RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13496
(249 letters)
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic
phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId:
9606]}
Length = 415
Score = 165 bits (418), Expect = 2e-49
Identities = 59/229 (25%), Positives = 91/229 (39%), Gaps = 19/229 (8%)
Query: 29 NTSVLENHHWRSAVGCLLESNVAEQLGSIRPE----LEQQISSLILATDITRQQEFLTRF 84
+ SVLENHH SA L L + + ILATD+ + +FL F
Sbjct: 188 DRSVLENHHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKHFDFLAEF 247
Query: 85 KA---YLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDY 141
A ++S ++ S DR + Q+ +K ADI+ P + D+ KW++ + EF+ QGD
Sbjct: 248 NAKANDVNSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQGDE 307
Query: 142 ERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAK 201
E L LP++ DR S + K+Q F +V PL + L + N +
Sbjct: 308 EANLGLPISPFMDRSSPQLAKLQESFITHIVGPLCNSYDAAGL--LPGQWLEAEEDNDTE 365
Query: 202 WEGFFKFVVSPLFEEWHRFLDT----------KLSTSMMGHLRGNQAKW 240
+E ++ +M HL N W
Sbjct: 366 SGDDEDGEELDTEDEEMENNLNPKPPRRKSRRRIFCQLMHHLTENHKIW 414
>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide
phosphodiesterase pde4d {Human (Homo sapiens) [TaxId:
9606]}
Length = 326
Score = 152 bits (386), Expect = 2e-45
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 10/184 (5%)
Query: 29 NTSVLENHHWRSAVGCLLES--NVAEQL-GSIRPELEQQISSLILATDITRQQEFLTRFK 85
++SVLENHH L E ++ + L R L + + ++LATD+++ L K
Sbjct: 140 DSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK 199
Query: 86 AYLD------SGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQG 139
++ SG L L DR +LQ + CAD+SNP +P + ++W+ ++ EEFFRQG
Sbjct: 200 TMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQG 259
Query: 140 DYERQLNLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQ 199
D ER+ + ++ +CD+H+ S+ K Q GF ++V PL+E W + ++ L N+
Sbjct: 260 DRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQ-DILDTLEDNR 318
Query: 200 AKWE 203
++
Sbjct: 319 EWYQ 322
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase
pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}
Length = 326
Score = 152 bits (384), Expect = 4e-45
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 7/180 (3%)
Query: 29 NTSVLENHHWRSAVGCLLESNVAEQLGSIRPE---LEQQISSLILATDITRQQEFLTRFK 85
+ SVLE+HH+ + L G E + I ILATD+ + F
Sbjct: 145 DESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFF 204
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYER-Q 144
+ +L + L + + D+S +PW + ++ ++ V EFF QGD ER +
Sbjct: 205 ELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRERKE 264
Query: 145 LNLPVTSLCDR-HSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 203
LN+ T L +R IP +Q GF + L+E + ++ R N+ KW+
Sbjct: 265 LNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSED--CFPLLDGCRKNRQKWQ 322
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 151 bits (382), Expect = 6e-45
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 6/178 (3%)
Query: 29 NTSVLENHHWRSAVGCLLESNVAEQLG---SIRPELEQQISSLILATDITRQQEFLTRFK 85
+ S LENHH A L E ++ Q + +LILATD+ R E + FK
Sbjct: 136 DISPLENHHCAVAFQILAEPECNIFSNIPPDGFKQIRQGMITLILATDMARHAEIMDSFK 195
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
+++ D S E + I +KC DISN RP +V++ W + EE+F Q D E+
Sbjct: 196 EKMEN--FDYSNEEHMTLLKMILIKCCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKSE 253
Query: 146 NLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWE 203
LPV DR + Q GF KFV+ P+FE + + M+ L ++ ++E
Sbjct: 254 GLPVAPFMDRDKVTKATAQIGFIKFVLIPMFETVTKLF-PMVEEIMLQPLWESRDRYE 310
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 147 bits (372), Expect = 4e-43
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 9/215 (4%)
Query: 29 NTSVLENHHWRSAVGCLLESNVAEQLG---SIRPELEQQISSLILATDITRQQEFLTRFK 85
+ SVLENHH S + + + + EL + ++LATD++ + + K
Sbjct: 143 DRSVLENHHISSVFRLMQDDEMNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMK 202
Query: 86 AYLDSGSLDLSKAEDRHFILQIALKCADISNPCRPWDVSKKWSQKVCEEFFRQGDYERQL 145
L + D+ L + L ADIS+P + W V +W++ + EEFFRQGD E +L
Sbjct: 203 TALQQL-----ERIDKPKALSLLLHAADISHPTKQWLVHSRWTKALMEEFFRQGDKEAEL 257
Query: 146 NLPVTSLCDRHSTSIPKIQTGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEGF 205
LP + LCDR ST + + Q GF F+V P F + + + ++ +
Sbjct: 258 GLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKSV-QPLADEDSKSKNQPSFQ 316
Query: 206 FKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKW 240
++ + ++ + ++ N+ KW
Sbjct: 317 WRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQKW 351
>d1ev13_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
echovirus 1 [TaxId: 46633]}
Length = 239
Score = 25.5 bits (56), Expect = 5.7
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 206 FKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEGTDIFKF 248
F F ++P ++ ++ ++MG + A W G+ F
Sbjct: 84 FGFQLNPG-------AESVMNRTLMGEILNYYAHWSGSIKITF 119
>d1d4m3_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 238
Score = 25.6 bits (56), Expect = 6.6
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 198 NQAKWEGFFKFVVSPLFEEWHRFLDTKLSTSMMGHLRGNQAKWEGTDIFKF 248
N + F + P LD+ +++G + A W G+ F
Sbjct: 75 NAPLQQQVFGLRLQPG-------LDSVFKHTLLGEILNYYAHWSGSMKLTF 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.417
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 939,740
Number of extensions: 40758
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 11
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)