RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13496
(249 letters)
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic
phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A
{Homo sapiens} PDB: 3g3n_A*
Length = 353
Score = 225 bits (576), Expect = 4e-73
Identities = 100/176 (56%), Positives = 130/176 (73%), Gaps = 1/176 (0%)
Query: 29 NTSVLENHHWRSAVGCLLESNVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRFKAY 87
NTSVLENHHWRSAVG L ES + L R ++E QI +LILATDI+RQ E+L+ F+++
Sbjct: 148 NTSVLENHHWRSAVGLLRESGLFSHLPLESRQQMETQIGALILATDISRQNEYLSLFRSH 207
Query: 88 LDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQLNL 147
LD G L L RH +LQ+ALKCADI NPCR W++SK+WS+KV EEFF QGD E++ +L
Sbjct: 208 LDRGDLCLEDTRHRHLVLQMALKCADICNPCRTWELSKQWSEKVTEEFFHQGDIEKKYHL 267
Query: 148 PVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 203
V+ LCDRH+ SI IQ GF ++V PLF EW RF +T+LS +M+GH+ N+A W+
Sbjct: 268 GVSPLCDRHTESIANIQIGFMTYLVEPLFTEWARFSNTRLSQTMLGHVGLNKASWK 323
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A*
1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A*
1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A*
3sl6_A* 3sl8_A* 1oyn_A* ...
Length = 349
Score = 210 bits (535), Expect = 6e-67
Identities = 58/184 (31%), Positives = 99/184 (53%), Gaps = 10/184 (5%)
Query: 29 NTSVLENHHWRSAVGCLL--ESNVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L ++ + L R L + + ++LATD+++ L K
Sbjct: 161 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 220
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 221 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 280
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQ 199
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W + ++ L N+
Sbjct: 281 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQD-ILDTLEDNR 339
Query: 200 AKWE 203
++
Sbjct: 340 EWYQ 343
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite,
phosphodiesterases,, hydrolase; 2.00A {Trypanosoma
cruzi} PDB: 3v94_A*
Length = 345
Score = 202 bits (515), Expect = 4e-64
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 7/178 (3%)
Query: 29 NTSVLENHHWRSAVGCLL--ESNVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRFK 85
LE H +A L E + + + E + +S LI TD++ E + +
Sbjct: 165 GKGTLEQLHTATAFELLNVTEFDFTSSMDNASFLEFKNIVSHLIGHTDMSLHSETVAKHG 224
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
A L +G D + EDR L + L ADI R +++KW + +EF Q + ER+
Sbjct: 225 AKLSAGGFDCTCKEDRLEALSLLLHAADIGASSRGVAIARKWL-VILQEFADQAEDERRR 283
Query: 146 NLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 203
LPVT + +S+ K Q F F V P F+ H+ + + +LR + +
Sbjct: 284 GLPVTPGFETP-SSVEKSQIPFLDFFVIPTFDLLHQLFPS--IEEPLHNLRKLRELYA 338
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, UCR2, alternative splicing, cytoplasm,
cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo
sapiens} PDB: 3g45_A*
Length = 421
Score = 204 bits (520), Expect = 6e-64
Identities = 58/184 (31%), Positives = 99/184 (53%), Gaps = 10/184 (5%)
Query: 29 NTSVLENHHWRSAVGCLL--ESNVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L ++ + L R L + + ++LATD+++ L K
Sbjct: 227 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 286
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 287 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 346
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQ 199
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W + ++ L N+
Sbjct: 347 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQD-ILDTLEDNR 405
Query: 200 AKWE 203
++
Sbjct: 406 EWYQ 409
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B
phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Length = 420
Score = 204 bits (519), Expect = 8e-64
Identities = 59/229 (25%), Positives = 92/229 (40%), Gaps = 19/229 (8%)
Query: 29 NTSVLENHHWRSAVGCLLESNVAEQLGSI----RPELEQQISSLILATDITRQQEFLTRF 84
+ SVLENHH SA L L + + ILATD+ + +FL F
Sbjct: 193 DRSVLENHHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKHFDFLAEF 252
Query: 85 KAYL---DSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
A +S ++ S DR + Q+ +K ADI+ P + D+ KW++ + EF+ QGD
Sbjct: 253 NAKANDVNSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQGDE 312
Query: 142 ERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAK 201
E L LP++ DR S + K+Q F +V PL + L + N +
Sbjct: 313 EANLGLPISPFMDRSSPQLAKLQESFITHIVGPLCNSYDAAGL--LPGQWLEAEEDNDTE 370
Query: 202 WEG----------FFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKW 240
+ + + R ++ +M HL N W
Sbjct: 371 SGDDEDGEELDTEDEEMENNLNPKPPRRKSRRRIFCQLMHHLTENHKIW 419
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains,
allosteric regulation hydrolase, membrane; 3.02A {Homo
sapiens}
Length = 691
Score = 209 bits (533), Expect = 1e-63
Identities = 37/180 (20%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 27 SANTSVLENHHWRSAVGCLLES--NVAEQL-GSIRPELEQQISSLILATDITRQQEFLTR 83
S+ SV+E HH+ A+ L N+ + + + +ILATD+
Sbjct: 507 SSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILATDLAHHLRIFKD 566
Query: 84 FKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER 143
+ + G D + + +L + + D+S+ + W ++K ++ + +EFF QGD E+
Sbjct: 567 LQKMAEVG-YDRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQGDLEK 625
Query: 144 QLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 203
+ + DR IP++Q F + + P+++ + + + N+ W
Sbjct: 626 AMGNRPMEMMDREKAYIPELQISFMEHIAMPIYKLLQDLFPK--AAELYERVASNREHWT 683
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE 10A, PDE10 inhibitors, allosteric enzyme,
alternative splicing; HET: PF9; 1.53A {Rattus
norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Length = 380
Score = 200 bits (511), Expect = 4e-63
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 6/179 (3%)
Query: 29 NTSVLENHHWRSAVGCLL--ESNVAEQLGS-IRPELEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L N+ L S ++ + I I+ATD+ + +
Sbjct: 173 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 232
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L R ++ + + D+ + + W V+K + + EF+ +GD ++L
Sbjct: 233 EMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 292
Query: 146 NLPVTSLCDR-HSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 203
+ + DR +P+ Q GF+ V P + + L + ++ R N +WE
Sbjct: 293 GIQPIPMMDRDKRDEVPQGQLGFYNAVAIPCYTTLTQILPP--TEPLLKACRDNLNQWE 349
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase;
1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A*
1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A*
1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A*
1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Length = 377
Score = 200 bits (511), Expect = 5e-63
Identities = 55/184 (29%), Positives = 97/184 (52%), Gaps = 10/184 (5%)
Query: 29 NTSVLENHHWRSAVGCLL--ESNVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRFK 85
+ SVLENHH L ++ L R L + + ++LATD+++ L K
Sbjct: 148 DESVLENHHLAVGFKLLQEEHCDIFMNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLK 207
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +L+ + CAD+SNP + ++ ++W+ ++ EEFF+QG
Sbjct: 208 TMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFQQG 267
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQ 199
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W + ++ L N+
Sbjct: 268 DKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPDAQD-ILDTLEDNR 326
Query: 200 AKWE 203
++
Sbjct: 327 NWYQ 330
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A
{Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A*
3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A
2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A*
2ovv_A* 2ovy_A* ...
Length = 331
Score = 199 bits (507), Expect = 5e-63
Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Query: 29 NTSVLENHHWRSAVGCLLES--NVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRFK 85
+TS +E HH+ V L N+ L S ++ + I I+ATD+ + +
Sbjct: 142 STSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLE 201
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+GSL+L+ R ++ + + + + + W V+K + + EF+ +GD ++L
Sbjct: 202 EMYQTGSLNLNNQSHRDRVIGLMMTACALCSVTKLWPVTKLTANDIYAEFWAEGDEMKKL 261
Query: 146 NLPVTSLCDR-HSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 203
+ + DR +P+ Q GF+ V P + + L + ++ R N ++WE
Sbjct: 262 GIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILP--PTEPLLKACRDNLSQWE 318
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase
1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens}
SCOP: a.211.1.2
Length = 365
Score = 197 bits (503), Expect = 5e-62
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 9/216 (4%)
Query: 29 NTSVLENHHWRSAVGCLL--ESNVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRFK 85
+ SVLENHH S + E N+ L EL + ++LATD++ + + K
Sbjct: 147 DRSVLENHHISSVFRLMQDDEMNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMK 206
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
L + D+ L + L ADIS+P + W V +W++ + EEFFRQGD E +L
Sbjct: 207 TALQQL-----ERIDKPKALSLLLHAADISHPTKQWLVHSRWTKALMEEFFRQGDKEAEL 261
Query: 146 NLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEGF 205
LP + LCDR ST + + Q GF F+V P F + + + ++ +
Sbjct: 262 GLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQP-LADEDSKSKNQPSFQ 320
Query: 206 FKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 241
++ + ++ + ++ N+ KW+
Sbjct: 321 WRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQKWK 356
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A;
phophodiestrase, enzyme mechanism, hydrolase, manganes
binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo
sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A*
3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A*
3n3z_A*
Length = 329
Score = 195 bits (497), Expect = 1e-61
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 6/178 (3%)
Query: 29 NTSVLENHHWRSAVGCLL--ESNVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRFK 85
+ S LENHH A L E N+ + ++ Q + +LILATD+ R E + FK
Sbjct: 140 DISPLENHHCAVAFQILAEPECNIFSNIPPDGFKQIRQGMITLILATDMARHAEIMDSFK 199
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+++ D S E + I +KC DISN RP +V++ W + EE+F Q D E+
Sbjct: 200 EKMENF--DYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKSE 257
Query: 146 NLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 203
LPV DR + Q GF KFV+ P+FE + + M+ L ++ ++E
Sbjct: 258 GLPVAPFMDRDKVTKATAQIGFIKFVLIPMFETVTKLFP-MVEEIMLQPLWESRDRYE 314
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding,
all-alpha-helical, alternative splicing, hydrolase,
membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens}
PDB: 3itm_A* 1z1l_A
Length = 345
Score = 194 bits (494), Expect = 8e-61
Identities = 36/177 (20%), Positives = 75/177 (42%), Gaps = 6/177 (3%)
Query: 30 TSVLENHHWRSAVGCLLES--NVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRFKA 86
SV+E HH+ A+ L N+ + + + +ILATD+ +
Sbjct: 149 GSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILATDLAHHLRIFKDLQK 208
Query: 87 YLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQLN 146
+ G D + + +L + + D+S+ + W ++K ++ + +EFF QGD E+ +
Sbjct: 209 MAEVG-YDRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQGDLEKAMG 267
Query: 147 LPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 203
+ DR IP++Q F + + P+++ + + + N+ W
Sbjct: 268 NRPMEMMDREKAYIPELQISFMEHIAMPIYKLLQDLFPK--AAELYERVASNREHWT 322
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase;
HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB:
1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A*
3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A*
2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Length = 347
Score = 192 bits (489), Expect = 4e-60
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 7/180 (3%)
Query: 29 NTSVLENHHWRSAVGCLL--ESNVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRFK 85
+ SVLE+HH+ + L + + L + I ILATD+ + F
Sbjct: 166 DESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFF 225
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER-Q 144
+ +L + L + + D+S +PW + ++ ++ V EFF QGD ER +
Sbjct: 226 ELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRERKE 285
Query: 145 LNLPVTSLCDR-HSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 203
LN+ T L +R IP +Q GF + L+E + ++ R N+ KW+
Sbjct: 286 LNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSED--CFPLLDGCRKNRQKWQ 343
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic
phosphodiesterase 8A...; phosphodiesterase 8A PDE8A
inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A*
Length = 338
Score = 191 bits (487), Expect = 7e-60
Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 25/197 (12%)
Query: 29 NTSVLENHHWRSAVGCLL---ESNVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRF 84
+T+VLE+HH A + N+ + + + L Q I ++LAT++T+ E + +F
Sbjct: 140 DTAVLESHHAALAFQLTTGDDKCNIFKNMERNDYRTLRQGIIDMVLATEMTKHFEHVNKF 199
Query: 85 KAYLDS-----------------GSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKW 127
++ + L E+R I ++ +KCAD+SNPCRP +W
Sbjct: 200 VNSINKPLATLEENGETDKNQEVINTMLRTPENRTLIKRMLIKCADVSNPCRPLQYCIEW 259
Query: 128 SQKVCEEFFRQGDYERQLNLPVTS-LCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTK 186
+ ++ EE+F Q D E+Q LPV + DR++ SIPK Q F + ++ +F+ W F+D
Sbjct: 260 AARISEEYFSQTDEEKQQGLPVVMPVFDRNTCSIPKSQISFIDYFITDMFDAWDAFVDLP 319
Query: 187 LSTSMMGHLRGNQAKWE 203
+M HL N W+
Sbjct: 320 ---DLMQHLDNNFKYWK 333
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle
dysfunction, inhibitor design, allosteric enzyme,
alternative splicing, CGMP binding; HET: WAN; 2.00A
{Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A
2k31_A*
Length = 878
Score = 201 bits (512), Expect = 8e-60
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 7/180 (3%)
Query: 29 NTSVLENHHWRSAVGCLL--ESNVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRFK 85
S++E+HH+ + L + + L + I ILATD+ + F
Sbjct: 680 CHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFF 739
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER-Q 144
+ +L + L + + D+S +PW + ++ ++ V EFF QGD ER +
Sbjct: 740 ELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRERKE 799
Query: 145 LNLPVTSLCDR-HSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 203
LN+ T L +R IP +Q GF + L+E + ++ R N+ KW+
Sbjct: 800 LNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSED--CFPLLDGCRKNRQKWQ 857
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation,
glutamine switch, hydrolase-hydrolase inhibitor CO; HET:
PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Length = 533
Score = 195 bits (496), Expect = 2e-59
Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 6/178 (3%)
Query: 29 NTSVLENHHWRSAVGCLL--ESNVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRFK 85
+ S LENHH A L E N+ + ++ Q + +LILATD+ R E + FK
Sbjct: 317 DISPLENHHCAVAFQILAEPECNIFSNIPPDGFKQIRQGMITLILATDMARHAEIMDSFK 376
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+++ D S E + I +KC DISN RP +V++ W + EE+F Q D E+
Sbjct: 377 EKMENF--DYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKSE 434
Query: 146 NLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 203
LPV DR + + GF KFV+ P+FE + + M+ L ++ ++E
Sbjct: 435 GLPVAPFMDRDKVTKATAEIGFIKFVLIPMFETVTKLFP-MVEEIMLQPLWESRDRYE 491
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor
selectivity, CAMP phosphodiesterase, hydrolase; HET:
IBM; 1.50A {Leishmania major}
Length = 359
Score = 184 bits (469), Expect = 5e-57
Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 6/181 (3%)
Query: 27 SANTSVLENHHWRSAVGCLL--ESNVAEQL-GSIRPELEQQISSLILATDITRQQEFLTR 83
S N SVLE HH A+ L ++V E L G + + +LATD+ + + L+R
Sbjct: 166 SGNNSVLEVHHCSLAIEILSDPAADVFEGLSGQDVAYAYRALIDCVLATDMAKHADALSR 225
Query: 84 FKAYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER 143
F SG + R +++ +K D+SN +P++ S+ W+ V EEF+RQGD E+
Sbjct: 226 FTELATSG-FEKDNDTHRRLVMETLIKAGDVSNVTKPFETSRMWAMAVTEEFYRQGDMEK 284
Query: 144 QLNLPVTSLCDR-HSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKW 202
+ + V + DR + + + Q GF FV F + L + + + N+AKW
Sbjct: 285 EKGVEVLPMFDRSKNNELARGQIGFIDFVAGKFFRDIVGNLFHGMQW-CVDTVNSNRAKW 343
Query: 203 E 203
+
Sbjct: 344 Q 344
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 3e-04
Identities = 32/204 (15%), Positives = 63/204 (30%), Gaps = 52/204 (25%)
Query: 59 PELEQQISSLILATDITRQQEFLTRFKAYLD----------SGSLD-LSKAEDRHFILQI 107
P + L+ ++ L + + SL+ L AE R ++
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 108 AL--KCADISNP--CRPW-DVSKKWSQKVCEEFFRQGDYERQLNLPVTSLCDR------- 155
++ A I W DV K V + + E+Q S+
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 156 -------HSTSIPK--IQTGFFKFVVSPLFEE--WHRFLDTKLSTSMMG-HLRGNQA--K 201
H + + I F + P + + ++ + G HL+ + +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI---------GHHLKNIEHPER 489
Query: 202 WEGFFKFVVSPLFEEWHRFLDTKL 225
F +F ++ RFL+ K+
Sbjct: 490 MTLF-----RMVFLDF-RFLEQKI 507
Score = 39.1 bits (90), Expect = 0.001
Identities = 30/202 (14%), Positives = 61/202 (30%), Gaps = 51/202 (25%)
Query: 32 VLEN----HHWRS-AVGC--LL---ESNVAEQLGSI---RPELEQQISSLILATDITRQQ 78
VL N W + + C LL V + L + L+ +L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-------TPD 301
Query: 79 EFLTRFKAYLDSGSLDLSKAEDRHFILQIALKCADISN-PCRPWDVSKKWSQKVCEEFFR 137
E + YLD DL + ++++ I + WD ++
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WD------------NWK 348
Query: 138 QGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRG 197
+ ++ + +SL + + + F + V F + T ++ +
Sbjct: 349 HVNCDKLTTIIESSL---NVLEPAEYRKMFDRLSV---FPP-----SAHIPTILLSLI-- 395
Query: 198 NQAKWEGFFKFVVSPLFEEWHR 219
W K V + + H+
Sbjct: 396 ----WFDVIKSDVMVVVNKLHK 413
Score = 30.6 bits (68), Expect = 0.56
Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 25/135 (18%)
Query: 93 LDLSKAEDRHF---ILQIALK-------CADISNPCRPWDVSKKWSQKVCEEFFRQGDYE 142
+D E ++ IL + C D+ + + S++ + D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS-----ILSKEEIDHIIMSKDAV 61
Query: 143 RQLNLPVTSLCDRHSTSIPK-IQTGF---FKFVVSPLFEEWH-RFLDTKLSTSMMGHL-R 196
+L + + K ++ +KF++SP+ E + T++ L
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 197 GNQAKWEGFFKFVVS 211
NQ F K+ VS
Sbjct: 122 DNQV----FAKYNVS 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.37
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 14/68 (20%)
Query: 50 VAEQLGSIRPELEQQISSLILATDITRQQ-------EFLTRFKAYLDSGSLDLSKAEDRH 102
+A QL + EQ L T+ E + +F Y+ S ++ SK
Sbjct: 29 IASQL---Q---EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS-LVEPSKVGQFD 81
Query: 103 FILQIALK 110
+L + L
Sbjct: 82 QVLNLCLT 89
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 0.56
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 18/57 (31%)
Query: 185 TKLSTSMMGHLRGNQAKWEGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 241
+ MM HL ++ V K + GH +G W
Sbjct: 1355 SATINEMMKHLGRSEGNPV----IGVF-----------QK---FLTGHPKGAAGAWM 1393
Score = 29.1 bits (65), Expect = 1.7
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 11/58 (18%)
Query: 156 HSTSIP---KIQTGFFKFVVSPLFEEWHRFLDTKL---ST-SMMGHLRGNQAKWEGFF 206
H TS K ++ ++ + + R + + GH +G W
Sbjct: 1343 HGTSTKANDKNESA----TINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNG 1396
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino
acid biosynthesis, DHQS, O form J, domain movement,
cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans}
SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A*
1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Length = 393
Score = 28.5 bits (64), Expect = 2.0
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 41 AVGCLLESNVAEQLGSIRPELEQQISSLILA 71
A+G + E+ +A LG ++ +I + A
Sbjct: 292 AIGMVKEAELARHLGILKGVAVSRIVKCLAA 322
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside,
2-deoxystreptamine, dehydroquinate synthase, lyase; HET:
NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Length = 368
Score = 27.3 bits (61), Expect = 4.7
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 10/102 (9%)
Query: 41 AVGCLLESNVAEQLGSIRPELEQQISSLI----LATDITRQ---QEFLTRFKAYLDSGSL 93
AVG + + +A ++ + L+ DI + D+
Sbjct: 267 AVGMIYAAKIANRMNLMPEHDVSAHYWLLNKIGALQDIPLKSDPDSIFHYLI--HDNKRG 324
Query: 94 DLSKAEDR-HFILQIALKCADISNPCRPWDVSKKWSQKVCEE 134
+ ED IL + + N V K ++V E
Sbjct: 325 YIKLDEDNLGMILLSGVGKPAMYNQTLLTPVRKTLIKEVIRE 366
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid
biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm,
lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Length = 343
Score = 27.3 bits (61), Expect = 5.6
Identities = 20/97 (20%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 41 AVGCLLESNVAEQLGSIRPELEQQISSLILATDITRQQEFLTRFKAYLDSGSLDLSKAED 100
A+G + +++A LG + + ++I +L+ D+ + L + + + LD K+E+
Sbjct: 253 AIGMRMANDLALSLGMLTLKEYERIENLLKKFDLIFHYKILD-LQKFYERLFLD-KKSEN 310
Query: 101 R--HFILQIALKCADISNPCRPWDVSKKWSQKVCEEF 135
+ FIL + ++++ + K+ KV E++
Sbjct: 311 KTIKFILPKGVGAFEVAS-----HIPKETIIKVLEKW 342
>3okf_A 3-dehydroquinate synthase; structural genomics, center for
structural genomics of infec diseases, csgid, NAD,
lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Length = 390
Score = 26.9 bits (60), Expect = 7.2
Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 41 AVGCLLESNVAEQLGSIRPELEQQISSLILATDI-TRQQEFLTRFKAYLDSGSLDLSKAE 99
+ G ++ + A+ G I ++I +++ + R E +T F ++ D K
Sbjct: 297 SAGTVMAAKTAQLQGLIDASQFERILAILKKAHLPVRTPENMT-FADFMQHMMRD-KKVL 354
Query: 100 D--RHFILQIALKCADISNPCRPWDVSKKWSQKVCEEF 135
+L ++ + + V + + E
Sbjct: 355 AGELRLVLPTSIGTSAVVK-----GVPEAVIAQAIEYC 387
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.39.1.16
Length = 99
Score = 25.4 bits (55), Expect = 9.6
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 118 CRPWDVSKKWSQKVCEEFFRQGDYER 143
R + +C + F ++
Sbjct: 46 VRRKNFVPGKHTFLCSKHFEASCFDL 71
>3mkb_B Hemoglobin subunit beta; oxygen affinity, shortfin MAK storage,
oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus}
Length = 136
Score = 26.0 bits (56), Expect = 9.7
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 8/89 (8%)
Query: 130 KVCEEFFRQGDYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLST 189
V +E + ++ H+ + I G F + E +
Sbjct: 56 IVVGALQDAVKHEDDVKAEFVNISKAHADKL-HIDPGSFHLLTDSFIVELAHLKKVAFTP 114
Query: 190 SMMGHLRGNQAKWEGFFKFVVSPLFEEWH 218
+ A W FF+ V+ + ++H
Sbjct: 115 FV-------FAVWIKFFQVVIDAISSQYH 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.417
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,752,929
Number of extensions: 200911
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 47
Length of query: 249
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,160,982
Effective search space: 657435156
Effective search space used: 657435156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)