BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13486
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 13 DRNAVGCWNSQYPYK-PENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIH--LESEL 69
D C++ Y+ ++ G+ D E L+ P V D V+ R+ +E++
Sbjct: 135 DSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQD---VLRSRVKTTGIIETQF 191
Query: 70 NFNDVNFRIFTVPLQEAVREQ 90
+F D+NFR+F V Q + R++
Sbjct: 192 SFKDLNFRMFDVGGQRSERKK 212
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 29.3 bits (64), Expect = 0.62, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 13 DRNAVGCWNSQYPYK-PENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIH--LESEL 69
D C++ Y+ ++ G+ D E L+ P V D V+ R+ +E++
Sbjct: 104 DSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQD---VLRSRVKTTGIIETQF 160
Query: 70 NFNDVNFRIFTVPLQEAVREQ 90
+F D+NFR+F V Q + R++
Sbjct: 161 SFKDLNFRMFDVGGQRSERKK 181
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 13 DRNAVGCWNSQYPYK-PENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIH--LESEL 69
D C++ Y+ ++ G+ D E L+ P V D V+ R+ +E++
Sbjct: 103 DSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQD---VLRSRVKTTGIIETQF 159
Query: 70 NFNDVNFRIFTVPLQEAVREQ 90
+F D+NFR+F V Q + R++
Sbjct: 160 SFKDLNFRMFDVGGQRSERKK 180
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 13 DRNAVGCWNSQYPYK-PENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIH--LESEL 69
D C++ Y+ ++ G+ D E L+ P V D V+ R+ +E++
Sbjct: 129 DSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQD---VLRSRVKTTGIIETQF 185
Query: 70 NFNDVNFRIFTVPLQEAVREQ 90
+F D+NFR F V Q + R++
Sbjct: 186 SFKDLNFRXFDVGGQRSERKK 206
>pdb|3Q6K|A Chain A, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6K|B Chain B, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6T|A Chain A, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
pdb|3Q6T|B Chain B, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
Length = 381
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 6 ILYFNLIDRNAVGCWNSQ-YPYKPENIGHIDIDNEALIFPSDVKVVGD-DLWVISDRM-P 62
+++F + V CWN+Q P + +N + + +F +D+ V LW +S+ P
Sbjct: 288 VIFFAEANTKQVSCWNTQKMPLRMKNT-DVVYTSSRFVFGTDISVDSKGGLWFMSNGFPP 346
Query: 63 IHLESELNFNDVNFRIFTV-PLQEAV 87
I + ++ +R+ + QEA+
Sbjct: 347 IRKSEKFKYDFPRYRLMRIMDTQEAI 372
>pdb|3Q6P|A Chain A, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
pdb|3Q6P|B Chain B, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
Length = 381
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 6 ILYFNLIDRNAVGCWNSQ-YPYKPENIGHIDIDNEALIFPSDVKVVGD-DLWVISDRM-P 62
+++F + V CWN+Q P + +N + + +F +D+ V LW S+ P
Sbjct: 288 VIFFAEANTKQVSCWNTQKXPLRXKNT-DVVYTSSRFVFGTDISVDSKGGLWFXSNGFPP 346
Query: 63 IHLESELNFNDVNFRIFTVP-LQEAV 87
I + ++ +R+ + QEA+
Sbjct: 347 IRKSEKFKYDFPRYRLXRIXDTQEAI 372
>pdb|3EE6|A Chain A, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
pdb|3EE6|B Chain B, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
Length = 571
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 46 DVKVVGDDLWVISDRMPI 63
DV + D WV+S+R+PI
Sbjct: 451 DVAALSDGYWVVSNRVPI 468
>pdb|3EDY|A Chain A, Crystal Structure Of The Precursor Form Of Human
Tripeptidyl-Peptidase 1
Length = 544
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 46 DVKVVGDDLWVISDRMPI 63
DV + D WV+S+R+PI
Sbjct: 432 DVAALSDGYWVVSNRVPI 449
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 29 ENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMP 62
E I + I A + P D DLWV S P
Sbjct: 16 EYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETP 49
>pdb|2XHL|B Chain B, Structure Of A Functional Derivative Of Clostridium
Botulinum Neurotoxin Type B
Length = 433
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 27 KPENIGHIDIDNEALIFPSDVKVVGDDL 54
K N+ ID+DNE L F +D DDL
Sbjct: 2 KALNLQCIDVDNEDLFFIADKNSFSDDL 29
>pdb|2FSJ|A Chain A, Crystal Structure Of Ta0583, An Archaeal Actin Homolog,
Native Data
Length = 346
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 34 IDIDNEALIFPSDVKVVGDDLWVISDRMPI 63
I +D + +IFPS V + W I ++P+
Sbjct: 36 IGVDGKRIIFPSRWAVTETESWGIGGKIPV 65
>pdb|2FSK|A Chain A, Crystal Structure Of Ta0583, An Archaeal Actin Homolog,
Semet Data
pdb|2FSK|B Chain B, Crystal Structure Of Ta0583, An Archaeal Actin Homolog,
Semet Data
pdb|2FSN|A Chain A, Crystal Structure Of Ta0583, An Archaeal Actin Homolog,
Complex With Adp
pdb|2FSN|B Chain B, Crystal Structure Of Ta0583, An Archaeal Actin Homolog,
Complex With Adp
Length = 346
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 34 IDIDNEALIFPSDVKVVGDDLWVISDRMPI 63
I +D + +IFPS V + W I ++P+
Sbjct: 36 IGVDGKRIIFPSRWAVTETESWGIGGKIPV 65
>pdb|3IF8|A Chain A, Crystal Structure Of Zwilch, A Member Of The Rzz
Kinetochore
Length = 339
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 36 IDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPLQE 85
I + ++ +DV+V +IS P L++ LN ND+ F + VPL++
Sbjct: 32 IRKDPFLYEADVQV-----QLISKGQPNPLKNILNENDIVFIVEKVPLEK 76
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
Length = 117
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 34 IDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESE 68
+DID + PSD+ V +W+I R I L SE
Sbjct: 42 VDIDKRKYLVPSDI-TVAQFMWIIRKR--IQLPSE 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,902,595
Number of Sequences: 62578
Number of extensions: 111220
Number of successful extensions: 267
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 25
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)