BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13490
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24325|TAF2_DROME Transcription initiation factor TFIID subunit 2 OS=Drosophila
melanogaster GN=Taf2 PE=1 SV=2
Length = 1221
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 65/84 (77%), Gaps = 3/84 (3%)
Query: 23 NIQILGGHRIPFDIYVDPFMHEVTHFCLPPLKDLLKVSVRHVHQMFEFFEETLSNRYPYP 82
NI + G F+IYVDP MHEVTHFCLP L LLK +VR++H+ FEF+EETLS RYP+
Sbjct: 238 NIALAVGQ---FEIYVDPHMHEVTHFCLPGLLPLLKNTVRYLHEAFEFYEETLSTRYPFS 294
Query: 83 CYKQVFVDSTVTDVTAYASMSILS 106
CYKQVFVD TD++AYA+MSI S
Sbjct: 295 CYKQVFVDELDTDISAYATMSIAS 318
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 27/30 (90%)
Query: 108 DSPVLWIRLDPEMTIIRSVVIEQPDYQWHF 137
DSPVLWIRLDPEM ++R ++IEQPD+QW +
Sbjct: 625 DSPVLWIRLDPEMILLRDLIIEQPDFQWQY 654
>sp|Q8C176|TAF2_MOUSE Transcription initiation factor TFIID subunit 2 OS=Mus musculus
GN=Taf2 PE=2 SV=2
Length = 1104
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 3/86 (3%)
Query: 23 NIQILGGHRIPFDIYVDPFMHEVTHFCLPPLKDLLKVSVRHVHQMFEFFEETLSNRYPYP 82
NI + G PF+I VDP+MHEVTHFCLP L LLK + ++H++FEF+EE L+ RYPY
Sbjct: 236 NISLAIG---PFEILVDPYMHEVTHFCLPQLLPLLKHTTSYIHEVFEFYEEILTCRYPYS 292
Query: 83 CYKQVFVDSTVTDVTAYASMSILSSD 108
C+K VF+D +V AYASMSI S++
Sbjct: 293 CFKTVFIDEAYVEVAAYASMSIFSTN 318
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 102 MSILSSDSPVLWIRLDPEMTIIRSVVIEQPDYQWHF 137
+S + +DSP+LWIR+DP+M+++R V EQ D+ W +
Sbjct: 606 LSAMEADSPLLWIRIDPDMSVLRKVEFEQADFMWQY 641
>sp|Q5ZIT8|TAF2_CHICK Transcription initiation factor TFIID subunit 2 OS=Gallus gallus
GN=TAF2 PE=2 SV=1
Length = 1168
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 3/86 (3%)
Query: 23 NIQILGGHRIPFDIYVDPFMHEVTHFCLPPLKDLLKVSVRHVHQMFEFFEETLSNRYPYP 82
NI + G PF+I VDP+MHEVTHFCLP L LLK + ++H++FEF+EE L+ RYPY
Sbjct: 236 NISLAIG---PFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYPYS 292
Query: 83 CYKQVFVDSTVTDVTAYASMSILSSD 108
C+K VF+D +V AYASMSI S++
Sbjct: 293 CFKTVFIDEAYVEVAAYASMSIFSTN 318
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 102 MSILSSDSPVLWIRLDPEMTIIRSVVIEQPDYQWHF 137
+S + +DSP+LWIR+DP+M+++R V EQ D+ W +
Sbjct: 606 LSAMDADSPLLWIRIDPDMSVLRKVEFEQSDFMWQY 641
>sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens
GN=TAF2 PE=1 SV=3
Length = 1199
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 3/86 (3%)
Query: 23 NIQILGGHRIPFDIYVDPFMHEVTHFCLPPLKDLLKVSVRHVHQMFEFFEETLSNRYPYP 82
NI + G PF+I VDP+MHEVTHFCLP L LLK + ++H++FEF+EE L+ RYPY
Sbjct: 246 NISLAIG---PFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYPYS 302
Query: 83 CYKQVFVDSTVTDVTAYASMSILSSD 108
C+K VF+D +V AYASMSI S++
Sbjct: 303 CFKTVFIDEAYVEVAAYASMSIFSTN 328
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 102 MSILSSDSPVLWIRLDPEMTIIRSVVIEQPDYQWHF 137
+S + +DSP+LWIR+DP+M+++R V EQ D+ W +
Sbjct: 616 LSAMDADSPLLWIRIDPDMSVLRKVEFEQADFMWQY 651
>sp|Q32PW3|TAF2_DANRE Transcription initiation factor TFIID subunit 2 OS=Danio rerio
GN=taf2 PE=2 SV=2
Length = 1191
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 64/86 (74%), Gaps = 3/86 (3%)
Query: 23 NIQILGGHRIPFDIYVDPFMHEVTHFCLPPLKDLLKVSVRHVHQMFEFFEETLSNRYPYP 82
NI + G PF+I VDP+MHEVTHFCLP L LLK ++ ++H++FEF+EE L+ RYPY
Sbjct: 235 NISMAVG---PFEILVDPYMHEVTHFCLPQLLPLLKHTMSYLHEIFEFYEEILTCRYPYS 291
Query: 83 CYKQVFVDSTVTDVTAYASMSILSSD 108
C+K VFVD V++YASMSI S++
Sbjct: 292 CFKTVFVDEAYVQVSSYASMSIFSTN 317
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 102 MSILSSDSPVLWIRLDPEMTIIRSVVIEQPDYQWHF 137
+S + +DSP+LWIR+DP+M+I+R V EQ D+ W +
Sbjct: 605 LSAMDADSPLLWIRIDPDMSILRKVEFEQADFMWQY 640
>sp|Q11010|AMPN_STRLI Aminopeptidase N OS=Streptomyces lividans GN=pepN PE=1 SV=1
Length = 857
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 22 HNIQILGGHRIPFDIYVDPFMHEVTHFCLPPLKDLLKVSVRHVHQMFEFFEETLSNRYPY 81
H++ G +P IY P + E H + ++ + Q F++F+E YP+
Sbjct: 200 HSVYEKDGQSVPLGIYCRPSLAE--HLDADAIFEVTR-------QGFDWFQEKFDYAYPF 250
Query: 82 PCYKQVFV 89
Y Q+FV
Sbjct: 251 KKYDQLFV 258
>sp|A8EWN0|DXS_ARCB4 1-deoxy-D-xylulose-5-phosphate synthase OS=Arcobacter butzleri
(strain RM4018) GN=dxs PE=3 SV=1
Length = 601
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 27 LGGHRIPFDIYVDPFMHEVTHFCLP 51
LG H + FD Y DPF+ +V+H C P
Sbjct: 44 LGMHYV-FDAYSDPFIFDVSHQCYP 67
>sp|Q8TCU4|ALMS1_HUMAN Alstrom syndrome protein 1 OS=Homo sapiens GN=ALMS1 PE=1 SV=3
Length = 4167
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 3 KLKANPKFQHSDHQVCFFPHNIQILGGHRIPFDIYVDPFMHEVTHFCLPPLKDL 56
+LK++ FQ+ F P +I G R+PFD +DP++ E+ P K++
Sbjct: 2646 QLKSHSPFQN------FIPDEFKISKGLRMPFDEKMDPWLSELVEPAFVPPKEV 2693
>sp|A7NLR3|CAPP_ROSCS Phosphoenolpyruvate carboxylase OS=Roseiflexus castenholzii (strain
DSM 13941 / HLO8) GN=ppc PE=3 SV=1
Length = 938
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 52 PLKDLLKVSVRHVHQMFEFFEETLSNRYPYPCYKQ--VFVDSTVTDVTAYASMSILS--- 106
P+ D L+ S+ H +F + L+ R PY Y+Q ++ + YA + L
Sbjct: 310 PVSDELRESLAHDASLFPEVADMLARRNPYELYRQKCTYIREKLIRTLDYARTASLDWGR 369
Query: 107 SDSP 110
SDSP
Sbjct: 370 SDSP 373
>sp|A9QC40|MATK_TRACE Maturase K OS=Trachelium caeruleum GN=matK PE=3 SV=1
Length = 514
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 32 IPFDIYVDPFMHEVTHFCLPPLK--DLLKVSVRHVHQMFEFFEETLSNRY-------PYP 82
IPF + + ++ + +K +L +++R +H +F F E+ +S+ Y PYP
Sbjct: 104 IPFSLRLLSWLEKFEKTGTGRVKSDNLRSINLRSIHSIFSFLEDKISHLYYVLDILIPYP 163
Query: 83 CYKQVFVDS 91
+ ++ V +
Sbjct: 164 IHLEILVQA 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,951,122
Number of Sequences: 539616
Number of extensions: 1902674
Number of successful extensions: 4796
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4779
Number of HSP's gapped (non-prelim): 31
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)