RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13490
(138 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 5e-04
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 20/92 (21%)
Query: 63 HVHQM-FEFFEETLSNRYPYPCYKQVFV-DSTVTDVTAYASMSILSSD-------SP--- 110
H H M FE E + ++ FV + DV SILS + S
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAV 61
Query: 111 -----VLWIRLDPEMTIIRSVVIE--QPDYQW 135
+ W L + +++ V E + +Y++
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Score = 32.5 bits (73), Expect = 0.032
Identities = 14/116 (12%), Positives = 42/116 (36%), Gaps = 29/116 (25%)
Query: 48 FCLPPLKDLLKVSVRHVHQMFEFFEETLS--NRYPYPCYKQV--FVDSTVTDVTA----- 98
LP ++L + R + + E + L+ + + + ++ ++S++ +
Sbjct: 316 QDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 99 -YASMSILSSDSPV-------LWIRLDPE--MTII-----RSVVIEQPD---YQWH 136
+ +S+ + + +W + M ++ S+V +QP
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 34.9 bits (80), Expect = 0.006
Identities = 11/97 (11%), Positives = 24/97 (24%), Gaps = 15/97 (15%)
Query: 29 GHRIPFDIYVDPFMHEVTHFCLPPLKDLLKVSVRHVHQMFEFFEETLSNRYPYPCYKQVF 88
G + + Y F + LK+ ++ E Y + V
Sbjct: 202 GRNVKIEFYTTEADKPKVGFAVESLKN-----------AMKWDETRFGLEYDLDIFMVVA 250
Query: 89 VDSTVTDVTAYASMSILSSDSPVLWIRLDPEMTIIRS 125
V ++I ++ ++ D
Sbjct: 251 VGDFNMGAMENKGLNIFNTK----FVLADSRTATDTD 283
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 34.5 bits (79), Expect = 0.008
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 11/64 (17%)
Query: 29 GHRIPFDIYVDPFMHEVTHFCLPPLKDLLKVSVRHVHQMFEFFEETLSNRYPYPCYKQVF 88
G + ++YVD + + + + ++ EE Y Y V
Sbjct: 227 GREVALELYVDRGNLDRAPWAM-----------TSLKNSMKWDEERFGLEYDLDIYMIVA 275
Query: 89 VDST 92
VD
Sbjct: 276 VDFF 279
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Length = 108
Score = 27.4 bits (60), Expect = 0.82
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 70 FFEETLSNRYPYPCYKQVFVDSTVTDVTAYASMSILSSDSPVLWIRLD 117
+ + ++PYP + V V +Y + S LW+ L+
Sbjct: 47 GLQMFIQRKFPYPLQWSLLVAVVAGSVVSYGVTRVESEKCNNLWLFLE 94
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium
channel domain T1, pentameric assembly, HOST-virus
interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Length = 202
Score = 27.2 bits (60), Expect = 1.4
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 32 IPFDIYVDPFMHEVTHFCLPPLKDLLK------------VSVRHVHQMFEFFEETLSNRY 79
I D+ + + E + + L L+K V V+HV+++ + EE L+
Sbjct: 81 INKDLAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMV 140
Query: 80 PYPCYKQVF 88
F
Sbjct: 141 STMSDGWKF 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 2.4
Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 38/108 (35%)
Query: 41 FMHEVTHFCLP----PLKDLLKVSVRHVHQMFEFFEET-LSNRYPYPCYKQVFVDSTVTD 95
F+ V+ P +L + + FE L D
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTE-------FENCYLEG----------------ND 100
Query: 96 VTAYASMSILSSDSPVLWIRLDPEMTIIRS-----VVIEQPDYQWHFS 138
+ A A+ + +D+ ++ + +I++ ++ ++P + S
Sbjct: 101 IHALAAKLLQENDTTLVKTK-----ELIKNYITARIMAKRPFDKKSNS 143
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 26.8 bits (59), Expect = 2.8
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 11/62 (17%)
Query: 29 GHRIPFDIYVDPFMHEVTHFCLPPLKDLLKVSVRHVHQMFEFFEETLSNRYPYPCYKQVF 88
++ ++ + + L + LK S+ F E+ Y V
Sbjct: 210 KKKVELYVFSEEKYVSKLQWAL----ECLKKSMA-------FDEDYFGLEYDLSRLNLVA 258
Query: 89 VD 90
V
Sbjct: 259 VS 260
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG;
2.37A {Trichoderma reesei} SCOP: a.102.2.1
Length = 503
Score = 26.4 bits (58), Expect = 3.2
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 13 SDHQVCFFPHNIQILGGHRIPFDIYVDPFMHEVTHFC 49
S H F ILGG + Y+D + ++
Sbjct: 305 SGHLASFGG-GNFILGGILLNEQKYIDFGI-KLASSY 339
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB,
sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio
parahaemolyticus}
Length = 450
Score = 26.4 bits (58), Expect = 3.8
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 6/51 (11%)
Query: 3 KLKANPKFQHS------DHQVCFFPHNIQILGGHRIPFDIYVDPFMHEVTH 47
K K + + + DH F N+ + IP I
Sbjct: 288 KAKKSSYWDDTIFIVIADHDARVFGANLVPVKHFHIPALIIGKDIQPRKDD 338
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain
T1, pentamer, unkno function; 1.90A {Homo sapiens}
Length = 107
Score = 25.0 bits (55), Expect = 5.6
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 32 IPFDIYVDPFMHEVTHFCLPPLKDLLK 58
I D+ + + E + + L L+K
Sbjct: 75 INKDLAEEGVLEEAEFYNITSLIKLVK 101
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate
ligase; peptidoglycan biosynthesis; HET: KCX UAG API;
2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 498
Score = 25.6 bits (57), Expect = 6.2
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 25 QILGGHRIPFD 35
QI+G R+ +
Sbjct: 471 QIVGNQRLDYS 481
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate
ligase; nucleotide-binding, peptidoglycan synthesis,
MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium
tuberculosis} PDB: 2xja_A*
Length = 535
Score = 25.7 bits (57), Expect = 6.6
Identities = 6/11 (54%), Positives = 6/11 (54%)
Query: 25 QILGGHRIPFD 35
Q GG PFD
Sbjct: 509 QRGGGRVRPFD 519
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 24.6 bits (54), Expect = 7.6
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 91 STVTDVTAYASMSILSSDSPVL 112
S + D+T A M+ S +
Sbjct: 2 SAIRDITTEAGMAHFEGLSDAI 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.457
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,201,671
Number of extensions: 116893
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 24
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.0 bits)