ++
Sbjct: 854 CDRAARPY-VYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKA 912
Query: 81 AFYFF 85
A+ F
Sbjct: 913 AYVLF 917
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,821,688
Number of Sequences: 539616
Number of extensions: 2615865
Number of successful extensions: 6362
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6341
Number of HSP's gapped (non-prelim): 30
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)