RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13486
         (91 letters)



>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein.  Royal jelly is the
           food of queen bee larvae, and is responsible for the
           high reproductive ability of the queen. Major royal
           jelly proteins make up around 90% of larval jelly
           proteins. This family also the sequence-related yellow
           protein of drosophila which controls pigmentation of the
           adult cuticle and larval mouth parts.
          Length = 285

 Score = 99.3 bits (248), Expect = 4e-27
 Identities = 37/89 (41%), Positives = 62/89 (69%), Gaps = 1/89 (1%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDD-LWVISD 59
           +D NG+L+F L+ +NAVGCWN+  PY   N+G +  +++ L FPSD+K+  ++ LWV+S+
Sbjct: 193 VDPNGVLFFGLVGQNAVGCWNTSTPYSRANLGVVARNSDTLQFPSDLKIDKEEYLWVLSN 252

Query: 60  RMPIHLESELNFNDVNFRIFTVPLQEAVR 88
           RM   L ++L++++VNFRI    +   +R
Sbjct: 253 RMQKFLYNDLDYDEVNFRILGANVDLLIR 281


>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
           [acetolactate synthase, pyruvate dehydrogenase
           (cytochrome), glyoxylate carboligase, phosphonopyruvate
           decarboxylase] [Amino acid transport and metabolism /
           Coenzyme metabolism].
          Length = 550

 Score = 28.0 bits (63), Expect = 0.58
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 8/45 (17%)

Query: 16  AVGCWNSQYP------YKPENIGHIDIDNEAL--IFPSDVKVVGD 52
           AVG               P  I HIDID   +   +P DV +VGD
Sbjct: 272 AVGARFDDRVTGYSGFAPPAAIIHIDIDPAEIGKNYPVDVPIVGD 316


>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A;
           Provisional.
          Length = 395

 Score = 27.6 bits (61), Expect = 0.85
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 26/80 (32%)

Query: 9   FNLIDRNAVGCWNSQYPYKPENIGHIDI---------------DNEALIFPSDVKVVGDD 53
           F  I RN + CW+ +   K   +  + I               D+    F +DVK VGDD
Sbjct: 68  FGRIGRNFLRCWHGR---KDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDD 124

Query: 54  --------LWVISDRMPIHL 65
                   + V+SDR P++L
Sbjct: 125 AISVDGKVIKVVSDRNPLNL 144


>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B.
          Length = 442

 Score = 27.6 bits (61), Expect = 0.85
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 22/78 (28%)

Query: 9   FNLIDRNAVGCWNSQYPYKP------------ENIGH-IDIDNEALIFPSDVKVV----- 50
           F  I RN + CW+ +    P            +N  H +  D+    F +DVK+V     
Sbjct: 83  FGRIGRNFLRCWHGR-KDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETI 141

Query: 51  ---GDDLWVISDRMPIHL 65
              G  + V+S+R P+ L
Sbjct: 142 SVDGKPIKVVSNRDPLKL 159


>gnl|CDD|222357 pfam13742, tRNA_anti_2, OB-fold nucleic acid binding domain.
          This family contains OB-fold domains that bind to
          nucleic acids.
          Length = 97

 Score = 26.0 bits (58), Expect = 1.7
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)

Query: 3  HNGILYFNLIDRNAV---GCWNSQYPY 26
           +G LYF L D++A      W S+   
Sbjct: 36 RSGHLYFELKDKDASIRAVIWRSRARR 62


>gnl|CDD|236275 PRK08486, PRK08486, single-stranded DNA-binding protein;
           Provisional.
          Length = 182

 Score = 25.6 bits (56), Expect = 3.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 21  NSQYPYKPENIGHIDIDNEALIF 43
            +Q P    ++  IDID E + F
Sbjct: 160 QAQPPKYENSVPEIDIDEEEIPF 182


>gnl|CDD|223321 COG0243, BisC, Anaerobic dehydrogenases, typically
           selenocysteine-containing [Energy production and
           conversion].
          Length = 765

 Score = 25.5 bits (56), Expect = 5.1
 Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 4/45 (8%)

Query: 20  WNSQYPYKPENIGHIDIDNEALIFPSDVK----VVGDDLWVISDR 60
            +S        +  I       I P D        GD + V + R
Sbjct: 653 LHSTTYNLRVPLRAIAPRPFVWINPEDAAKLGIKDGDLVRVENRR 697


>gnl|CDD|184548 PRK14165, PRK14165, winged helix-turn-helix domain-containing
           protein/riboflavin kinase; Provisional.
          Length = 217

 Score = 25.0 bits (55), Expect = 6.0
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 9/50 (18%)

Query: 24  YPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFND 73
           YP K E I        A+I P       D + +IS   P++L  ELN  D
Sbjct: 167 YPVKVEGI------ECAVIVPERTHYPSDLIEIIS---PVYLRKELNLKD 207


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.142    0.444 

Gapped
Lambda     K      H
   0.267   0.0817    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,782,921
Number of extensions: 398700
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 11
Length of query: 91
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 33
Effective length of database: 8,365,070
Effective search space: 276047310
Effective search space used: 276047310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.0 bits)