RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13494
         (143 letters)



>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 117

 Score = 28.0 bits (62), Expect = 0.19
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 91  DCMAQYPTLYKQNDDDDEDLDDVKD-ESIRKEAQEKADRIIEQADSGSSHTNKK 143
            CM +     +      EDL +++  E +    +E+  + I    S ++ T KK
Sbjct: 54  KCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKK 107


>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain
           {Escherichia coli [TaxId: 562]}
          Length = 61

 Score = 26.9 bits (60), Expect = 0.21
 Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 108 EDLDDVKDE--SIRKEAQEKADRIIEQA 133
           + L   K E   I ++A ++  +I+++A
Sbjct: 2   DQLKKAKAEAQVIIEQANKRRSQILDEA 29



 Score = 26.1 bits (58), Expect = 0.53
 Identities = 5/18 (27%), Positives = 12/18 (66%)

Query: 116 ESIRKEAQEKADRIIEQA 133
           +  + EA+++  +I+ QA
Sbjct: 27  DEAKAEAEQERTKIVAQA 44


>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase
          {Yeast (Candida tropicalis) [TaxId: 5482]}
          Length = 175

 Score = 27.4 bits (59), Expect = 0.49
 Identities = 6/72 (8%), Positives = 17/72 (23%), Gaps = 2/72 (2%)

Query: 26 VELPPPEPQPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEA 85
           E+      P  ++     +   P       G    +     +    +T+          
Sbjct: 24 FEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPA--KTTGFGTTEPAAPCGNEGL 81

Query: 86 FKTMQDCMAQYP 97
          F+ ++       
Sbjct: 82 FEVIKVGSNVSS 93


>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase
          {Escherichia coli [TaxId: 562]}
          Length = 147

 Score = 26.9 bits (58), Expect = 0.74
 Identities = 8/72 (11%), Positives = 17/72 (23%)

Query: 26 VELPPPEPQPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEA 85
          VE  P +P    I  +            + +G        +      +    K  +  + 
Sbjct: 18 VEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKH 77

Query: 86 FKTMQDCMAQYP 97
           K     +    
Sbjct: 78 IKAGDRVVYAQS 89


>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl
           transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
           {Thermus thermophilus [TaxId: 274]}
          Length = 268

 Score = 26.5 bits (57), Expect = 1.3
 Identities = 18/131 (13%), Positives = 34/131 (25%), Gaps = 2/131 (1%)

Query: 1   MSTCQREGKDFIIFATKEDHAIPSSVELPPPEPQPGLILPDGSINWNCPCLGGMATGPCG 60
                RE    ++ A +E   +   +    PE + G I             G +      
Sbjct: 114 DDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYA 173

Query: 61  VQFREAFSCFHYSTDE--PKGVNCFEAFKTMQDCMAQYPTLYKQNDDDDEDLDDVKDESI 118
                    + ++            E F+       +           +E    +   SI
Sbjct: 174 EALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISI 233

Query: 119 RKEAQEKADRI 129
                EKA+R+
Sbjct: 234 DYGVMEKAERV 244


>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 209

 Score = 25.3 bits (55), Expect = 2.5
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 83  FEAFKTMQDCMAQYPTLYKQNDD----DDEDLDDVKDESIRKEAQEKADRIIEQADSG 136
            E    M++ M     L +  D      +E L ++      K A + AD ++  A  G
Sbjct: 142 MEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADEVLINAVKG 199


>d1f06a2 d.81.1.3 (A:119-268) Diaminopimelic acid dehydrogenase
           (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 150

 Score = 24.0 bits (52), Expect = 7.5
 Identities = 7/53 (13%), Positives = 12/53 (22%), Gaps = 6/53 (11%)

Query: 84  EAFKTMQDCMAQYPTLYKQNDDDDEDLDDVKDES-----IRKEAQEKADRIIE 131
              +TM D    Y        D+     +          I        +  +E
Sbjct: 93  NDIRTMPDYFVGYEVEVNFI-DEATFDSEHTGMPHGGHVITTGDTGGFNHTVE 144


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 561,926
Number of extensions: 25944
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 11
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.6 bits)