RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13489
(172 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 5e-05
Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 37/183 (20%)
Query: 14 HLMIRMLEHRIGFELILQLRLPRPVDSVGSGDDYYSSDSP--VLWIRLDPEMTIIRSVVI 71
H+ EH+ ++ IL + VD+ D D P +L E I +++
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNF---DCKDVQDMPKSIL---SKEE---IDHIIM 56
Query: 72 EASDSP----VLWIRLDPEMTIIRSVVIE--QPDYQW-----QYQLRHERDVTAQFDAIR 120
+ W L + +++ V E + +Y++ + + R +T + I
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY--IE 114
Query: 121 ALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKEILVF-----------AVALR 169
+R A + + Y+++R +A L K +L+
Sbjct: 115 QRDRLYNDNQVFA-KYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 170 SAK 172
S K
Sbjct: 173 SYK 175
Score = 36.0 bits (82), Expect = 0.004
Identities = 42/209 (20%), Positives = 71/209 (33%), Gaps = 67/209 (32%)
Query: 3 PQYLDIMRKKAHLMIRMLEHRIGFELILQLRLPRPVDSV------GSG---------DDY 47
+Y ++ R + +L +R + +L+LR P +V GSG Y
Sbjct: 127 AKY-NVSRLQPYLKLR--------QALLELR---PAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 48 ---YSSDSPVLWIRL----DPEMTIIRSVVIEASDSPVLWIRLDPEMTII--RSVVIEQP 98
D + W+ L PE V+E L ++DP T S I+
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPE------TVLEMLQK--LLYQIDPNWTSRSDHSSNIKLR 226
Query: 99 DYQWQYQLR-------HER------DVTAQFDAIRALERFPTT-----TTR-LALTDTIE 139
+ Q +LR +E +V +A +A F + TTR +TD +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNV---QNA-KAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 140 SERAYVQVRCKAAQALTKVKEILVFAVAL 168
+ + LT + + L
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYL 311
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.001
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 29/150 (19%)
Query: 20 LEHRI-----GFELILQLR------LPRPVDSVGSGDDYYSSDSPV-LWIRLDPEMTIIR 67
LEH + F + QL+ LP P + + D+ +P L + + +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE---PTTPAELVGKF---LGYVS 69
Query: 68 SVVIEASDS---PVLWIRLDP-EMTIIR-----SVVIEQPDYQWQYQLRHERDVTAQFDA 118
S+V + VL + L E + ++ + ++ + + A
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 119 IRALERFPTTTTRLALTDTIESERA--YVQ 146
+R + AL + A
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Score = 27.3 bits (60), Expect = 3.1
Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 49/141 (34%)
Query: 25 GFELILQLRLP--RPVDSVGSGDDYYSSDSPVLW--IRL---------------DPE--M 63
G ++ L P P D Y P+ I + P
Sbjct: 212 GLNILEWLENPSNTP-------DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 64 TIIRSVVIEASDSPVLWIRLDPEMTIIRSVVIEQPDYQWQ--YQLRHERDVTAQFDAI-- 119
+ ++ + ++ +V I + D W+ + + +T F I
Sbjct: 265 SYLKGATGHSQG-------------LVTAVAIAETD-SWESFFVSVR-KAITVLF-FIGV 308
Query: 120 RALERFPTTTTRLA-LTDTIE 139
R E +P T+ + L D++E
Sbjct: 309 RCYEAYPNTSLPPSILEDSLE 329
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.10
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 25/53 (47%)
Query: 11 KKAHLMIRMLEHRIGFELILQLRLPRPVDSVGSGDDYYSSDS-PVLWIRLDPE 62
K+A ++ L+ L+L Y+ DS P L I+ E
Sbjct: 19 KQA---LKKLQAS--------LKL-------------YADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 0.31
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
Query: 118 AIRALE-RF----PTTTTRLALTDTIE 139
A++ L+ + LA+ T+E
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 30.1 bits (67), Expect = 0.19
Identities = 9/52 (17%), Positives = 15/52 (28%)
Query: 99 DYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCK 150
+QYQL R T + R + + V++R
Sbjct: 48 YLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPSSEPRAKHSVKIRAA 99
>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA,
seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A
{Staphylococcus aureus} SCOP: d.174.1.1
Length = 347
Score = 27.1 bits (60), Expect = 2.7
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 69 VVIEASDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLR 107
++ + + V + +I+ V IE Y +L
Sbjct: 161 LIYQLPNESVKFYEYPTS--LIKEVPIEHNHYPKLRKLN 197
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 27.0 bits (59), Expect = 2.7
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 10/103 (9%)
Query: 49 SSDSPVLWIRLDPEMTIIRSVVIEASDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRH 108
S DSP + V S I ++ + I P+ Q+Q+R+
Sbjct: 94 SLDSPPTCV------LPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENNLQFQIRY 147
Query: 109 ERDVTAQFDAIRALERFPTTTTRLALTDTIESERAY-VQVRCK 150
+ E + + ++L + Y VQVRCK
Sbjct: 148 GLSGKEVQWKM--YEVYDAKSKSVSLPV-PDLCAVYAVQVRCK 187
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase;
HET: PE5; 1.93A {Bacillus subtilis}
Length = 527
Score = 27.1 bits (59), Expect = 3.1
Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 15/81 (18%)
Query: 40 SVGSGDDYYSSDSPVLWIRLDPEMTIIRSVVIEASDSPVLW-IRLDPEMT-IIRSVVIEQ 97
V SGD SDS VLW RL P+ + PV W + D I+R
Sbjct: 12 GVASGDPL--SDSVVLWTRLAPDPLNGGGM--PKQAVPVKWEVAKDEHFRKIVRKGTE-- 65
Query: 98 PDYQWQYQLRHERDVTAQFDA 118
+ + +A
Sbjct: 66 -------MAKPSLAHSVHVEA 79
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 26.7 bits (58), Expect = 3.8
Identities = 6/53 (11%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 98 PDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCK 150
++ ++ +++ D + E+ + +L +R +VR +
Sbjct: 162 LNHCLEHLVQYRTDWDHSWT-----EQSVDYRHKFSLPSVDGQKRYTFRVRSR 209
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 26.6 bits (58), Expect = 4.1
Identities = 6/53 (11%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 98 PDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCK 150
++ ++ +++ D + E+ + +L +R +VR +
Sbjct: 124 LNHCLEHLVQYRTDWDHSW-----TEQSVDYRHKFSLPSVDGQKRYTFRVRSR 171
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 25.3 bits (55), Expect = 6.2
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 100 YQWQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCK 150
+ ++ LR+ + Q+ + + T +TD + +QV K
Sbjct: 42 FPLKFFLRYRPLILDQWQHV-----ELSNGTAHTITDAYAGKEYIIQVAAK 87
>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET:
ARG HEM; 3.20A {Geobacillus stearothermophilus}
Length = 375
Score = 26.0 bits (57), Expect = 8.3
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 69 VVIEASDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLR 107
+VI+ +W + E ++ V IE P++ W L+
Sbjct: 178 LVIQVGGQKPVWTPIPKE--LVLEVPIEHPEFPWFRDLQ 214
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 25.6 bits (55), Expect = 8.8
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 12/113 (10%)
Query: 38 VDSVGSGDDYYSSDSPVLWIRLDPEMTIIRSVVIEASDSPVLWIRLDPEMTIIRSVVIEQ 97
SVGS + ++ DP I +V A + L + + S +
Sbjct: 176 ASSVGSKFSKTQTFQGCGILQPDPPANI--TVTAVARNPRWLSVTWQDPHSWNSSFYRLR 233
Query: 98 PDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCK 150
++ +Y+ + T + D R VQ+R +
Sbjct: 234 --FELRYRAERSKTFTTWMV--------KDLQHHCVIHDAWSGLRHVVQLRAQ 276
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 25.6 bits (55), Expect = 9.7
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 103 QYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAA 152
+Y +++ + + I E +T + + D ++RC
Sbjct: 234 KYNIQYRTKDASTWSQIP-PEDTASTRSSFTVQDLKPFTEYVFRIRCMKE 282
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.395
Gapped
Lambda K H
0.267 0.0532 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,774,561
Number of extensions: 164192
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 32
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.0 bits)