RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13486
         (91 letters)



>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
          domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 251

 Score = 23.3 bits (50), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 62 PIHLESELNFNDVNFR 77
          P+HLE  + F DV+F 
Sbjct: 5  PLHLEGLVQFQDVSFA 20


>d1xqma_ d.22.1.1 (A:) GFP-like non-fluorescent chromoprotein
          FP595 {Anemonia sulcata [TaxId: 6108]}
          Length = 230

 Score = 22.7 bits (49), Expect = 9.0
 Identities = 5/23 (21%), Positives = 10/23 (43%)

Query: 56 VISDRMPIHLESELNFNDVNFRI 78
          ++++ MP     E   N   F+ 
Sbjct: 2  LLTETMPFKTTIEGTVNGHCFKC 24


>d1moua_ d.22.1.1 (A:) Pocilloporin pigment Rtms5 {Coral
          (Montipora efflorescens) [TaxId: 105610]}
          Length = 221

 Score = 22.7 bits (49), Expect = 9.3
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 56 VISDRMPIHLESELNFNDVNFRI 78
          VI+ +M   +      N   F +
Sbjct: 3  VIATQMTYKVYMSGTVNGHYFEV 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.142    0.444 

Gapped
Lambda     K      H
   0.267   0.0699    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 368,203
Number of extensions: 15235
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 11
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (21.9 bits)