BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13490
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NIV|A Chain A, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
pdb|3NIV|B Chain B, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
pdb|3NIV|C Chain C, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
pdb|3NIV|D Chain D, The Crystal Structure Of Glutathione S-Transferase From
Legionella Pneumophila
Length = 222
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 17 VCFFPHNIQILGGHRIPFDIYVDPFMHEVTHFCL 50
VC P Q+ HR FD P ++E+ +CL
Sbjct: 169 VCLIP---QVYNAHRFHFDXASYPIINEINEYCL 199
>pdb|3OFM|A Chain A, Structure Of A Human Ck2alpha Prime, The Paralog Isoform
Of The Catalytic Subunit Of Protein Kinase Ck2 From Homo
Sapiens
Length = 350
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 21 PHNIQILGGHRIPFDIYVDPFMH-EVTHFCLPPLKDLLKVSVRHVHQMFEFFEETLSNRY 79
PH ILG H + F+H E H P DLL +R+ HQ +E + + Y
Sbjct: 268 PHFNDILGQHSRK---RWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPY 324
Query: 80 PYPCYKQ 86
YP K+
Sbjct: 325 FYPVVKE 331
>pdb|2XQ2|B Chain B, Structure Of The K294a Mutant Of Vsglt
Length = 593
Score = 26.6 bits (57), Expect = 4.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 87 VFVDSTVTDVTAYASMSILSSDSPVLWIRLDPEMTII 123
+FV ++ AY M +L+ + W+ D E+T+I
Sbjct: 517 MFVTDRSFNIAAYGIMIVLAVLYTLFWVNADAEITLI 553
>pdb|2XQ2|A Chain A, Structure Of The K294a Mutant Of Vsglt
Length = 593
Score = 26.6 bits (57), Expect = 4.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 87 VFVDSTVTDVTAYASMSILSSDSPVLWIRLDPEMTII 123
+FV ++ AY M +L+ + W+ D E+T+I
Sbjct: 517 MFVTDRSFNIAAYGIMIVLAVLYTLFWVNADAEITLI 553
>pdb|3E3B|X Chain X, Crystal Structure Of Catalytic Subunit Of Human Protein
Kinase Ck2alpha Prime With A Potent Indazole-Derivative
Inhibitor
Length = 339
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 21 PHNIQILGGHRIPFDIYVDPFMH-EVTHFCLPPLKDLLKVSVRHVHQMFEFFEETLSNRY 79
PH ILG H + F+H E H P DLL +R+ HQ +E + + Y
Sbjct: 273 PHFNDILGQHSRK---RWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPY 329
Query: 80 PYPCYKQ 86
YP K+
Sbjct: 330 FYPVVKE 336
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Bet1
pdb|1PD0|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Sed5
(Yeast Syntaxin-5)
pdb|1PD1|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide Containing The Dxe Cargo
Sorting Signal Of Yeast Sys1 Protein
Length = 810
Score = 26.2 bits (56), Expect = 6.4, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 21 PHNIQILGGHRIPFDIYVDPFMHEVTHFCLPPLKD 55
P N +L ++PF + + P+ H PPL +
Sbjct: 74 PKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNE 108
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 21 PHNIQILGGHRIPFDIYVDPFMHEVTHFCLPPL-KDLLKVSVRH 63
P N +L ++PF + + P+ H PPL +D L V R
Sbjct: 190 PKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRR 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,311,231
Number of Sequences: 62578
Number of extensions: 156075
Number of successful extensions: 384
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 24
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)