Query psy13496
Match_columns 249
No_of_seqs 121 out of 847
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:50:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3689|consensus 100.0 1.8E-54 3.8E-59 424.6 18.2 194 14-209 478-678 (707)
2 PF00233 PDEase_I: 3'5'-cyclic 100.0 1.3E-53 2.8E-58 377.3 15.7 183 14-199 49-237 (237)
3 KOG3688|consensus 100.0 9.1E-49 2E-53 362.7 9.0 183 20-208 275-462 (554)
4 KOG1229|consensus 100.0 4.8E-40 1E-44 306.0 9.5 193 16-211 553-767 (775)
5 KOG3689|consensus 40.1 7.6 0.00016 39.9 -0.7 36 207-244 640-675 (707)
6 cd00077 HDc Metal dependent ph 26.0 3.5 7.5E-05 30.9 -4.6 36 101-136 108-145 (145)
7 PF10295 DUF2406: Uncharacteri 24.7 35 0.00075 24.8 0.8 15 106-120 37-51 (69)
8 KOG0406|consensus 23.9 71 0.0015 28.5 2.7 27 156-182 148-174 (231)
9 KOG3064|consensus 23.0 1E+02 0.0022 28.2 3.5 72 146-220 31-118 (303)
10 PF08969 USP8_dimer: USP8 dime 18.4 2.5E+02 0.0055 21.5 4.6 30 116-145 26-58 (115)
No 1
>KOG3689|consensus
Probab=100.00 E-value=1.8e-54 Score=424.61 Aligned_cols=194 Identities=30% Similarity=0.605 Sum_probs=185.0
Q ss_pred ccchhhhH---HHHHHhCCCchhhccCHHHHHHHHhcC--ChhHhhc-cccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q psy13496 14 VDNTSVLE---NHHWRSANTSVLENHHWRSAVGCLLES--NVAEQLG-SIRPELEQQISSLILATDITRQQEFLTRFKAY 87 (249)
Q Consensus 14 v~n~~~~~---~la~~Ynd~SVLEnhH~a~~~~iL~~~--~~~~~l~-~~~~~~rk~ii~~ILATDMs~Hf~~i~~~~~~ 87 (249)
|||.|++. .||.+|||.|||||||+++++.||+++ +|+.+++ .++..++++|+++|||||||+|++.++.|++.
T Consensus 478 tNN~f~iks~s~LA~lY~~~SvLE~HH~~~~~~lLqe~~~nIfsnLs~~~~~~~~~~i~~~ILATDla~h~~~~~~lk~~ 557 (707)
T KOG3689|consen 478 TNNSYLIKSNSPLAQLYNDSSVLENHHFAQAFKLLQEEGCNIFSNLSKKQYQQIRKLIIDAILATDLALHFKKRADLKEM 557 (707)
T ss_pred CCcHHHHhcCCHHHHHhCCccHHHHHHHHHHHHHHhccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999876 789999999999999999999999986 7888888 57899999999999999999999999999999
Q ss_pred hhc-CCCCCCChHHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHhhcchHHHhcCCCCCccCCCCCCCcccchhh
Q psy13496 88 LDS-GSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQLNLPVTSLCDRHSTSIPKIQTG 166 (249)
Q Consensus 88 ~~~-~~~d~~~~~~r~lll~~li~~ADISn~~rp~~v~~~Wa~~l~eEF~~QGd~Ek~lglpvsp~~dR~~~~~~k~Qig 166 (249)
++. +.+++.+.+||.++++++||||||||+||||+++++|+++|++|||.|||+|+++|++|+|||||++..+|++|+|
T Consensus 558 v~~~~~~~~~~~~hr~lvl~mmmtacDLSn~TKpwei~~qwa~~I~~EFf~QGDeek~lg~~p~pmmDR~k~~vp~~Qvg 637 (707)
T KOG3689|consen 558 VETKGVYDLENYSHRILVLAMMMTACDLSNPTKPWEIQKQWAELIAEEFFDQGDEEKELGLEPSPMMDRDKASVPKLQVG 637 (707)
T ss_pred HhccCcccccchhHHHHHHHHHHHHhhccCCcCCccHHHHHHHHHHHHHHhcchHHHHcCCCCCcccccCcccCchhhhh
Confidence 988 7899999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred hHhHhHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhhhhh
Q psy13496 167 FFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEGFFKFV 209 (249)
Q Consensus 167 Fi~~iv~Plf~~l~~~~p~~l~~~~l~~l~~N~~~W~~~~~~~ 209 (249)
||++||.|+|++|++++|+ .+++++.|+.|+.+|+++.+..
T Consensus 638 Fid~I~~Plyet~a~l~~~--~~pmld~l~~Nr~~w~~l~~~~ 678 (707)
T KOG3689|consen 638 FIDYICIPLYETWADLVPD--AQPMLDGLEDNREWWQSLIPES 678 (707)
T ss_pred HHHHHHHHHHHHHHHhccc--hhhHHHHHHHhHHHHHHhhhhh
Confidence 9999999999999999976 3789999999999999999876
No 2
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=100.00 E-value=1.3e-53 Score=377.27 Aligned_cols=183 Identities=42% Similarity=0.724 Sum_probs=165.1
Q ss_pred ccchhhhH---HHHHHhCCCchhhccCHHHHHHHHhcC--ChhHhhc-cccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q psy13496 14 VDNTSVLE---NHHWRSANTSVLENHHWRSAVGCLLES--NVAEQLG-SIRPELEQQISSLILATDITRQQEFLTRFKAY 87 (249)
Q Consensus 14 v~n~~~~~---~la~~Ynd~SVLEnhH~a~~~~iL~~~--~~~~~l~-~~~~~~rk~ii~~ILATDMs~Hf~~i~~~~~~ 87 (249)
++|.|++. ++|++|||+|||||||++.++++|+++ +++..++ ..+..+|++|+++||||||++|++++++|+..
T Consensus 49 ~~N~flv~~~~~LA~~Y~d~SvLE~~H~~~~~~lL~~~~~nil~~l~~~~~~~~r~~ii~~ILaTDm~~h~~~~~~~~~~ 128 (237)
T PF00233_consen 49 VNNAFLVKTNSPLAILYNDRSVLENHHCALAFQLLRKEECNILSNLSEDDYQEFRKLIIELILATDMSKHFELLSKLQEK 128 (237)
T ss_dssp SCHHHHHHTTSHHHHHTTTSSHHHHHHHHHHHHHHTSTTTTTTTTS-HHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHH
T ss_pred cccchhhccccchhhhcCccCCccccHHHHHHHHHHhhhhhhhcchhhhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 68888865 788999999999999999999999854 5666666 45788999999999999999999999999999
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHhhcchHHHhcCCCCCccCCCCCCCcccchhhh
Q psy13496 88 LDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQLNLPVTSLCDRHSTSIPKIQTGF 167 (249)
Q Consensus 88 ~~~~~~d~~~~~~r~lll~~li~~ADISn~~rp~~v~~~Wa~~l~eEF~~QGd~Ek~lglpvsp~~dR~~~~~~k~QigF 167 (249)
++.+.. .+.++|.++++++||||||||++|||+++.+|+.++++|||.|||+|+++|+|++|+|||++.++|++|+||
T Consensus 129 ~~~~~~--~~~~~r~~~l~~ll~~ADisn~~rp~~~~~kW~~~l~~Ef~~Qgd~E~~~gl~~s~~~dr~~~~~~~~Qi~F 206 (237)
T PF00233_consen 129 LDSGDF--LDEDDRQLLLQLLLKAADISNPARPWDVAKKWAERLMEEFFRQGDLEKELGLPVSPLMDRDKTNLAKSQIGF 206 (237)
T ss_dssp HHTTEB--TTTCHHHHHHHHHHHHHHTGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCTTGSTTTGGHHHHHHHH
T ss_pred hhhhcc--cchHHHHHHHHhcccccccccccCcHHHHHHHHHHHHHHHhhhhhHHHHcCCCcccccCccccCcccCCCch
Confidence 876532 223399999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Q psy13496 168 FKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQ 199 (249)
Q Consensus 168 i~~iv~Plf~~l~~~~p~~l~~~~l~~l~~N~ 199 (249)
|++||.|+|+++++++|+.+ ++++++|++|+
T Consensus 207 i~~iv~Plf~~l~~~~p~~~-~~~~~~l~~Nr 237 (237)
T PF00233_consen 207 IDFIVKPLFEALAKLFPEDL-QPLLDQLEENR 237 (237)
T ss_dssp HHHTHHHHHHHHHHHSTTTG-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCHHHH-HHHHHHHHcCC
Confidence 99999999999999999744 78999999997
No 3
>KOG3688|consensus
Probab=100.00 E-value=9.1e-49 Score=362.71 Aligned_cols=183 Identities=32% Similarity=0.564 Sum_probs=156.5
Q ss_pred hHHHHHHhCCCchhhccCHHHHHHHHhcC--ChhHhhc-cccHHHHHHHHHHHHhhcchhhHHHHHHHHHHhhcCCCCCC
Q psy13496 20 LENHHWRSANTSVLENHHWRSAVGCLLES--NVAEQLG-SIRPELEQQISSLILATDITRQQEFLTRFKAYLDSGSLDLS 96 (249)
Q Consensus 20 ~~~la~~Ynd~SVLEnhH~a~~~~iL~~~--~~~~~l~-~~~~~~rk~ii~~ILATDMs~Hf~~i~~~~~~~~~~~~d~~ 96 (249)
.+.-|++|||+|||||||++.+|++|++. |++.+|. +.+.++|-++|++||||||+.||+.++.+++.++..+
T Consensus 275 ~s~~AiLYNDRSVLENHH~sas~rLl~edE~nil~nLs~de~relR~LViEmVLaTDms~HFqqiktmk~~L~~~e---- 350 (554)
T KOG3688|consen 275 RSDKAILYNDRSVLENHHASASFRLLQEDEMNILINLSKDEWRELRNLVIEMVLATDMSQHFQQIKTMKERLQQPE---- 350 (554)
T ss_pred cCceeEEeccHHHHhhhhHHHHHHHhcchhhhHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhChh----
Confidence 34567999999999999999999999864 6777777 5688999999999999999999999999999987532
Q ss_pred ChHHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHhhcchHHHhcCCCCCccCCCCCCCcccchhhhHhHhHHHHH
Q psy13496 97 KAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLF 176 (249)
Q Consensus 97 ~~~~r~lll~~li~~ADISn~~rp~~v~~~Wa~~l~eEF~~QGd~Ek~lglpvsp~~dR~~~~~~k~QigFi~~iv~Plf 176 (249)
..||..++++++||||||+|+|||.+|.+|+++|+||||+|||.|+++|||+||+|||.++.++++|+|||++||.|+|
T Consensus 351 -~iDk~k~lsLllh~aDIshPaK~w~lH~rWT~~llEEFfrQGD~EaelGLPfSPlcDR~st~VAqsQigFIdfIVePt~ 429 (554)
T KOG3688|consen 351 -GIDKLKALSLLLHAADISHPAKPWGLHHRWTMALLEEFFRQGDKEAELGLPFSPLCDRKSTMVAQSQIGFIDFIVEPTF 429 (554)
T ss_pred -hhhhHHHHHHHHHHhccCCCcccccHHHHHHHHHHHHHHHccchHhhcCCCCCcccCCcchhhhhhhccceeeeecchH
Confidence 2789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcchhhhHHHH--HHHHHHHHHHHhhhhh
Q psy13496 177 EEWHRFLDTKLSTSMM--GHLRGNQAKWEGFFKF 208 (249)
Q Consensus 177 ~~l~~~~p~~l~~~~l--~~l~~N~~~W~~~~~~ 208 (249)
.++.++.-. +..+++ ..-..|..+|......
T Consensus 430 tv~~d~~ek-~v~Pl~d~~~~~~~~~~~~~s~~~ 462 (554)
T KOG3688|consen 430 TVLTDMTEK-IVLPLIDEPSKEHNHPKWASSITL 462 (554)
T ss_pred HHHHHHHHh-hccccCCCcccccCCccccccccc
Confidence 999876321 111221 2234555566655543
No 4
>KOG1229|consensus
Probab=100.00 E-value=4.8e-40 Score=305.99 Aligned_cols=193 Identities=30% Similarity=0.520 Sum_probs=164.0
Q ss_pred chhhhH---HHHHHhCCCchhhccCHHHHHHHHhc----CChhHhhc-cccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q psy13496 16 NTSVLE---NHHWRSANTSVLENHHWRSAVGCLLE----SNVAEQLG-SIRPELEQQISSLILATDITRQQEFLTRFKAY 87 (249)
Q Consensus 16 n~~~~~---~la~~Ynd~SVLEnhH~a~~~~iL~~----~~~~~~l~-~~~~~~rk~ii~~ILATDMs~Hf~~i~~~~~~ 87 (249)
|.|+.. .||++|||.+||||||.|++|++-.+ +|++.++. ..+..+|..||+|+|||||++||+.+.+|...
T Consensus 553 NafLcNagqeLAiLYNDnaiLEnHH~ALAFQLTlkdn~ncNIFknidRe~f~qlR~AiidMVLATdiskHFEhl~KF~ks 632 (775)
T KOG1229|consen 553 NAFLCNAGQELAILYNDNAILENHHIALAFQLTLKDNANCNIFKNIDREEFIQLRHAIIDMVLATDISKHFEHLAKFNKS 632 (775)
T ss_pred ceeEecCCcceeEEeccchHhhhhhhhheeeeeeccCcccchhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556554 57899999999999999999997543 35666665 34667899999999999999999999999986
Q ss_pred hhcC------CCCC-------CChHHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHhhcchHHHhcCCCCC-ccC
Q psy13496 88 LDSG------SLDL-------SKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQLNLPVT-SLC 153 (249)
Q Consensus 88 ~~~~------~~d~-------~~~~~r~lll~~li~~ADISn~~rp~~v~~~Wa~~l~eEF~~QGd~Ek~lglpvs-p~~ 153 (249)
++.. .-|. .-+++..++..||+|||||+||+|||++|.+|+.||.||+|.|.|+||+.||||+ +.+
T Consensus 633 inkpmaaeiegsDcecepagknf~eNqilI~~MliKCADiaNP~R~ldLCieWAgRIsEEYFaQTdEEK~kGLPV~M~VF 712 (775)
T KOG1229|consen 633 INKPMAAEIEGSDCECEPAGKNFDENQILICDMLIKCADIANPARELDLCIEWAGRISEEYFAQTDEEKEKGLPVTMEVF 712 (775)
T ss_pred ccccccceeecccCccccccCCCCccceeHHHHHHHHhccCCccchhhHHHHHHhHHHHHHHHhhhHHHhcCCceeeeee
Confidence 5421 0111 0135678899999999999999999999999999999999999999999999998 799
Q ss_pred CCCCCCcccchhhhHhHhHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhhhhhcC
Q psy13496 154 DRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEGFFKFVVS 211 (249)
Q Consensus 154 dR~~~~~~k~QigFi~~iv~Plf~~l~~~~p~~l~~~~l~~l~~N~~~W~~~~~~~~~ 211 (249)
||+++++|++|+|||++++.-+|.++..+.. + ..++++|.+|.++|+.+....+.
T Consensus 713 DRNTCniP~sQ~~FID~F~~d~F~a~daFAh--L-~aLmdhLadNYehWKtlddlkck 767 (775)
T KOG1229|consen 713 DRNTCNIPISQCGFIDMFARDAFAAFDAFAH--L-GALMDHLADNYEHWKTLDDLKCK 767 (775)
T ss_pred cCCccCCchhhhhHHHHHHHHHHHHHHHHHh--h-HHHHHHHHHhhhhheechhhcCc
Confidence 9999999999999999999999999999863 4 46999999999999987765443
No 5
>KOG3689|consensus
Probab=40.10 E-value=7.6 Score=39.91 Aligned_cols=36 Identities=22% Similarity=0.595 Sum_probs=32.7
Q ss_pred hhhcCcchhhhHhhhccccchhhhccccccccccchhc
Q psy13496 207 KFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEGTD 244 (249)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (249)
+..+.|++++|.++. +..+.|++.++.|...|+.+.
T Consensus 640 d~I~~Plyet~a~l~--~~~~pmld~l~~Nr~~w~~l~ 675 (707)
T KOG3689|consen 640 DYICIPLYETWADLV--PDAQPMLDGLEDNREWWQSLI 675 (707)
T ss_pred HHHHHHHHHHHHHhc--cchhhHHHHHHHhHHHHHHhh
Confidence 467889999999999 889999999999999999875
No 6
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=25.95 E-value=3.5 Score=30.88 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhccCCCCCCC--hHHHHHHHHHHHHHHh
Q psy13496 101 RHFILQIALKCADISNPCRP--WDVSKKWSQKVCEEFF 136 (249)
Q Consensus 101 r~lll~~li~~ADISn~~rp--~~v~~~Wa~~l~eEF~ 136 (249)
.......+++.||.-...+. +....+|.....++||
T Consensus 108 ~~~~~~~~l~~AD~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (145)
T cd00077 108 EITLEARIVKLADRLDALRRDSREKRRRIAEEDLEELL 145 (145)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCccccCCHHHHHhhC
Confidence 34578889999998887777 7777777777777664
No 7
>PF10295 DUF2406: Uncharacterised protein (DUF2406); InterPro: IPR018809 This entry represents a family of small proteins conserved in fungi. The function is not known.
Probab=24.74 E-value=35 Score=24.78 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=11.3
Q ss_pred HHHHhhccCCCCCCC
Q psy13496 106 QIALKCADISNPCRP 120 (249)
Q Consensus 106 ~~li~~ADISn~~rp 120 (249)
+--|.-.|+|||+|+
T Consensus 37 G~~I~~PD~SNPTR~ 51 (69)
T PF10295_consen 37 GNPITDPDRSNPTRS 51 (69)
T ss_pred CCccCCCCCCCCCcc
Confidence 444568899999974
No 8
>KOG0406|consensus
Probab=23.86 E-value=71 Score=28.49 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=20.8
Q ss_pred CCCCcccchhhhHhHhHHHHHHHHHHh
Q psy13496 156 HSTSIPKIQTGFFKFVVSPLFEEWHRF 182 (249)
Q Consensus 156 ~~~~~~k~QigFi~~iv~Plf~~l~~~ 182 (249)
+.+.....|+||+|+++.|.|..+-..
T Consensus 148 ~k~~fgG~~~G~vDi~~~p~~~~~~~~ 174 (231)
T KOG0406|consen 148 GKDFFGGETIGFVDIAIGPSFERWLAV 174 (231)
T ss_pred CCCCCCCCCcCHhhhhHHhhHHHHHHH
Confidence 345566689999999999998876543
No 9
>KOG3064|consensus
Probab=23.00 E-value=1e+02 Score=28.19 Aligned_cols=72 Identities=13% Similarity=0.290 Sum_probs=46.3
Q ss_pred CCCCCccCCCCCCCcccchhhhHh----------------HhHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhhhhh
Q psy13496 146 NLPVTSLCDRHSTSIPKIQTGFFK----------------FVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEGFFKFV 209 (249)
Q Consensus 146 glpvsp~~dR~~~~~~k~QigFi~----------------~iv~Plf~~l~~~~p~~l~~~~l~~l~~N~~~W~~~~~~~ 209 (249)
-..++.+|+|.++.++.||-.=+. .+-.-||+-+.- +... ...+++|.+|+.+|-+.....
T Consensus 31 eyNvTGLCnR~SCPLANSrYATVre~~g~~yLymKt~ERaH~P~klwErikL--SkNy-ekALeQIde~Ll~Wp~~~~HK 107 (303)
T KOG3064|consen 31 EYNVTGLCNRSSCPLANSRYATVREENGVLYLYMKTIERAHMPRKLWERIKL--SKNY-EKALEQIDEQLLYWPKYVIHK 107 (303)
T ss_pred ccccceeeccccCcCccccceeEeecCCEEEEEEechhhhcCcHHHHHHHhc--chhH-HHHHHHHHHHHhcchHHHHHH
Confidence 356788999999999988865331 222335554322 2222 357899999999999988765
Q ss_pred cCcchhhhHhh
Q psy13496 210 VSPLFEEWHRF 220 (249)
Q Consensus 210 ~~~~~~~~~~~ 220 (249)
+-.-|+-+-++
T Consensus 108 cKQRltklTQy 118 (303)
T KOG3064|consen 108 CKQRLTKLTQY 118 (303)
T ss_pred HHHHHHHHHHH
Confidence 55444444444
No 10
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=18.41 E-value=2.5e+02 Score=21.55 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=22.7
Q ss_pred CCCCChHHHHHHHHHHH---HHHhhcchHHHhc
Q psy13496 116 NPCRPWDVSKKWSQKVC---EEFFRQGDYERQL 145 (249)
Q Consensus 116 n~~rp~~v~~~Wa~~l~---eEF~~QGd~Ek~l 145 (249)
++..|.....+++..++ ++++.+||.|.+.
T Consensus 26 ~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AY 58 (115)
T PF08969_consen 26 DKNIPLKRYLRSANKLLREAEEYRQEGDEEQAY 58 (115)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 67778888888888887 5577899999984
Done!