BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13494
         (143 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K3J|A Chain A, The Solution Structure Of Human Mia40
          Length = 146

 Score =  122 bits (307), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 70/107 (65%), Gaps = 5/107 (4%)

Query: 1   MSTCQREGKDFIIFATKEDH-----AXXXXXXXXXXXXXXXXXXXDGSINWNCPCLGGMA 55
           MS C++EGKD IIF TKEDH     A                   +G+INWNCPCLGGMA
Sbjct: 5   MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMA 64

Query: 56  TGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQ 102
           +GPCG QF+ AFSCFHYST+E KG +C + F+ MQ+CM +YP LY Q
Sbjct: 65  SGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQ 111


>pdb|2L0Y|A Chain A, Complex Hmia40-Hcox17
          Length = 146

 Score =  120 bits (300), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 69/107 (64%), Gaps = 5/107 (4%)

Query: 1   MSTCQREGKDFIIFATKEDH-----AXXXXXXXXXXXXXXXXXXXDGSINWNCPCLGGMA 55
           MS C++EGKD IIF TKEDH     A                   +G+INWN PCLGGMA
Sbjct: 5   MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNSPCLGGMA 64

Query: 56  TGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQ 102
           +GPCG QF+ AFSCFHYST+E KG +C + F+ MQ+CM +YP LY Q
Sbjct: 65  SGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQ 111


>pdb|2ZXT|A Chain A, Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY SYSTEM
           IN Mitochondria, Solved As Mbp Fusion Protein
          Length = 465

 Score = 96.7 bits (239), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/61 (62%), Positives = 46/61 (75%)

Query: 42  GSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYK 101
           G INW+CPCLGGMA GPCG +F+ AFSCF YS  EPKG++C E F+ MQDC  +YP  Y 
Sbjct: 390 GEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYA 449

Query: 102 Q 102
           +
Sbjct: 450 E 450


>pdb|3A3C|A Chain A, Crystal Structure Of Tim40MIA40 FUSING MBP, C296S AND
           C298S Mutant
          Length = 451

 Score = 90.1 bits (222), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 44/61 (72%)

Query: 42  GSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYK 101
           G INW+ P LGGMA GPCG +F+ AFSCF YS  EPKG++C E F+ MQDC  +YP  Y 
Sbjct: 388 GEINWDSPSLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYA 447

Query: 102 Q 102
           +
Sbjct: 448 E 448


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,263,398
Number of Sequences: 62578
Number of extensions: 92022
Number of successful extensions: 127
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 5
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)