Query psy13491
Match_columns 69
No_of_seqs 116 out of 244
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 20:44:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ucg_A Polyadenylate-binding p 98.4 2.3E-07 7.9E-12 53.4 3.5 34 3-36 56-89 (89)
2 2jwn_A Embryonic polyadenylate 98.3 1.2E-06 4E-11 53.6 4.7 37 3-39 86-122 (124)
3 1h2v_Z 20 kDa nuclear CAP bind 98.1 2.7E-06 9.2E-11 54.0 4.2 33 3-35 89-122 (156)
4 1x4c_A Splicing factor, argini 97.8 5.2E-05 1.8E-09 45.6 5.7 33 3-35 58-96 (108)
5 3beg_B Splicing factor, argini 97.7 4E-05 1.4E-09 46.9 4.3 34 3-36 59-98 (115)
6 2dnr_A Synaptojanin-1; RRM dom 97.7 3.6E-05 1.2E-09 48.5 3.6 32 3-34 57-88 (91)
7 3ex7_B RNA-binding protein 8A; 97.5 6.7E-05 2.3E-09 45.7 3.5 33 3-35 72-105 (126)
8 1u6f_A Tcubp1, RNA-binding pro 97.5 0.00025 8.4E-09 43.8 5.8 30 3-32 92-122 (139)
9 2dgu_A Heterogeneous nuclear r 97.5 0.00032 1.1E-08 41.5 6.1 32 3-34 53-85 (103)
10 2dng_A Eukaryotic translation 97.5 0.00022 7.6E-09 42.1 5.0 31 3-33 64-94 (103)
11 3p5t_L Cleavage and polyadenyl 97.5 6.3E-05 2.2E-09 43.8 2.5 32 3-34 53-85 (90)
12 3pgw_S U1-70K; protein-RNA com 97.5 0.00033 1.1E-08 52.4 7.0 30 3-32 152-182 (437)
13 4fxv_A ELAV-like protein 1; RN 97.5 0.00012 4E-09 44.0 3.7 29 3-31 69-98 (99)
14 4a8x_A RNA-binding protein wit 97.4 0.00016 5.4E-09 41.1 3.7 31 3-33 55-86 (88)
15 2jvr_A Nucleolar protein 3; RN 97.4 0.00013 4.3E-09 45.6 3.5 29 3-31 75-104 (111)
16 2dnz_A Probable RNA-binding pr 97.4 0.00028 9.7E-09 40.7 4.5 33 3-35 55-88 (95)
17 2fy1_A RNA-binding motif prote 97.4 0.00045 1.5E-08 42.3 5.7 29 3-31 56-85 (116)
18 2dgt_A RNA-binding protein 30; 97.3 0.00049 1.7E-08 39.8 4.8 31 3-33 52-83 (92)
19 1x5t_A Splicing factor 3B subu 97.2 0.00065 2.2E-08 39.2 5.1 31 3-33 56-87 (96)
20 2dnm_A SRP46 splicing factor; 97.2 0.00024 8.3E-09 41.8 3.3 33 3-35 63-96 (103)
21 3q2s_C Cleavage and polyadenyl 97.2 7.2E-05 2.5E-09 51.3 1.0 27 3-29 120-147 (229)
22 1x4a_A Splicing factor, argini 97.2 0.00055 1.9E-08 40.8 4.8 31 3-33 69-100 (109)
23 3mdf_A Peptidyl-prolyl CIS-tra 97.2 0.00031 1.1E-08 39.7 3.4 28 3-30 57-85 (85)
24 1ufw_A Synaptojanin 2; RNP dom 97.2 0.0002 6.8E-09 45.5 2.6 28 3-30 66-93 (95)
25 2cpe_A RNA-binding protein EWS 97.2 0.00064 2.2E-08 40.6 4.8 32 3-34 73-105 (113)
26 2d9p_A Polyadenylate-binding p 97.2 0.00065 2.2E-08 39.9 4.7 32 3-34 63-95 (103)
27 1wi8_A EIF-4B, eukaryotic tran 97.2 0.00082 2.8E-08 39.6 5.1 30 3-32 65-94 (104)
28 1wf1_A RNA-binding protein RAL 97.2 0.00043 1.5E-08 41.4 3.9 32 3-34 70-102 (110)
29 2dgx_A KIAA0430 protein; RRM d 97.2 0.00036 1.2E-08 41.0 3.5 29 3-31 60-89 (96)
30 2cpi_A CCR4-NOT transcription 97.2 0.00058 2E-08 41.2 4.5 31 3-33 71-102 (111)
31 3s8s_A Histone-lysine N-methyl 97.2 0.00039 1.3E-08 42.7 3.7 28 3-30 56-84 (110)
32 2dgs_A DAZ-associated protein 97.2 0.00074 2.5E-08 39.4 4.7 29 3-31 60-88 (99)
33 2cqb_A Peptidyl-prolyl CIS-tra 97.2 0.00078 2.7E-08 39.4 4.8 31 3-33 62-93 (102)
34 2cpd_A Apobec-1 stimulating pr 97.2 0.00073 2.5E-08 39.6 4.7 31 3-33 59-90 (99)
35 2cqh_A IGF-II mRNA-binding pro 97.2 0.00087 3E-08 38.7 5.0 30 3-32 52-83 (93)
36 2dnq_A RNA-binding protein 4B; 97.2 0.00075 2.6E-08 38.9 4.7 31 3-33 50-81 (90)
37 2fc8_A NCL protein; structure 97.1 0.00085 2.9E-08 39.2 4.9 31 3-33 62-93 (102)
38 2hzc_A Splicing factor U2AF 65 97.1 0.00034 1.2E-08 39.7 3.0 25 3-27 61-85 (87)
39 2hgn_A Heterogeneous nuclear r 97.1 0.00012 4E-09 47.5 1.1 29 3-31 94-122 (139)
40 2dgw_A Probable RNA-binding pr 97.1 0.00045 1.5E-08 39.8 3.4 29 3-31 58-86 (91)
41 1x5u_A Splicing factor 3B subu 97.1 0.00094 3.2E-08 39.2 4.8 31 3-33 65-96 (105)
42 2e5g_A U6 snRNA-specific termi 97.1 0.00071 2.4E-08 39.4 4.1 29 3-31 53-81 (94)
43 1fj7_A Nucleolin RBD1, protein 97.1 0.00052 1.8E-08 40.2 3.5 29 3-31 66-94 (101)
44 1wez_A HnRNP H', FTP-3, hetero 97.1 0.00052 1.8E-08 41.4 3.5 28 3-30 63-90 (102)
45 2cpf_A RNA binding motif prote 97.1 0.0011 3.7E-08 38.5 4.8 31 3-33 58-89 (98)
46 2do0_A HnRNP M, heterogeneous 97.1 0.0023 7.8E-08 38.0 6.3 33 3-35 64-97 (114)
47 3md1_A Nuclear and cytoplasmic 97.1 0.0006 2E-08 38.3 3.5 29 3-31 51-80 (83)
48 2e5j_A Methenyltetrahydrofolat 97.1 0.00057 2E-08 40.0 3.6 30 3-32 64-94 (97)
49 1x5p_A Negative elongation fac 97.0 0.0012 4E-08 38.6 4.8 30 3-32 57-87 (97)
50 2cqi_A Nucleolysin TIAR; RNA r 97.0 0.0011 3.9E-08 38.8 4.8 30 3-32 63-93 (103)
51 2mss_A Protein (musashi1); RNA 97.0 0.00036 1.2E-08 38.8 2.4 26 3-28 49-74 (75)
52 2cq0_A Eukaryotic translation 97.0 0.0012 4.1E-08 38.8 4.8 31 3-33 65-96 (103)
53 2cqc_A Arginine/serine-rich sp 97.0 0.00054 1.9E-08 39.4 3.2 29 3-31 65-94 (95)
54 2cqp_A RNA-binding protein 12; 97.0 0.00092 3.1E-08 38.8 4.2 28 3-30 65-93 (98)
55 2dgo_A Cytotoxic granule-assoc 97.0 0.00087 3E-08 40.1 4.1 32 3-34 65-97 (115)
56 2fc9_A NCL protein; structure 97.0 0.0015 5E-08 38.2 5.0 30 3-32 61-91 (101)
57 1whw_A Hypothetical protein ri 97.0 0.00078 2.7E-08 39.2 3.8 32 3-34 58-90 (99)
58 1wg1_A KIAA1579 protein, homol 97.0 0.00075 2.6E-08 38.9 3.7 31 3-33 48-79 (88)
59 2e5h_A Zinc finger CCHC-type a 97.0 0.00065 2.2E-08 39.1 3.4 27 3-29 66-93 (94)
60 2cq3_A RNA-binding protein 9; 97.0 0.0015 5E-08 38.4 5.0 31 3-33 63-94 (103)
61 2dnp_A RNA-binding protein 14; 97.0 0.00093 3.2E-08 38.5 4.0 30 3-32 51-81 (90)
62 4f25_A Polyadenylate-binding p 97.0 0.00088 3E-08 40.7 4.0 30 3-32 53-83 (115)
63 3bs9_A Nucleolysin TIA-1 isofo 97.0 0.00065 2.2E-08 38.5 3.2 29 3-31 56-85 (87)
64 1p27_B RNA-binding protein 8A; 97.0 0.00062 2.1E-08 40.1 3.1 32 3-34 73-105 (106)
65 2cpx_A Hypothetical protein FL 97.0 0.0014 5E-08 39.0 4.8 32 3-34 75-107 (115)
66 2dgv_A HnRNP M, heterogeneous 97.0 0.00062 2.1E-08 39.1 3.0 31 3-33 56-87 (92)
67 3v4m_A Splicing factor U2AF 65 96.9 0.0006 2.1E-08 41.8 3.1 26 3-28 67-93 (105)
68 2ywk_A Putative RNA-binding pr 96.9 0.00059 2E-08 39.4 2.8 28 3-30 65-93 (95)
69 1x5s_A Cold-inducible RNA-bind 96.9 0.00098 3.3E-08 39.0 3.8 31 3-33 62-93 (102)
70 1why_A Hypothetical protein ri 96.9 0.0011 3.9E-08 38.6 3.9 31 3-33 61-94 (97)
71 1x4g_A Nucleolysin TIAR; struc 96.9 0.0017 5.7E-08 38.7 4.7 31 3-33 69-100 (109)
72 2kxn_B Transformer-2 protein h 96.9 0.00067 2.3E-08 42.5 3.0 32 3-34 96-128 (129)
73 2do4_A Squamous cell carcinoma 96.9 0.0012 4.1E-08 38.6 3.9 30 3-32 66-96 (100)
74 2cpz_A CUG triplet repeat RNA- 96.9 0.0018 6.3E-08 38.7 4.7 31 3-33 75-106 (115)
75 2x1f_A MRNA 3'-END-processing 96.8 0.0012 3.9E-08 38.5 3.6 30 3-32 52-82 (96)
76 1oo0_B CG8781-PA, drosophila Y 96.8 0.0011 3.6E-08 39.4 3.5 32 3-34 76-108 (110)
77 3egn_A RNA-binding protein 40; 96.8 0.0013 4.3E-08 41.0 3.9 32 3-34 100-132 (143)
78 2dnn_A RNA-binding protein 12; 96.8 0.00094 3.2E-08 41.3 3.3 27 3-29 64-90 (109)
79 2xnq_A Nuclear polyadenylated 96.8 0.0013 4.5E-08 38.9 3.7 30 3-32 65-95 (97)
80 2cpj_A Non-POU domain-containi 96.8 0.0015 5.1E-08 38.2 3.9 31 3-33 59-90 (99)
81 2cph_A RNA binding motif prote 96.8 0.0023 7.7E-08 37.6 4.7 32 3-34 66-99 (107)
82 2la6_A RNA-binding protein FUS 96.8 0.001 3.5E-08 38.9 3.1 27 3-29 71-98 (99)
83 2db1_A Heterogeneous nuclear r 96.8 0.00097 3.3E-08 40.9 3.1 27 3-29 69-95 (118)
84 2j76_E EIF-4B, EIF4B, eukaryot 96.8 0.00086 2.9E-08 39.6 2.7 29 3-31 69-97 (100)
85 2e44_A Insulin-like growth fac 96.8 0.0014 4.8E-08 37.9 3.5 29 3-31 62-91 (96)
86 2la4_A Nuclear and cytoplasmic 96.7 0.00094 3.2E-08 39.1 2.7 29 3-31 71-100 (101)
87 2krb_A Eukaryotic translation 96.7 0.00057 2E-08 38.8 1.7 25 3-27 55-81 (81)
88 2lea_A Serine/arginine-rich sp 96.7 0.0012 4.3E-08 41.5 3.4 33 3-35 97-130 (135)
89 2div_A TRNA selenocysteine ass 96.7 0.0016 5.5E-08 37.8 3.7 32 3-34 60-96 (99)
90 2ek1_A RNA-binding protein 12; 96.7 0.0012 4.3E-08 37.9 3.2 27 3-29 65-92 (95)
91 1whx_A Hypothetical protein ri 96.7 0.0011 3.8E-08 40.3 3.0 31 3-33 54-85 (111)
92 1nu4_A U1A RNA binding domain; 96.7 0.0018 6.2E-08 37.4 3.7 30 3-32 59-89 (97)
93 2pe8_A Splicing factor 45; RRM 96.7 0.0015 5E-08 40.1 3.4 28 3-30 64-92 (105)
94 1s79_A Lupus LA protein; RRM, 96.7 0.00077 2.6E-08 40.9 2.1 29 3-31 60-88 (103)
95 3s6e_A RNA-binding protein 39; 96.7 0.0013 4.3E-08 41.4 3.1 27 3-29 63-90 (114)
96 2dhg_A TRNA selenocysteine ass 96.7 0.0024 8.2E-08 37.4 4.1 30 3-32 59-90 (104)
97 1wel_A RNA-binding protein 12; 96.7 0.00073 2.5E-08 41.4 1.9 27 3-29 75-101 (124)
98 2kvi_A Nuclear polyadenylated 96.7 0.0011 3.9E-08 38.7 2.7 31 3-33 53-84 (96)
99 1fjc_A Nucleolin RBD2, protein 96.7 0.0015 5.1E-08 37.8 3.1 29 3-31 61-90 (96)
100 2khc_A Testis-specific RNP-typ 96.7 0.00096 3.3E-08 40.1 2.3 28 3-30 90-118 (118)
101 2jvo_A Nucleolar protein 3; nu 96.7 0.0018 6.2E-08 39.2 3.6 31 3-33 73-104 (108)
102 2ytc_A PRE-mRNA-splicing facto 96.6 0.0016 5.6E-08 36.7 3.2 28 3-30 56-85 (85)
103 2kn4_A Immunoglobulin G-bindin 96.6 0.0015 5.2E-08 40.9 3.3 33 3-35 120-153 (158)
104 1p1t_A Cleavage stimulation fa 96.6 0.0017 5.8E-08 37.9 3.3 30 3-32 58-88 (104)
105 2hvz_A Splicing factor, argini 96.6 0.0026 9E-08 37.1 4.1 31 3-33 45-76 (101)
106 3ns6_A Eukaryotic translation 96.6 0.0015 5.1E-08 38.8 3.1 28 3-30 62-91 (100)
107 3s7r_A Heterogeneous nuclear r 96.6 0.0013 4.6E-08 37.3 2.8 26 3-28 61-86 (87)
108 1jmt_A Splicing factor U2AF 35 96.6 0.0013 4.5E-08 40.1 2.7 26 3-28 76-102 (104)
109 3ulh_A THO complex subunit 4; 96.5 0.002 7E-08 37.9 3.3 27 3-29 78-105 (107)
110 3ue2_A Poly(U)-binding-splicin 96.5 0.0017 5.8E-08 40.9 3.1 26 3-28 79-105 (118)
111 2cpy_A RNA-binding protein 12; 96.5 0.0017 5.8E-08 39.3 2.9 29 3-31 65-93 (114)
112 2lmi_A GRSF-1, G-rich sequence 96.5 0.0012 4E-08 39.6 2.1 28 3-30 63-90 (107)
113 2a3j_A U1 small nuclear ribonu 96.5 0.002 6.9E-08 40.8 3.3 30 3-32 80-110 (127)
114 2hgl_A HNRPF protein, heteroge 96.5 0.0014 5E-08 42.0 2.6 27 3-29 96-122 (136)
115 2diu_A KIAA0430 protein; struc 96.5 0.0018 6.1E-08 41.0 3.0 34 3-36 54-88 (96)
116 2dit_A HIV TAT specific factor 96.5 0.0027 9.1E-08 38.4 3.6 28 3-30 72-100 (112)
117 2lcw_A RNA-binding protein FUS 95.5 0.00046 1.6E-08 41.6 0.0 30 3-32 65-95 (116)
118 2wbr_A GW182, gawky, LD47780P; 96.4 0.0024 8.2E-08 39.8 3.0 27 3-29 51-78 (89)
119 2err_A Ataxin-2-binding protei 96.4 0.0026 8.8E-08 38.3 3.1 29 3-31 77-106 (109)
120 2dnh_A Bruno-like 5, RNA bindi 96.4 0.0054 1.9E-07 35.9 4.4 32 3-34 64-99 (105)
121 4f02_A Polyadenylate-binding p 96.4 0.003 1E-07 41.5 3.5 28 3-30 151-179 (213)
122 2g4b_A Splicing factor U2AF 65 96.4 0.0037 1.3E-07 38.5 3.8 30 3-32 59-88 (172)
123 3n9u_C Cleavage and polyadenyl 96.4 0.003 1E-07 40.9 3.5 28 3-30 107-135 (156)
124 2cq4_A RNA binding motif prote 96.4 0.0014 4.9E-08 39.1 1.8 29 3-31 75-103 (114)
125 1x4e_A RNA binding motif, sing 96.3 0.0006 2E-08 38.7 0.0 28 3-30 55-83 (85)
126 1fje_B Nucleolin RBD12, protei 96.3 0.0032 1.1E-07 39.2 3.3 29 3-31 62-90 (175)
127 2jrs_A RNA-binding protein 39; 96.3 0.0027 9.3E-08 38.3 2.9 28 3-30 76-104 (108)
128 1x4b_A Heterogeneous nuclear r 96.3 0.0064 2.2E-07 36.3 4.6 29 3-31 77-105 (116)
129 2bz2_A Negative elongation fac 96.3 0.004 1.4E-07 38.6 3.7 30 3-32 81-111 (121)
130 2dgp_A Bruno-like 4, RNA bindi 96.3 0.007 2.4E-07 35.4 4.6 31 3-33 63-97 (106)
131 2qfj_A FBP-interacting repress 96.3 0.005 1.7E-07 39.2 4.2 34 3-36 175-209 (216)
132 1iqt_A AUF1, heterogeneous nuc 96.3 0.0019 6.6E-08 35.6 1.9 26 3-28 49-74 (75)
133 2yh0_A Splicing factor U2AF 65 96.3 0.0029 1E-07 39.9 2.9 31 3-33 59-89 (198)
134 2cqd_A RNA-binding region cont 96.3 0.015 5.1E-07 34.7 6.0 29 3-32 67-96 (116)
135 3md3_A Nuclear and cytoplasmic 96.2 0.0043 1.5E-07 37.7 3.4 28 3-30 137-165 (166)
136 2nlw_A Eukaryotic translation 96.2 0.002 7E-08 38.4 1.9 28 3-30 69-98 (105)
137 2kt5_A RNA and export factor-b 96.2 0.0045 1.6E-07 37.5 3.4 30 3-32 84-114 (124)
138 3lqv_A PRE-mRNA branch site pr 96.2 0.0041 1.4E-07 37.0 3.2 28 3-30 55-83 (115)
139 1wg5_A Heterogeneous nuclear r 96.1 0.0034 1.2E-07 37.3 2.7 27 3-29 65-91 (104)
140 2cjk_A Nuclear polyadenylated 96.1 0.0034 1.2E-07 38.5 2.7 28 3-30 137-164 (167)
141 3tyt_A Heterogeneous nuclear r 96.1 0.0045 1.6E-07 41.3 3.4 29 3-31 50-79 (205)
142 1x4h_A RNA-binding protein 28; 96.1 0.0097 3.3E-07 35.0 4.6 30 3-32 65-101 (111)
143 1rk8_A CG8781-PA, CG8781-PA pr 96.1 0.0048 1.6E-07 39.4 3.4 32 3-34 122-154 (165)
144 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.1 0.0038 1.3E-07 38.0 2.6 26 3-28 113-139 (140)
145 1fje_B Nucleolin RBD12, protei 96.0 0.0047 1.6E-07 38.4 3.0 28 3-30 144-172 (175)
146 2lkz_A RNA-binding protein 5; 96.0 0.004 1.4E-07 37.5 2.5 29 3-31 61-94 (95)
147 2ki2_A SS-DNA binding protein 96.0 0.0031 1.1E-07 36.0 1.9 30 3-33 51-81 (90)
148 2dis_A Unnamed protein product 95.9 0.0074 2.5E-07 35.5 3.5 30 3-32 60-92 (109)
149 1l3k_A Heterogeneous nuclear r 95.9 0.007 2.4E-07 38.0 3.5 30 3-32 154-183 (196)
150 2i2y_A Fusion protein consists 95.9 0.0061 2.1E-07 38.1 3.2 29 3-31 118-147 (150)
151 2dh8_A DAZ-associated protein 95.8 0.0066 2.3E-07 35.6 2.8 29 3-31 66-94 (105)
152 2g4b_A Splicing factor U2AF 65 95.7 0.0055 1.9E-07 37.8 2.3 26 3-28 144-170 (172)
153 2yh0_A Splicing factor U2AF 65 95.6 0.0076 2.6E-07 37.9 2.6 30 3-32 164-194 (198)
154 1fxl_A Paraneoplastic encephal 95.5 0.015 5.3E-07 35.2 3.7 30 3-32 52-82 (167)
155 1uaw_A Mouse-musashi-1; RNP-ty 95.5 0.007 2.4E-07 33.3 1.9 25 3-28 50-75 (77)
156 2lxi_A RNA-binding protein 10; 95.5 0.011 3.9E-07 34.5 3.0 28 3-30 52-81 (91)
157 2hgm_A HNRPF protein, heteroge 95.4 0.0041 1.4E-07 39.6 1.0 27 3-29 92-118 (126)
158 2voo_A Lupus LA protein; RNA-b 95.4 0.013 4.6E-07 38.8 3.6 30 3-32 158-187 (193)
159 1qm9_A Polypyrimidine tract-bi 95.4 0.011 3.6E-07 37.7 2.8 30 3-32 166-197 (198)
160 2adc_A Polypyrimidine tract-bi 95.3 0.015 5.2E-07 38.5 3.6 30 3-32 197-228 (229)
161 2rs2_A Musashi-1, RNA-binding 95.3 0.022 7.5E-07 34.2 3.9 29 3-31 75-103 (109)
162 2dha_A FLJ20171 protein; RRM d 95.3 0.0087 3E-07 37.7 2.2 27 3-29 76-102 (123)
163 3md3_A Nuclear and cytoplasmic 95.3 0.023 7.8E-07 34.4 4.0 31 3-33 49-80 (166)
164 3dxb_A Thioredoxin N-terminall 95.3 0.011 3.8E-07 38.9 2.8 26 3-28 183-209 (222)
165 1x4d_A Matrin 3; structural ge 95.2 0.013 4.5E-07 36.0 2.6 30 3-32 60-92 (102)
166 2f3j_A RNA and export factor b 95.1 0.012 4.3E-07 38.6 2.6 29 3-31 137-166 (177)
167 1b7f_A Protein (SXL-lethal pro 95.1 0.027 9.1E-07 34.4 3.9 29 3-31 53-82 (168)
168 2ghp_A U4/U6 snRNA-associated 95.1 0.018 6.1E-07 38.8 3.4 29 3-31 262-290 (292)
169 2e5i_A Heterogeneous nuclear r 95.1 0.02 6.8E-07 36.5 3.4 29 3-31 70-101 (124)
170 3pgw_A U1-A; protein-RNA compl 95.0 0.021 7.1E-07 38.3 3.5 31 3-33 60-91 (282)
171 3pgw_A U1-A; protein-RNA compl 95.0 0.022 7.4E-07 38.2 3.5 28 3-30 252-281 (282)
172 1qm9_A Polypyrimidine tract-bi 94.9 0.019 6.3E-07 36.5 2.8 30 3-32 49-79 (198)
173 1b7f_A Protein (SXL-lethal pro 94.8 0.021 7.1E-07 34.9 2.9 26 3-28 139-167 (168)
174 2m2b_A RNA-binding protein 10; 94.8 0.019 6.5E-07 35.3 2.7 33 4-37 76-113 (131)
175 2adc_A Polypyrimidine tract-bi 94.7 0.025 8.5E-07 37.4 3.3 30 3-32 80-110 (229)
176 2cq2_A Hypothetical protein LO 94.7 0.031 1.1E-06 35.3 3.6 32 3-35 71-108 (114)
177 1sjr_A Polypyrimidine tract-bi 94.6 0.028 9.4E-07 37.9 3.3 29 3-31 92-123 (164)
178 1sjq_A Polypyrimidine tract-bi 94.6 0.023 7.9E-07 35.4 2.7 29 3-31 60-91 (105)
179 3smz_A Protein raver-1, ribonu 94.5 0.041 1.4E-06 36.9 3.9 30 3-32 234-264 (284)
180 3zzy_A Polypyrimidine tract-bi 94.3 0.048 1.6E-06 35.2 3.9 29 3-31 74-105 (130)
181 1l3k_A Heterogeneous nuclear r 94.3 0.048 1.6E-06 34.1 3.7 29 3-31 63-91 (196)
182 1x5o_A RNA binding motif, sing 94.2 0.048 1.6E-06 32.2 3.4 28 3-30 74-110 (114)
183 2ghp_A U4/U6 snRNA-associated 94.2 0.035 1.2E-06 37.3 3.1 29 3-31 89-117 (292)
184 2cqg_A TDP-43, TAR DNA-binding 94.1 0.1 3.6E-06 30.2 4.7 28 3-31 65-92 (103)
185 2qfj_A FBP-interacting repress 94.1 0.031 1E-06 35.5 2.5 26 3-28 78-104 (216)
186 3r27_A HnRNP L, heterogeneous 93.8 0.04 1.4E-06 34.1 2.7 28 3-30 65-95 (100)
187 1fxl_A Paraneoplastic encephal 93.7 0.048 1.6E-06 32.9 2.8 25 3-27 138-165 (167)
188 2ad9_A Polypyrimidine tract-bi 93.7 0.051 1.8E-06 34.4 3.0 29 3-31 75-106 (119)
189 2cq1_A PTB-like protein L; RRM 93.7 0.076 2.6E-06 32.1 3.7 30 3-32 59-91 (101)
190 2l9w_A U4/U6 snRNA-associated- 93.5 0.041 1.4E-06 36.2 2.4 25 4-28 71-96 (117)
191 1wex_A Hypothetical protein (r 93.4 0.05 1.7E-06 33.0 2.5 29 3-31 59-90 (104)
192 1x4f_A Matrin 3; structural ge 93.3 0.04 1.4E-06 34.5 2.0 29 3-31 70-101 (112)
193 3smz_A Protein raver-1, ribonu 93.3 0.082 2.8E-06 35.4 3.6 29 3-31 65-94 (284)
194 4f02_A Polyadenylate-binding p 92.9 0.11 3.7E-06 33.9 3.7 29 3-31 65-94 (213)
195 3sde_A Paraspeckle component 1 92.7 0.11 3.7E-06 35.0 3.6 29 3-31 66-95 (261)
196 3nmr_A Cugbp ELAV-like family 92.5 0.1 3.5E-06 31.8 3.0 27 3-29 144-174 (175)
197 2xs2_A Deleted in azoospermia- 91.9 0.035 1.2E-06 32.2 0.3 27 3-30 58-84 (102)
198 3u1l_A PRE-mRNA-splicing facto 91.8 0.12 4.2E-06 36.3 3.1 31 3-33 187-230 (240)
199 2j8a_A Histone-lysine N-methyl 88.1 0.33 1.1E-05 32.3 2.7 26 8-33 69-97 (136)
200 2d9o_A DNAJ (HSP40) homolog, s 86.6 1.4 4.7E-05 26.6 4.7 30 3-33 62-91 (100)
201 2dnl_A Cytoplasmic polyadenyla 86.3 0.61 2.1E-05 27.7 2.9 22 3-26 60-82 (114)
202 3nmr_A Cugbp ELAV-like family 86.0 0.68 2.3E-05 28.0 3.1 29 3-31 55-87 (175)
203 3tyt_A Heterogeneous nuclear r 85.0 0.8 2.7E-05 30.2 3.2 21 3-23 173-194 (205)
204 3sde_A Paraspeckle component 1 83.5 0.78 2.7E-05 30.8 2.7 29 3-31 145-178 (261)
205 1wey_A Calcipressin 1; structu 79.8 0.84 2.9E-05 29.0 1.7 27 4-30 55-82 (104)
206 2cjk_A Nuclear polyadenylated 79.8 1.1 3.7E-05 27.0 2.2 26 3-29 53-78 (167)
207 2i2y_A Fusion protein consists 79.6 0.37 1.3E-05 29.8 -0.0 28 2-30 20-49 (150)
208 1wf0_A TDP-43, TAR DNA-binding 78.5 2.4 8.2E-05 23.6 3.3 28 3-31 50-77 (88)
209 3p3d_A Nucleoporin 53; structu 75.4 2.5 8.5E-05 27.9 3.1 27 3-29 70-96 (132)
210 3d2w_A TAR DNA-binding protein 60.8 9.8 0.00034 21.5 3.3 24 4-30 57-82 (89)
211 1wwh_A Nucleoporin 35, nucleop 58.9 8.9 0.0003 24.6 3.1 26 3-28 67-93 (119)
212 3tht_A Alkylated DNA repair pr 58.8 7.3 0.00025 28.5 3.0 18 3-20 64-82 (345)
213 2g0c_A ATP-dependent RNA helic 49.8 5 0.00017 22.4 0.7 25 6-30 50-75 (76)
214 2iec_A Uncharacterized protein 47.9 11 0.00039 24.9 2.3 29 2-33 37-67 (131)
215 1owx_A Lupus LA protein, SS-B, 34.3 32 0.0011 21.6 2.7 23 5-27 66-91 (121)
216 2w2s_A Matrix protein; viral a 27.0 31 0.0011 24.0 1.9 21 15-35 146-166 (202)
No 1
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.40 E-value=2.3e-07 Score=53.42 Aligned_cols=34 Identities=71% Similarity=1.140 Sum_probs=31.3
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCccCCCCC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGI 36 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN~PG~ 36 (69)
++++++++||+||+.+|.|+.|+|.+++++.|||
T Consensus 56 ~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~~pg~ 89 (89)
T 3ucg_A 56 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 89 (89)
T ss_dssp SSTHHHHHHGGGTTCEETTEECEEEETTTTSCC-
T ss_pred CCHHHHHHHHhcCCCEECCcEEEEEEccCCCCCC
Confidence 4678999999999999999999999999999986
No 2
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.26 E-value=1.2e-06 Score=53.57 Aligned_cols=37 Identities=68% Similarity=1.017 Sum_probs=34.2
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCccCCCCCCCC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTT 39 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN~PG~~~~ 39 (69)
++++++++||+||+.+|.|+.|+|..++++.|+++++
T Consensus 86 ~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~~~~~ 122 (124)
T 2jwn_A 86 AERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISST 122 (124)
T ss_dssp SSHHHHHHHHTTTTCEETTEECEEEESSCCCSSCCCS
T ss_pred CCHHHHHHHHhcCCCeECCeEEEEEECCCCCCCCCCC
Confidence 5789999999999999999999999999999998854
No 3
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.11 E-value=2.7e-06 Score=54.03 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=29.0
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG 35 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG 35 (69)
+++++|++||+ ||+.+|.|+.|+|...+...+.
T Consensus 89 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 89 YSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp SSHHHHHHHHHHTTTSEETTEECEEEEESCCCTT
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCc
Confidence 57899999996 9999999999999998876554
No 4
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=5.2e-05 Score=45.60 Aligned_cols=33 Identities=21% Similarity=0.490 Sum_probs=28.7
Q ss_pred cCHHHHHHHHH-ccCCeeeC-----ceeEEeeCccCCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRG-----RQIKVNPKRTNRPG 35 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frG-----R~IkV~~KRtN~PG 35 (69)
++++++++||+ ||+.+|.| +.|+|......-+.
T Consensus 58 ~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 58 VRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp SSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred CCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 57899999996 99999999 99999988775544
No 5
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.72 E-value=4e-05 Score=46.93 Aligned_cols=34 Identities=21% Similarity=0.514 Sum_probs=26.0
Q ss_pred cCHHHHHHHHH-ccCCeeeCce-----eEEeeCccCCCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQ-----IKVNPKRTNRPGI 36 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~-----IkV~~KRtN~PG~ 36 (69)
++++++++||+ ||+++|.|++ |+|...+.+-|..
T Consensus 59 ~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~~~~~ 98 (115)
T 3beg_B 59 VRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSY 98 (115)
T ss_dssp SSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC----CC
T ss_pred CCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCCCCCC
Confidence 57899999996 9999999999 8888777665543
No 6
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.67 E-value=3.6e-05 Score=48.46 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=29.6
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN~P 34 (69)
.|.+++.+||+||+..+.||.|||..|.++-+
T Consensus 57 ~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 57 LEGSSALNVLSLNGKELLNRTITIALKSPSGP 88 (91)
T ss_dssp SSHHHHHHGGGGTTCEETTEEEEEEECCCSSC
T ss_pred CChHHHHHHHhcCCeEeCCeEEEEEeCCCCcc
Confidence 47899999999999999999999999998864
No 7
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.55 E-value=6.7e-05 Score=45.73 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=28.2
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG 35 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG 35 (69)
+++++|++||+ ||+.+|.|+.|+|.......+.
T Consensus 72 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 72 ETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp SSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence 57899999995 9999999999999988765543
No 8
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.52 E-value=0.00025 Score=43.83 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=26.8
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
+++++|++||+ ||+.+|.|+.|+|....+.
T Consensus 92 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 92 QSGSSAQQAIAGLNGFNILNKRLKVALAASG 122 (139)
T ss_dssp SSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 57899999996 9999999999999987754
No 9
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.51 E-value=0.00032 Score=41.49 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.9
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P 34 (69)
++++++++||+ ||+.+|.|+.|+|........
T Consensus 53 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 53 DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 57899999996 999999999999998876543
No 10
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.47 E-value=0.00022 Score=42.11 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=27.4
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+||+.+|.|+.|+|.......
T Consensus 64 ~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 64 DEVDSLKEALTYDGALLGDRSLRVDIAEGRK 94 (103)
T ss_dssp SSHHHHHHHGGGTTCEETTEECEEEECCCCC
T ss_pred CCHHHHHHHHhhCCCeECCeEEEEEEecCCC
Confidence 5789999999999999999999999876543
No 11
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.47 E-value=6.3e-05 Score=43.79 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=24.3
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~P 34 (69)
++++++++|| +||+.+|.|++|+|.......|
T Consensus 53 ~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 53 GSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp -CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred CCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 5789999999 5999999999999987776544
No 12
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.46 E-value=0.00033 Score=52.40 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=26.8
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN 32 (69)
+++++|++|| +||+.+|.|++|+|..+...
T Consensus 152 ~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 152 EHERDMHSAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred ccHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence 5789999999 59999999999999988764
No 13
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.45 E-value=0.00012 Score=44.05 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=26.1
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
+++++|++||+ ||+.+|.|++|+|..++.
T Consensus 69 ~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 69 VTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 57899999995 999999999999998764
No 14
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.41 E-value=0.00016 Score=41.06 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=27.1
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++|++ ||+.+|.|+.|+|...+...
T Consensus 55 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 55 ENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred ecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 57899999996 99999999999999876544
No 15
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.41 E-value=0.00013 Score=45.65 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=25.7
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+ ||+++|.|++|+|.....
T Consensus 75 ~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 75 PSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp SSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 57899999995 999999999999987653
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=0.00028 Score=40.73 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=28.4
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG 35 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG 35 (69)
++++++++||+ ||+.+|.|+.|+|.......++
T Consensus 55 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 55 SDSECARRALEQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp SCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred CCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence 57899999996 9999999999999988765543
No 17
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.37 E-value=0.00045 Score=42.30 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=25.9
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
+++++|++||+ ||+.+|.|+.|+|.....
T Consensus 56 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 56 ENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 57899999995 999999999999987764
No 18
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.27 E-value=0.00049 Score=39.81 Aligned_cols=31 Identities=16% Similarity=0.443 Sum_probs=27.1
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|+.|+|.......
T Consensus 52 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 52 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp SCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 57899999995 99999999999999887654
No 19
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.25 E-value=0.00065 Score=39.22 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=27.1
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|+.|+|......-
T Consensus 56 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 56 ASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp SSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 57899999997 99999999999998876543
No 20
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.24 E-value=0.00024 Score=41.82 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=28.6
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG 35 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG 35 (69)
++++++++||+ ||+.+|.|+.|+|.......|.
T Consensus 63 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 63 HDRRDAQDAEAAMDGAELDGRELRVQVARYGRRD 96 (103)
T ss_dssp SSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSC
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCC
Confidence 46789999996 9999999999999988876654
No 21
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.24 E-value=7.2e-05 Score=51.29 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=24.1
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K 29 (69)
+++++|++||+ ||+++|.|+.|+|...
T Consensus 120 ~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 120 GSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp SCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred CCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 46789999996 9999999999999854
No 22
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.23 E-value=0.00055 Score=40.75 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=27.2
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++|| +||+.+|.|+.|+|...+...
T Consensus 69 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 69 EDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 5789999999 599999999999999876644
No 23
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.22 E-value=0.00031 Score=39.65 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=24.9
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KR 30 (69)
++++++++|| .||+.+|.|++|+|...+
T Consensus 57 ~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 57 ELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 5789999999 599999999999998754
No 24
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.19 E-value=0.0002 Score=45.50 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=25.5
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR 30 (69)
.|.++|.+||+||+..+.||+|+|..|-
T Consensus 66 ~d~~sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 66 ADSHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp SCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred cChHHHHHHHhcCCeeeCCeEEEEeccC
Confidence 4778999999999999999999998774
No 25
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.18 E-value=0.00064 Score=40.56 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=27.9
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P 34 (69)
++++++++||+ ||+.+|.|+.|+|...+...+
T Consensus 73 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 73 EDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred CCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 57899999996 999999999999998776544
No 26
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.18 E-value=0.00065 Score=39.92 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=27.8
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P 34 (69)
+++++|++||+ ||+.+|.|+.|+|......-+
T Consensus 63 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 63 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp SSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 57899999996 999999999999998776543
No 27
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.17 E-value=0.00082 Score=39.65 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=26.9
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+||+.+|.|+.|+|......
T Consensus 65 ~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 65 EDLDSLLSALSLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp SSHHHHHHHHGGGTCEETTEECEEEECCCC
T ss_pred CCHHHHHHHHhcCCCEeCCcEEEEEEccCC
Confidence 578999999999999999999999977653
No 28
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.17 E-value=0.00043 Score=41.38 Aligned_cols=32 Identities=13% Similarity=0.369 Sum_probs=27.2
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~P 34 (69)
++++++++|| +||+.+|.|+.|+|...+...+
T Consensus 70 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 70 SNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp SSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 4778999999 5999999999999998775443
No 29
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.17 E-value=0.00036 Score=41.04 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=26.0
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+ ||+.+|.|+.|+|...+.
T Consensus 60 ~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 60 ENLQDAIGAVNSLHRYKIGSKKILVSLATG 89 (96)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 57899999996 999999999999998754
No 30
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.16 E-value=0.00058 Score=41.18 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=26.9
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|++|+|....+..
T Consensus 71 ~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 71 IRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred CcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 57899999996 99999999999998776543
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.16 E-value=0.00039 Score=42.65 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=25.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR 30 (69)
+++++|++||+ ||+++|.|++|+|...+
T Consensus 56 ~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 56 TSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 57899999995 99999999999998765
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.16 E-value=0.00074 Score=39.41 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=26.2
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+||+.+|.|+.|+|.....
T Consensus 60 ~~~~~a~~A~~~~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 60 EDEQSVDQAVNMHFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp SSHHHHHHHHHHCCCBSSSCBCEEEECCC
T ss_pred CCHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 57899999999999999999999987654
No 33
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=0.00078 Score=39.41 Aligned_cols=31 Identities=32% Similarity=0.473 Sum_probs=27.0
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|+.|+|.......
T Consensus 62 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 62 ELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 93 (102)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEeCCCCC
Confidence 57899999995 99999999999998876544
No 34
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=0.00073 Score=39.56 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=27.2
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|+.|+|...+..-
T Consensus 59 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 59 SNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp SSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 57899999996 99999999999999877543
No 35
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=0.00087 Score=38.69 Aligned_cols=30 Identities=10% Similarity=0.206 Sum_probs=26.4
Q ss_pred cCHHHHHHHHH-ccC-CeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDE-SLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~-s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+ .+|.|+.|+|......
T Consensus 52 ~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 52 PDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp SCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 57899999995 999 9999999999987654
No 36
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.15 E-value=0.00075 Score=38.88 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=26.9
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++|| .||+.+|.|++|+|.......
T Consensus 50 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 50 EDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 5789999999 499999999999999876544
No 37
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.14 E-value=0.00085 Score=39.24 Aligned_cols=31 Identities=10% Similarity=0.320 Sum_probs=27.0
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|+.|+|......-
T Consensus 62 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 62 NSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 93 (102)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence 57899999996 99999999999999876543
No 38
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.13 E-value=0.00034 Score=39.65 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=23.4
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEe
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVN 27 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~ 27 (69)
++++++++||+||+.+|.|++|+|.
T Consensus 61 ~~~~~a~~A~~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 61 RSVDETTQAMAFDGIIFQGQSLKIR 85 (87)
T ss_dssp SSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CCHHHHHHHHhcCCCEECCeEEEEe
Confidence 5789999999999999999999995
No 39
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.12 E-value=0.00012 Score=47.46 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=25.3
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+||+++|.||.|+|.....
T Consensus 94 ~~~e~A~~Al~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 94 ATHEEAVAAMSKDRANMQHRYIELFLNST 122 (139)
T ss_dssp SHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred CCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence 57899999999999999999999976543
No 40
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.10 E-value=0.00045 Score=39.81 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=26.0
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+||+.+|.|+.|+|.....
T Consensus 58 ~~~~~a~~A~~~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 58 SNEEEVKQALKCNREYMGGRYIEVFREKS 86 (91)
T ss_dssp SSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred CCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence 57899999999999999999999987654
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.00094 Score=39.22 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=26.9
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|+.|+|......-
T Consensus 65 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 65 LSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp SSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 57899999996 99999999999998776543
No 42
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.00071 Score=39.39 Aligned_cols=29 Identities=10% Similarity=0.368 Sum_probs=25.7
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+||+.+|.|+.|+|.++..
T Consensus 53 ~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 53 GDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp SSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 57899999999999999999999986543
No 43
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.07 E-value=0.00052 Score=40.23 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=25.9
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+||+.+|.|+.|+|.....
T Consensus 66 ~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 66 ESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp SSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred CCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 57899999999999999999999986653
No 44
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.00052 Score=41.37 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=25.0
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR 30 (69)
++++++++||+||+++|.||.|+|.+..
T Consensus 63 ~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 63 ATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 5789999999999999999999997654
No 45
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.06 E-value=0.0011 Score=38.49 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=27.1
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|+.|+|.......
T Consensus 58 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 58 KKPEQAQKALKQLQGHTVDGHKLEVRISERAT 89 (98)
T ss_dssp SSHHHHHHHHHHSTTCEETTEECEEECSSCSS
T ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEEccCCC
Confidence 47899999996 99999999999998776654
No 46
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.0023 Score=38.04 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=28.4
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG 35 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG 35 (69)
++++++++||+ ||+.+|.|+.|+|.....+.|-
T Consensus 64 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 64 EQSIEAVQAISMFNGQLLFDRPMHVKMDERALPK 97 (114)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECSCCCCC
T ss_pred CCHHHHHHHHHHhCCCEeCCCEEEEEEcccCCCC
Confidence 57899999996 9999999999999987766543
No 47
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.05 E-value=0.0006 Score=38.31 Aligned_cols=29 Identities=28% Similarity=0.459 Sum_probs=25.7
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
++++++++|++ ||+.+|.|+.|+|...+.
T Consensus 51 ~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 51 TSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 57899999996 999999999999987654
No 48
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.05 E-value=0.00057 Score=39.99 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=26.3
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++|| +||+.+|.|+.|+|...+..
T Consensus 64 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 64 PDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 5789999999 59999999999999877654
No 49
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.04 E-value=0.0012 Score=38.65 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=26.4
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++|| +||+.+|.|+.|+|...+..
T Consensus 57 ~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 57 EKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp SSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 5789999999 59999999999999877654
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.0011 Score=38.84 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=26.6
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+.+|.|+.|+|......
T Consensus 63 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 63 YEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred CCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 57899999996 9999999999999887763
No 51
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.03 E-value=0.00036 Score=38.78 Aligned_cols=26 Identities=8% Similarity=0.141 Sum_probs=23.6
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEee
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNP 28 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~ 28 (69)
++++++++||+||+.+|.|+.|+|..
T Consensus 49 ~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 49 ESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp SCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 47899999999999999999999964
No 52
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.0012 Score=38.77 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=27.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|+.|+|.......
T Consensus 65 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 65 HRREDAARAIAGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp SSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred CCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence 57899999996 99999999999999877654
No 53
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.02 E-value=0.00054 Score=39.39 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=25.5
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+ ||+.+|.|+.|+|...++
T Consensus 65 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 65 ENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 57899999996 999999999999987653
No 54
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.01 E-value=0.00092 Score=38.83 Aligned_cols=28 Identities=21% Similarity=0.378 Sum_probs=25.1
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KR 30 (69)
++++++++|| .||+.+|.|+.|+|....
T Consensus 65 ~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 65 ESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 5789999999 599999999999998765
No 55
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.01 E-value=0.00087 Score=40.09 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=28.1
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P 34 (69)
++++++++||+ ||+.+|.|+.|+|.......+
T Consensus 65 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 65 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 97 (115)
T ss_dssp SSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEccCCCC
Confidence 57899999995 999999999999998876654
No 56
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.00 E-value=0.0015 Score=38.24 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=26.8
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+.+|.|+.|+|......
T Consensus 61 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 61 ASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 57899999996 9999999999999987654
No 57
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.00 E-value=0.00078 Score=39.20 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=28.2
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~P 34 (69)
++++++++|| +||+.+|.|+.|+|......-+
T Consensus 58 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 58 MFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp SSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 5789999999 6999999999999998877654
No 58
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.00 E-value=0.00075 Score=38.94 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=27.0
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|++|+|....+..
T Consensus 48 ~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 48 LNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp SCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 57899999996 99999999999998876543
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.00065 Score=39.10 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K 29 (69)
++++++++||+ ||+.+|.|++|+|...
T Consensus 66 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 66 LDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp SCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 57899999995 9999999999999865
No 60
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.99 E-value=0.0015 Score=38.38 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=27.2
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|+.|+|.......
T Consensus 63 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 63 ENSADADRAREKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence 57899999996 99999999999999877654
No 61
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.98 E-value=0.00093 Score=38.46 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=26.7
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+.+|.|+.|+|......
T Consensus 51 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 51 EKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 57899999996 9999999999999987654
No 62
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.97 E-value=0.00088 Score=40.71 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=26.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+.+|.|++|+|......
T Consensus 53 ~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 53 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 57899999995 9999999999999876654
No 63
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.96 E-value=0.00065 Score=38.46 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=25.2
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+ ||+.+|.|+.|+|.....
T Consensus 56 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 56 FNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 57899999996 999999999999987653
No 64
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.96 E-value=0.00062 Score=40.10 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=27.6
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P 34 (69)
++++++++||+ ||+.+|.|+.|+|....+..|
T Consensus 73 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 73 ETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 105 (106)
T ss_dssp SCHHHHHHHHHHHTTCBSSSSBCEEEESEESSC
T ss_pred CCHHHHHHHHHHhcCCEECCcEEEEEeecCCCC
Confidence 57899999996 999999999999998776543
No 65
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.96 E-value=0.0014 Score=38.98 Aligned_cols=32 Identities=6% Similarity=0.199 Sum_probs=27.7
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P 34 (69)
++++++++||+ ||+.+|.|+.|+|.......+
T Consensus 75 ~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 75 PNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp SSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 57899999995 999999999999998776543
No 66
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.95 E-value=0.00062 Score=39.05 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=27.2
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|+.|+|...+...
T Consensus 56 ~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 56 ESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp SSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 57899999996 99999999999999877654
No 67
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.94 E-value=0.0006 Score=41.76 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.6
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEee
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNP 28 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~ 28 (69)
+++++|++|+ +|||..|.||+|+|..
T Consensus 67 ~~~~~A~~Ai~~lnG~~f~GR~i~v~~ 93 (105)
T 3v4m_A 67 TSVFDCQKAMQGLTGRKFANRVVVTKY 93 (105)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 5789999999 5999999999999974
No 68
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.94 E-value=0.00059 Score=39.36 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=25.0
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR 30 (69)
++++++++||+ ||+.+|.|+.|+|...+
T Consensus 65 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 65 KHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp SSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 47889999996 99999999999998665
No 69
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.93 E-value=0.00098 Score=38.97 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=26.9
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++|| +||+.+|.|++|+|......-
T Consensus 62 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 62 ENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp SSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 5789999999 599999999999998876544
No 70
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.90 E-value=0.0011 Score=38.57 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=26.9
Q ss_pred cCHHHHHHHHH-ccCCeee--CceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFR--GRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~fr--GR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|. |+.|+|...+...
T Consensus 61 ~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 61 ESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 57899999996 9999999 9999999776543
No 71
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.89 E-value=0.0017 Score=38.68 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=27.3
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++|| .||+.+|.|+.|+|...+...
T Consensus 69 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 69 STHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 5789999999 599999999999999877654
No 72
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.88 E-value=0.00067 Score=42.51 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=27.9
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P 34 (69)
++++++++||+ ||+.+|.|++|+|....+..|
T Consensus 96 ~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~p 128 (129)
T 2kxn_B 96 ENVDDAKEAKERANGMELDGRRIRVDFSITKRP 128 (129)
T ss_dssp SCHHHHHHHHHHHTTCCSSSSCCEESCCSSSSC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 57899999996 999999999999988776554
No 73
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.87 E-value=0.0012 Score=38.56 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=26.0
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++|| .||+.+|.|+.|+|......
T Consensus 66 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 96 (100)
T 2do4_A 66 ENESQASQAVMKMDGMTIKENIIKVAISNSG 96 (100)
T ss_dssp SSHHHHHHHHHHHTTEESSSCEEEEEECCCC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 5789999999 59999999999999876543
No 74
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=96.86 E-value=0.0018 Score=38.72 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=27.1
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++|| .||+.+|.|+.|+|...+...
T Consensus 75 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 75 DNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence 5789999999 599999999999999877554
No 75
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.85 E-value=0.0012 Score=38.48 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=26.2
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+.+|.|+.|+|.....+
T Consensus 52 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 52 RDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 57899999995 9999999999999877654
No 76
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.84 E-value=0.0011 Score=39.42 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=27.6
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P 34 (69)
++++++++||+ ||+.+|.|+.|+|......-|
T Consensus 76 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 76 ETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence 57899999996 999999999999998776543
No 77
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=96.83 E-value=0.0013 Score=40.97 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=28.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P 34 (69)
++.++|++||+ ||+.+|.|+.|+|...++..|
T Consensus 100 ~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 100 PNEKAAAKALKEANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp SSHHHHHHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 57899999996 999999999999998887654
No 78
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.82 E-value=0.00094 Score=41.30 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.7
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~K 29 (69)
++++++++||+||+.+|.||.|+|.+.
T Consensus 64 ~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 64 LSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp SSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 578999999999999999999999765
No 79
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=96.81 E-value=0.0013 Score=38.95 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=26.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+.+|.|+.|+|...+.+
T Consensus 65 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 65 DNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp SSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 57899999996 9999999999999877653
No 80
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.81 E-value=0.0015 Score=38.19 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=26.8
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++|| .||+.+|.|+.|+|......-
T Consensus 59 ~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 59 ETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp SSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 4678999999 599999999999999877643
No 81
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.80 E-value=0.0023 Score=37.56 Aligned_cols=32 Identities=9% Similarity=0.268 Sum_probs=27.8
Q ss_pred cCHHHHHHHHH-c-cCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAMA-M-DESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~-L-n~s~frGR~IkV~~KRtN~P 34 (69)
++++++++||+ | |+.+|.|+.|+|.......+
T Consensus 66 ~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 66 ITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT 99 (107)
T ss_dssp SSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred CCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence 57899999995 8 99999999999998877654
No 82
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.80 E-value=0.001 Score=38.92 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.2
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K 29 (69)
++++++++||+ ||+.+|.|+.|+|...
T Consensus 71 ~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 71 DDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp SSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 57899999995 9999999999999754
No 83
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.78 E-value=0.00097 Score=40.89 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=24.5
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~K 29 (69)
+++++|++||+||+.+|.||.|+|...
T Consensus 69 ~~~~~a~~Al~~~g~~~~gr~i~V~~a 95 (118)
T 2db1_A 69 ESEDDVKLALKKDRESMGHRYIEVFKS 95 (118)
T ss_dssp SSHHHHHHHGGGTTEEETTEEEEEEEE
T ss_pred CCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 578999999999999999999999754
No 84
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.77 E-value=0.00086 Score=39.64 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=25.8
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+||+.+|.|+.|+|.....
T Consensus 69 ~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 69 EDLDSLLSALSLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp CCHHHHHHHHHTTTCCBTTBCCCCEECCC
T ss_pred CCHHHHHHHHhcCCCEECCeEEEEEeccC
Confidence 57899999999999999999999987653
No 85
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.75 E-value=0.0014 Score=37.89 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=25.5
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+ ||+.+|.|+.|+|.....
T Consensus 62 ~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 62 SSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 57899999996 999999999999987654
No 86
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.00094 Score=39.09 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=25.4
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRt 31 (69)
++.+++++|| .||+.+|.|+.|+|...+.
T Consensus 71 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 71 DTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 5789999999 5999999999999987654
No 87
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=96.74 E-value=0.00057 Score=38.79 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=22.6
Q ss_pred cCHHHHHHHHH-ccCCeeeCc-eeEEe
Q psy13491 3 AKRDEVQTAMA-MDESLFRGR-QIKVN 27 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR-~IkV~ 27 (69)
++++++++||+ ||+.+|.|+ +|+|+
T Consensus 55 ~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 55 ASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp SSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 57899999996 999999999 99984
No 88
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.74 E-value=0.0012 Score=41.46 Aligned_cols=33 Identities=30% Similarity=0.602 Sum_probs=29.1
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG 35 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG 35 (69)
++++++++||+ ||+.+|.|+.|+|...+...|.
T Consensus 97 ~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 97 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp SCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 57899999995 9999999999999988876654
No 89
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.74 E-value=0.0016 Score=37.82 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=27.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCce----eEEeeCccCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQ----IKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~----IkV~~KRtN~P 34 (69)
++++++++||+ ||+.+|.|+. |+|...+..-|
T Consensus 60 ~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 60 ADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSGP 96 (99)
T ss_dssp SCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCSS
T ss_pred CCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCCC
Confidence 57899999997 9999999999 99987765543
No 90
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.73 E-value=0.0012 Score=37.93 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=24.0
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K 29 (69)
++++++++||+ ||+.+|.|+.|+|...
T Consensus 65 ~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 65 ESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 57899999996 9999999999999753
No 91
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.72 E-value=0.0011 Score=40.25 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=27.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+..|.|+.|+|.....++
T Consensus 54 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 54 LEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp SCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 57899999995 99999999999999877654
No 92
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.70 E-value=0.0018 Score=37.37 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=26.4
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++|++ ||+..|.|+.|+|......
T Consensus 59 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 59 KEVSSATNALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred CCHHHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence 47899999996 9999999999999877654
No 93
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.70 E-value=0.0015 Score=40.10 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.8
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR 30 (69)
++++++++|++ |||..|.||+|+|....
T Consensus 64 ~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 64 ERVESAIKAVVDLNGRYFGGRVVKACFYN 92 (105)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 57899999995 99999999999998654
No 94
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.68 E-value=0.00077 Score=40.95 Aligned_cols=29 Identities=3% Similarity=0.059 Sum_probs=26.1
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
+++++|++||++|+.+|.|+.|+|..+..
T Consensus 60 ~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 60 DSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp SSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 57899999999999999999999987654
No 95
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=96.67 E-value=0.0013 Score=41.37 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=24.1
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K 29 (69)
++++++++|+. |||..|.||+|+|..-
T Consensus 63 ~~~e~A~~Ai~~lnG~~f~GR~i~v~~~ 90 (114)
T 3s6e_A 63 PSIAAAIAAVNALHGRWFAGKMITAAYV 90 (114)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEE
Confidence 57899999995 9999999999999754
No 96
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.67 E-value=0.0024 Score=37.38 Aligned_cols=30 Identities=7% Similarity=0.196 Sum_probs=26.2
Q ss_pred cCHHHHHHHHH-ccCCe-eeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESL-FRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~-frGR~IkV~~KRtN 32 (69)
++++++++||+ ||++. |.|+.|+|......
T Consensus 59 ~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~ 90 (104)
T 2dhg_A 59 TDELEQKRALTECQGAVGLGSKPVRLSVAIPK 90 (104)
T ss_dssp SCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCC
T ss_pred CCHHHHHHHHHHccCCcccCCEeEEEEEccCC
Confidence 57899999996 99999 99999999876543
No 97
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.67 E-value=0.00073 Score=41.37 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=24.5
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~K 29 (69)
+++++|++||+||+.+|.|+.|+|.+.
T Consensus 75 ~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 75 RNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp SSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 578899999999999999999999864
No 98
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0011 Score=38.73 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=27.5
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|+.|+|.....+.
T Consensus 53 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 53 DNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp SCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 57899999996 99999999999999887654
No 99
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.66 E-value=0.0015 Score=37.78 Aligned_cols=29 Identities=7% Similarity=0.181 Sum_probs=25.6
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+ ||+.+|.|+.|+|.....
T Consensus 61 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 61 KSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp SSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 57899999996 999999999999987653
No 100
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.65 E-value=0.00096 Score=40.06 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR 30 (69)
++++++++||+ ||+.+|.|+.|+|..++
T Consensus 90 ~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 90 DNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp ESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 47789999996 99999999999998764
No 101
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.65 E-value=0.0018 Score=39.20 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=26.8
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++.+++++||+ ||+.+|.|+.|+|...+...
T Consensus 73 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 73 EEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 57899999996 99999999999998776543
No 102
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.65 E-value=0.0016 Score=36.70 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.7
Q ss_pred cCHHHHHHHHH-c-cCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-M-DESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-L-n~s~frGR~IkV~~KR 30 (69)
++++++++||+ | |+.+|.|+.|+|...+
T Consensus 56 ~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 56 ATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 57899999996 8 9999999999998653
No 103
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.65 E-value=0.0015 Score=40.86 Aligned_cols=33 Identities=30% Similarity=0.602 Sum_probs=28.5
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG 35 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG 35 (69)
+++++++.||+ ||+.+|.|+.|+|.......|.
T Consensus 120 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 120 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp SBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 57899999995 9999999999999988766543
No 104
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.64 E-value=0.0017 Score=37.94 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=26.4
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+..|.|+.|+|......
T Consensus 58 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 58 QDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp SCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred CCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 57899999995 9999999999999877654
No 105
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.64 E-value=0.0026 Score=37.12 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=27.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.+|.|+.|+|.......
T Consensus 45 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 45 EDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp SSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 57899999996 99999999999999877654
No 106
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.63 E-value=0.0015 Score=38.78 Aligned_cols=28 Identities=0% Similarity=0.081 Sum_probs=24.8
Q ss_pred cCHHHHHHHHH-ccCCeeeC-ceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFRG-RQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frG-R~IkV~~KR 30 (69)
++++++++||+ ||+.+|.| ++|+|....
T Consensus 62 ~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~ 91 (100)
T 3ns6_A 62 GSMNDAKKIIKSFHGKRLDLKHRLFLYTMK 91 (100)
T ss_dssp SSHHHHHHHHHHHTTCBSSSSCBCEEEESH
T ss_pred CCHHHHHHHHHHhCCcccCCCeEEEEEECc
Confidence 57899999995 99999999 999998653
No 107
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.63 E-value=0.0013 Score=37.34 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=23.5
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEee
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNP 28 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~ 28 (69)
++++++++||++|+.+|.|+.|+|..
T Consensus 61 ~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 61 KDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp SSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 47889999999999999999999964
No 108
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.60 E-value=0.0013 Score=40.08 Aligned_cols=26 Identities=15% Similarity=0.469 Sum_probs=23.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNP 28 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~ 28 (69)
++++++++|+. |||..|.||+|+|..
T Consensus 76 ~~~~~A~~A~~~lng~~~~Gr~i~v~~ 102 (104)
T 1jmt_A 76 RREEDAEKAVIDLNNRWFNGQPIHAEL 102 (104)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCHHHHHHHHHHHCCCEECCEEEEEEE
Confidence 57899999995 999999999999963
No 109
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.55 E-value=0.002 Score=37.87 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=24.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K 29 (69)
++++++++||+ ||+.+|.|+.|+|...
T Consensus 78 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 78 ERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 57899999996 9999999999999754
No 110
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.55 E-value=0.0017 Score=40.90 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=23.5
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNP 28 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~ 28 (69)
++++++++|+. |||..|.||+|+|..
T Consensus 79 ~~~e~A~~Ai~~LnGr~f~GR~i~v~~ 105 (118)
T 3ue2_A 79 SIASETHKAIQALNGRWFAGRKVVAEV 105 (118)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCHHHHHHHHHHHCCCEECCcEEEEEE
Confidence 57899999995 999999999999974
No 111
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.54 E-value=0.0017 Score=39.26 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=25.6
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||++|+.+|.|+.|+|.....
T Consensus 65 ~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 65 KNEDDARKSERLHRKKLNGREAFVHVVTL 93 (114)
T ss_dssp SSHHHHHHHGGGCSEEETTEEEEEEEECH
T ss_pred CCHHHHHHHHHhCCCccCCeEEEEEECCH
Confidence 57899999999999999999999976543
No 112
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=96.52 E-value=0.0012 Score=39.59 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=25.0
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR 30 (69)
++++++++||+||++.|.||.|+|....
T Consensus 63 ~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 63 ESEQDVQKALEKHRMYMGQRYVEVYEIN 90 (107)
T ss_dssp SSHHHHHHHHTTTTCCSSSSCCCCEECC
T ss_pred CCHHHHHHHHHhCcceeCCeEEEEEECC
Confidence 5789999999999999999999997643
No 113
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.52 E-value=0.002 Score=40.83 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=26.2
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN 32 (69)
+++++|++|| .||+.+|.|++|+|....+.
T Consensus 80 ~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 80 ATQESAQAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp SSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred CCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence 5789999999 59999999999999876653
No 114
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=96.51 E-value=0.0014 Score=42.03 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=24.7
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~K 29 (69)
+++++|++||+||+++|.||.|+|...
T Consensus 96 ~~~e~a~~Al~~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 96 GSEDDVKMALKKDRESMGHRYIEVFKS 122 (136)
T ss_dssp SSHHHHHHHHTTTEEESSSSEEEEEEC
T ss_pred CCHHHHHHHHhcCCCEECCEEEEEEEC
Confidence 578999999999999999999999754
No 115
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.50 E-value=0.0018 Score=41.02 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=29.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPGI 36 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG~ 36 (69)
++.+++++|++ ||+.+|-||+|+|....++--=+
T Consensus 54 ~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 54 INQDSAERAQKRMENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp SSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred CCHHHHHHHHHHhcCCccCCceEEEEecCCCccee
Confidence 57899999995 99999999999999888775444
No 116
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.50 E-value=0.0027 Score=38.37 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.9
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KR 30 (69)
++++++++|| .||+..|.|++|+|....
T Consensus 72 ~~~~~A~~Ai~~lng~~~~gr~l~v~~a~ 100 (112)
T 2dit_A 72 RDPEEADYCIQTLDGRWFGGRQITAQAWD 100 (112)
T ss_dssp SCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5789999999 599999999999998754
No 117
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=95.47 E-value=0.00046 Score=41.60 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=25.8
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
+++++|++||+ ||+.+|.|+.|+|......
T Consensus 65 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 65 DDPPSAKAAIDWFDGKEFSGNPIKVSFATRR 95 (116)
Confidence 47889999996 9999999999999876643
No 118
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=96.39 E-value=0.0024 Score=39.75 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=24.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K 29 (69)
.++++++.|++ ||++++.|++|+|...
T Consensus 51 ~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 51 TTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 57899999995 9999999999999765
No 119
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.39 E-value=0.0026 Score=38.26 Aligned_cols=29 Identities=21% Similarity=0.404 Sum_probs=25.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
++++++++|++ ||+.+|.|+.|+|.....
T Consensus 77 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 77 ENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46789999996 999999999999987653
No 120
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.38 E-value=0.0054 Score=35.86 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=27.4
Q ss_pred cCHHHHHHHHH-ccCCeeeC---ceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRG---RQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frG---R~IkV~~KRtN~P 34 (69)
++++++++||+ ||+.+|.| +.|+|.......+
T Consensus 64 ~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 64 SSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp SSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred CCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 57899999995 99999999 9999988776543
No 121
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.37 E-value=0.003 Score=41.53 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=24.9
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR 30 (69)
++++++++||+ ||+.+|.|++|+|....
T Consensus 151 ~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 151 ETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 57899999995 99999999999998654
No 122
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=96.37 E-value=0.0037 Score=38.54 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=26.4
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+||+.+|.|++|+|......
T Consensus 59 ~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 59 RSVDETTQAMAFDGIIFQGQSLKIRRPHDY 88 (172)
T ss_dssp SSHHHHHHHGGGTTCEETTEECEEECCSSC
T ss_pred CCHHHHHHHHHhCCcEecCceeeecCCccc
Confidence 578999999999999999999999865543
No 123
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.37 E-value=0.003 Score=40.94 Aligned_cols=28 Identities=18% Similarity=0.476 Sum_probs=24.9
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR 30 (69)
+++++|++||+ ||+.+|.|+.|+|....
T Consensus 107 ~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~ 135 (156)
T 3n9u_C 107 ASENSVHKLLELLPGKVLNGEKVDVRPAT 135 (156)
T ss_dssp SCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence 57899999996 89999999999998664
No 124
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.36 E-value=0.0014 Score=39.15 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=25.4
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+||+.+|.|+.|+|.....
T Consensus 75 ~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 75 CEIQSVPLAIGLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp SCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred CcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence 46789999999999999999999987543
No 125
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.34 E-value=0.0006 Score=38.70 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=24.4
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR 30 (69)
++++++++||+ ||+.+|.|+.|+|...+
T Consensus 55 ~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 55 DSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp SCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 57899999996 99999999999997543
No 126
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.33 E-value=0.0032 Score=39.20 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=25.8
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+||+.+|.|++|+|.....
T Consensus 62 ~~~~~a~~A~~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 62 ESAEDLEKALELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp SSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred CCHHHHHHHHhcCCCEeCCeEEEEecCCC
Confidence 57899999999999999999999986553
No 127
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.32 E-value=0.0027 Score=38.29 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=24.9
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR 30 (69)
++++++++||+ ||+..|.|+.|+|....
T Consensus 76 ~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 76 SDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp SCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 57899999995 99999999999998654
No 128
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.32 E-value=0.0064 Score=36.35 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.6
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||++|+.+|.|+.|+|.....
T Consensus 77 ~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 77 SSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp SSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 57899999998899999999999987654
No 129
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.32 E-value=0.004 Score=38.60 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=26.4
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN 32 (69)
++.+++++|| +||+.+|.|+.|+|......
T Consensus 81 ~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 81 EKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp SSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 5789999999 59999999999999877654
No 130
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.31 E-value=0.007 Score=35.43 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=26.4
Q ss_pred cCHHHHHHHHH-ccCCee---eCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLF---RGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~f---rGR~IkV~~KRtN~ 33 (69)
++++++++||+ ||+.++ .|+.|+|......-
T Consensus 63 ~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 63 CERESALKAQSALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp SSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred CCHHHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence 57899999995 999998 99999998776543
No 131
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.28 E-value=0.005 Score=39.25 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=28.8
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPGI 36 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG~ 36 (69)
++.+++++||+ ||+.+|.|+.|+|....+-.+..
T Consensus 175 ~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 175 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp SSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred cCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 47899999996 99999999999999877754443
No 132
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=96.26 E-value=0.0019 Score=35.62 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=23.4
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEee
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNP 28 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~ 28 (69)
++++++++||++|+.+|.|++|+|..
T Consensus 49 ~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 49 KEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp SSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 47889999999999999999999964
No 133
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=96.26 E-value=0.0029 Score=39.86 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=26.9
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN~ 33 (69)
+++++|++||+||+.+|.|+.|+|.......
T Consensus 59 ~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 59 RSVDETTQAMAFDGIIFQGQSLKIRRPHDYQ 89 (198)
T ss_dssp SCSHHHHHHGGGTTEEETTEEEEEECCCCCC
T ss_pred CCHHHHHHHHHhcCCEEcCceEEEeCCCCCC
Confidence 4789999999999999999999998766543
No 134
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.25 E-value=0.015 Score=34.70 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=24.7
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+ +|.|+.|+|......
T Consensus 67 ~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 67 ADRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp SSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred CCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 57899999996 777 999999999987653
No 135
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.0043 Score=37.68 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=24.8
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR 30 (69)
+++++++.||+ ||+..|.|+.|+|....
T Consensus 137 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 137 TSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 47899999996 99999999999998653
No 136
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=96.21 E-value=0.002 Score=38.38 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=24.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCc-eeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGR-QIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR-~IkV~~KR 30 (69)
++++++++||. ||+.+|.|+ +|+|....
T Consensus 69 ~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 69 ASPAHAVDAVKNADGYKLDKQHTFRVNLFT 98 (105)
T ss_dssp CSSSHHHHHHHHCSSEECSTTCEEEEECSC
T ss_pred CCHHHHHHHHHHhCCcccCCCceEEEEEcc
Confidence 46788999996 999999999 99998654
No 137
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.18 E-value=0.0045 Score=37.52 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=26.0
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+.+|.|+.|+|......
T Consensus 84 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 84 ERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp SSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 57899999996 9999999999999876543
No 138
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.17 E-value=0.0041 Score=37.04 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=25.2
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR 30 (69)
++++++++||+ ||+.+|.|+.|+|....
T Consensus 55 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 55 EDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp SSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 57899999996 99999999999998765
No 139
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.15 E-value=0.0034 Score=37.31 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=24.3
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~K 29 (69)
++++++++||++|+++|.||.|+|.+.
T Consensus 65 ~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 65 ASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 578999999988999999999999754
No 140
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.13 E-value=0.0034 Score=38.54 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR 30 (69)
++++++++||+||+..|.|++|+|....
T Consensus 137 ~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 137 DSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp SSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred CCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 4789999999999999999999998654
No 141
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=96.12 E-value=0.0045 Score=41.31 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=25.7
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
+++++|++||+ ||+.+|.|++|+|...+.
T Consensus 50 ~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 50 ADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 57899999996 999999999999997653
No 142
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.12 E-value=0.0097 Score=34.97 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=26.2
Q ss_pred cCHHHHHHHHH-cc------CCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MD------ESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln------~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ || +.+|.|+.|+|......
T Consensus 65 ~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 65 MTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR 101 (111)
T ss_dssp SSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred CCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCC
Confidence 57899999995 99 99999999999877654
No 143
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.11 E-value=0.0048 Score=39.43 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=27.5
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP 34 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P 34 (69)
++.+++++||+ ||+..|.|+.|+|.......|
T Consensus 122 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 122 ETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 47899999995 999999999999998876654
No 144
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.05 E-value=0.0038 Score=37.98 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=23.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNP 28 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~ 28 (69)
++++++++||+ ||+.+|.|+.|+|..
T Consensus 113 ~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 113 ELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 57899999995 999999999999964
No 145
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.04 E-value=0.0047 Score=38.41 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=25.1
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR 30 (69)
++++++++||+ ||+.+|.|++|+|....
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 144 KSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp SSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 57899999996 99999999999998654
No 146
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=95.99 E-value=0.004 Score=37.46 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=24.6
Q ss_pred cCHHHHHHHHH-ccCC----eeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDES----LFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s----~frGR~IkV~~KRt 31 (69)
++++++++||+ ||++ .+.||+|+|..+++
T Consensus 61 ~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 61 SSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp SSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 47789999995 9997 48999999997764
No 147
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=95.98 E-value=0.0031 Score=35.97 Aligned_cols=30 Identities=30% Similarity=0.543 Sum_probs=22.6
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++ +++|++ ||+.+|.|+.|+|.......
T Consensus 51 ~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 51 QEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp CTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred CCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 3566 889995 99999999999998776543
No 148
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.95 E-value=0.0074 Score=35.49 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=25.7
Q ss_pred cCHHHHHHHHH-cc--CCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MD--ESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln--~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ || +.+|.|+.|+|......
T Consensus 60 ~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 60 ESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPE 92 (109)
T ss_dssp SSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSS
T ss_pred cCHHHHHHHHHHhhCCCceecCCeEEEEEcCCC
Confidence 57899999996 86 59999999999987654
No 149
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.94 E-value=0.007 Score=38.02 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=25.0
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||++|+.+|.|+.|+|......
T Consensus 154 ~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 154 DDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp SSHHHHHHHHHCSCCEETTEECEEEECC--
T ss_pred CCHHHHHHHHHhCCcEECCEEEEEEecCCh
Confidence 478999999988999999999999866543
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.92 E-value=0.0061 Score=38.07 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=25.4
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+ ||+.+|.|+.|+|.....
T Consensus 118 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 118 EDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 57899999996 999999999999987543
No 151
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.80 E-value=0.0066 Score=35.59 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=24.9
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||++|+.+|.|+.|+|.....
T Consensus 66 ~~~~~a~~a~~~~~~~~~g~~l~V~~a~~ 94 (105)
T 2dh8_A 66 KDPNCVGTVLASRPHTLDGRNIDPKPCTP 94 (105)
T ss_dssp SSTTHHHHHHHHCSEEETTEEEBCCCSCC
T ss_pred CCHHHHHHHHHhCCCeECCEEEEEEEccC
Confidence 46789999998899999999999976553
No 152
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=95.72 E-value=0.0055 Score=37.76 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=23.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNP 28 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~ 28 (69)
++++++++|++ ||+.+|.|++|+|..
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 144 VDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp SSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 46789999996 999999999999974
No 153
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=95.58 E-value=0.0076 Score=37.92 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=25.8
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+..|.|+.|+|......
T Consensus 164 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 164 VDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp SSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 46788999996 9999999999999876653
No 154
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=95.48 E-value=0.015 Score=35.19 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=26.2
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+..|.|+.|+|......
T Consensus 52 ~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 52 IDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 57899999996 9999999999999877643
No 155
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.46 E-value=0.007 Score=33.32 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=21.7
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNP 28 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~ 28 (69)
++++++++||+ || .+|.|++|+|..
T Consensus 50 ~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 50 MDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred cCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 47889999997 66 999999999974
No 156
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=95.46 E-value=0.011 Score=34.47 Aligned_cols=28 Identities=7% Similarity=0.099 Sum_probs=22.9
Q ss_pred cCHHHHHHHHH-c-cCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-M-DESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-L-n~s~frGR~IkV~~KR 30 (69)
+++++|++||+ | |+.+|.|++|+|....
T Consensus 52 ~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 52 SHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp SSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred cCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 57899999996 6 4568999999998654
No 157
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=95.45 E-value=0.0041 Score=39.64 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=24.0
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~K 29 (69)
+++++|++||++|+.+|.||.|+|.+.
T Consensus 92 ~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 92 ASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 478899999998999999999999754
No 158
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=95.44 E-value=0.013 Score=38.83 Aligned_cols=30 Identities=3% Similarity=0.041 Sum_probs=26.4
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN 32 (69)
+++++|++||++++.+|.|+.|+|.+|.+.
T Consensus 158 ~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 158 DSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp SSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred CCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 578999999997778999999999988764
No 159
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.39 E-value=0.011 Score=37.70 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=26.2
Q ss_pred cCHHHHHHHHH-ccCCeee-CceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFR-GRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~fr-GR~IkV~~KRtN 32 (69)
++++++++||+ ||+..|. |++|+|...+..
T Consensus 166 ~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 166 GSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 57899999996 9999999 999999876643
No 160
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=95.33 E-value=0.015 Score=38.46 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=26.5
Q ss_pred cCHHHHHHHHH-ccCCeee-CceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFR-GRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~fr-GR~IkV~~KRtN 32 (69)
++++++++||+ ||+..|. |++|+|...+..
T Consensus 197 ~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 197 GSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 57899999996 9999999 999999987654
No 161
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=95.30 E-value=0.022 Score=34.16 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=24.8
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+.++.+|.|+.|+|.....
T Consensus 75 ~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 75 MDQAGVDKVLAQSRHELDSKTIDPKVAFP 103 (109)
T ss_dssp SSHHHHHHHHHSSCEEETTEEEEEEECCC
T ss_pred CCHHHHHHHHHHCCCcCCCEEEEEEEccC
Confidence 57899999998667999999999986653
No 162
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.29 E-value=0.0087 Score=37.74 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=24.2
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~K 29 (69)
++++++++||++|+++|.+|.|+|.+.
T Consensus 76 ~~~~~A~~Al~~~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 76 ACEEYAQNALRKHKDLLGKRYIELFRS 102 (123)
T ss_dssp SSHHHHHHHHTTTTEESSSCEECCEEE
T ss_pred CCHHHHHHHHHhCCCeeCCeEEEEEEC
Confidence 578999999999999999999999754
No 163
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.023 Score=34.38 Aligned_cols=31 Identities=10% Similarity=0.212 Sum_probs=26.6
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++|+ .||+..+.|+.|+|.......
T Consensus 49 ~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 49 HQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 4789999999 699999999999998765443
No 164
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=95.27 E-value=0.011 Score=38.94 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=23.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNP 28 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~ 28 (69)
++++++++|+. |||..|.||+|.|..
T Consensus 183 ~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 183 SIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp SSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 57899999995 999999999999874
No 165
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.15 E-value=0.013 Score=35.96 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=24.7
Q ss_pred cCHHHHHHHHH-ccC--CeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDE--SLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~--s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+ .+|.|++|+|...++.
T Consensus 60 ~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 60 ATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp SSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 57899999995 885 4699999999877653
No 166
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=95.10 E-value=0.012 Score=38.59 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=25.5
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+ ||+.+|.|++|+|...-+
T Consensus 137 ~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 137 ERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp SCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 57899999996 999999999999987654
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.08 E-value=0.027 Score=34.36 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=25.6
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
++++++++|++ ||+..|.|+.|+|.....
T Consensus 53 ~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 53 TSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 47899999996 999999999999987654
No 168
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=95.08 E-value=0.018 Score=38.81 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=25.7
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+||+..|.|+.|+|.....
T Consensus 262 ~~~~~A~~A~~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 262 ENKDSAERALQMNRSLLGNREISVSLADK 290 (292)
T ss_dssp SSHHHHHHHGGGTTEEETTEEEEEEECCC
T ss_pred CCHHHHHHHHHhcCCEECCcEEEEEEecC
Confidence 57899999999999999999999987653
No 169
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.07 E-value=0.02 Score=36.47 Aligned_cols=29 Identities=17% Similarity=0.088 Sum_probs=24.5
Q ss_pred cCHHHHHHHHH-ccCCeeeC--ceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRG--RQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frG--R~IkV~~KRt 31 (69)
+++++|++|++ |||.+|.| +.|+|...+.
T Consensus 70 ~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 70 ESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp SSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred CCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 57899999995 99999988 6899986654
No 170
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=95.03 E-value=0.021 Score=38.32 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=26.7
Q ss_pred cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++|| +||+.+|.|+.|+|.......
T Consensus 60 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 60 KEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred CCHHHHHHHHHHhcCCeeCCcEEEEEEeccCc
Confidence 5789999999 599999999999998775543
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=94.96 E-value=0.022 Score=38.22 Aligned_cols=28 Identities=7% Similarity=0.089 Sum_probs=24.9
Q ss_pred cCHHHHHHHHH-ccCCeee-CceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLFR-GRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~fr-GR~IkV~~KR 30 (69)
++.+++++||+ ||+.+|. |+.|+|...+
T Consensus 252 ~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 252 DNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 57899999996 9999999 9999998654
No 172
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=94.85 E-value=0.019 Score=36.53 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=26.0
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+..|.|+.|+|......
T Consensus 49 ~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 49 ADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp TTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 47899999996 9999999999999876644
No 173
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=94.82 E-value=0.021 Score=34.86 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=23.0
Q ss_pred cCHHHHHHHHH-ccCCeeeC--ceeEEee
Q psy13491 3 AKRDEVQTAMA-MDESLFRG--RQIKVNP 28 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frG--R~IkV~~ 28 (69)
+++++++.|++ ||+..|.| ++|+|..
T Consensus 139 ~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 139 NKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp SSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 57899999996 99999988 9999964
No 174
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=94.82 E-value=0.019 Score=35.28 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=26.6
Q ss_pred CHHHHHHHHH-ccCC----eeeCceeEEeeCccCCCCCC
Q psy13491 4 KRDEVQTAMA-MDES----LFRGRQIKVNPKRTNRPGIS 37 (69)
Q Consensus 4 ~~~sv~~Al~-Ln~s----~frGR~IkV~~KRtN~PG~~ 37 (69)
++ ++++||+ ||+. +|.|+.|+|...+...+.+.
T Consensus 76 ~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~~~~ 113 (131)
T 2m2b_A 76 TI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMA 113 (131)
T ss_dssp HH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCCCCC
T ss_pred CH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCCCCC
Confidence 45 8889985 9999 99999999998876555443
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=94.74 E-value=0.025 Score=37.43 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=26.2
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
+++++|++||+ ||+.+|.|+.|+|...+..
T Consensus 80 ~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 80 ADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp SCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 57899999996 9999999999999876643
No 176
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.71 E-value=0.031 Score=35.34 Aligned_cols=32 Identities=9% Similarity=0.040 Sum_probs=26.7
Q ss_pred cCHHHHHHHHH-ccCCee-----eCceeEEeeCccCCCC
Q psy13491 3 AKRDEVQTAMA-MDESLF-----RGRQIKVNPKRTNRPG 35 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~f-----rGR~IkV~~KRtN~PG 35 (69)
++++++++|++ |||++| .|++|.|.... ++|=
T Consensus 71 ~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~-~~p~ 108 (114)
T 2cq2_A 71 RTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE-KVQW 108 (114)
T ss_dssp SSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES-CCCC
T ss_pred CCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc-cCcc
Confidence 57899999995 999999 79999998766 5553
No 177
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=94.60 E-value=0.028 Score=37.86 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=25.3
Q ss_pred cCHHHHHHHHH-ccCCeeeC--ceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRG--RQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frG--R~IkV~~KRt 31 (69)
++++++++|++ |||.+|.| +.|+|...+.
T Consensus 92 ~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 92 ADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp SCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 57899999995 99999966 9999987765
No 178
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.59 E-value=0.023 Score=35.42 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=24.3
Q ss_pred cCHHHHHHHHH-cc--CCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MD--ESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln--~s~frGR~IkV~~KRt 31 (69)
++++++++||+ || +.+|.|++|+|.....
T Consensus 60 ~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 60 NTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp SSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 57899999996 76 4799999999987654
No 179
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=94.46 E-value=0.041 Score=36.87 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=26.1
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ ||+..|.|+.|+|......
T Consensus 234 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 234 ETAEMAEEAQQQADGLSLGGSHLRVSFCAPG 264 (284)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred CCHHHHHHHHHHhCCCccCCeEEEEEEecCC
Confidence 57899999996 9999999999999876543
No 180
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=94.35 E-value=0.048 Score=35.24 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=25.5
Q ss_pred cCHHHHHHHHH-ccCCeeeC--ceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRG--RQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frG--R~IkV~~KRt 31 (69)
++++++++|++ |||.+|.| +.|+|...+.
T Consensus 74 ~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 74 ADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp SCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 57899999995 99999999 9999987665
No 181
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=94.27 E-value=0.048 Score=34.11 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=25.7
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
+++++|++||++|+.+|.|+.|+|.....
T Consensus 63 ~~~~~A~~A~~~~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp SSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred CCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence 57899999999999999999999987644
No 182
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.20 E-value=0.048 Score=32.22 Aligned_cols=28 Identities=0% Similarity=0.125 Sum_probs=22.1
Q ss_pred cCHHHHHHHHH-ccCCee--------eCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESLF--------RGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~f--------rGR~IkV~~KR 30 (69)
++++++++||+ ||+.+| .+++|+|....
T Consensus 74 ~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 74 ESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp SCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred CCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 57899999996 999999 46667776443
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=94.19 E-value=0.035 Score=37.35 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=25.6
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
+++++|++||+||+..|.|+.|.|.+...
T Consensus 89 ~~~~~A~~A~~~~~~~~~g~~i~v~~~~~ 117 (292)
T 2ghp_A 89 ARYDGALAAITKTHKVVGQNEIIVSHLTE 117 (292)
T ss_dssp SSHHHHHHHHTTTTCEETTEECEEEECCS
T ss_pred CCHHHHHHHHHhCCcEeCCcEEEEEECCC
Confidence 57899999999999999999999976543
No 184
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.11 E-value=0.1 Score=30.18 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=23.8
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+ ++.+|.|+.|+|.....
T Consensus 65 ~~~~~a~~A~~-~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 65 TEYETQVKVMS-QRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp SSHHHHHHHHH-SCEEETTEEEEEECCCT
T ss_pred CCHHHHHHHHH-cCCeeCCeEEEEEecCC
Confidence 57899999998 57899999999987654
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=94.05 E-value=0.031 Score=35.53 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.5
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNP 28 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~ 28 (69)
++++++++||+ ||++.|.|+.|+|..
T Consensus 78 ~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 78 EVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp SSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred CCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 47899999997 999999999999954
No 186
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=93.84 E-value=0.04 Score=34.09 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=23.4
Q ss_pred cCHHHHHHHHH-ccCCe--eeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMA-MDESL--FRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~--frGR~IkV~~KR 30 (69)
++++++++||+ ||+.. +.|++|.|....
T Consensus 65 ~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 65 EDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp SSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 57899999995 99875 789999998654
No 187
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=93.72 E-value=0.048 Score=32.94 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.2
Q ss_pred cCHHHHHHHHH-ccCCeeeCce--eEEe
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQ--IKVN 27 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~--IkV~ 27 (69)
++++++++|++ ||+..|.|+. |+|.
T Consensus 138 ~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 138 DKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp SSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 57899999996 9999999987 5554
No 188
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.71 E-value=0.051 Score=34.37 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=24.2
Q ss_pred cCHHHHHHHHH-cc--CCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MD--ESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln--~s~frGR~IkV~~KRt 31 (69)
+++++|++||+ || +.+|.|++|+|.....
T Consensus 75 ~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 75 NTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp SCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 57899999996 77 4689999999987654
No 189
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.67 E-value=0.076 Score=32.12 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=24.7
Q ss_pred cCHHHHHHHHH-c--cCCeeeCceeEEeeCccC
Q psy13491 3 AKRDEVQTAMA-M--DESLFRGRQIKVNPKRTN 32 (69)
Q Consensus 3 a~~~sv~~Al~-L--n~s~frGR~IkV~~KRtN 32 (69)
++++++++||+ | |+.+|.|++|+|......
T Consensus 59 ~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 59 ATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 57889999995 5 578999999999877654
No 190
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.53 E-value=0.041 Score=36.22 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=18.7
Q ss_pred CHHHHH-HHHHccCCeeeCceeEEee
Q psy13491 4 KRDEVQ-TAMAMDESLFRGRQIKVNP 28 (69)
Q Consensus 4 ~~~sv~-~Al~Ln~s~frGR~IkV~~ 28 (69)
|..++- ++|+|||++|.||+|+|..
T Consensus 71 d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 71 DSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp CHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cchhhHHHHhhcCCeeecCeEEEecC
Confidence 444444 4458999999999999853
No 191
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.36 E-value=0.05 Score=33.03 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=23.7
Q ss_pred cCHHHHHHHHH-ccC--CeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDE--SLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~--s~frGR~IkV~~KRt 31 (69)
++++++++||+ ||+ .+|.|++|+|.....
T Consensus 59 ~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 59 ENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp SSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred CCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 57899999996 765 469999999987654
No 192
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.29 E-value=0.04 Score=34.54 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=23.6
Q ss_pred cCHHHHHHHHH-cc--CCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MD--ESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln--~s~frGR~IkV~~KRt 31 (69)
++++++++||+ || +.+|.||+|+|.....
T Consensus 70 ~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 70 ETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 57899999995 75 4679999999987654
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=93.27 E-value=0.082 Score=35.38 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=25.3
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+ ||+..|.|+.|+|....+
T Consensus 65 ~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 94 (284)
T 3smz_A 65 LNGEQAEAAINAFHQSRLRERELSVQLQPT 94 (284)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHHHHcCCCeeCCeEEEEEecCC
Confidence 57899999995 999999999999987543
No 194
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=92.87 E-value=0.11 Score=33.91 Aligned_cols=29 Identities=10% Similarity=0.347 Sum_probs=25.2
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
++++++++||+ ||+..+.|+.|+|.....
T Consensus 65 ~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 65 QQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 57899999995 999999999999986643
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=92.73 E-value=0.11 Score=35.02 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=25.6
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt 31 (69)
+++++|++||+ ||+..|.|+.|+|.....
T Consensus 66 ~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 66 ESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 57899999996 999999999999987653
No 196
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=92.54 E-value=0.1 Score=31.79 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=22.3
Q ss_pred cCHHHHHHHH-HccCCeee---CceeEEeeC
Q psy13491 3 AKRDEVQTAM-AMDESLFR---GRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al-~Ln~s~fr---GR~IkV~~K 29 (69)
+++++++.|| +||+..+. ++.|+|...
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 5789999999 59998776 499999753
No 197
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=91.86 E-value=0.035 Score=32.24 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=22.6
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKR 30 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR 30 (69)
++++++++||+ |+.+|.|+.|.|...-
T Consensus 58 ~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 58 YNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp SSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 46778999999 9999999999986543
No 198
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.81 E-value=0.12 Score=36.31 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=25.3
Q ss_pred cCHHHHHHHHH-ccCCee------------eCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMA-MDESLF------------RGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~f------------rGR~IkV~~KRtN~ 33 (69)
++.++|+.|++ ||+++| .|+.|.|.......
T Consensus 187 ~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 187 KYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp SSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 47899999995 999999 99999999887643
No 199
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=88.06 E-value=0.33 Score=32.32 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=21.8
Q ss_pred HHHHHH---ccCCeeeCceeEEeeCccCC
Q psy13491 8 VQTAMA---MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 8 v~~Al~---Ln~s~frGR~IkV~~KRtN~ 33 (69)
+..||+ ||++.|.|+.|+|...+.++
T Consensus 69 A~kAi~~~~lng~~I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 69 AFSAVRKHESSGCFIMGFKFEVILNKHSI 97 (136)
T ss_dssp HHHHHHHTTTTCEEETTEEEEEEECCTTH
T ss_pred HHHHHHHhhhcCCeecCcEEEEEECcccH
Confidence 788875 89999999999999776653
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.59 E-value=1.4 Score=26.61 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=23.1
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCccCC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN~ 33 (69)
++++++++||+. ...+.+++|+|...+...
T Consensus 62 ~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 62 ATVKAAELAVQN-EVGLVDNPLKISWLEGQP 91 (100)
T ss_dssp SCHHHHHHHHHT-CCBCSSSBCEEECSSCCC
T ss_pred CCHHHHHHHHHh-cCCCCCCeEEEEEccCCC
Confidence 578899999973 344789999998776554
No 201
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.32 E-value=0.61 Score=27.69 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=14.0
Q ss_pred cCHHHHHHHHH-ccCCeeeCceeEE
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQIKV 26 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~IkV 26 (69)
+++++|++||+ |+ .+.|+.|.|
T Consensus 60 ~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 60 QEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCHHHHHHHHHhhh--hcCCcEEEe
Confidence 57899999995 62 244444433
No 202
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=86.01 E-value=0.68 Score=27.99 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=23.0
Q ss_pred cCHHHHHHHHH-ccCCeee---CceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFR---GRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~fr---GR~IkV~~KRt 31 (69)
++++++++||+ ||+..+. ++.|.|.+...
T Consensus 55 ~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~ 87 (175)
T 3nmr_A 55 YTRKAALEAQNALHNMKVLPGMHHPIQMKPADS 87 (175)
T ss_dssp SSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGG
T ss_pred CCHHHHHHHHHHhcCcEEccCCccceEEccccc
Confidence 57899999995 9998876 67788876553
No 203
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=84.96 E-value=0.8 Score=30.23 Aligned_cols=21 Identities=0% Similarity=0.230 Sum_probs=18.6
Q ss_pred cCHHHHHHHHH-ccCCeeeCce
Q psy13491 3 AKRDEVQTAMA-MDESLFRGRQ 23 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~frGR~ 23 (69)
++.+++.+||+ ||++++.|+.
T Consensus 173 ~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 173 DSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp SSHHHHHHHHHHHTTCEECCSS
T ss_pred CCHHHHHHHHHHhCCCCccCCC
Confidence 57899999995 9999999984
No 204
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=83.50 E-value=0.78 Score=30.75 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=22.6
Q ss_pred cCHHHHHHHHH-ccCCeee----CceeEEeeCcc
Q psy13491 3 AKRDEVQTAMA-MDESLFR----GRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~fr----GR~IkV~~KRt 31 (69)
++.+++.+||. ||+..|- +++|.|.+...
T Consensus 145 ~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 145 AAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp SSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred CCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 57899999995 8655554 99999987653
No 205
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.80 E-value=0.84 Score=29.03 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=21.2
Q ss_pred CHHHHHHHH-HccCCeeeCceeEEeeCc
Q psy13491 4 KRDEVQTAM-AMDESLFRGRQIKVNPKR 30 (69)
Q Consensus 4 ~~~sv~~Al-~Ln~s~frGR~IkV~~KR 30 (69)
++++|.+|- +|+++.|.|..|+|.-..
T Consensus 55 ~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 55 NPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp STTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred ChHHHHHHHHHhccceecCceeEEEecC
Confidence 455666665 699999999999998655
No 206
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=79.76 E-value=1.1 Score=27.02 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=21.3
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~K 29 (69)
++++++++||+ +..++.|+.|.|...
T Consensus 53 ~~~~~a~~A~~-~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 53 EKPSSVDEVVK-TQHILDGKVIDPKRA 78 (167)
T ss_dssp SSTHHHHHHHH-SCCEETTEECCCEEC
T ss_pred ccHHHHHHHHh-cccccCCeEcccccc
Confidence 47789999998 467999999998754
No 207
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=79.58 E-value=0.37 Score=29.77 Aligned_cols=28 Identities=4% Similarity=0.119 Sum_probs=23.7
Q ss_pred ccCHHHHHHHHH-c-cCCeeeCceeEEeeCc
Q psy13491 2 KAKRDEVQTAMA-M-DESLFRGRQIKVNPKR 30 (69)
Q Consensus 2 ~a~~~sv~~Al~-L-n~s~frGR~IkV~~KR 30 (69)
.++++++++||+ | |++++.| .|.|....
T Consensus 20 ~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 20 AVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp CSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred ecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 368899999994 9 9999999 99997554
No 208
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.47 E-value=2.4 Score=23.56 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=16.9
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt 31 (69)
++++++++|+.. +..+.|+.|+|.....
T Consensus 50 ~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 50 ADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp SCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 356666544322 2455899999976543
No 209
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=75.42 E-value=2.5 Score=27.89 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.7
Q ss_pred cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491 3 AKRDEVQTAMAMDESLFRGRQIKVNPK 29 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frGR~IkV~~K 29 (69)
+++.+++.||..||++|.|-.|=|.|=
T Consensus 70 ds~~~A~rAL~~NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 70 DNPASAVDALLENGAVFNGVLLGVIPY 96 (132)
T ss_dssp SSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHHhCCeEeCcEEEEEEEC
Confidence 578999999999999999998877764
No 210
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=60.84 E-value=9.8 Score=21.50 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=15.9
Q ss_pred CHHHHHHHHHccCCeee--CceeEEeeCc
Q psy13491 4 KRDEVQTAMAMDESLFR--GRQIKVNPKR 30 (69)
Q Consensus 4 ~~~sv~~Al~Ln~s~fr--GR~IkV~~KR 30 (69)
++++|+ +||+..+. |+.|.|....
T Consensus 57 ~~~~A~---~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 57 DDKVAQ---SLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp CHHHHH---HHTTCEEEETTEEEEEEECC
T ss_pred CHHHHH---HHcCCCcccCCEEEEEEEcC
Confidence 455555 46666654 8999887654
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=58.93 E-value=8.9 Score=24.63 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.0
Q ss_pred cCHHHHHHHHHccCCeeeC-ceeEEee
Q psy13491 3 AKRDEVQTAMAMDESLFRG-RQIKVNP 28 (69)
Q Consensus 3 a~~~sv~~Al~Ln~s~frG-R~IkV~~ 28 (69)
+++.+++.||..|++.|.+ -.|=|.|
T Consensus 67 ~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 67 QSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp SSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 5788999999999999985 4566655
No 212
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=58.83 E-value=7.3 Score=28.53 Aligned_cols=18 Identities=11% Similarity=0.147 Sum_probs=15.7
Q ss_pred cCHHHHHHHHH-ccCCeee
Q psy13491 3 AKRDEVQTAMA-MDESLFR 20 (69)
Q Consensus 3 a~~~sv~~Al~-Ln~s~fr 20 (69)
++++++++||+ |||+++-
T Consensus 64 ~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 64 RTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSHHHHHHHHHHTTTCEEE
T ss_pred CCHHHHHHHHHHhCCCccc
Confidence 57899999995 9999884
No 213
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=49.80 E-value=5 Score=22.40 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=16.4
Q ss_pred HHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491 6 DEVQTAMA-MDESLFRGRQIKVNPKR 30 (69)
Q Consensus 6 ~sv~~Al~-Ln~s~frGR~IkV~~KR 30 (69)
+.++.+++ |++...+|+.|+|.+.+
T Consensus 50 ~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 50 GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred HHHHHHHHHhccccCcCceEEEEECC
Confidence 45667774 89999999999987654
No 214
>2iec_A Uncharacterized protein conserved in archaea; tetramer with intra-molecular and inter-molecular disufide bonds, structural genomics, PSI-2; 2.33A {Methanopyrus kandleri} SCOP: d.316.1.1
Probab=47.88 E-value=11 Score=24.90 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=23.3
Q ss_pred ccCHHHHHHHHH--ccCCeeeCceeEEeeCccCC
Q psy13491 2 KAKRDEVQTAMA--MDESLFRGRQIKVNPKRTNR 33 (69)
Q Consensus 2 ~a~~~sv~~Al~--Ln~s~frGR~IkV~~KRtN~ 33 (69)
.++.+++++||+ +..+.|. |+|..+++-+
T Consensus 37 ~eta~sLE~AIE~si~~QP~v---v~V~I~~d~l 67 (131)
T 2iec_A 37 PGTAEEVAKCIERAALLQPCV---IDARVEVDVS 67 (131)
T ss_dssp GGGHHHHHHHHHHHHTTSTTE---EEEEEEECCC
T ss_pred cccHHHHHHHHHHHHhcCCeE---EEEEecHHHh
Confidence 468899999994 8889999 8888776544
No 215
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.30 E-value=32 Score=21.65 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=17.7
Q ss_pred HHHHHHHHH-cc--CCeeeCceeEEe
Q psy13491 5 RDEVQTAMA-MD--ESLFRGRQIKVN 27 (69)
Q Consensus 5 ~~sv~~Al~-Ln--~s~frGR~IkV~ 27 (69)
++++++|+. || +.++++..++|.
T Consensus 66 ~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 66 AKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp HHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred hHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 677888884 85 678999888875
No 216
>2w2s_A Matrix protein; viral assembly, viral morphogenesis, polymer, viral protein, VSV; 2.75A {Lagos bat virus}
Probab=27.01 E-value=31 Score=23.98 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=18.3
Q ss_pred cCCeeeCceeEEeeCccCCCC
Q psy13491 15 DESLFRGRQIKVNPKRTNRPG 35 (69)
Q Consensus 15 n~s~frGR~IkV~~KRtN~PG 35 (69)
|++||-|-||.|+.+--.|-|
T Consensus 146 ddsefvglqirvsarqchiqg 166 (202)
T 2w2s_A 146 DEAEFVSLQIRVSAKQCHIQG 166 (202)
T ss_dssp ETTEEEEEEEEEEEEECSSCC
T ss_pred CCcceeeeEEEEehhheeecc
Confidence 679999999999988877765
Done!