RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13491
(69 letters)
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 29.3 bits (65), Expect = 0.013
Identities = 1/27 (3%), Positives = 8/27 (29%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPK 29
+ + + ++ + + K
Sbjct: 55 DSIESAKKFVETPGQKYKETDLLILFK 81
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 28.4 bits (63), Expect = 0.026
Identities = 3/25 (12%), Positives = 6/25 (24%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVN 27
+ V +A + I
Sbjct: 50 MDQAGVDKVLAQSRHELDSKTIDPK 74
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 28.2 bits (62), Expect = 0.029
Identities = 2/25 (8%), Positives = 7/25 (28%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVN 27
D V+ + + ++
Sbjct: 49 ESEDIVEKVCEIHFHEINNKMVECK 73
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 27.8 bits (61), Expect = 0.047
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVN 27
+D + A+ M+ SL R+I V+
Sbjct: 56 ENKDSAERALQMNRSLLGNREISVS 80
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 26.7 bits (58), Expect = 0.16
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNRP 34
+ A+ D F+G ++KV+ R P
Sbjct: 66 EDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 98
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 26.1 bits (57), Expect = 0.17
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVN 27
+ + V M E G+ I
Sbjct: 49 KESESVDKVMDQKEHKLNGKVIDPK 73
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 26.2 bits (57), Expect = 0.24
Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 5 RDEVQTAMAMDESLFRGRQIKVN---PKRTNRPGIST 38
D + +A++++E ++I+V+ + G S+
Sbjct: 67 LDSLLSALSLNEESLGNKRIRVDVADQAQDKDSGPSS 103
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 25.6 bits (56), Expect = 0.27
Identities = 3/31 (9%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTN 32
+ + + A+ M+ + +G+ +++ + +
Sbjct: 50 QQPADAERALDTMNFDVIKGKPVRIMWSQRD 80
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.8 bits (56), Expect = 0.27
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVNP-KRTNRP 34
K ++ Q A+ + G +++V +R +P
Sbjct: 51 KKPEQAQKALKQLQGHTVDGHKLEVRISERATKP 84
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 25.5 bits (55), Expect = 0.28
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVN 27
D V + G +V
Sbjct: 52 DDHDSVDKIVIQKYHTVNGHNCEVR 76
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 26.1 bits (56), Expect = 0.36
Identities = 4/24 (16%), Positives = 6/24 (25%)
Query: 5 RDEVQTAMAMDESLFRGRQIKVNP 28
D V + G +V
Sbjct: 149 HDSVDKIVIQKYHTVNGHNCEVRK 172
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 24.9 bits (54), Expect = 0.44
Identities = 2/25 (8%), Positives = 8/25 (32%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVN 27
+ + V+ M + ++
Sbjct: 49 KEEEPVKKIMEKKYHNVGLSKCEIK 73
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 25.2 bits (55), Expect = 0.46
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVN---PKRTNRPGIST 38
+ A+ D + G+ + +N + NR G S+
Sbjct: 58 VNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRSGPSS 97
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.1 bits (54), Expect = 0.62
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVNP--KRTNRPGISTTNRGGP 44
++ +AM ++ F GR ++V+ N+ + + G P
Sbjct: 58 QDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAP 102
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 24.9 bits (54), Expect = 0.63
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNRPG 35
R + + AM ++ + R I+ + + G
Sbjct: 57 YSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 90
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 24.7 bits (53), Expect = 0.68
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPR 45
A ++ AMA D++ + R +++ T + T+ GP
Sbjct: 63 ATHEDAVAAMAKDKANMQHRYVELFLNST-----AGTSGSGPS 100
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 24.6 bits (53), Expect = 0.72
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNRPG 35
+ Q A+ ++ R +++KV+ RPG
Sbjct: 52 TSEMDSQRAIKVLNGITVRNKRLKVSYA---RPG 82
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 24.2 bits (52), Expect = 0.96
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNRP 34
++ A+ M+ES GR I+VN + R
Sbjct: 55 ELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI 87
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 24.3 bits (52), Expect = 0.98
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKR 30
+ + A+ ++ + + IKV+ R
Sbjct: 52 IDPKDAEKAINTLNGLRLQTKTIKVSYAR 80
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 24.3 bits (52), Expect = 1.1
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 1 MKAKRDEVQTAMAMDESLFRGRQIKVNPKRTNRP 34
DE AMA D +F+G+ +K+ +P
Sbjct: 54 EFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP 87
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 24.4 bits (52), Expect = 1.1
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRG 50
D+ + + + GR+ V+ + + P G
Sbjct: 58 KNEDDARKSERLHRKKLNGREAFVHV--VTLEDMREIEKNPPAQGKSG 103
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 24.5 bits (52), Expect = 1.2
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVNP--KRTNRPGISTTNRGGPRGRGRGRV 52
Q A+ ++ +++KV RPG G G G G +
Sbjct: 92 QSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPG-----IAGAVGDGNGYL 139
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 23.7 bits (51), Expect = 1.2
Identities = 4/26 (15%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVN 27
++ + AM + GR + +
Sbjct: 49 ERKADALKAMKQYNGVPLDGRPMNIQ 74
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 23.8 bits (51), Expect = 1.3
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVN 27
A +EV AM GR ++
Sbjct: 56 ATVEEVDAAMNARPHKVDGRVVEPK 80
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 23.4 bits (50), Expect = 2.0
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 5 RDEVQTAM-AMDESLFRGRQIKVN---PKRTN 32
++ A+ MD G+ I+VN N
Sbjct: 61 EEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 92
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 23.4 bits (50), Expect = 2.1
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVN 27
R + A +D RG+Q++V
Sbjct: 52 ETRTLAEIAKVELDNMPLRGKQLRVR 77
>d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus
[TaxId: 53502]}
Length = 132
Score = 23.6 bits (51), Expect = 2.1
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 41 RGGPRGRGRGRVSRGAAMYGGYRPVR 66
G GRG + Y R
Sbjct: 54 YAQTDGHGRGYIFLDYQQNQQYDSTR 79
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 23.5 bits (50), Expect = 2.3
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNPK------RTNRPGIS 37
A R + A + GR+ VN R+ + G +
Sbjct: 60 ADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFA 100
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 23.4 bits (50), Expect = 2.5
Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNP--KRTNR 33
+ V A+ + G I V NR
Sbjct: 68 CEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNR 100
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 23.1 bits (49), Expect = 2.6
Identities = 4/29 (13%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 5 RDEVQTAM-AMDESLFRGRQIKVNPKRTN 32
A+ +M F + +++ +T+
Sbjct: 56 VSSATNALRSMQGFPFYDKPMRIQYAKTD 84
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 22.9 bits (48), Expect = 2.8
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 4/49 (8%)
Query: 1 MKAKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGR 49
K D +D + FR + + R R GR R
Sbjct: 42 FVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD----GPRSPSYGRSR 86
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 23.1 bits (49), Expect = 2.9
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNRPGISTTNRGGPR 45
+ A +D +F+GR + V P + ++ GP
Sbjct: 58 MFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA----SQSGPS 97
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 23.1 bits (49), Expect = 3.0
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVN 27
+ A A++ + G+ I+V+
Sbjct: 57 ETHKQALAAKEALNGAEIMGQTIQVD 82
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 23.1 bits (49), Expect = 3.3
Identities = 4/35 (11%), Positives = 10/35 (28%), Gaps = 4/35 (11%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVN---PKRTNR 33
+ + + + GR + + K R
Sbjct: 61 KSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGTR 95
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 23.0 bits (48), Expect = 3.4
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 5 RDEVQTAMAMDESLFRGRQIKVNPKRT 31
++++ A+ + G +IK+ +
Sbjct: 64 AEDLEKALELTGLKVFGNEIKLEKPKG 90
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 22.7 bits (48), Expect = 4.0
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNP 28
+ EV AMA GR ++
Sbjct: 70 SSMAEVDAAMAARPHSIDGRVVEPKR 95
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 22.8 bits (48), Expect = 4.1
Identities = 3/45 (6%), Positives = 11/45 (24%)
Query: 1 MKAKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPR 45
M ++ G+ I++ + + +
Sbjct: 47 MADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQG 91
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 22.7 bits (48), Expect = 4.1
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKV 26
D+ + A + GR+I+V
Sbjct: 59 ENVDDAKEAKERANGMELDGRRIRV 83
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 22.7 bits (48), Expect = 4.6
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 31 TNRPGISTTNRGGPRGRGRGRVSR 54
PGI T N + R +
Sbjct: 255 IFPPGIVTMNEYSVPKTLQARFVK 278
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767
{Haemophilus influenzae [TaxId: 727]}
Length = 183
Score = 22.9 bits (48), Expect = 4.6
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 19 FRGRQIKVNPKRTNRPGISTTNR 41
+RGR++ V RP T +R
Sbjct: 10 WRGRKLPVLNSEGLRP---TGDR 29
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 22.3 bits (47), Expect = 4.6
Identities = 3/29 (10%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKR 30
+R++ A+ + + + V +
Sbjct: 58 HRREDAARAIAGVSGFGYDHLILNVEWAK 86
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 22.3 bits (47), Expect = 4.8
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 5 RDEVQTAM-AMDESLFRGRQIKVN---PK-RTN 32
+ A + ++ GR+I+VN + TN
Sbjct: 61 SADADRAREKLHGTVVEGRKIEVNNATARVMTN 93
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 22.5 bits (47), Expect = 5.0
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 5 RDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG 42
++ + A+ + R I++ S + G
Sbjct: 67 QEIAEKALKKHKERIGHRYIEIFKSSRAEVRTSGPSSG 104
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 22.2 bits (47), Expect = 5.0
Identities = 3/30 (10%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 6 DEVQTAM-AMDESLFRGRQIKVNPKRTNRP 34
+ A+ +++ + G +K + +
Sbjct: 65 ESAAHAIVSVNGTTIEGHVVKCYWGKESPD 94
>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452
{Enterococcus faecalis [TaxId: 1351]}
Length = 182
Score = 22.5 bits (47), Expect = 5.2
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 19 FRGRQIKVNPKRTNRPGISTTNR 41
+ GR++K RP TT++
Sbjct: 8 YGGRRLKALDGDNTRP---TTDK 27
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 22.3 bits (47), Expect = 5.3
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR 33
Q A+ +M+ +++KV KR+
Sbjct: 68 DNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 99
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate
uridylyltransferase {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 173
Score = 22.4 bits (47), Expect = 5.6
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 19 FRGRQIKVNPKRTNRP 34
R + +P R RP
Sbjct: 8 VTNRWVIFSPARAKRP 23
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 22.4 bits (47), Expect = 5.7
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 5 RDEVQTAM-AMDESLFRGRQIKVNPKRTNRPGISTTNRG 42
++ Q A+ + FRG+ + V + T+ S + G
Sbjct: 50 GEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCSGPSSG 88
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa
subunit, Orc1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 217
Score = 22.6 bits (48), Expect = 6.0
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 11 AMAMDESL--FRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVSRGAAM 58
AM M ++L +G +I ++ N I + R + +
Sbjct: 1 AMTMAKTLKDLQGWEIITTDEQGNI--IDGGQKRLRRRGAKTEHYLKRSS 48
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 21.9 bits (46), Expect = 6.4
Identities = 2/26 (7%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 3 AKRDEVQTAM-AMDESLFRGRQIKVN 27
+ A+ ++ +++ V
Sbjct: 51 VDINVTDQAIAGLNGMQLGDKKLLVQ 76
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 22.0 bits (46), Expect = 7.3
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 1 MKAKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG 42
K D +D++ FR + + + R S + G
Sbjct: 57 YLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSSGPSSG 98
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 22.1 bits (46), Expect = 8.1
Identities = 1/27 (3%), Positives = 7/27 (25%), Gaps = 1/27 (3%)
Query: 5 RDEVQTAM-AMDESLFRGRQIKVNPKR 30
++ + + + + P
Sbjct: 69 TEKCEAVIGHFNGKFIKTPPGVSAPTE 95
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 21.8 bits (45), Expect = 9.0
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 3 AKRDEVQTAMAMDESLFRGRQIKVNP 28
+ + A+ + R I+V+P
Sbjct: 68 RNEADYKAALCRHKQYMGNRFIQVHP 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 242,018
Number of extensions: 8700
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 63
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)