BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13491
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVS 53
+ ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG PR R R R +
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTT 271
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVS 53
+ ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG PR R R R +
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTT 271
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVS 53
+ ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG PR R R R +
Sbjct: 217 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTT 267
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 5/64 (7%)
Query: 8 VQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN---RGGPRGRGRGRVSRGAAMYGGYRP 64
V+TA+AM+E+LFRGRQIKV KRTNRPG+STTN RG RGRG RVSR A + +R
Sbjct: 150 VETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRG-ARVSR-ACCHSTFRG 207
Query: 65 VRRA 68
RRA
Sbjct: 208 ARRA 211
>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Pabp2 PE=3 SV=1
Length = 225
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Query: 5 RDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN---RGGPRGRGRGRVSRGAAMYGG 61
++ V+TA+AM+E+LFRGRQIKV KRTNRPG+STTN RG RGRG R SR A +
Sbjct: 147 KEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRG-ARASR-ACCHST 204
Query: 62 YRPVRRA 68
+R RRA
Sbjct: 205 FRGARRA 211
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGP 44
+ ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG P
Sbjct: 212 SDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFP 253
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGP 44
+ ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG P
Sbjct: 211 SDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFP 252
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGP 44
++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG P
Sbjct: 212 CDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFP 253
>sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens
GN=PABPN1L PE=2 SV=1
Length = 278
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/49 (61%), Positives = 36/49 (73%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGR 51
A + VQ A+ +D+SLFRGR IKV PKRTN PGIS+T+RGG RG R
Sbjct: 196 ATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSR 244
>sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus
GN=Pabpn1l PE=2 SV=1
Length = 269
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/51 (56%), Positives = 35/51 (68%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVS 53
A + VQ A+ +DES FRGR IKV PKRTN PGIS+T+RGG R R +
Sbjct: 188 ASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGISSTDRGGLRTHSSSRAA 238
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 32/38 (84%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 40
A+R+ V A+AMDE++FRGR IKV PKRTN PGIS+T+
Sbjct: 142 AERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTD 179
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 40
A+R+ V A+ MDE++FRGR IKV PKRTN PGIS+T+
Sbjct: 142 AERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTD 179
>sp|Q5XFR0|EPAB2_MOUSE Embryonic polyadenylate-binding protein 2 OS=Mus musculus
GN=Pabpn1l PE=2 SV=1
Length = 273
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVS 53
A V+ A+ +DES FRGR IKV PKRTN PGIS+T+RGG R R +
Sbjct: 192 ASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGISSTDRGGLRTHSGNRAA 242
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 5 RDEVQTAMAMDESLFRGRQIKVNPKRTNRP 34
++ + AMA+++S F RQ+K+ PKRTN P
Sbjct: 152 KESIINAMALNDSFFNERQLKITPKRTNLP 181
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 8 VQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRG 46
++ A+ M+ SLFR R I V KRTN PG+ RG RG
Sbjct: 109 IENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRG 147
>sp|Q09301|YQOC_CAEEL Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans
GN=EEED8.12 PE=4 SV=1
Length = 197
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 8 VQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRG 46
++ A+ M+ SLFR R I V KRTN PG+ RG RG
Sbjct: 115 IENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRG 153
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 8 VQTAMAMDESLFRGRQIKVNPKRTNRPGIS 37
V A+ ++ S+ R +KV PKRTN PG+S
Sbjct: 109 VPNALLLNGSMLHERPLKVTPKRTNVPGMS 138
>sp|A4Q9F4|TTL11_MOUSE Tubulin polyglutamylase TTLL11 OS=Mus musculus GN=Ttll11 PE=2 SV=1
Length = 727
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 20 RGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVSR 54
RGR ++ NP + NRP S T PR G ++S+
Sbjct: 692 RGRPLQRNPPQMNRPEHSATGSSAPRVIGASKLSQ 726
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,390,369
Number of Sequences: 539616
Number of extensions: 887089
Number of successful extensions: 3462
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3358
Number of HSP's gapped (non-prelim): 113
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)