Query psy13494
Match_columns 143
No_of_seqs 102 out of 174
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 20:48:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k3j_A Mitochondrial intermemb 100.0 6.5E-57 2.2E-61 350.4 2.1 113 1-113 5-122 (146)
2 2zxt_A Maltose-binding peripla 100.0 2.7E-35 9.4E-40 245.7 5.1 82 31-112 379-460 (465)
3 1fiz_L Beta-acrosin light chai 38.4 5.4 0.00018 23.0 -0.4 10 56-65 7-16 (26)
4 2lql_A Coiled-coil-helix-coile 36.5 21 0.00072 25.8 2.4 21 80-100 59-79 (113)
5 1fiw_L Beta-acrosin light chai 35.3 6.4 0.00022 22.7 -0.4 10 56-65 6-15 (26)
6 2kra_A Prokineticin BV8; beta 34.1 24 0.00084 23.8 2.3 16 40-55 51-66 (77)
7 3s2k_C Dickkopf-related protei 33.1 13 0.00043 26.9 0.8 13 43-55 58-70 (97)
8 1ei0_A P8MTCP1; helix-turn-hel 32.8 51 0.0017 19.6 3.4 37 58-96 2-38 (38)
9 1imt_A MIT1, intestinal toxin 32.7 25 0.00087 24.0 2.2 17 39-55 50-66 (80)
10 2lqt_A Coiled-coil-helix-coile 30.1 41 0.0014 23.8 3.0 40 57-98 14-53 (85)
11 1u96_A Cytochrome C oxidase co 29.9 32 0.0011 23.6 2.3 36 59-96 26-61 (69)
12 2lql_A Coiled-coil-helix-coile 29.5 21 0.00073 25.7 1.5 36 58-95 60-95 (113)
13 1lpb_A Colipase; hydrolase(car 29.4 20 0.00068 25.9 1.3 14 41-55 55-68 (95)
14 1dj7_A Ferredoxin thioredoxin 23.2 19 0.00065 26.7 0.2 22 46-75 72-93 (117)
15 3zxw_B Ribulose bisphosphate c 20.0 45 0.0015 24.6 1.7 21 83-103 67-87 (118)
No 1
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A
Probab=100.00 E-value=6.5e-57 Score=350.42 Aligned_cols=113 Identities=63% Similarity=1.241 Sum_probs=64.9
Q ss_pred CccccccCCceEEEeccCCCCCCCCCCCCCCCC-----CCCCCCCCCcccccCCccCCCCCCCcHHHHhhhhccccccCC
Q psy13494 1 MSTCQREGKDFIIFATKEDHAIPSSVELPPPEP-----QPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTD 75 (143)
Q Consensus 1 ms~~~~egKD~iiFvTkEd~~~Ps~~el~~~~~-----~~G~~~p~GeINwdCPCLggMa~GPCG~eFkeAFSCF~~S~~ 75 (143)
|||||++|||+|||||||||++|++++|++++| ++|+++|||+|||+|||||||++||||++||+|||||+||++
T Consensus 5 msy~r~~gKD~Vif~TkEe~~~ps~~el~~~d~~~~~~~~g~~~p~GeINwdCPClggma~GPCG~eFreAfsCF~~S~~ 84 (146)
T 2k3j_A 5 MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMASGPCGEQFKSAFSCFHYSTE 84 (146)
T ss_dssp ----------------------------------------CCBCTTSSBCTTSHHHHHHTSSSTHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhcCceEEEeCHHHhcCcccccccCCCCCcccccCCccCCCCceeecCCcccccCCCCcHHHHHHHHHhhccCcc
Confidence 999999999999999999999999999998776 579999999999999999999999999999999999999999
Q ss_pred CCCcCchHHHHHHHHHHHHhChhhhCCCCCCCccchhH
Q psy13494 76 EPKGVNCFEAFKTMQDCMAQYPTLYKQNDDDDEDLDDV 113 (143)
Q Consensus 76 e~Kg~dC~e~F~amq~Cm~~~Pd~y~~~~~~~~~~~~~ 113 (143)
++||+||+++|++||+||++||++|+++++++++...+
T Consensus 85 e~Kg~dC~e~F~~mq~Cm~~~P~~y~~~~~~~~~~~~~ 122 (146)
T 2k3j_A 85 EIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEEEREK 122 (146)
T ss_dssp SSTTTTTHHHHHHHHHHHHHCSSCC-------------
T ss_pred ccccchHHHHHHHHHHHHHHChHhhccccccccccccc
Confidence 99999999999999999999999999988777665544
No 2
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=100.00 E-value=2.7e-35 Score=245.71 Aligned_cols=82 Identities=49% Similarity=1.087 Sum_probs=71.9
Q ss_pred CCCCCCCCCCCCcccccCCccCCCCCCCcHHHHhhhhccccccCCCCCcCchHHHHHHHHHHHHhChhhhCCCCCCCccc
Q psy13494 31 PEPQPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQNDDDDEDL 110 (143)
Q Consensus 31 ~~~~~G~~~p~GeINwdCPCLggMa~GPCG~eFkeAFSCF~~S~~e~Kg~dC~e~F~amq~Cm~~~Pd~y~~~~~~~~~~ 110 (143)
..++.|.++|||+|||+||||++|++||||++||+|||||++|++++||+||+++|++||+||++||++|...+.+++++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 458 (465)
T 2zxt_A 379 GRPEFAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDD 458 (465)
T ss_dssp TTGGGGEETTTTEECTTCGGGTTTTSSTTHHHHHHHHHHHHHCCSSSTTGGGHHHHHHHHHHHTTCTTTCCCCCC-----
T ss_pred cccccCCCCCCCeeeecCCccccCCCCCchHHHHHHHHhhhcCccccccchHHHHHHHHHHHHHHCHHHHHHhhhhhhhc
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999988766554
Q ss_pred hh
Q psy13494 111 DD 112 (143)
Q Consensus 111 ~~ 112 (143)
++
T Consensus 459 ~~ 460 (465)
T 2zxt_A 459 EE 460 (465)
T ss_dssp --
T ss_pred cc
Confidence 43
No 3
>1fiz_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NDG FUL BMA PBZ; 2.90A {Sus scrofa} SCOP: b.47.1.2
Probab=38.41 E-value=5.4 Score=23.02 Aligned_cols=10 Identities=60% Similarity=1.630 Sum_probs=8.6
Q ss_pred CCCcHHHHhh
Q psy13494 56 TGPCGVQFRE 65 (143)
Q Consensus 56 ~GPCG~eFke 65 (143)
+||||-.||.
T Consensus 7 dgpCGlrfrq 16 (26)
T 1fiz_L 7 DGPCGLRFRQ 16 (26)
T ss_pred cccccceecc
Confidence 5899999986
No 4
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=36.55 E-value=21 Score=25.77 Aligned_cols=21 Identities=19% Similarity=0.588 Sum_probs=15.5
Q ss_pred CchHHHHHHHHHHHHhChhhh
Q psy13494 80 VNCFEAFKTMQDCMAQYPTLY 100 (143)
Q Consensus 80 ~dC~e~F~amq~Cm~~~Pd~y 100 (143)
..|.++|.+..+||++|..-+
T Consensus 59 ~~C~~ef~~y~~CL~~n~~~~ 79 (113)
T 2lql_A 59 QACAQPFEAFEECLRQNEAAV 79 (113)
T ss_dssp HHTHHHHHHHHHHHHHCTTCT
T ss_pred HHhHHHHHHHHHHHHHccccH
Confidence 467888888888888776544
No 5
>1fiw_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2
Probab=35.26 E-value=6.4 Score=22.68 Aligned_cols=10 Identities=70% Similarity=1.683 Sum_probs=8.6
Q ss_pred CCCcHHHHhh
Q psy13494 56 TGPCGVQFRE 65 (143)
Q Consensus 56 ~GPCG~eFke 65 (143)
.||||-.||.
T Consensus 6 dgpCGlrfrq 15 (26)
T 1fiw_L 6 DGPCGVRFRQ 15 (26)
T ss_pred ccccCceecc
Confidence 5899999986
No 6
>2kra_A Prokineticin BV8; beta strands, beta turn, helix, disulfide bond, secreted, CO protein; NMR {Bombina variegata}
Probab=34.09 E-value=24 Score=23.84 Aligned_cols=16 Identities=25% Similarity=0.717 Sum_probs=12.9
Q ss_pred CCCcccccCCccCCCC
Q psy13494 40 PDGSINWNCPCLGGMA 55 (143)
Q Consensus 40 p~GeINwdCPCLggMa 55 (143)
|...+.|-|||..||.
T Consensus 51 ~g~~~~~~CPC~~GL~ 66 (77)
T 2kra_A 51 DGKRLSSLCPCKSGLT 66 (77)
T ss_dssp SSCCCCSSCCBCTTCC
T ss_pred CCcceeeeCCCCCCCe
Confidence 4456889999999985
No 7
>3s2k_C Dickkopf-related protein 1; WNT CO-receptor, beta-propeller, EGF domain, WNT signaling, inhibitor, glycosylation, signaling protein; HET: NAG FUC; 2.80A {Homo sapiens} PDB: 3s8v_X
Probab=33.12 E-value=13 Score=26.87 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=11.4
Q ss_pred cccccCCccCCCC
Q psy13494 43 SINWNCPCLGGMA 55 (143)
Q Consensus 43 eINwdCPCLggMa 55 (143)
+|.|-|||..||.
T Consensus 58 ~~~~rCPC~~GL~ 70 (97)
T 3s2k_C 58 EIFQRCYCGEGLS 70 (97)
T ss_dssp CSBCCCCBCTTEE
T ss_pred ccceeCCCCCCCe
Confidence 6899999999974
No 8
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=32.76 E-value=51 Score=19.61 Aligned_cols=37 Identities=27% Similarity=0.590 Sum_probs=27.0
Q ss_pred CcHHHHhhhhccccccCCCCCcCchHHHHHHHHHHHHhC
Q psy13494 58 PCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQY 96 (143)
Q Consensus 58 PCG~eFkeAFSCF~~S~~e~Kg~dC~e~F~amq~Cm~~~ 96 (143)
||..+-++-..|.....- .-+.|-.-|.+|++|=.++
T Consensus 2 pC~~~a~a~q~CL~~n~~--d~skCq~~id~l~~Cc~~~ 38 (38)
T 1ei0_A 2 PCQKQAAEIQKCLQANSY--LESKCQAVIQELKKCAAQY 38 (38)
T ss_dssp CSHHHHHHHHHHHHHTTT--CGGGTHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHhcC
Confidence 788887777778875443 3378888899988886654
No 9
>1imt_A MIT1, intestinal toxin 1; venom, structural homologue of colipase, resistance to endoproteases, contract guinea PIG ileum; NMR {Dendroaspis polylepis polylepis} SCOP: g.3.10.1 g.3.10.1
Probab=32.75 E-value=25 Score=23.97 Aligned_cols=17 Identities=24% Similarity=0.747 Sum_probs=13.4
Q ss_pred CCCCcccccCCccCCCC
Q psy13494 39 LPDGSINWNCPCLGGMA 55 (143)
Q Consensus 39 ~p~GeINwdCPCLggMa 55 (143)
+|...+.|-|||..||.
T Consensus 50 ~~g~~~~~~CPC~~GL~ 66 (80)
T 1imt_A 50 FSGQRMHHTCPCAPNLA 66 (80)
T ss_dssp CCSCCCSSCCCBCTTCE
T ss_pred CCCcceeeeCCCCCCCE
Confidence 44457889999999984
No 10
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=30.06 E-value=41 Score=23.83 Aligned_cols=40 Identities=15% Similarity=0.394 Sum_probs=33.1
Q ss_pred CCcHHHHhhhhccccccCCCCCcCchHHHHHHHHHHHHhChh
Q psy13494 57 GPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPT 98 (143)
Q Consensus 57 GPCG~eFkeAFSCF~~S~~e~Kg~dC~e~F~amq~Cm~~~Pd 98 (143)
-||-++=..++-|.....-+ .+.|..-|.+-++|-+.-=.
T Consensus 14 nPC~~e~~~S~kCL~~n~yD--r~~C~~yF~~Yk~CKk~W~~ 53 (85)
T 2lqt_A 14 NPCLSESDASTRCLDENNYD--RERCSTYFLRYKNCRRFWNS 53 (85)
T ss_dssp CCCHHHHHHHHHHHHHTTTC--TTTTHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcCcc--HHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999866543 57999999999999765443
No 11
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=29.95 E-value=32 Score=23.61 Aligned_cols=36 Identities=22% Similarity=0.620 Sum_probs=27.2
Q ss_pred cHHHHhhhhccccccCCCCCcCchHHHHHHHHHHHHhC
Q psy13494 59 CGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQY 96 (143)
Q Consensus 59 CG~eFkeAFSCF~~S~~e~Kg~dC~e~F~amq~Cm~~~ 96 (143)
|-++=+.==-|++.+.++.. .|.+.-.+...||+.|
T Consensus 26 CpetK~aRDeCil~~gee~~--~C~~lIeahk~CMr~~ 61 (69)
T 1u96_A 26 CKPEKEERDTCILFNGQDSE--KCKEFIEKYKECMKGY 61 (69)
T ss_dssp SSHHHHHHHHHHHHSCSCSG--GGHHHHHHHHHHHHTT
T ss_pred CcchhhHHHHHHHhcCCcHH--HHHHHHHHHHHHHHHc
Confidence 44554444579988776542 9999999999999975
No 12
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=29.54 E-value=21 Score=25.72 Aligned_cols=36 Identities=22% Similarity=0.502 Sum_probs=31.6
Q ss_pred CcHHHHhhhhccccccCCCCCcCchHHHHHHHHHHHHh
Q psy13494 58 PCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQ 95 (143)
Q Consensus 58 PCG~eFkeAFSCF~~S~~e~Kg~dC~e~F~amq~Cm~~ 95 (143)
.|+.+|++=-.|.-++..+. ..|.+....|..|..+
T Consensus 60 ~C~~ef~~y~~CL~~n~~~~--~~Cr~~~~~f~~Cae~ 95 (113)
T 2lql_A 60 ACAQPFEAFEECLRQNEAAV--GNCAEHMRRFLQCAEQ 95 (113)
T ss_dssp HTHHHHHHHHHHHHHCTTCT--TTCCSHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHccccH--HHHHHHHHHHHHHHHH
Confidence 59999999999998887655 5899999999999954
No 13
>1lpb_A Colipase; hydrolase(carboxylic esterase); HET: BOG MUP; 2.46A {Sus scrofa} SCOP: g.3.10.1 g.3.10.1 PDB: 1eth_B* 1lpa_A* 1n8s_C 1pcn_A 1pco_A
Probab=29.43 E-value=20 Score=25.86 Aligned_cols=14 Identities=36% Similarity=1.122 Sum_probs=11.5
Q ss_pred CCcccccCCccCCCC
Q psy13494 41 DGSINWNCPCLGGMA 55 (143)
Q Consensus 41 ~GeINwdCPCLggMa 55 (143)
-| ++|.|||+.||.
T Consensus 55 ~G-~y~~CPC~~GLt 68 (95)
T 1lpb_A 55 YG-VYYKCPCERGLT 68 (95)
T ss_dssp SS-EESSCCBCTTEE
T ss_pred CC-ceEeCCCCCCCe
Confidence 35 899999999964
No 14
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=23.20 E-value=19 Score=26.69 Aligned_cols=22 Identities=41% Similarity=1.084 Sum_probs=13.5
Q ss_pred ccCCccCCCCCCCcHHHHhhhhccccccCC
Q psy13494 46 WNCPCLGGMATGPCGVQFREAFSCFHYSTD 75 (143)
Q Consensus 46 wdCPCLggMa~GPCG~eFkeAFSCF~~S~~ 75 (143)
|.|||+- | ..+.+=.|.+|=+.
T Consensus 72 iiCPC~~-~-------re~G~ChC~Lfvt~ 93 (117)
T 1dj7_A 72 WNCPCVP-M-------RERKECHCMLFLTP 93 (117)
T ss_dssp TBSSCHH-H-------HHHCCCTTSSSBCT
T ss_pred eecCCcC-h-------hhcCceeEeeeecc
Confidence 9999996 2 24444556666443
No 15
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=20.01 E-value=45 Score=24.64 Aligned_cols=21 Identities=19% Similarity=0.594 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhChhhhCCC
Q psy13494 83 FEAFKTMQDCMAQYPTLYKQN 103 (143)
Q Consensus 83 ~e~F~amq~Cm~~~Pd~y~~~ 103 (143)
..-+..+++|.+.||+.|=.-
T Consensus 67 ~~Vl~Ele~C~k~~p~~yVRl 87 (118)
T 3zxw_B 67 QDVLNEVQQCRSEYPNCFIRV 87 (118)
T ss_dssp HHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEE
Confidence 456788999999999998543
Done!