BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13497
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IRP|A Chain A, Crystal Structure Of The L-fuculose-1-phosphate Aldolase
(aq_1979) From Aquifex Aeolicus Vf5
pdb|2IRP|B Chain B, Crystal Structure Of The L-fuculose-1-phosphate Aldolase
(aq_1979) From Aquifex Aeolicus Vf5
Length = 208
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 49/234 (20%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDE-IYIAPSGVQKERLTSKDLFVQDMEGKDL--Q 77
I E + + GWV T G ++ K+ +E I I SG K +LT +D+ + D EG+ +
Sbjct: 16 IIEAGRILHSRGWVPATSGNISAKVSEEYIAITASGKHKGKLTPEDILLIDYEGRPVGGG 75
Query: 78 LPEDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIF 137
P +TL + LF AV+HTHS A +++ I
Sbjct: 76 KPSAETLLHTTVYKLF------PEVNAVVHTHSPNATVIS------------------IV 111
Query: 138 QLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIENTPQE 197
+ K FV+ L A+ + ++ ++ +PI N
Sbjct: 112 EKKDFVELEDYELLKAFP----------------------DIHTHEVKIKIPIFPNEQNI 149
Query: 198 KDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSM 251
L +E L+R HG+Y WG + TE +++FE + +
Sbjct: 150 PLLAKEVENYFKTSEDKYGFLIRGHGLYTWGRSXEEALIHTEALEFIFECELKL 203
>pdb|1E47|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73q
Length = 215
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG GT G ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 65
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L SQ M +Y R +A AV+H H+ V++L
Sbjct: 66 EGKLPSSQWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
>pdb|1E48|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73qY113FY209F
Length = 215
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG GT G ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 65
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L SQ M +Y R +A AV+H H+ V++L
Sbjct: 66 EGKLPSSQWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
>pdb|1E4C|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant S71q
Length = 215
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG GT G ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 65
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L +S+ M +Y R +A AV+H H+ V++L
Sbjct: 66 EGKLPQSEWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
>pdb|1FUA|A Chain A, L-Fuculose 1-Phosphate Aldolase Crystal Form T
pdb|2FUA|A Chain A, L-Fuculose 1-Phosphate Aldolase Crystal Form T With Cobalt
pdb|3FUA|A Chain A, L-Fuculose-1-Phosphate Aldolase Crystal Form K
pdb|4FUA|A Chain A, L-fuculose-1-phosphate Aldolase Complex With Pgh
Length = 215
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG GT G ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 65
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L S+ M +Y R +A AV+H H+ V++L
Sbjct: 66 EGKLPSSEWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
>pdb|1DZY|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant E214a
Length = 215
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG GT G ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 65
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L S+ M +Y R +A AV+H H+ V++L
Sbjct: 66 EGKLPSSEWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
>pdb|1DZZ|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant Y113f
Length = 215
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG GT G ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 65
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L S+ M +Y R +A AV+H H+ V++L
Sbjct: 66 EGKLPSSEWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
>pdb|1DZX|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant R212a
Length = 215
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG GT G ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 65
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L S+ M +Y R +A AV+H H+ V++L
Sbjct: 66 EGKLPSSEWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
>pdb|1DZV|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant Y113fY209F
Length = 215
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG GT G ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 65
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L S+ M +Y R +A AV+H H+ V++L
Sbjct: 66 EGKLPSSEWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
>pdb|1DZW|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant F131a
Length = 215
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG GT G ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 65
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L S+ M +Y R +A AV+H H+ V++L
Sbjct: 66 EGKLPSSEWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
>pdb|1E46|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73s
Length = 215
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG GT G ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 65
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L S M +Y R +A AV+H H+ V++L
Sbjct: 66 EGKLPSSSWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
>pdb|1E4B|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant N29q
Length = 215
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG GT G ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGTAGQVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 65
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L S+ M +Y R +A AV+H H+ V++L
Sbjct: 66 EGKLPSSEWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
>pdb|1E49|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant N29lS71A
Length = 215
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG GT G ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGTAGLVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 65
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L S+ M +Y R +A AV+H H+ V++L
Sbjct: 66 EGKLPASEWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
>pdb|1DZU|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant T26a
Length = 215
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG G G ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGAAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 65
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L S+ M +Y R +A AV+H H+ V++L
Sbjct: 66 EGKLPSSEWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
>pdb|2FK5|A Chain A, Crystal Structure Of L-Fuculose-1-Phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FK5|B Chain B, Crystal Structure Of L-Fuculose-1-Phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|A Chain A, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|B Chain B, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|C Chain C, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|D Chain D, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|E Chain E, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|F Chain F, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|G Chain G, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|H Chain H, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
Length = 200
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 23 ELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDK 82
++ + + G ++ T G +++ I SGVQK RLT +DL +EG +PE
Sbjct: 11 QVGEDLFAQGLISATAGNFSVRTKGGFLITKSGVQKARLTPEDLLEVPLEGP---IPEGA 67
Query: 83 TLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVT 117
+++ + + Y A A++H H + AV ++
Sbjct: 68 SVE----SVVHREVYRRTGARALVHAHPRVAVALS 98
>pdb|1E4A|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant Del(27)
Length = 214
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 21 IPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPE 80
I + C + LG GTG ++++ D + I P+G+ E+LT + D GK E
Sbjct: 10 IIDTCLEMTRLGLNQGTGN-VSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKH----E 64
Query: 81 DKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+ L S+ M +Y R +A AV+H H+ V++L
Sbjct: 65 EGKLPSSEWR-FHMAAYQSRPDANAVVHNHAVHCTAVSIL 103
>pdb|4AV7|A Chain A, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|B Chain B, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|C Chain C, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|D Chain D, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|E Chain E, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|F Chain F, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
Length = 668
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 189 PIIEN--TPQEKDLRDS------LERALVEFPSTSAVLVRRHGVYVWGGDWKST--KTQT 238
P + N TP+ ++RD+ ++ +L ++ + VL+++H VWGGD T Q
Sbjct: 314 PAMHNLLTPRGAEVRDAKAWAGYIDASLEKYGDRTDVLIQQHNWPVWGGDKVRTYLADQR 373
Query: 239 ECYDYLFELAVSMKQLGL 256
+ Y +L A+++ GL
Sbjct: 374 DMYAFLNNRALNLMNKGL 391
>pdb|2YHE|A Chain A, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|B Chain B, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|C Chain C, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|D Chain D, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|E Chain E, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|F Chain F, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|4AXH|A Chain A, Structure And Mechanism Of The First Inverting
Alkylsulfatase Specific For Secondary Alkylsulfatases
pdb|4AXH|B Chain B, Structure And Mechanism Of The First Inverting
Alkylsulfatase Specific For Secondary Alkylsulfatases
Length = 668
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 189 PIIEN--TPQEKDLRDS------LERALVEFPSTSAVLVRRHGVYVWGGDWKST--KTQT 238
P + N TP+ ++RD+ ++ +L ++ + VL+++H VWGGD T Q
Sbjct: 314 PAMHNLLTPRGAEVRDAKAWAGYIDASLEKYGDRTDVLIQQHNWPVWGGDKVRTYLADQR 373
Query: 239 ECYDYLFELAVSMKQLGL 256
+ Y +L A+++ GL
Sbjct: 374 DMYAFLNNRALNLMNKGL 391
>pdb|1K0W|A Chain A, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|B Chain B, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|C Chain C, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|D Chain D, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|E Chain E, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|F Chain F, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
Length = 231
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 51 IAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTPLFMCSY-TLRNAGAVIHTH 109
I PSGV +T+ D+ V +E ++ + K S TP Y + G ++HTH
Sbjct: 41 IKPSGVDYSIMTADDMVVVSIETGEVV---EGAKKPSSDTPTHRLLYQAFPSIGGIVHTH 97
Query: 110 SKAAVL 115
S+ A +
Sbjct: 98 SRHATI 103
>pdb|1JDI|A Chain A, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|B Chain B, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|C Chain C, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|D Chain D, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|E Chain E, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|F Chain F, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
Length = 231
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 51 IAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTPLFMCSY-TLRNAGAVIHTH 109
I PSGV +T+ D+ V +E ++ + K S TP Y + G ++HTH
Sbjct: 41 IKPSGVDYSIMTADDMVVVSIETGEVV---EGAKKPSSDTPTHRLLYQAFPSIGGIVHTH 97
Query: 110 SKAAVL 115
S+ A +
Sbjct: 98 SRHATI 103
>pdb|1PVT|A Chain A, Crystal Structure Of Sugar-phosphate Aldolase From
Thermotoga Maritima
Length = 238
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 215 SAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQLGLNPLSPP 262
AVL +HGV +G D + E + E+ + + LG NP P
Sbjct: 187 DAVLWDKHGVVAFGKDVAEAYDRVEILEKAAEILLRVLSLGRNPTGVP 234
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
Length = 800
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 183 DEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWG 228
D V + E + +LRD LERA+++ P VLVR GV G
Sbjct: 386 DSAPVQALREKMGEFAELRDLLERAIIDTPP---VLVRDGGVIASG 428
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 183 DEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWG 228
D V + E + +LRD LERA+++ P VLVR GV G
Sbjct: 386 DSAPVQALREKMGEFAELRDLLERAIIDTPP---VLVRDGGVIASG 428
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 183 DEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWG 228
D V + E + +LRD LERA+++ P VLVR GV G
Sbjct: 386 DSAPVQALREKMGEFAELRDLLERAIIDTPP---VLVRDGGVIASG 428
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 183 DEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWG 228
D V + E + +LRD LERA+++ P VLVR GV G
Sbjct: 386 DSAPVQALREKMGEFAELRDLLERAIIDTPP---VLVRDGGVIASG 428
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 183 DEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWG 228
D V + E + +LRD LERA+++ P VLVR GV G
Sbjct: 386 DSAPVQALREKMGEFAELRDLLERAIIDTPP---VLVRDGGVIASG 428
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 157 SNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIEN 193
+ F +A + + G W TL Y Y EE ++P++++
Sbjct: 182 AGAFSLALKILDNGEWTPTLQHYLSYTEESLLPVMQH 218
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
Length = 799
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 183 DEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWG 228
D V + E + +LRD LERA+++ P VLVR GV G
Sbjct: 385 DSAPVQALREKMGEFAELRDLLERAIIDTPP---VLVRDGGVIASG 427
>pdb|2QL1|A Chain A, Structural Characterization Of A Mutated, Adcc-Enhanced
Human Fc Fragment
Length = 225
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 71 MEGKDLQLPEDKTLKKSQCTPLFMCSYTLRNAG-AVIHTHSKAAVLVTMLYPGNVSIE 127
+ K L LPE+KT+ K++ P YTL + + LV YP ++++E
Sbjct: 101 VSNKALPLPEEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVE 158
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
Length = 800
Score = 27.7 bits (60), Expect = 7.6, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 183 DEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWG 228
D V + E + +LRD LERA+++ P VLVR GV G
Sbjct: 386 DSAPVQALREKXGEFAELRDLLERAIIDTP---PVLVRDGGVIASG 428
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,177,395
Number of Sequences: 62578
Number of extensions: 340061
Number of successful extensions: 855
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 38
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)