BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13496
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZKL|A Chain A, Multiple Determinants For Inhibitor Selectivity Of Cyclic
Nucleotide Phosphodiesterases
Length = 353
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 131/178 (73%), Gaps = 1/178 (0%)
Query: 29 NTSVLENHHWRSAVGCLLESNVAEQLG-SIRPELEQQISSLILATDITRQQEFLTRFKAY 87
NTSVLENHHWRSAVG L ES + L R ++E QI +LILATDI+RQ E+L+ F+++
Sbjct: 148 NTSVLENHHWRSAVGLLRESGLFSHLPLESRQQMETQIGALILATDISRQNEYLSLFRSH 207
Query: 88 LDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQLNL 147
LD G L L RH +LQ+ALKCADI NPCR W++SK+WS+KV EEFF QGD E++ +L
Sbjct: 208 LDRGDLCLEDTRHRHLVLQMALKCADICNPCRTWELSKQWSEKVTEEFFHQGDIEKKYHL 267
Query: 148 PVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEGF 205
V+ LCDRH+ SI IQ GF ++V PLF EW RF +T+LS +M+GH+ N+A W+G
Sbjct: 268 GVSPLCDRHTESIANIQIGFMTYLVEPLFTEWARFSNTRLSQTMLGHVGLNKASWKGL 325
>pdb|3G3N|A Chain A, Pde7a Catalytic Domain In Complex With 3-(2,6-
Difluorophenyl)-2-(Methylthio)quinazolin-4(3h)-One
Length = 318
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 131/178 (73%), Gaps = 1/178 (0%)
Query: 29 NTSVLENHHWRSAVGCLLESNVAEQLG-SIRPELEQQISSLILATDITRQQEFLTRFKAY 87
NTSVLENHHWRSAVG L ES + L R ++E QI +LILATDI+RQ E+L+ F+++
Sbjct: 139 NTSVLENHHWRSAVGLLRESGLFSHLPLESRQQMETQIGALILATDISRQNEYLSLFRSH 198
Query: 88 LDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQLNL 147
LD G L L RH +LQ+ALKCADI NPCR W++SK+WS+KV EEFF QGD E++ +L
Sbjct: 199 LDRGDLCLEDTRHRHLVLQMALKCADICNPCRTWELSKQWSEKVTEEFFHQGDIEKKYHL 258
Query: 148 PVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEGF 205
V+ LCDRH+ SI IQ GF ++V PLF EW RF +T+LS +M+GH+ N+A W+G
Sbjct: 259 GVSPLCDRHTESIANIQIGFMTYLVEPLFTEWARFSNTRLSQTMLGHVGLNKASWKGL 316
>pdb|3IAD|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
Length = 377
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 107/200 (53%), Gaps = 10/200 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGSI-RPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 149 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 208
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 209 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 268
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQ 199
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W + + ++ L N+
Sbjct: 269 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPD-AQDILDTLEDNR 327
Query: 200 AKWEGFFKFVVSPLFEEWHR 219
++ +P +E +R
Sbjct: 328 EWYQSTIPQAPAPPLDEQNR 347
>pdb|3G4G|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
Length = 421
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGSI-RPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 227 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 286
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 287 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 346
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 347 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 386
>pdb|1TB7|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Amp
pdb|1TB7|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Amp
pdb|1TBB|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Rolipram
pdb|1TBB|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Rolipram
Length = 332
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGSI-RPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 144 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 203
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 204 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 263
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 264 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 303
>pdb|1XOM|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Cilomilast
pdb|1XOM|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Cilomilast
pdb|1XON|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Piclamilast
pdb|1XON|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Piclamilast
pdb|1XOQ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Roflumilast
pdb|1XOQ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Roflumilast
pdb|1XOR|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Zardaverine
pdb|1XOR|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Zardaverine
pdb|1Y2B|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl
Ester
pdb|1Y2B|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl
Ester
pdb|1Y2C|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1-Phenyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2C|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1-Phenyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2D|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Methoxy-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2D|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Methoxy-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2E|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Amino-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid
Ethyl Ester
pdb|1Y2E|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Amino-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid
Ethyl Ester
pdb|1Y2K|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2K|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|3IAK|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d (Pde4d)
With Papaverine.
pdb|3K4S|A Chain A, The Structure Of The Catalytic Domain Of Human Pde4d With
4- (3-Butoxy-4-Methoxyphenyl)methyl-2-Imidazolidone
Length = 349
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGSI-RPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 161 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 220
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 221 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 280
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 281 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 320
>pdb|1ZKN|A Chain A, Structure Of Pde4d2-Ibmx
pdb|1ZKN|B Chain B, Structure Of Pde4d2-Ibmx
pdb|1ZKN|C Chain C, Structure Of Pde4d2-Ibmx
pdb|1ZKN|D Chain D, Structure Of Pde4d2-Ibmx
Length = 334
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGSI-RPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 147 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 206
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 207 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 266
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 267 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 306
>pdb|2QYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv
pdb|2QYN|B Chain B, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv
Length = 328
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGSI-RPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 140 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 199
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 200 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 259
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 260 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 299
>pdb|2PW3|A Chain A, Structure Of The Pde4d-Camp Complex
pdb|2PW3|B Chain B, Structure Of The Pde4d-Camp Complex
Length = 327
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGSI-RPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 140 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 199
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 200 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 259
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 260 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 299
>pdb|2FM0|A Chain A, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|B Chain B, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|C Chain C, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|D Chain D, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM5|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|B Chain B, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|C Chain C, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|D Chain D, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|3SL3|A Chain A, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|B Chain B, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|C Chain C, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|D Chain D, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL4|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL6|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL8|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
Length = 361
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGSI-RPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 147 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 206
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 207 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 266
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 267 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 306
>pdb|3G4I|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4K|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4L|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G58|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
Length = 381
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGSI-RPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 149 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 208
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 209 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 268
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 269 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 308
>pdb|3SL5|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
Length = 359
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGSI-RPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 147 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 206
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 207 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 266
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 267 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 306
>pdb|1Q9M|A Chain A, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|B Chain B, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|C Chain C, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|D Chain D, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1OYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|B Chain B, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|C Chain C, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|D Chain D, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1PTW|A Chain A, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|B Chain B, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|C Chain C, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|D Chain D, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|3V9B|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
Length = 360
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGSI-RPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 147 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 206
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 207 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 266
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 267 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 306
>pdb|1MKD|A Chain A, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|B Chain B, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|C Chain C, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|D Chain D, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|E Chain E, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|F Chain F, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|G Chain G, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|H Chain H, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|I Chain I, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|J Chain J, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|K Chain K, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|L Chain L, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
Length = 328
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGSI-RPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 140 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 199
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFF QG
Sbjct: 200 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFPQG 259
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 260 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 299
>pdb|3I8V|A Chain A, Crystal Structure Of Human Pde4a With
4-(3-butoxy-4-methoxyphenyl) Methyl-2-imidazolidone
pdb|3I8V|B Chain B, Crystal Structure Of Human Pde4a With
4-(3-butoxy-4-methoxyphenyl) Methyl-2-imidazolidone
Length = 354
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGS-IRPELEQQISSLILATDITRQQEFLTRFK 85
+ SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 169 DESVLENHHLAVGFKLLQEDNCDIFQNLSKRQRQSLRKMVIDMVLATDMSKHMTLLADLK 228
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +L+ + CAD+SNP +P ++ ++W+ ++ EFF+QG
Sbjct: 229 TMVETKKVTSSGVLLLDNYSDRIQVLRNMVHCADLSNPTKPLELYRQWTDRIMAEFFQQG 288
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 289 DRERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 328
>pdb|3TVX|A Chain A, The Structure Of Pde4a With Pentoxifylline At 2.84a
Resolution
pdb|3TVX|B Chain B, The Structure Of Pde4a With Pentoxifylline At 2.84a
Resolution
Length = 338
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGS-IRPELEQQISSLILATDITRQQEFLTRFK 85
+ SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 153 DESVLENHHLAVGFKLLQEDNCDIFQNLSKRQRQSLRKMVIDMVLATDMSKHMTLLADLK 212
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +L+ + CAD+SNP +P ++ ++W+ ++ EFF+QG
Sbjct: 213 TMVETKKVTSSGVLLLDNYSDRIQVLRNMVHCADLSNPTKPLELYRQWTDRIMAEFFQQG 272
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 273 DRERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 312
>pdb|2QYK|A Chain A, Crystal Structure Of Pde4a10 In Complex With Inhibitor Npv
pdb|2QYK|B Chain B, Crystal Structure Of Pde4a10 In Complex With Inhibitor Npv
Length = 335
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 9/160 (5%)
Query: 29 NTSVLENHHWRSAVGCLLESN--VAEQLGS-IRPELEQQISSLILATDITRQQEFLTRFK 85
+ SVLENHH L E N + + L R L + + ++LATD+++ L K
Sbjct: 150 DESVLENHHLAVGFKLLQEDNCDIFQNLSKRQRQSLRKMVIDMVLATDMSKHMTLLADLK 209
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +L+ + CAD+SNP +P ++ ++W+ ++ EFF+QG
Sbjct: 210 TMVETKKVTSSGVLLLDNYSDRIQVLRNMVHCADLSNPTKPLELYRQWTDRIMAEFFQQG 269
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 270 DRERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 309
>pdb|3D3P|A Chain A, Crystal Structure Of Pde4b Catalytic Domain In Complex
With A Pyrazolopyridine Inhibitor
pdb|3FRG|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A Quinoline Inhibitor
pdb|3GWT|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A Quinoline Inhibitor
pdb|3O56|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A 5- Heterocycle Pyrazolopyridine Inhibitor
pdb|3O57|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A 5- Heterocycle Pyrazolopyridine Inhibitor
Length = 353
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 108/200 (54%), Gaps = 14/200 (7%)
Query: 31 SVLENHHWRSAVGC-LLESNVAEQLGSI----RPELEQQISSLILATDITRQQEFLTRFK 85
SVLENHH AVG LL+ + ++ R L + + ++LATD+++ L K
Sbjct: 151 SVLENHHL--AVGFKLLQEEHCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLK 208
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EEFF+QG
Sbjct: 209 TMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFQQG 268
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQ 199
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W + + ++ L N+
Sbjct: 269 DKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPD-AQDILDTLEDNR 327
Query: 200 AKWEGFFKFVVSPLFEEWHR 219
++ +P +E +R
Sbjct: 328 NWYQAMIPQAPAPPLDEQNR 347
>pdb|1XLX|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Cilomilast
pdb|1XLX|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Cilomilast
pdb|1XOT|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Vardenafil
pdb|1XOT|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Vardenafil
pdb|1Y2H|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 1-(2-
Chloro-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2H|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 1-(2-
Chloro-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2J|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
Length = 398
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 20/205 (9%)
Query: 29 NTSVLENHHWRSAVG--------CLLESNVAEQLGSIRPELEQQISSLILATDITRQQEF 80
+ SVLENHH AVG C + N+ ++ R L + + ++LATD+++
Sbjct: 169 DESVLENHHL--AVGFKLLQEEHCDIFMNLTKKQ---RQTLRKMVIDMVLATDMSKHMSL 223
Query: 81 LTRFKAYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEE 134
L K ++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EE
Sbjct: 224 LADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEE 283
Query: 135 FFRQGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGH 194
FF+QGD ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W + + ++
Sbjct: 284 FFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPD-AQDILDT 342
Query: 195 LRGNQAKWEGFFKFVVSPLFEEWHR 219
L N+ ++ SP +E +R
Sbjct: 343 LEDNRNWYQSMIPQSPSPPLDEQNR 367
>pdb|3HMV|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex Tetrahydrobenzothiophene Inhibitor
pdb|3HMV|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex Tetrahydrobenzothiophene Inhibitor
Length = 378
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 20/205 (9%)
Query: 29 NTSVLENHHWRSAVG--------CLLESNVAEQLGSIRPELEQQISSLILATDITRQQEF 80
+ SVLENHH AVG C + N+ ++ R L + + ++LATD+++
Sbjct: 149 DESVLENHHL--AVGFKLLQEEHCDIFMNLTKKQ---RQTLRKMVIDMVLATDMSKHMSL 203
Query: 81 LTRFKAYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEE 134
L K ++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EE
Sbjct: 204 LADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEE 263
Query: 135 FFRQGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGH 194
FF+QGD ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W + + ++
Sbjct: 264 FFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPD-AQDILDT 322
Query: 195 LRGNQAKWEGFFKFVVSPLFEEWHR 219
L N+ ++ +P +E +R
Sbjct: 323 LEDNRNWYQAMIPQAPAPPLDEQNR 347
>pdb|3KKT|A Chain A, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)-
Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp
Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of
The C-Terminal Helix Residues 502- 509.
pdb|3KKT|B Chain B, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)-
Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp
Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of
The C-Terminal Helix Residues 502- 509
Length = 398
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 20/205 (9%)
Query: 29 NTSVLENHHWRSAVG--------CLLESNVAEQLGSIRPELEQQISSLILATDITRQQEF 80
+ SVLENHH AVG C + N+ ++ R L + + ++LATD+++
Sbjct: 169 DESVLENHHL--AVGFKLLQEEHCDIFMNLTKKQ---RQTLRKMVIDMVLATDMSKHMSL 223
Query: 81 LTRFKAYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEE 134
L K ++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EE
Sbjct: 224 LADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEE 283
Query: 135 FFRQGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGH 194
FF+QGD ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W + + ++
Sbjct: 284 FFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPD-AQDILDT 342
Query: 195 LRGNQAKWEGFFKFVVSPLFEEWHR 219
L N+ ++ SP +E +R
Sbjct: 343 LEDNRNWYQSMIPQSPSPPLDEQNR 367
>pdb|1XLZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Filaminast
pdb|1XLZ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Filaminast
pdb|1XM4|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Piclamilast
pdb|1XMU|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Roflumilast
pdb|1XMY|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Rolipram
Length = 398
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 109/202 (53%), Gaps = 14/202 (6%)
Query: 29 NTSVLENHHWRSAVGC-LLESNVAEQLGSI----RPELEQQISSLILATDITRQQEFLTR 83
+ SVLENHH AVG LL+ + ++ R L + + ++LATD+++ L
Sbjct: 169 DESVLENHHL--AVGFKLLQEEHXDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLAD 226
Query: 84 FKAYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFR 137
K ++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EEFF+
Sbjct: 227 LKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFQ 286
Query: 138 QGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRG 197
QGD ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W + + ++ L
Sbjct: 287 QGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPD-AQDILDTLED 345
Query: 198 NQAKWEGFFKFVVSPLFEEWHR 219
N+ ++ SP +E +R
Sbjct: 346 NRNWYQSMIPQSPSPPLDEQNR 367
>pdb|1TB5|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Amp
pdb|1TB5|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Amp
Length = 381
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 20/205 (9%)
Query: 29 NTSVLENHHWRSAVG--------CLLESNVAEQLGSIRPELEQQISSLILATDITRQQEF 80
+ SVLENHH AVG C + N+ ++ R L + + ++LATD+++
Sbjct: 152 DESVLENHHL--AVGFKLLQEEHCDIFMNLTKKQ---RQTLRKMVIDMVLATDMSKHMSL 206
Query: 81 LTRFKAYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEE 134
L K ++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EE
Sbjct: 207 LADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEE 266
Query: 135 FFRQGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGH 194
FF+QGD ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W + + ++
Sbjct: 267 FFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPD-AQDILDT 325
Query: 195 LRGNQAKWEGFFKFVVSPLFEEWHR 219
L N+ ++ SP +E +R
Sbjct: 326 LEDNRNWYQSMIPQSPSPPLDEQNR 350
>pdb|1RO6|A Chain A, Crystal Structure Of Pde4b2b Complexed With Rolipram (r &
S)
pdb|1RO6|B Chain B, Crystal Structure Of Pde4b2b Complexed With Rolipram (r &
S)
pdb|1RO9|A Chain A, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With 8-Br-Amp
pdb|1RO9|B Chain B, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With 8-Br-Amp
pdb|1ROR|A Chain A, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With Amp
pdb|1ROR|B Chain B, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With Amp
Length = 378
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 20/205 (9%)
Query: 29 NTSVLENHHWRSAVG--------CLLESNVAEQLGSIRPELEQQISSLILATDITRQQEF 80
+ SVLENHH AVG C + N+ ++ R L + + ++LATD+++
Sbjct: 149 DESVLENHHL--AVGFKLLQEEHCDIFMNLTKKQ---RQTLRKMVIDMVLATDMSKHMSL 203
Query: 81 LTRFKAYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEE 134
L K ++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EE
Sbjct: 204 LADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEE 263
Query: 135 FFRQGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGH 194
FF+QGD ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W + + ++
Sbjct: 264 FFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPD-AQDILDT 322
Query: 195 LRGNQAKWEGFFKFVVSPLFEEWHR 219
L N+ ++ +P +E +R
Sbjct: 323 LEDNRNWYQSMIPQAPAPPLDEQNR 347
>pdb|1F0J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b
pdb|1F0J|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b2b
Length = 377
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 20/205 (9%)
Query: 29 NTSVLENHHWRSAVG--------CLLESNVAEQLGSIRPELEQQISSLILATDITRQQEF 80
+ SVLENHH AVG C + N+ ++ R L + + ++LATD+++
Sbjct: 148 DESVLENHHL--AVGFKLLQEEHCDIFMNLTKKQ---RQTLRKMVIDMVLATDMSKHMSL 202
Query: 81 LTRFKAYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEE 134
L K ++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EE
Sbjct: 203 LADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEE 262
Query: 135 FFRQGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGH 194
FF+QGD ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W + + ++
Sbjct: 263 FFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPD-AQDILDT 321
Query: 195 LRGNQAKWEGFFKFVVSPLFEEWHR 219
L N+ ++ +P +E +R
Sbjct: 322 LEDNRNWYQSMIPQAPAPPLDEQNR 346
>pdb|3G45|A Chain A, Crystal Structure Of Human Phosphodiesterase 4b With
Regulatory Domain And D155988
pdb|3G45|B Chain B, Crystal Structure Of Human Phosphodiesterase 4b With
Regulatory Domain And D155988
Length = 421
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 93/163 (57%), Gaps = 19/163 (11%)
Query: 31 SVLENHHWRSAVG--------CLLESNVAEQLGSIRPELEQQISSLILATDITRQQEFLT 82
SVLENHH AVG C + N+ ++ R L + + ++LATD+++ L
Sbjct: 229 SVLENHHL--AVGFKLLQEEHCDIFMNLTKKQ---RQTLRKMVIDMVLATDMSKHMSLLA 283
Query: 83 RFKAYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFF 136
K ++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EEFF
Sbjct: 284 DLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFF 343
Query: 137 RQGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
+QGD ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 344 QQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 386
>pdb|2QYM|A Chain A, Crystal Structure Of Unliganded Pde4c2
Length = 358
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 13/162 (8%)
Query: 29 NTSVLENHHWRSAVGC-LLESNVAEQLGSI----RPELEQQISSLILATDITRQQEFLTR 83
+ SVLENHH AVG LL++ + ++ R L + + ++LATD+++ L
Sbjct: 148 DASVLENHHL--AVGFKLLQAENCDIFQNLSAKQRLSLRRMVIDMVLATDMSKHMNLLAD 205
Query: 84 FKAYLDS------GSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFR 137
K +++ G L L DR +LQ + CAD+SNP +P + ++W+ ++ EFF+
Sbjct: 206 LKTMVETKKVTSLGVLLLDNYSDRIQVLQNLVHCADLSNPTKPLPLYRQWTDRIMAEFFQ 265
Query: 138 QGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
QGD ER+ L ++ +CD+H+ S+ K Q GF ++ PL+E W
Sbjct: 266 QGDRERESGLDISPMCDKHTASVEKSQVGFIDYIAHPLWETW 307
>pdb|3O0J|A Chain A, Pde4b In Complex With Ligand An2898
Length = 323
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 93/160 (58%), Gaps = 13/160 (8%)
Query: 31 SVLENHHWRSAVGC-LLESNVAEQLGSI----RPELEQQISSLILATDITRQQEFLTRFK 85
SVLENHH AVG LL+ + ++ R L + + ++LATD+++ L K
Sbjct: 140 SVLENHHL--AVGFKLLQEEHCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLK 197
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EEFF+QG
Sbjct: 198 TMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFQQG 257
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 258 DKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 297
>pdb|3LY2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|C Chain C, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|D Chain D, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|E Chain E, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|F Chain F, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|G Chain G, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|H Chain H, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
Length = 357
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 93/163 (57%), Gaps = 19/163 (11%)
Query: 31 SVLENHHWRSAVG--------CLLESNVAEQLGSIRPELEQQISSLILATDITRQQEFLT 82
SVLENHH AVG C + N+ ++ R L + + ++LATD+++ L
Sbjct: 171 SVLENHHL--AVGFKLLQEEHCDIFMNLTKKQ---RQTLRKMVIDMVLATDMSKHMSLLA 225
Query: 83 RFKAYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFF 136
K ++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EEFF
Sbjct: 226 DLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFF 285
Query: 137 RQGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
+QGD ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 286 QQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 328
>pdb|2QYL|A Chain A, Crystal Structure Of Pde4b2b In Complex With Inhibitor Npv
Length = 337
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 93/160 (58%), Gaps = 13/160 (8%)
Query: 31 SVLENHHWRSAVGC-LLESNVAEQLGSI----RPELEQQISSLILATDITRQQEFLTRFK 85
SVLENHH AVG LL+ + ++ R L + + ++LATD+++ L K
Sbjct: 151 SVLENHHL--AVGFKLLQEEHCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLK 208
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EEFF+QG
Sbjct: 209 TMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFQQG 268
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W
Sbjct: 269 DKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETW 308
>pdb|1XM6|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Mesopram
pdb|1XM6|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Mesopram
pdb|1XN0|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R,S)- Rolipram
pdb|1XN0|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R,S)- Rolipram
pdb|1XOS|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Sildenafil
Length = 398
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 108/202 (53%), Gaps = 14/202 (6%)
Query: 29 NTSVLENHHWRSAVGC-LLESNVAEQLGSI----RPELEQQISSLILATDITRQQEFLTR 83
+ SVLENHH AVG LL+ + ++ R L + + ++LATD+++ L
Sbjct: 169 DESVLENHHL--AVGFKLLQEEHXDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLAD 226
Query: 84 FKAYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFR 137
K ++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EEFF+
Sbjct: 227 LKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFQ 286
Query: 138 QGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRG 197
QGD ER+ + ++ + D+H+ S+ K Q GF ++V PL+E W + + ++ L
Sbjct: 287 QGDKERERGMEISPMXDKHTASVEKSQVGFIDYIVHPLWETWADLVQPD-AQDILDTLED 345
Query: 198 NQAKWEGFFKFVVSPLFEEWHR 219
N+ ++ SP +E +R
Sbjct: 346 NRNWYQSMIPQSPSPPLDEQNR 367
>pdb|1XM4|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Piclamilast
pdb|1XMU|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Roflumilast
pdb|1XMY|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Rolipram
Length = 398
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 20/205 (9%)
Query: 29 NTSVLENHHWRSAVG--------CLLESNVAEQLGSIRPELEQQISSLILATDITRQQEF 80
+ SVLENHH AVG C + N+ ++ R L + + ++LATD+++
Sbjct: 169 DESVLENHHL--AVGFKLLQEEHCDIFMNLTKKQ---RQTLRKMVIDMVLATDMSKHMSL 223
Query: 81 LTRFKAYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEE 134
L K ++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EE
Sbjct: 224 LADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEE 283
Query: 135 FFRQGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGH 194
FF+QGD ER+ + ++ + D+H+ S+ K Q GF ++V PL+E W + + ++
Sbjct: 284 FFQQGDKERERGMEISPMXDKHTASVEKSQVGFIDYIVHPLWETWADLVQPD-AQDILDT 342
Query: 195 LRGNQAKWEGFFKFVVSPLFEEWHR 219
L N+ ++ SP +E +R
Sbjct: 343 LEDNRNWYQSMIPQSPSPPLDEQNR 367
>pdb|3ECM|A Chain A, Crystal Structure Of The Unliganded Pde8a Catalytic Domain
pdb|3ECN|A Chain A, Crystal Structure Of Pde8a Catalytic Domain In Complex
With Ibmx
pdb|3ECN|B Chain B, Crystal Structure Of Pde8a Catalytic Domain In Complex
With Ibmx
Length = 338
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 25/199 (12%)
Query: 29 NTSVLENHHWRSAVGCLLESNVAEQLGSIRPE----LEQQISSLILATDITRQQEFLTRF 84
+T+VLE+HH A + ++ L Q I ++LAT++T+ E + +F
Sbjct: 140 DTAVLESHHAALAFQLTTGDDKCNIFKNMERNDYRTLRQGIIDMVLATEMTKHFEHVNKF 199
Query: 85 KAYLD--------SGSLD---------LSKAEDRHFILQIALKCADISNPCRPWDVSKKW 127
++ +G D L E+R I ++ +KCAD+SNPCRP +W
Sbjct: 200 VNSINKPLATLEENGETDKNQEVINTMLRTPENRTLIKRMLIKCADVSNPCRPLQYCIEW 259
Query: 128 SQKVCEEFFRQGDYERQLNLPVT-SLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTK 186
+ ++ EE+F Q D E+Q LPV + DR++ SIPK Q F + ++ +F+ W F+D
Sbjct: 260 AARISEEYFSQTDEEKQQGLPVVMPVFDRNTCSIPKSQISFIDYFITDMFDAWDAFVDLP 319
Query: 187 LSTSMMGHLRGNQAKWEGF 205
+M HL N W+G
Sbjct: 320 ---DLMQHLDNNFKYWKGL 335
>pdb|3N3Z|A Chain A, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
pdb|3N3Z|B Chain B, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
Length = 326
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 26 RSANTSVLENHHWRSAVGCLLESNVAEQLGSIRPE----LEQQISSLILATDITRQQEFL 81
R + S LENHH A L E +I P+ + Q + +LILATD+ R E +
Sbjct: 134 RYNDISPLENHHCAVAFQILAEPE-CNIFSNIPPDGFKQIRQGMITLILATDMARHAEIM 192
Query: 82 TRFKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
FK +++ D S E + I +KC DISN RP +V++ W + EE+F Q D
Sbjct: 193 DSFKEKMEN--FDYSNEEHMTLLKMILIKCCDISNAVRPMEVAEPWVDCLLEEYFMQSDR 250
Query: 142 ERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFE 177
E+ LPV DR + Q GF KFV+ P+FE
Sbjct: 251 EKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFE 286
>pdb|2YY2|A Chain A, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
pdb|2YY2|B Chain B, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
Length = 333
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 26 RSANTSVLENHHWRSAVGCLLESNVAEQLGSIRPE----LEQQISSLILATDITRQQEFL 81
R + S LENHH A L E +I P+ + Q + +LILATD+ R E +
Sbjct: 141 RYNDISPLENHHCAVAFQILAEPE-CNIFSNIPPDGFKQIRQGMITLILATDMARHAEIM 199
Query: 82 TRFKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
FK +++ D S E + I +KC DISN RP +V++ W + EE+F Q D
Sbjct: 200 DSFKEKMEN--FDYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDR 257
Query: 142 ERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFE 177
E+ LPV DR + Q GF KFV+ P+FE
Sbjct: 258 EKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFE 293
>pdb|3DY8|A Chain A, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DY8|B Chain B, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DYL|A Chain A, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYL|B Chain B, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYN|A Chain A, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYN|B Chain B, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYQ|A Chain A, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYQ|B Chain B, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYS|A Chain A, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3DYS|B Chain B, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3JSI|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSI|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSW|A Chain A, Human Pde9 In Complex With Selective Inhibitor
pdb|3JSW|B Chain B, Human Pde9 In Complex With Selective Inhibitor
pdb|4E90|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitors
pdb|4E90|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitors
Length = 329
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 26 RSANTSVLENHHWRSAVGCLLESNVAEQLGSIRPE----LEQQISSLILATDITRQQEFL 81
R + S LENHH A L E +I P+ + Q + +LILATD+ R E +
Sbjct: 137 RYNDISPLENHHCAVAFQILAEPE-CNIFSNIPPDGFKQIRQGMITLILATDMARHAEIM 195
Query: 82 TRFKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
FK +++ D S E + I +KC DISN RP +V++ W + EE+F Q D
Sbjct: 196 DSFKEKMEN--FDYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDR 253
Query: 142 ERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFE 177
E+ LPV DR + Q GF KFV+ P+FE
Sbjct: 254 EKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFE 289
>pdb|2HD1|A Chain A, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|2HD1|B Chain B, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|3K3E|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3E|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3H|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|3K3H|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|4GH6|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
pdb|4GH6|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
Length = 326
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 26 RSANTSVLENHHWRSAVGCLLESNVAEQLGSIRPE----LEQQISSLILATDITRQQEFL 81
R + S LENHH A L E +I P+ + Q + +LILATD+ R E +
Sbjct: 134 RYNDISPLENHHCAVAFQILAEPE-CNIFSNIPPDGFKQIRQGMITLILATDMARHAEIM 192
Query: 82 TRFKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
FK +++ D S E + I +KC DISN RP +V++ W + EE+F Q D
Sbjct: 193 DSFKEKMEN--FDYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDR 250
Query: 142 ERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFE 177
E+ LPV DR + Q GF KFV+ P+FE
Sbjct: 251 EKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFE 286
>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
Length = 533
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 26 RSANTSVLENHHWRSAVGCLLESNVAEQLGSIRPE----LEQQISSLILATDITRQQEFL 81
R + S LENHH A L E +I P+ + Q + +LILATD+ R E +
Sbjct: 314 RYNDISPLENHHCAVAFQILAEPE-CNIFSNIPPDGFKQIRQGMITLILATDMARHAEIM 372
Query: 82 TRFKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
FK +++ D S E + I +KC DISN RP +V++ W + EE+F Q D
Sbjct: 373 DSFKEKMEN--FDYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDR 430
Query: 142 ERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFE 177
E+ LPV DR + + GF KFV+ P+FE
Sbjct: 431 EKSEGLPVAPFMDRDKVTKATAEIGFIKFVLIPMFE 466
>pdb|1SO2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SOJ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|E Chain E, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|F Chain F, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|G Chain G, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|H Chain H, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|J Chain J, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|K Chain K, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|L Chain L, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|I Chain I, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
Length = 420
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 31 SVLENHHWRSAVGCLL---ESNVAEQLGSIR-PELEQQISSLILATDITRQQEFLTRFKA 86
SVLENHH SA L E N L + + ILATD+ + +FL F A
Sbjct: 195 SVLENHHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKHFDFLAEFNA 254
Query: 87 Y---LDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER 143
++S ++ S DR + Q+ +K ADI+ P + D+ KW++ + EF+ QGD E
Sbjct: 255 KANDVNSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQGDEEA 314
Query: 144 QLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPL 175
L LP++ DR S + K+Q F +V PL
Sbjct: 315 NLGLPISPFMDRSSPQLAKLQESFITHIVGPL 346
>pdb|1TAZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 1b
Length = 365
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 10/150 (6%)
Query: 31 SVLENHHWRSAVGCLLESNVAEQLGSIRPE---LEQQISSLILATDITRQ-QEFLTRFKA 86
SVLENHH S + + + + + E L + ++LATD++ Q+ T A
Sbjct: 149 SVLENHHISSVFRLMQDDEMNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMKTA 208
Query: 87 YLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQLN 146
+D KA L + L ADIS+P + W V +W++ + EEFFRQGD E +L
Sbjct: 209 LQQLERIDKPKA------LSLLLHAADISHPTKQWLVHSRWTKALMEEFFRQGDKEAELG 262
Query: 147 LPVTSLCDRHSTSIPKIQTGFFKFVVSPLF 176
LP + LCDR ST + + Q GF F+V P F
Sbjct: 263 LPFSPLCDRTSTLVAQSQIGFIDFIVEPTF 292
>pdb|2R8Q|A Chain A, Structure Of Lmjpdeb1 In Complex With Ibmx
pdb|2R8Q|B Chain B, Structure Of Lmjpdeb1 In Complex With Ibmx
Length = 359
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 27 SANTSVLENHHWRSAVGCLLE--SNVAEQL-GSIRPELEQQISSLILATDITRQQEFLTR 83
S N SVLE HH A+ L + ++V E L G + + +LATD+ + + L+R
Sbjct: 166 SGNNSVLEVHHCSLAIEILSDPAADVFEGLSGQDVAYAYRALIDCVLATDMAKHADALSR 225
Query: 84 FKAYLDSGSLDLSKAEDRH--FILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
F SG K D H +++ +K D+SN +P++ S+ W+ V EEF+RQGD
Sbjct: 226 FTELATSG---FEKDNDTHRRLVMETLIKAGDVSNVTKPFETSRMWAMAVTEEFYRQGDM 282
Query: 142 ERQLNLPVTSLCDR-HSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSM---MGHLRG 197
E++ + V + DR + + + Q GF FV F R + L M + +
Sbjct: 283 EKEKGVEVLPMFDRSKNNELARGQIGFIDFVAGKFF----RDIVGNLFHGMQWCVDTVNS 338
Query: 198 NQAKWE 203
N+AKW+
Sbjct: 339 NRAKWQ 344
>pdb|3HC8|A Chain A, Investigation Of Aminopyridiopyrazinones As Pde5
Inhibitors: Evaluation Of Modifications To The Central
Ring System.
pdb|3HDZ|A Chain A, Identification, Synthesis, And Sar Of Amino Substituted
Pyrido[3,2b]pryaziones As Potent And Selective Pde5
Inhibitors
Length = 324
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 15/184 (8%)
Query: 31 SVLENHHWRSAVGCL-------LESNVAEQLGSIRPELEQQISSLILATDITRQQEFLTR 83
SVLE+HH+ + L L E+ + ++Q I + LA I R+ EF
Sbjct: 145 SVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFEL 204
Query: 84 FKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER 143
+ +L ++ L + + D+S +PW + ++ ++ V EFF QGD ER
Sbjct: 205 IR----KNQFNLEDPHEKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRER 260
Query: 144 -QLNLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAK 201
+LN+ T L +R + IP +Q GF + L+E ++ ++ R N+ K
Sbjct: 261 KELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHV--SEDCFPLLDGCRKNRQK 318
Query: 202 WEGF 205
W+
Sbjct: 319 WQAL 322
>pdb|2CHM|A Chain A, Crystal Structure Of N2 Substituted Pyrazolo
Pyrimidinones- A Flipped Binding Mode In Pde5
pdb|3TGE|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor1
pdb|3TGG|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor2
Length = 326
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 15/186 (8%)
Query: 29 NTSVLENHHWRSAVGCL-------LESNVAEQLGSIRPELEQQISSLILATDITRQQEFL 81
+ SVLE+HH+ + L L E+ + ++Q I + LA I R+ EF
Sbjct: 145 DESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFF 204
Query: 82 TRFKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
+ +L ++ L + + D+S +PW + ++ ++ V EFF QGD
Sbjct: 205 ELIR----KNQFNLEDPHEKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDR 260
Query: 142 ER-QLNLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQ 199
ER +LN+ T L +R + IP +Q GF + L+E ++ ++ R N+
Sbjct: 261 ERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHV--SEDCFPLLDGCRKNR 318
Query: 200 AKWEGF 205
KW+
Sbjct: 319 QKWQAL 324
>pdb|1T9S|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Gmp
pdb|1T9S|B Chain B, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Gmp
pdb|1TBF|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Sildenafil
Length = 347
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 15/186 (8%)
Query: 29 NTSVLENHHWRSAVGCL-------LESNVAEQLGSIRPELEQQISSLILATDITRQQEFL 81
+ SVLE+HH+ + L L E+ + ++Q I + LA I R+ EF
Sbjct: 166 DESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFF 225
Query: 82 TRFKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
+ +L + L + + D+S +PW + ++ ++ V EFF QGD
Sbjct: 226 ELIR----KNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDR 281
Query: 142 ER-QLNLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQ 199
ER +LN+ T L +R + IP +Q GF + L+E ++ ++ R N+
Sbjct: 282 ERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHV--SEDCFPLLDGCRKNR 339
Query: 200 AKWEGF 205
KW+
Sbjct: 340 QKWQAL 345
>pdb|1XOZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Tadalafil
pdb|1XP0|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Vardenafil
Length = 364
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 15/186 (8%)
Query: 29 NTSVLENHHWRSAVGCL-------LESNVAEQLGSIRPELEQQISSLILATDITRQQEFL 81
+ SVLE+HH+ + L L E+ + ++Q I + LA I R+ EF
Sbjct: 166 DESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFF 225
Query: 82 TRFKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
+ +L + L + + D+S +PW + ++ ++ V EFF QGD
Sbjct: 226 ELIR----KNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDR 281
Query: 142 ER-QLNLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQ 199
ER +LN+ T L +R + IP +Q GF + L+E ++ ++ R N+
Sbjct: 282 ERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHV--SEDCFPLLDGCRKNR 339
Query: 200 AKWEGF 205
KW+
Sbjct: 340 QKWQAL 345
>pdb|1RKP|A Chain A, Crystal Structure Of Pde5a1-Ibmx
Length = 326
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 31 SVLENHHWRSAVGCL-------LESNVAEQLGSIRPELEQQISSLILATDITRQQEFLTR 83
S++E+HH+ + L L E+ + ++Q I + LA I R+ EF
Sbjct: 145 SIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFEL 204
Query: 84 FKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER 143
+ +L + L + + D+S +PW + ++ ++ V EFF QGD ER
Sbjct: 205 IR----KNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRLAELVATEFFDQGDRER 260
Query: 144 -QLNLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAK 201
+LN+ T L +R + IP +Q GF + L+E ++ ++ R N+ K
Sbjct: 261 KELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHV--SEDCFPLLDGCRKNRQK 318
Query: 202 WEGF 205
W+
Sbjct: 319 WQAL 322
>pdb|3B2R|A Chain A, Crystal Structure Of Pde5a1 Catalytic Domain In Complex
With Vardenafil
pdb|3B2R|B Chain B, Crystal Structure Of Pde5a1 Catalytic Domain In Complex
With Vardenafil
Length = 330
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 31 SVLENHHWRSAVGCL-------LESNVAEQLGSIRPELEQQISSLILATDITRQQEFLTR 83
S++E+HH+ + L L E+ + ++Q I + LA I R+ EF
Sbjct: 149 SIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFEL 208
Query: 84 FKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER 143
+ +L + L + + D+S +PW + ++ ++ V EFF QGD ER
Sbjct: 209 IR----KNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRER 264
Query: 144 -QLNLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAK 201
+LN+ T L +R + IP +Q GF + L+E ++ ++ R N+ K
Sbjct: 265 KELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHV--SEDCFPLLDGCRKNRQK 322
Query: 202 WEGF 205
W+
Sbjct: 323 WQAL 326
>pdb|1UDT|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Sildenafil(Viagra)
pdb|1UDU|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Tadalafil(Cialis)
pdb|1UDU|B Chain B, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Tadalafil(Cialis)
pdb|1UHO|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed
With Vardenafil(Levitra)
Length = 324
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 31 SVLENHHWRSAVGCL-------LESNVAEQLGSIRPELEQQISSLILATDITRQQEFLTR 83
S++E+HH+ + L L E+ + ++Q I + LA I R+ EF
Sbjct: 143 SIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFEL 202
Query: 84 FKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER 143
+ +L + L + + D+S +PW + ++ ++ V EFF QGD ER
Sbjct: 203 IR----KNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRER 258
Query: 144 -QLNLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAK 201
+LN+ T L +R + IP +Q GF + L+E ++ ++ R N+ K
Sbjct: 259 KELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHV--SEDCFPLLDGCRKNRQK 316
Query: 202 WEGF 205
W+
Sbjct: 317 WQAL 320
>pdb|2H40|A Chain A, Crystal Structure Of The Catalytic Domain Of Unliganded
Pde5
pdb|2H42|A Chain A, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H42|B Chain B, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H42|C Chain C, Crystal Structure Of Pde5 In Complex With Sildenafil
pdb|2H44|A Chain A, Crystal Structure Of Pde5a1 In Complex With Icarisid Ii
Length = 326
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 31 SVLENHHWRSAVGCL-------LESNVAEQLGSIRPELEQQISSLILATDITRQQEFLTR 83
S++E+HH+ + L L E+ + ++Q I + LA I R+ EF
Sbjct: 145 SIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFEL 204
Query: 84 FKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER 143
+ +L + L + + D+S +PW + ++ ++ V EFF QGD ER
Sbjct: 205 IR----KNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRER 260
Query: 144 -QLNLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAK 201
+LN+ T L +R + IP +Q GF + L+E ++ ++ R N+ K
Sbjct: 261 KELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHV--SEDCFPLLDGCRKNRQK 318
Query: 202 WEGF 205
W+
Sbjct: 319 WQAL 322
>pdb|3SHY|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SHZ|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SIE|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3SIE|B Chain B, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3TSE|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
pdb|3TSF|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In
Complex With Novel Inhibitors
Length = 347
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 31 SVLENHHWRSAVGCL-------LESNVAEQLGSIRPELEQQISSLILATDITRQQEFLTR 83
S++E+HH+ + L L E+ + ++Q I + LA I R+ EF
Sbjct: 166 SIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFEL 225
Query: 84 FKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER 143
+ +L + L + + D+S +PW + ++ ++ V EFF QGD ER
Sbjct: 226 IR----KNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRER 281
Query: 144 -QLNLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAK 201
+LN+ T L +R + IP +Q GF + L+E ++ ++ R N+ K
Sbjct: 282 KELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHV--SEDCFPLLDGCRKNRQK 339
Query: 202 WEGF 205
W+
Sbjct: 340 WQAL 343
>pdb|3ITM|A Chain A, Catalytic Domain Of Hpde2a
pdb|3ITM|B Chain B, Catalytic Domain Of Hpde2a
pdb|3ITM|C Chain C, Catalytic Domain Of Hpde2a
pdb|3ITM|D Chain D, Catalytic Domain Of Hpde2a
pdb|3ITU|A Chain A, Hpde2a Catalytic Domain Complexed With Ibmx
pdb|3ITU|B Chain B, Hpde2a Catalytic Domain Complexed With Ibmx
pdb|3ITU|C Chain C, Hpde2a Catalytic Domain Complexed With Ibmx
pdb|3ITU|D Chain D, Hpde2a Catalytic Domain Complexed With Ibmx
Length = 345
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 8/156 (5%)
Query: 27 SANTSVLENHHWRSAVGCLLE--SNVAEQLGSIRPELEQQIS---SLILATDITRQQEFL 81
S+ SV+E HH+ A+ L N+ + R + ++ + +ILATD+
Sbjct: 146 SSEGSVMERHHFAQAIAILNTHGCNIFDHFS--RKDYQRMLDLMRDIILATDLAHHLRIF 203
Query: 82 TRFKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
+ + G D + + +L + + D+S+ + W ++K ++ + +EFF QGD
Sbjct: 204 KDLQKMAEVG-YDRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQGDL 262
Query: 142 ERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFE 177
E+ + + DR IP++Q F + + P+++
Sbjct: 263 EKAMGNRPMEMMDREKAYIPELQISFMEHIAMPIYK 298
>pdb|1Z1L|A Chain A, The Crystal Structure Of The Phosphodiesterase 2a
Catalytic Domain
Length = 345
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 8/156 (5%)
Query: 27 SANTSVLENHHWRSAVGCLLE--SNVAEQLGSIRPELEQQIS---SLILATDITRQQEFL 81
S+ SV+E HH+ A+ L N+ + R + ++ + +ILATD+
Sbjct: 146 SSEGSVMERHHFAQAIAILNTHGCNIFDHFS--RKDYQRMLDLMRDIILATDLAHHLRIF 203
Query: 82 TRFKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
+ + G D + + +L + + D+S+ + W ++K ++ + +EFF QGD
Sbjct: 204 KDLQKMAEVG-YDRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQGDL 262
Query: 142 ERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFE 177
E+ + + DR IP++Q F + + P+++
Sbjct: 263 EKAMGNRPMEMMDREKAYIPELQISFMEHIAMPIYK 298
>pdb|1T9R|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a
Length = 366
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 31 SVLENHHWRSAVGCL-------LESNVAEQLGSIRPELEQQISSLILATDITRQQEFLTR 83
S++E+HH+ + L L E+ + ++Q I + LA I R+ EF
Sbjct: 170 SIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFEL 229
Query: 84 FKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER 143
+ +L + L + + D+S +PW + ++ ++ V EFF QGD ER
Sbjct: 230 IR----KNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRER 285
Query: 144 -QLNLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAK 201
+LN+ T L +R + IP +Q GF + L+E ++ ++ R N+ K
Sbjct: 286 KELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHV--SEDCFPLLDGCRKNRQK 343
Query: 202 WEGF 205
W+
Sbjct: 344 WQAL 347
>pdb|3V93|A Chain A, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|B Chain B, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|C Chain C, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|D Chain D, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|E Chain E, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|F Chain F, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|G Chain G, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V93|H Chain H, Unliganded Structure Of Tcrpdec1 Catalytic Domain
pdb|3V94|A Chain A, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|B Chain B, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|C Chain C, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|D Chain D, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|E Chain E, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|F Chain F, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|G Chain G, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
pdb|3V94|H Chain H, Tcrpdec1 Catalytic Domain In Complex With Inhibitor Wyq16
Length = 345
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 60 ELEQQISSLILATDITRQQEFLTRFKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCR 119
E + +S LI TD++ E + + A L +G D + EDR L + L ADI R
Sbjct: 199 EFKNIVSHLIGHTDMSLHSETVAKHGAKLSAGGFDCTCKEDRLEALSLLLHAADIGASSR 258
Query: 120 PWDVSKKWSQKVCEEFFRQGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEW 179
+++KW + +EF Q + ER+ LPVT + S S+ K Q F F V P F+
Sbjct: 259 GVAIARKW-LVILQEFADQAEDERRRGLPVTPGFETPS-SVEKSQIPFLDFFVIPTFDLL 316
Query: 180 HRFLDT 185
H+ +
Sbjct: 317 HQLFPS 322
>pdb|3BJC|A Chain A, Crystal Structure Of The Pde5a Catalytic Domain In Complex
With A Novel Inhibitor
Length = 878
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 31 SVLENHHWRSAVGCL-------LESNVAEQLGSIRPELEQQISSLILATDITRQQEFLTR 83
S++E+HH+ + L L E+ + ++Q I + LA I R+ EF
Sbjct: 682 SIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFEL 741
Query: 84 FKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER 143
+ +L + L + + D+S +PW + ++ ++ V EFF QGD ER
Sbjct: 742 IR----KNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRER 797
Query: 144 -QLNLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAK 201
+LN+ T L +R + IP +Q GF + L+E ++ ++ R N+ K
Sbjct: 798 KELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHV--SEDCFPLLDGCRKNRQK 855
Query: 202 WEGF 205
W+
Sbjct: 856 WQAL 859
>pdb|3JWQ|A Chain A, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|B Chain B, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|C Chain C, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWQ|D Chain D, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain
Complexed With Sildenafil
pdb|3JWR|A Chain A, Crystal Structure Of Chimeric Pde5PDE6 CATALYTIC DOMAIN
Complexed With 3-Isobutyl-1-Methylxanthine (Ibmx) And
Pde6 Gamma-Subunit Inhibitory Peptide 70-87.
pdb|3JWR|B Chain B, Crystal Structure Of Chimeric Pde5PDE6 CATALYTIC DOMAIN
Complexed With 3-Isobutyl-1-Methylxanthine (Ibmx) And
Pde6 Gamma-Subunit Inhibitory Peptide 70-87
Length = 330
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 15/184 (8%)
Query: 31 SVLENHHWRSAVGCL-------LESNVAEQLGSIRPELEQQISSLILATDITRQQEFLTR 83
S++E+HH+ + L L E+ + ++Q I + LA I R+ EF
Sbjct: 149 SIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFEL 208
Query: 84 FKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER 143
+ +L + L + + D+S +PW + ++ ++ V EF+ QGD ER
Sbjct: 209 IR----KNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFWEQGDLER 264
Query: 144 QL--NLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAK 201
+ P+ + +PK+Q GF FV + L+E ++ ++ R N+ K
Sbjct: 265 TVLQQQPIPMMDRNKRDELPKLQVGFIDFVCTQLYEALTHV--SEDCFPLLDGCRKNRQK 322
Query: 202 WEGF 205
W+
Sbjct: 323 WQAL 326
>pdb|4DDL|A Chain A, Pde10a Crystal Structure Complexed With Novel Inhibitor
pdb|4DDL|B Chain B, Pde10a Crystal Structure Complexed With Novel Inhibitor
Length = 338
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 136 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 195
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L+ R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 196 EMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 255
Query: 146 NLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N ++WE
Sbjct: 256 GIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLSQWEK 313
Query: 205 FFK 207
+
Sbjct: 314 VIR 316
>pdb|2WEY|A Chain A, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
pdb|2WEY|B Chain B, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
Length = 343
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 141 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 200
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L+ R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 201 EMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 260
Query: 146 NLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N ++WE
Sbjct: 261 GIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLSQWEK 318
Query: 205 FFK 207
+
Sbjct: 319 VIR 321
>pdb|3UI7|A Chain A, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
pdb|3UI7|B Chain B, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
Length = 333
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 150 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 209
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L+ R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 210 EMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 269
Query: 146 NLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N ++WE
Sbjct: 270 GIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLSQWEK 327
Query: 205 FFK 207
+
Sbjct: 328 VIR 330
>pdb|2Y0J|A Chain A, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation.
pdb|2Y0J|B Chain B, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation
Length = 340
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 146 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 205
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L+ R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 206 EMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 265
Query: 146 NLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N ++WE
Sbjct: 266 GIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLSQWEK 323
Query: 205 FFK 207
+
Sbjct: 324 VIR 326
>pdb|4AEL|A Chain A, Pde10a In Complex With The Inhibitor Az5
pdb|4AEL|B Chain B, Pde10a In Complex With The Inhibitor Az5
Length = 344
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 142 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 201
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L+ R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 202 EMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 261
Query: 146 NLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N ++WE
Sbjct: 262 GIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLSQWEK 319
Query: 205 FFK 207
+
Sbjct: 320 VIR 322
>pdb|4HEU|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HEU|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HF4|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
pdb|4HF4|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
Length = 318
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 136 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 195
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L+ R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 196 EMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 255
Query: 146 NLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N ++WE
Sbjct: 256 GIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLSQWEK 313
Query: 205 FFK 207
+
Sbjct: 314 VIR 316
>pdb|4DFF|A Chain A, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
pdb|4DFF|B Chain B, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
Length = 352
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 150 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 209
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L+ R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 210 EMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 269
Query: 146 NLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N ++WE
Sbjct: 270 GIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLSQWEK 327
Query: 205 FFK 207
+
Sbjct: 328 VIR 330
>pdb|2OUN|A Chain A, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUN|B Chain B, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUP|A Chain A, Crystal Structure Of Pde10a
pdb|2OUP|B Chain B, Crystal Structure Of Pde10a
pdb|2OUQ|A Chain A, Crystal Structure Of Pde10a2 In Complex With Gmp
pdb|2OUQ|B Chain B, Crystal Structure Of Pde10a2 In Complex With Gmp
Length = 331
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 142 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 201
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L+ R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 202 EMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 261
Query: 146 NLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N ++WE
Sbjct: 262 GIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLSQWEK 319
Query: 205 FFK 207
+
Sbjct: 320 VIR 322
>pdb|3SN7|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SN7|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|4FCB|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCB|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
Length = 345
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 143 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 202
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L+ R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 203 EMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 262
Query: 146 NLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N ++WE
Sbjct: 263 GIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLSQWEK 320
Query: 205 FFK 207
+
Sbjct: 321 VIR 323
>pdb|2OUV|A Chain A, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUV|B Chain B, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUY|A Chain A, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp.
pdb|2OUY|B Chain B, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp
Length = 331
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 142 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 201
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L+ R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 202 EMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 261
Query: 146 NLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N ++WE
Sbjct: 262 GIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLSQWEK 319
Query: 205 FFK 207
+
Sbjct: 320 VIR 322
>pdb|3UUO|A Chain A, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
pdb|3UUO|B Chain B, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
Length = 337
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 154 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 213
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L+ R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 214 EMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 273
Query: 146 NLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N ++WE
Sbjct: 274 GIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLSQWEK 331
Query: 205 FFK 207
+
Sbjct: 332 VIR 334
>pdb|3IBJ|A Chain A, X-Ray Structure Of Pde2a
pdb|3IBJ|B Chain B, X-Ray Structure Of Pde2a
Length = 691
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 8/156 (5%)
Query: 27 SANTSVLENHHWRSAVGCLLE--SNVAEQLGSIRPELEQQIS---SLILATDITRQQEFL 81
S+ SV+E HH+ A+ L N+ + R + ++ + +ILATD+
Sbjct: 507 SSEGSVMERHHFAQAIAILNTHGCNIFDHFS--RKDYQRMLDLMRDIILATDLAHHLRIF 564
Query: 82 TRFKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
+ + G D + + +L + + D+S+ + W ++K ++ + +EFF QGD
Sbjct: 565 KDLQKMAEVG-YDRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQGDL 623
Query: 142 ERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFE 177
E+ + + DR IP++Q F + + P+++
Sbjct: 624 EKAMGNRPMEMMDREKAYIPELQISFMEHIAMPIYK 659
>pdb|3HQW|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 376
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 169 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 228
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 229 EMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 288
Query: 146 NLPVTSLCDRHS-TSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N +WE
Sbjct: 289 GIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLNQWEK 346
Query: 205 FFK 207
+
Sbjct: 347 VIR 349
>pdb|3HQY|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HQZ|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HR1|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 380
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 173 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 232
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 233 EMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 292
Query: 146 NLPVTSLCDRHS-TSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N +WE
Sbjct: 293 GIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLNQWEK 350
Query: 205 FFK 207
+
Sbjct: 351 VIR 353
>pdb|2O8H|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVV|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVY|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|3QPN|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPO|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPP|A Chain A, Structure Of Pde10-Inhibitor Complex
Length = 362
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 155 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 214
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 215 EMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 274
Query: 146 NLPVTSLCDRHS-TSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N +WE
Sbjct: 275 GIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLNQWEK 332
Query: 205 FFK 207
+
Sbjct: 333 VIR 335
>pdb|3LXG|A Chain A, Crystal Structure Of Rat Phosphodiesterase 10a In Complex
Wi Web-3
Length = 308
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 125 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 184
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 185 EMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 244
Query: 146 NLPVTSLCDRHS-TSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N +WE
Sbjct: 245 GIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLNQWEK 302
Query: 205 FFK 207
+
Sbjct: 303 VIR 305
>pdb|2OUR|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUR|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUS|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUS|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUU|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
pdb|2OUU|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
Length = 331
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 6/183 (3%)
Query: 29 NTSVLENHHWRSAVGCL-LES-NVAEQLGSIRPE-LEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L LE N+ L S E + + I I+ATD+ + +
Sbjct: 142 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 201
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L+ R ++ + + + + + W V+K + + EF+ +GD ++L
Sbjct: 202 EMYQTGSLNLNNQSHRDRVIGLMMTACALCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 261
Query: 146 NLPVTSLCDRHSTS-IPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEG 204
+ + DR +P+ Q GF+ V P + + L + ++ R N ++WE
Sbjct: 262 GIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLSQWEK 319
Query: 205 FFK 207
+
Sbjct: 320 VIR 322
>pdb|2JK8|A Chain A, Type Iv Secretion System Effector Protein Bepa Complexed
With A Pyrophosphate Moiety
pdb|2JK8|B Chain B, Type Iv Secretion System Effector Protein Bepa Complexed
With A Pyrophosphate Moiety
Length = 302
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 9 KKKTIVDNTSVLENHHWRSANTSVLENHHWRSAVGCLLES---NVAEQLGSIRPE 60
K K NT ++ HH+ NT+ L+N + + LE + A+ + ++R E
Sbjct: 3 KAKAKTKNTEIISPHHYVYPNTTTLKNKYGIKNLNAFLEKCSHDTAKAMINLREE 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,400,025
Number of Sequences: 62578
Number of extensions: 273943
Number of successful extensions: 839
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 127
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)