Query psy13485
Match_columns 152
No_of_seqs 98 out of 117
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 20:35:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nhe_A Ubiquitin carboxyl-term 99.4 1.4E-12 4.9E-17 104.4 8.0 74 14-97 267-344 (348)
2 1nb8_A Ubiquitin carboxyl-term 99.3 6.1E-12 2.1E-16 104.2 7.8 82 12-97 220-316 (353)
3 2y6e_A Ubiquitin carboxyl-term 99.3 1.1E-11 3.9E-16 101.9 8.0 74 15-97 283-360 (367)
4 2ayn_A Ubiquitin carboxyl-term 99.3 1.1E-11 3.8E-16 102.5 7.9 62 32-96 325-394 (404)
5 1vjv_A Ubiquitin carboxyl-term 99.2 1.9E-11 6.3E-16 102.4 8.1 62 32-95 343-413 (415)
6 2gfo_A Ubiquitin carboxyl-term 99.2 7E-11 2.4E-15 99.7 8.4 58 32-95 334-395 (396)
7 3i3t_A Ubiquitin carboxyl-term 99.2 7.2E-11 2.5E-15 94.8 7.8 56 32-95 291-350 (355)
8 2f1z_A Ubiquitin carboxyl-term 99.1 4.8E-11 1.6E-15 104.0 7.1 82 12-97 389-485 (522)
9 3mhs_A Ubiquitin carboxyl-term 99.1 2E-10 6.8E-15 98.0 8.5 76 12-94 387-472 (476)
10 3ihp_A Ubiquitin carboxyl-term 98.4 3.8E-07 1.3E-11 85.6 7.1 54 33-96 795-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 96.0 0.0061 2.1E-07 53.5 4.9 33 32-64 274-307 (374)
12 4ekf_A Adenain; alpha and beta 55.6 5.1 0.00018 32.7 1.9 20 45-64 52-71 (204)
13 3ijm_A Uncharacterized restric 45.8 9.2 0.00032 29.8 1.9 30 49-79 112-143 (151)
14 3o65_A Putative ataxin-3-like 30.1 42 0.0014 26.8 3.4 35 36-72 109-145 (191)
No 1
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.36 E-value=1.4e-12 Score=104.42 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=59.3
Q ss_pred ceEeccccccccCCCCCCCCceeEEEEEEeecc----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhhccccee
Q psy13485 14 IFENLSDVFHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEY 89 (152)
Q Consensus 14 teLdLs~LF~~vd~~a~~~t~Y~LvgmVCYyG~----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~r~qP~v 89 (152)
++|||+.....-. ....|.|.|||||+|. ||+||+++.+.++|+.|||+.|+.|. +++|. .-+|+|
T Consensus 267 ~~ldl~~~~~~~~----~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~--~~~v~----~~~aY~ 336 (348)
T 3nhe_A 267 RDLDLREFASENT----NHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMS--SSQVR----TSDAYL 336 (348)
T ss_dssp SCEECGGGBCTTC----CCCEEEEEEEEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEEC--GGGTC----CTTEEE
T ss_pred CcCCHhhhcCCCC----CCCcEEEEEEEEccCCCCCcccEEEEccCCCCcEEEEeCCCceECC--HHHcC----CCCceE
Confidence 3577776432211 1357999999999997 99999998889999999999999998 77774 468999
Q ss_pred eeeecCCC
Q psy13485 90 TLYSAAPK 97 (152)
Q Consensus 90 LFYEaapk 97 (152)
|||++.+.
T Consensus 337 LfY~r~~~ 344 (348)
T 3nhe_A 337 LFYELASP 344 (348)
T ss_dssp EEEEECC-
T ss_pred EEEEecCC
Confidence 99999653
No 2
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.28 E-value=6.1e-12 Score=104.20 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=65.3
Q ss_pred ccceEeccccccccCCCCCCCCceeEEEEEEeec----cceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhh----
Q psy13485 12 GGIFENLSDVFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFY---- 83 (152)
Q Consensus 12 L~teLdLs~LF~~vd~~a~~~t~Y~LvgmVCYyG----~HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~---- 83 (152)
...+|||+......++. ....|.|+|||||+| -||+||+++...++|+.|||+.|..|. |++|++.|.
T Consensus 220 fp~~Ldl~~~~~~~~~~--~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~--~~~v~~~~~gg~~ 295 (353)
T 1nb8_A 220 FPEQLPLDEFLQKTDPK--DPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT--KEEAIEHNYGGHD 295 (353)
T ss_dssp CCSEEECGGGBSSCCTT--SCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEECC--HHHHTGGGSCCC-
T ss_pred CCCeeehhhhhcccCCC--CCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEECC--HHHHHHHhcCCCc
Confidence 34578887643332222 235799999999999 499999998889999999999999998 999998774
Q ss_pred -------cccceeeeeecCCC
Q psy13485 84 -------FFNSEYTLYSAAPK 97 (152)
Q Consensus 84 -------r~qP~vLFYEaapk 97 (152)
.-+|+||||++...
T Consensus 296 ~~~~~~~~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 296 DDLSVRHCTNAYMLVYIRESK 316 (353)
T ss_dssp ------CCEEEEEEEEEETTT
T ss_pred cccccCcCCeEEEEEEEECch
Confidence 15799999999654
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=101.94 Aligned_cols=74 Identities=23% Similarity=0.338 Sum_probs=58.6
Q ss_pred eEeccccccccCCCCCCCCceeEEEEEEeecc----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhhcccceee
Q psy13485 15 FENLSDVFHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYT 90 (152)
Q Consensus 15 eLdLs~LF~~vd~~a~~~t~Y~LvgmVCYyG~----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~r~qP~vL 90 (152)
.|||+..-.. .......|.|+|||+|+|. ||+||+++..+++|+.|||+.|+.|. +++|+ .-+|+||
T Consensus 283 ~Ldl~~~~~~---~~~~~~~Y~L~avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~--~~~v~----~~~aYiL 353 (367)
T 2y6e_A 283 GLNMSEFVCN---LSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLAS--EDQIV----TKAAYVL 353 (367)
T ss_dssp CEECGGGBSC---SSSCCCEEEEEEEEEEECSSSSCEEEEEEECTTTCCEEEEETTEEEECC--GGGTS----STTEEEE
T ss_pred cCChhhhccC---CCCCCceEEEEEEeecCCCCCCCeeeEEEEcCCCCeEEEECCCCceECC--HHHcC----CCCcEEE
Confidence 4666653221 1122457999999999984 99999998888999999999999998 78876 3689999
Q ss_pred eeecCCC
Q psy13485 91 LYSAAPK 97 (152)
Q Consensus 91 FYEaapk 97 (152)
||++...
T Consensus 354 fY~r~~~ 360 (367)
T 2y6e_A 354 FYQRRDD 360 (367)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9999653
No 4
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.25 E-value=1.1e-11 Score=102.47 Aligned_cols=62 Identities=27% Similarity=0.341 Sum_probs=54.5
Q ss_pred CCceeEEEEEEeecc-----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhh---cccceeeeeecCC
Q psy13485 32 TPLHQLVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFY---FFNSEYTLYSAAP 96 (152)
Q Consensus 32 ~t~Y~LvgmVCYyG~-----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~---r~qP~vLFYEaap 96 (152)
...|.|+|||||.|. ||+||+++ +.++|+.|||+.|..|. +++|++.+. .-.|+||||++..
T Consensus 325 ~~~Y~L~avv~H~G~s~~~GHY~a~v~~-~~~~W~~fnD~~V~~v~--~~~v~~~~~g~~~~~aYiLfY~r~~ 394 (404)
T 2ayn_A 325 CGYYDLQAVLTHQGRSSSSGHYVSWVKR-KQDEWIKFDDDKVSIVT--PEDILRLSGGGDWHIAYVLLYGPRR 394 (404)
T ss_dssp CSEEEEEEEEEEESSSTTSSEEEEEEEE-ETTEEEEEBTTBCCCBC--HHHHGGGGSSSSSCEEEEEEEECC-
T ss_pred CceEEEEEEEEecCCCCCCCCeEEEEEC-CCCeEEEeecccceecC--HHHHHhhhCCCCCceEEEEEEEecC
Confidence 367999999999997 99999996 48899999999999998 999988875 4569999999854
No 5
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.23 E-value=1.9e-11 Score=102.44 Aligned_cols=62 Identities=26% Similarity=0.359 Sum_probs=55.2
Q ss_pred CCceeEEEEEEeecc-----ceEEEEEe-eccceEEEEeCccceeeCCChHHHHHHhh---cccceeeeeecC
Q psy13485 32 TPLHQLVGVVTYYGK-----HYSTFFFH-TKLKVWIYFDDATVREVGPRWEQVRSAFY---FFNSEYTLYSAA 95 (152)
Q Consensus 32 ~t~Y~LvgmVCYyG~-----HY~aF~y~-~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~---r~qP~vLFYEaa 95 (152)
...|.|+|||++.|+ ||+||+++ ...++|+.|||+.|..|. +++|.+.+. .-.|+||||++.
T Consensus 343 ~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~--~~~v~~~~~g~~~~~aYiLfY~r~ 413 (415)
T 1vjv_A 343 SCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVE--KEKIESLAGGGESDSALILMYKGF 413 (415)
T ss_dssp SSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEEC--HHHHHGGGCCTTSCEEEEEEEEET
T ss_pred CceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcC--HHHHhhhcCCCCcceEEEEEEEec
Confidence 467999999999997 99999997 678999999999999998 899988775 345999999984
No 6
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.16 E-value=7e-11 Score=99.67 Aligned_cols=58 Identities=22% Similarity=0.416 Sum_probs=51.6
Q ss_pred CCceeEEEEEEeec----cceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhhcccceeeeeecC
Q psy13485 32 TPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAA 95 (152)
Q Consensus 32 ~t~Y~LvgmVCYyG----~HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~r~qP~vLFYEaa 95 (152)
...|.|+|||+|+| -||+||+++...++|+.|||+.|+.|. +++|. .-+|+||||++.
T Consensus 334 ~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~--~~~v~----~~~aYiLfY~r~ 395 (396)
T 2gfo_A 334 LKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDIS--VSSVK----SSAAYILFYTSL 395 (396)
T ss_dssp CCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEECC--HHHHS----CTTEEEEEEECC
T ss_pred CceEEEEEEEEecCCCCCCceEEEEcCCCCCCEEEEeCCCeEECC--HHHcC----CCCceEEEEEEc
Confidence 35799999999998 499999998888999999999999998 77775 468999999973
No 7
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.15 E-value=7.2e-11 Score=94.78 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=49.1
Q ss_pred CCceeEEEEEEeecc----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhhcccceeeeeecC
Q psy13485 32 TPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAA 95 (152)
Q Consensus 32 ~t~Y~LvgmVCYyG~----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~r~qP~vLFYEaa 95 (152)
...|.|+|||+|+|. ||+||++. .+.|+.|||+.|+.|. +++|++ -+|+||||++.
T Consensus 291 ~~~Y~L~avv~H~G~~~~GHY~~~~~~--~~~W~~~nD~~V~~v~--~~~v~~----~~aYiLfY~r~ 350 (355)
T 3i3t_A 291 SPVYQLYALCNHSGSVHYGHYTALCRC--QTGWHVYNDSRVSPVS--ENQVAS----SEGYVLFYQLM 350 (355)
T ss_dssp CCEEEEEEEEEEEEETTEEEEEEEEEE--TTEEEEEETTEEEEEC--HHHHHT----SCCSEEEEEEC
T ss_pred CcceEEEEEEEecCCCCCCeEEEEEEc--CCeEEEEcCCCcEECC--HHHcCC----CCcEEEEEEec
Confidence 357999999999994 99999994 5679999999999998 888864 58999999984
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.15 E-value=4.8e-11 Score=103.96 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=64.7
Q ss_pred ccceEeccccccccCCCCCCCCceeEEEEEEeec----cceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhh----
Q psy13485 12 GGIFENLSDVFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFY---- 83 (152)
Q Consensus 12 L~teLdLs~LF~~vd~~a~~~t~Y~LvgmVCYyG----~HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~---- 83 (152)
...+|||+..-..-++. ....|.|+|||||+| -||+||+++...++|+.|||+.|..|. +++|++.|.
T Consensus 389 fp~~Ldl~~~~~~~~~~--~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~--~~~v~~~~~Gg~~ 464 (522)
T 2f1z_A 389 FPEQLPLDEFLQKTDPK--DPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT--KEEAIEHNYGGHD 464 (522)
T ss_dssp CCSEEECGGGBSSCCTT--SCCEEEEEEEEEEECSSSCSEEEEEECTTSSSCCEEEETTEEEECC--HHHHSTTSSCCC-
T ss_pred CCCeecchhhhccccCC--CCcEEEEEEEEEecccCCCceEEEEEecCCCCCEEEEECceeEECC--HHHHHHhhcCCCc
Confidence 34578887643322222 235799999999999 499999998788999999999999998 999998664
Q ss_pred -------cccceeeeeecCCC
Q psy13485 84 -------FFNSEYTLYSAAPK 97 (152)
Q Consensus 84 -------r~qP~vLFYEaapk 97 (152)
.-+|+||||++...
T Consensus 465 ~~~~~~~~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 465 DDLSVRHCTNAYMLVYIRESK 485 (522)
T ss_dssp -------CEEEEEEEEEETTS
T ss_pred cccccCcCCceEEEEEEECCc
Confidence 25799999999654
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.10 E-value=2e-10 Score=98.02 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=59.2
Q ss_pred ccceEeccccccccCC------CCCCCCceeEEEEEEeecc----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHH
Q psy13485 12 GGIFENLSDVFHGCDN------AAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSA 81 (152)
Q Consensus 12 L~teLdLs~LF~~vd~------~a~~~t~Y~LvgmVCYyG~----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~ 81 (152)
...+|||+........ .......|.|+|||+|.|. ||+||+.. ..++|+.|||+.|++|. |++|++
T Consensus 387 fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~-~~~~W~~fnD~~V~~v~--~~~v~~- 462 (476)
T 3mhs_A 387 FPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKI-SGGQWFKFNDSMVSSIS--QEEVLK- 462 (476)
T ss_dssp CCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEEC-TTSCEEEEETTEEEEEC--HHHHTT-
T ss_pred CCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCCCCCCceEEEEEC-CCCcEEEEeCCceEECC--HHHhcc-
Confidence 4567888864432211 1122356999999999997 99999963 47899999999999997 899876
Q ss_pred hhcccceeeeeec
Q psy13485 82 FYFFNSEYTLYSA 94 (152)
Q Consensus 82 C~r~qP~vLFYEa 94 (152)
-+|+||||++
T Consensus 463 ---~~aYiLfY~r 472 (476)
T 3mhs_A 463 ---EQAYLLFYTI 472 (476)
T ss_dssp ---SCEEEEEEEE
T ss_pred ---CCcEEEEEEE
Confidence 5899999997
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=98.40 E-value=3.8e-07 Score=85.63 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=45.6
Q ss_pred CceeEEEEEEeecc-----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhhcccceeeeeecCC
Q psy13485 33 PLHQLVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAAP 96 (152)
Q Consensus 33 t~Y~LvgmVCYyG~-----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~r~qP~vLFYEaap 96 (152)
..|+|+||||+.|. ||+||++. .++|+.|||..|.++. ++ .+-.++||||++..
T Consensus 795 ~~Y~L~avi~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~----~~----~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 795 GKYQLFAFISHMGTSTMCGHYVCHIKK--EGRWVIYNDQKVCASE----KP----PKDLGYIYFYQRVA 853 (854)
T ss_dssp SEEEEEEEEEEESSCSSCCEEEEEEEE--TTEEEEEETTEEEECS----SC----CTTSCSEEEEEECC
T ss_pred ceEEEEEEEEeecCCCCCcCeEEEEEe--CCEEEEEECCeeEEcc----cc----CCCcceEEEEEecC
Confidence 46999999999994 99999994 7999999999999985 11 25678999999853
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=96.04 E-value=0.0061 Score=53.50 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=28.9
Q ss_pred CCceeEEEEEEeeccceEEEEEe-eccceEEEEe
Q psy13485 32 TPLHQLVGVVTYYGKHYSTFFFH-TKLKVWIYFD 64 (152)
Q Consensus 32 ~t~Y~LvgmVCYyG~HY~aF~y~-~k~~rWv~fD 64 (152)
+..|.|+||||=.+-||+||+.. .++++|+.||
T Consensus 274 sg~yeL~aVltadsgHYvafVK~~~~d~~W~~FD 307 (374)
T 2vhf_A 274 CQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFD 307 (374)
T ss_dssp -CCEEEEEEEEEETTEEEEEEECSSSTTCEEEEE
T ss_pred ceeEEEEEEEEccCCceEEEEEecCCCCCeEEEe
Confidence 45799999999888899999996 3589999999
No 12
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=55.59 E-value=5.1 Score=32.69 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=19.0
Q ss_pred ccceEEEEEeeccceEEEEe
Q psy13485 45 GKHYSTFFFHTKLKVWIYFD 64 (152)
Q Consensus 45 G~HY~aF~y~~k~~rWv~fD 64 (152)
|.|++||++++...+-++||
T Consensus 52 GvHWiA~Aw~P~s~~~YmFD 71 (204)
T 4ekf_A 52 GVHWMAFAWNPRSKTCYLFE 71 (204)
T ss_dssp CCCEEEEEEETTTTEEEEEC
T ss_pred ceeEEEeEecCCcceEEEeC
Confidence 46999999999999999999
No 13
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=45.77 E-value=9.2 Score=29.84 Aligned_cols=30 Identities=23% Similarity=0.511 Sum_probs=24.8
Q ss_pred EEEEEeeccceEEEEe--CccceeeCCChHHHH
Q psy13485 49 STFFFHTKLKVWIYFD--DATVREVGPRWEQVR 79 (152)
Q Consensus 49 ~aF~y~~k~~rWv~fD--Da~Vk~VG~~W~dVv 79 (152)
=.|+|+.+.+.|+.+. |..+.+-. +|.+|+
T Consensus 112 EGFVynYkt~~W~rYr~g~gg~~~n~-SfSevl 143 (151)
T 3ijm_A 112 EGFVFNYKTQQWLRYRLGDGGVATNS-SFSEVL 143 (151)
T ss_dssp EEEEEETTTTEEEEEETTSTTCCBSC-CEETTT
T ss_pred eeeeEeeccCceeEEEcCCCceeccc-cHHHHh
Confidence 4799999999999999 66666655 898875
No 14
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=30.15 E-value=42 Score=26.76 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=27.9
Q ss_pred eEEEEEEeeccceEEEEEeeccceEEEEeC--ccceeeC
Q psy13485 36 QLVGVVTYYGKHYSTFFFHTKLKVWIYFDD--ATVREVG 72 (152)
Q Consensus 36 ~LvgmVCYyG~HY~aF~y~~k~~rWv~fDD--a~Vk~VG 72 (152)
..+|.||-+.+|.+|.= .-.+.|+.+|. +.=+.||
T Consensus 109 ~~~~FI~N~~~HWfaiR--kigg~WyNLdS~l~~P~~i~ 145 (191)
T 3o65_A 109 NERSFICNYKQHWFTIR--KFGKHWFNLNSLLAGPELIS 145 (191)
T ss_dssp GCCEEEEEESSCEEEEE--EETTEEEECCTTSSSCEEEC
T ss_pred hhhhhhhccccceeeEE--ecCCEEEEccCCCCCCCCcC
Confidence 56899999999999984 47899999995 3445566
Done!