BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13489
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 102 WQYQLRHERDVTAQFDAIRALERFPXXXXXXXXXXXIESERAYVQVRCKAA 152
+ YQL +++TA +AI E P E + Y+++ C A
Sbjct: 121 YHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIA 171
>pdb|3OE1|A Chain A, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|B Chain B, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|C Chain C, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|D Chain D, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
Length = 568
Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 102 WQYQLRHERDVTAQFDAIRALERFPXXXXXXXXXXXIESERAYVQVRCKAA 152
+ YQL +++TA +AI E P E + Y+++ C A
Sbjct: 121 YHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIA 171
>pdb|2WVA|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 102 WQYQLRHERDVTAQFDAIRALERFPXXXXXXXXXXXIESERAYVQVRCKAA 152
+ YQL +++TA +AI E P E + Y+++ C A
Sbjct: 121 YHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIA 171
>pdb|3Q7Y|A Chain A, Crystal Structure Of Symfoil-4p/pv2: De Novo Designed
Beta-trefoil Architecture With Symmetric Primary
Structure, Primitive Version 2
Length = 132
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 18/66 (27%)
Query: 56 WIRLDPEMTI----------IRSVVIEASDSPVL--------WIRLDPEMTIIRSVVIEQ 97
W+R++P+ T+ I+ + + PVL W+R++P+ T+ +
Sbjct: 18 WLRINPDGTVDGTRDRSDPGIQWQISPDGNGPVLLRSTDTGQWLRINPDGTVDGTRDRSD 77
Query: 98 PDYQWQ 103
P QWQ
Sbjct: 78 PGIQWQ 83
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 18/66 (27%)
Query: 56 WIRLDPEMTI----------IRSVVIEASDSPVL--------WIRLDPEMTIIRSVVIEQ 97
W+R++P+ T+ I+ + + PVL W+R++P+ T+ +
Sbjct: 60 WLRINPDGTVDGTRDRSDPGIQWQISPDGNGPVLLRSTDTGQWLRINPDGTVDGTRDRSD 119
Query: 98 PDYQWQ 103
P QWQ
Sbjct: 120 PGIQWQ 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,733,753
Number of Sequences: 62578
Number of extensions: 103701
Number of successful extensions: 223
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 7
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)