BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13489
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24325|TAF2_DROME Transcription initiation factor TFIID subunit 2 OS=Drosophila
melanogaster GN=Taf2 PE=1 SV=2
Length = 1221
Score = 147 bits (370), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 78/89 (87%)
Query: 75 DSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLAL 134
DSPVLWIRLDPEM ++R ++IEQPD+QWQYQLRHERDVTAQF AI+AL+++PT TRLAL
Sbjct: 625 DSPVLWIRLDPEMILLRDLIIEQPDFQWQYQLRHERDVTAQFQAIQALQKYPTNATRLAL 684
Query: 135 TDTIESERAYVQVRCKAAQALTKVKEILV 163
TDTIESER + QVRC+AA +LTKV +V
Sbjct: 685 TDTIESERCFYQVRCEAAHSLTKVANQMV 713
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 29/32 (90%)
Query: 1 MSPQYLDIMRKKAHLMIRMLEHRIGFELILQL 32
+SP+Y++ MR+KAH +IRMLE+RIG EL++Q+
Sbjct: 444 VSPKYVEAMRRKAHFVIRMLENRIGQELLIQV 475
>sp|Q5ZIT8|TAF2_CHICK Transcription initiation factor TFIID subunit 2 OS=Gallus gallus
GN=TAF2 PE=2 SV=1
Length = 1168
Score = 110 bits (275), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/90 (54%), Positives = 67/90 (74%)
Query: 74 SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLA 133
+DSP+LWIR+DP+M+++R V EQ D+ WQYQLR+ERDV AQ +AI ALE+FPT +RLA
Sbjct: 611 ADSPLLWIRIDPDMSVLRKVEFEQSDFMWQYQLRYERDVVAQEEAILALEKFPTPASRLA 670
Query: 134 LTDTIESERAYVQVRCKAAQALTKVKEILV 163
LTD +E E+ + +VR A L K+ +V
Sbjct: 671 LTDILEQEQCFYRVRMLACFCLAKIANSMV 700
Score = 33.1 bits (74), Expect = 0.99, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 1 MSPQYLDIMRKKAHLMIRMLEHRIGFELILQL 32
+S +Y + + KAHL++R++E+RI E +LQ+
Sbjct: 431 LSWEYYTMFQCKAHLVMRLIENRISMEFMLQV 462
>sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens
GN=TAF2 PE=1 SV=3
Length = 1199
Score = 110 bits (274), Expect = 6e-24, Method: Composition-based stats.
Identities = 48/90 (53%), Positives = 67/90 (74%)
Query: 74 SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLA 133
+DSP+LWIR+DP+M+++R V EQ D+ WQYQLR+ERDV AQ ++I ALE+FPT +RLA
Sbjct: 621 ADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQESILALEKFPTPASRLA 680
Query: 134 LTDTIESERAYVQVRCKAAQALTKVKEILV 163
LTD +E E+ + +VR A L K+ +V
Sbjct: 681 LTDILEQEQCFYRVRMSACFCLAKIANSMV 710
Score = 33.1 bits (74), Expect = 0.80, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 1 MSPQYLDIMRKKAHLMIRMLEHRIGFELILQL 32
+S +Y + + KAHL++R++E+RI E +LQ+
Sbjct: 441 LSWEYYSMFQCKAHLVMRLIENRISMEFMLQV 472
>sp|Q8C176|TAF2_MOUSE Transcription initiation factor TFIID subunit 2 OS=Mus musculus
GN=Taf2 PE=2 SV=2
Length = 1104
Score = 108 bits (271), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/90 (52%), Positives = 67/90 (74%)
Query: 74 SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLA 133
+DSP+LWIR+DP+M+++R V EQ D+ WQY+LR+ERDV AQ ++I ALE+FPT +RLA
Sbjct: 611 ADSPLLWIRIDPDMSVLRKVEFEQADFMWQYELRYERDVVAQQESILALEKFPTPASRLA 670
Query: 134 LTDTIESERAYVQVRCKAAQALTKVKEILV 163
LTD +E E+ + +VR A L K+ +V
Sbjct: 671 LTDILEQEQCFYRVRMSACFCLAKIANSMV 700
Score = 33.1 bits (74), Expect = 0.99, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 1 MSPQYLDIMRKKAHLMIRMLEHRIGFELILQL 32
+S +Y + + KAHL++R++E+RI E +LQ+
Sbjct: 431 LSWEYYTMFQCKAHLVMRLIENRISMEFMLQV 462
>sp|Q32PW3|TAF2_DANRE Transcription initiation factor TFIID subunit 2 OS=Danio rerio
GN=taf2 PE=2 SV=2
Length = 1191
Score = 106 bits (264), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 66/90 (73%)
Query: 74 SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLA 133
+DSP+LWIR+DP+M+I+R V EQ D+ WQYQLR+ERDV AQ +AI ALE+FPT +R A
Sbjct: 610 ADSPLLWIRIDPDMSILRKVEFEQADFMWQYQLRYERDVVAQEEAILALEKFPTPPSRRA 669
Query: 134 LTDTIESERAYVQVRCKAAQALTKVKEILV 163
LTD +E ++ + +VR A L K+ +V
Sbjct: 670 LTDILEQDQCFYKVRMHACFCLAKIANSMV 699
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 1 MSPQYLDIMRKKAHLMIRMLEHRIGFELILQL 32
+S +Y + + KAHL++R++E+RI E +LQ+
Sbjct: 430 LSWEYYKMFQCKAHLVMRLIENRISMEFMLQV 461
>sp|P23255|TAF2_YEAST Transcription initiation factor TFIID subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF2 PE=1
SV=3
Length = 1407
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 80 WIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALER------FPTTTTRLA 133
WIR+D ++ I + I QPDY + QLR + D+ AQ +AIR E +
Sbjct: 842 WIRIDSDLEWICQMHINQPDYMFSSQLRQDGDIEAQLEAIRYYEDVVVNGGVKSLVYSSI 901
Query: 134 LTDTIESERAYVQVRCKAAQALTK 157
L T ER + +R A +AL+K
Sbjct: 902 LFRTAIDERYFFGIRLAACEALSK 925
>sp|P87121|TAF2_SCHPO Transcription initiation factor TFIID subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf2 PE=3 SV=3
Length = 1172
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 80 WIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTR---LALTD 136
WIR+D + I + + QP++ + QL+ +RDV AQ + IR T ++ L
Sbjct: 699 WIRVDADFEWICDLRVRQPEHMYVSQLQQDRDVVAQLETIRHFTSESFTVSQQVSTVLLR 758
Query: 137 TIESERAYVQVRCKAAQALTKV 158
T+ R Y +R +AA+AL +
Sbjct: 759 TLLDNRYYYGIRQEAARALARC 780
>sp|P21341|PAIB_BACSU Protease synthase and sporulation protein PAI 2 OS=Bacillus
subtilis (strain 168) GN=paiB PE=1 SV=3
Length = 207
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 58 RLDPEMTIIRSVVIEASDSPVLWIRLDP-----EMTIIRSVVIEQPDYQWQYQLRHERDV 112
L E+TI+ + D+PVLW +L P E+ I I+ D Q Y+L R+
Sbjct: 115 ELAEELTIMLEKYEKHRDNPVLWDKLSPKLLESELKGIVGFKIKVEDIQAAYKLSQNRNE 174
Query: 113 TAQFDAIRALER 124
T + I L+
Sbjct: 175 TDYMNVIEQLQN 186
>sp|Q7NHZ4|HISZ_GLOVI ATP phosphoribosyltransferase regulatory subunit OS=Gloeobacter
violaceus (strain PCC 7421) GN=hisZ PE=3 SV=1
Length = 392
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 55 LWIRLDPEMTIIRSVVIEASDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTA 114
L +R DP ++ R+V +D+P L +RL +M + RS Q YQ +L V A
Sbjct: 71 LGLRPDPTPSLARAVATRLADAP-LPVRLSYQMNVFRSTTQPQEFYQAGVELIGAGGVLA 129
Query: 115 QFDAIRAL 122
+ + L
Sbjct: 130 DAEVLLVL 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,183,153
Number of Sequences: 539616
Number of extensions: 2230950
Number of successful extensions: 5305
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5284
Number of HSP's gapped (non-prelim): 26
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)