RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13486
(91 letters)
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein,
serotonin, salivary gland, binding, ligand binging
protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis}
PDB: 3q6p_A* 3q6t_A*
Length = 381
Score = 79.4 bits (195), Expect = 3e-19
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 1 MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDD-LWVISD 59
+++F + V CWN+Q + + +F +D+ V LW +S+
Sbjct: 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342
Query: 60 RMPIHLESE-LNFNDVNFRIFTV-PLQEAVR 88
P +SE ++ +R+ + QEA+
Sbjct: 343 GFPPIRKSEKFKYDFPRYRLMRIMDTQEAIA 373
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 51.7 bits (123), Expect = 2e-09
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 1 MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGD-DLWVISD 59
+D + +Y + +A+G S + + + +E L + D L+ +
Sbjct: 255 IDKDHNIYVGDLAHSAIGVITS-----ADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309
Query: 60 RMP--IHLESELNFNDVNFRIFTVPLQEA 86
++ L + N + + IF + A
Sbjct: 310 QLHHSAPLNAGENISAPPYYIFRLKPLAA 338
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 25.6 bits (57), Expect = 2.5
Identities = 7/35 (20%), Positives = 9/35 (25%), Gaps = 14/35 (40%)
Query: 33 HIDIDNEALIFPS--------DVKVVGDDLWVISD 59
I + DV VV D L +
Sbjct: 317 RISPT------VNPIPRVYRPDVDVVTDVLAFVEH 345
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 25.3 bits (56), Expect = 3.3
Identities = 6/43 (13%), Positives = 10/43 (23%), Gaps = 14/43 (32%)
Query: 25 PYKPENIGHIDIDNEALIFPS--------DVKVVGDDLWVISD 59
I H ++ P + V GD +
Sbjct: 387 AEGRGGIIHFEVS------PKNINKVVQTQIAVEGDATTNLGK 423
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 25.3 bits (56), Expect = 4.0
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 33 HIDIDNEAL--IFPSDVKVVGDDLWVISD 59
HIDI+ + + D+ +V D ++
Sbjct: 323 HIDIEPTQIGRVLCPDLGIVSDAKAALTL 351
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 4.3
Identities = 3/17 (17%), Positives = 7/17 (41%), Gaps = 3/17 (17%)
Query: 42 IFPSDVKV---VGDDLW 55
+FP + + +W
Sbjct: 380 VFPPSAHIPTILLSLIW 396
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 24.8 bits (55), Expect = 4.3
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 33 HIDIDNEAL--IFPSDVKVVGD 52
IDID L +D+ V+ D
Sbjct: 304 QIDIDPAKLGKRHKTDIAVLAD 325
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 24.8 bits (55), Expect = 5.3
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 14/37 (37%)
Query: 31 IGHIDIDNEALIFPS--------DVKVVGDDLWVISD 59
I HIDID + V V GD +
Sbjct: 306 IVHIDID------SAEIGKNKTPHVSVCGDVKLALQG 336
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 24.4 bits (54), Expect = 6.5
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 14/37 (37%)
Query: 31 IGHIDIDNEALIFPS--------DVKVVGDDLWVISD 59
H+D D P+ + VV D +
Sbjct: 298 FVHVDTD------PAVLGTFYFPLLSVVADAKTFMEQ 328
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 24.4 bits (54), Expect = 7.6
Identities = 5/37 (13%), Positives = 9/37 (24%), Gaps = 14/37 (37%)
Query: 31 IGHIDIDNEALIFPS--------DVKVVGDDLWVISD 59
+ +D D + +V D I
Sbjct: 298 VIQVDPD------ACELGRLQGIALGIVADVGGTIEA 328
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin,
[2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus
musculus}
Length = 157
Score = 23.8 bits (51), Expect = 9.1
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 46 DVKVVGDDLWVISDRMPIHLES 67
VKV +++V + P +S
Sbjct: 121 TVKVDNGNIYVTLSKEPFKCDS 142
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 24.0 bits (53), Expect = 9.3
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 46 DVKVVGDDLWV 56
+ ++VGDDL V
Sbjct: 321 NFQIVGDDLLV 331
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.142 0.444
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,461,242
Number of extensions: 76174
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 23
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)