Query psy13494
Match_columns 143
No_of_seqs 102 out of 174
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 20:48:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13494.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13494hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1co4a_ g.47.1.1 (A:) Zinc dom 32.3 4.2 0.0003 24.2 -0.1 17 44-60 7-24 (42)
2 d1svdm1 d.73.1.1 (M:3-110) Rib 21.5 18 0.0013 24.6 1.6 20 83-102 68-87 (108)
3 d1rbli_ d.73.1.1 (I:) Ribulose 20.9 20 0.0014 24.4 1.7 21 82-102 67-87 (109)
4 d1ppjh_ f.28.1.1 (H:) Non-heme 20.2 30 0.0022 21.5 2.4 17 79-95 39-55 (66)
5 d2pu9a1 g.36.1.1 (A:8-115) Fer 19.9 12 0.00084 25.9 0.2 6 46-51 65-70 (108)
6 d1bxni_ d.73.1.1 (I:) Ribulose 15.9 27 0.002 24.4 1.5 23 81-103 60-82 (129)
7 d1bwvs_ d.73.1.1 (S:) Ribulose 14.6 33 0.0024 24.3 1.7 21 82-102 61-81 (138)
8 d2hf5a1 a.39.1.5 (A:81-113) Tr 14.4 22 0.0016 19.4 0.4 12 61-72 3-14 (33)
9 d1u97a_ a.17.1.2 (A:) Cytochro 14.1 37 0.0027 21.7 1.6 36 59-96 26-61 (69)
10 d1wdds_ d.73.1.1 (S:) Ribulose 14.0 36 0.0026 23.6 1.7 20 83-102 80-99 (122)
No 1
>d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic}
Probab=32.32 E-value=4.2 Score=24.25 Aligned_cols=17 Identities=18% Similarity=0.845 Sum_probs=14.3
Q ss_pred ccccC-CccCCCCCCCcH
Q psy13494 44 INWNC-PCLGGMATGPCG 60 (143)
Q Consensus 44 INwdC-PCLggMa~GPCG 60 (143)
.+|.| +|+.|-.++.|-
T Consensus 7 ~KyAC~~CIRGHRsS~C~ 24 (42)
T d1co4a_ 7 VKYACDSCIKSHKAAQCE 24 (42)
T ss_dssp EEEEETTTTTTSGGGGCC
T ss_pred eeEeHhhhhCcccccccc
Confidence 48999 999999887664
No 2
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=21.52 E-value=18 Score=24.59 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhChhhhCC
Q psy13494 83 FEAFKTMQDCMAQYPTLYKQ 102 (143)
Q Consensus 83 ~e~F~amq~Cm~~~Pd~y~~ 102 (143)
..-+..++.|.+.||+.|=.
T Consensus 68 ~~Vl~Ele~c~~~~p~~YVR 87 (108)
T d1svdm1 68 DNVLAEIEACRSAYPTHQVK 87 (108)
T ss_dssp HHHHHHHHHHHHHSTTSEEE
T ss_pred HHHHHHHHHHHHHCCCCEEE
Confidence 56788999999999998853
No 3
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=20.93 E-value=20 Score=24.43 Aligned_cols=21 Identities=14% Similarity=0.458 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHhChhhhCC
Q psy13494 82 CFEAFKTMQDCMAQYPTLYKQ 102 (143)
Q Consensus 82 C~e~F~amq~Cm~~~Pd~y~~ 102 (143)
=..-+..++.|.+.||+.|=.
T Consensus 67 ~~~Vl~ele~c~~~~p~~YVR 87 (109)
T d1rbli_ 67 PQQVLDEVRECRSEYGDCYIR 87 (109)
T ss_dssp HHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHHHHHhCCcCEEE
Confidence 345678899999999998853
No 4
>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.19 E-value=30 Score=21.48 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=14.2
Q ss_pred cCchHHHHHHHHHHHHh
Q psy13494 79 GVNCFEAFKTMQDCMAQ 95 (143)
Q Consensus 79 g~dC~e~F~amq~Cm~~ 95 (143)
..+|.++|-.|+.|.-.
T Consensus 39 ~E~C~eE~fd~~hc~D~ 55 (66)
T d1ppjh_ 39 EEDCTEELLDFLHARDH 55 (66)
T ss_dssp SCCSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 35999999999998753
No 5
>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]}
Probab=19.93 E-value=12 Score=25.86 Aligned_cols=6 Identities=83% Similarity=2.793 Sum_probs=5.6
Q ss_pred ccCCcc
Q psy13494 46 WNCPCL 51 (143)
Q Consensus 46 wdCPCL 51 (143)
|.|||+
T Consensus 65 ~iCPC~ 70 (108)
T d2pu9a1 65 WNCPCV 70 (108)
T ss_dssp TBSSCH
T ss_pred eecCCc
Confidence 999997
No 6
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=15.87 E-value=27 Score=24.36 Aligned_cols=23 Identities=9% Similarity=0.284 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHHhChhhhCCC
Q psy13494 81 NCFEAFKTMQDCMAQYPTLYKQN 103 (143)
Q Consensus 81 dC~e~F~amq~Cm~~~Pd~y~~~ 103 (143)
|=..-+..++.|.+.||+.|=.-
T Consensus 60 d~~~Vl~ele~c~~e~p~~YVRl 82 (129)
T d1bxni_ 60 DAAGILMEINNARNTFPNHYIRV 82 (129)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CHHHHHHHHHHHHHHCCcCEEEE
Confidence 34567889999999999998543
No 7
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=14.63 E-value=33 Score=24.26 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHhChhhhCC
Q psy13494 82 CFEAFKTMQDCMAQYPTLYKQ 102 (143)
Q Consensus 82 C~e~F~amq~Cm~~~Pd~y~~ 102 (143)
=..-+..+.+|.+.||+.|=.
T Consensus 61 ~~~Vl~Ele~C~k~~p~~YVR 81 (138)
T d1bwvs_ 61 PAAVLFEINACRKARSNFYIK 81 (138)
T ss_dssp HHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHHHHHHCCcceEE
Confidence 345678899999999999843
No 8
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=14.38 E-value=22 Score=19.41 Aligned_cols=12 Identities=42% Similarity=0.656 Sum_probs=9.6
Q ss_pred HHHhhhhccccc
Q psy13494 61 VQFREAFSCFHY 72 (143)
Q Consensus 61 ~eFkeAFSCF~~ 72 (143)
+++|+||.-|=.
T Consensus 3 eel~eAF~~FDk 14 (33)
T d2hf5a1 3 EEIREAFRVFDK 14 (33)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHhCC
Confidence 579999998853
No 9
>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.07 E-value=37 Score=21.70 Aligned_cols=36 Identities=22% Similarity=0.591 Sum_probs=26.4
Q ss_pred cHHHHhhhhccccccCCCCCcCchHHHHHHHHHHHHhC
Q psy13494 59 CGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQY 96 (143)
Q Consensus 59 CG~eFkeAFSCF~~S~~e~Kg~dC~e~F~amq~Cm~~~ 96 (143)
|-++=+.==-|++.+.++ ...|.+...+...||+.|
T Consensus 26 CpetK~aRDeCil~~ge~--~~~C~~lIeahk~CMr~~ 61 (69)
T d1u97a_ 26 CKPEKEERDTCILFNGQD--SEKCKEFIEKYKECMKGY 61 (69)
T ss_dssp CHHHHHHHHHHHHHTCTT--STTSHHHHHHHHHHHHHH
T ss_pred CchhhhHhhHHHHhcCCc--HHHHHHHHHHHHHHHHHc
Confidence 555555445788877654 246999999999999964
No 10
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=14.00 E-value=36 Score=23.56 Aligned_cols=20 Identities=15% Similarity=0.492 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhChhhhCC
Q psy13494 83 FEAFKTMQDCMAQYPTLYKQ 102 (143)
Q Consensus 83 ~e~F~amq~Cm~~~Pd~y~~ 102 (143)
..=+..+++|.+.||+.|=.
T Consensus 80 ~~Vl~Ele~C~k~~p~~YVR 99 (122)
T d1wdds_ 80 TQVLKELEEAKKAYPDAFVR 99 (122)
T ss_dssp HHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHHHHHCCCceEE
Confidence 45678899999999998854
Done!