RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13485
(152 letters)
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 45.5 bits (106), Expect = 5e-07
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 25 CDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRS 80
+ + L V +YG HY+ + + + W FDD V ++ + +
Sbjct: 280 VIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSA 339
Query: 81 AFYFF 85
A+ F
Sbjct: 340 AYILF 344
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 43.2 bits (100), Expect = 4e-06
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 31 STPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFF 85
+ ++ L V + G HY+ + W F+D++V + + A+ F
Sbjct: 274 NHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLF 332
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 42.4 bits (98), Expect = 7e-06
Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 6/92 (6%)
Query: 14 IFENLSDVFHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVR 69
E L + L V+ + G HY + W FDD V
Sbjct: 220 FPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVS 279
Query: 70 EVGPRWEQVRSAFYFFNSEYTLYSAAPKASLL 101
E+ Y + + A +L
Sbjct: 280 RC--TKEEAIEHNYGGHDDDLSVRHCTNAYML 309
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 42.0 bits (97), Expect = 8e-06
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 26 DNAAASTPLHQLVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRS 80
D + + + L V+T+ G+ HY + K WI FDD V V E +
Sbjct: 309 DIGSNNCGYYDLQAVLTHQGRSSSSGHY-VSWVKRKQDEWIKFDDDKVSIV--TPEDILR 365
Query: 81 AFYFFNSE 88
+
Sbjct: 366 LSGGGDWH 373
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 41.3 bits (95), Expect = 2e-05
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 14 IFENLSDVFHGCDNAAASTPLHQLVGVVTYYGK-----HYSTF-FFHTKLKVWIYFDDAT 67
+ E + + ++ L+GV+T+ G HY F W F+D
Sbjct: 307 LEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDK 366
Query: 68 VREVGPRWEQVRSAFYFFNSE 88
V V E++ S S+
Sbjct: 367 VSVV--EKEKIESLAGGGESD 385
>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 98
Score = 26.2 bits (58), Expect = 0.77
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 39 GVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVR 79
GKH + IY D + P +E +R
Sbjct: 55 NNKQLTGKHEIEGYTK------IYADKPSAMLYEPDYELIR 89
>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina
mazei [TaxId: 2209]}
Length = 101
Score = 26.2 bits (58), Expect = 1.00
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 39 GVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVR 79
+ T YG S + +Y D +++V + R
Sbjct: 54 RIKTEYGMQESKGYAK------LYEDADRMKQVEQEYVLKR 88
>d2j8ga1 b.109.1.1 (A:191-339) C-terminal domain of endolysin
{Bacteriophage cp-1 [TaxId: 10747]}
Length = 149
Score = 25.6 bits (55), Expect = 2.1
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 43 YYGKHYSTFFFHTKLK-VWIYFDDATVREVGPRWEQVRSAFYFFNS 87
Y + K K W Y + V + + +YF N+
Sbjct: 83 YMDDSGAMVTGWVKYKNNWYYMTNERGNMVSNEFIKSGKGWYFMNT 128
>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus
maripaludis [TaxId: 39152]}
Length = 102
Score = 25.0 bits (55), Expect = 2.3
Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 39 GVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVR 79
+ +GK + + IY D+ + + + +
Sbjct: 54 TLDQIFGKLEAEGYAK------IYNDEKAMATIETKSVLEK 88
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 78
Score = 24.4 bits (53), Expect = 2.8
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 63 FDDATVREVGPRWEQVRSAFY-FFNSEYTLYSAA 95
D T+ + + + Y F +TL A
Sbjct: 25 HDSLTMENIAEQAGVGVATLYRNFPDRFTLDMAC 58
>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid
herpesvirus 4, MuHV-4 [TaxId: 33708]}
Length = 371
Score = 25.4 bits (55), Expect = 3.8
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 109 KLELTRPF-PSFSGCGEVQARPLPAAPTPIL 138
K+ + P+ +F+ CGE+ A +AP P L
Sbjct: 170 KVTVMIPYSSTFTWCGELGAISEESAPQPSL 200
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.459
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 601,064
Number of extensions: 25689
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 13
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.8 bits)