Query psy13497
Match_columns 262
No_of_seqs 141 out of 1083
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 20:53:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e4c_P L-fuculose 1-phosphate 100.0 1.8E-47 6.1E-52 331.3 22.0 188 12-257 1-190 (215)
2 2irp_A Putative aldolase class 100.0 6.6E-46 2.3E-50 319.7 21.4 196 15-255 10-207 (208)
3 2opi_A L-fuculose-1-phosphate 100.0 1.6E-45 5.6E-50 318.3 21.0 184 12-257 1-191 (212)
4 2fk5_A Fuculose-1-phosphate al 100.0 5.2E-45 1.8E-49 312.7 18.7 184 14-258 2-193 (200)
5 1k0w_A L-ribulose 5 phosphate 100.0 6.6E-45 2.3E-49 318.3 19.6 203 15-260 3-209 (231)
6 3ocr_A Class II aldolase/adduc 100.0 2.8E-44 9.5E-49 321.5 22.2 194 13-261 30-230 (273)
7 1pvt_A Sugar-phosphate aldolas 100.0 5.5E-43 1.9E-47 307.4 18.1 196 15-261 4-233 (238)
8 2v9l_A Rhamnulose-1-phosphate 100.0 4.3E-42 1.5E-46 307.7 20.2 199 12-259 4-249 (274)
9 2z7b_A MLR6791 protein; class 100.0 3.6E-42 1.2E-46 307.5 19.6 184 15-259 39-236 (270)
10 3m4r_A Uncharacterized protein 100.0 3.3E-39 1.1E-43 280.8 13.0 174 18-256 17-222 (222)
11 2dsy_A Hypothetical protein TT 61.3 14 0.00049 26.1 5.0 29 222-253 37-65 (87)
12 2o5a_A BH1328 protein; BHR21, 53.9 37 0.0013 25.9 6.5 50 197-246 3-60 (125)
13 1odm_A Isopenicillin N synthas 48.8 22 0.00074 31.4 5.1 36 198-241 26-61 (331)
14 2id1_A Hypothetical protein; a 48.0 43 0.0015 25.7 6.1 50 197-246 3-60 (130)
15 3ups_A Iojap-like protein; PSI 36.1 1.2E+02 0.0042 23.3 7.0 53 195-247 17-77 (136)
16 3on7_A Oxidoreductase, iron/as 27.5 31 0.001 29.7 2.4 33 187-224 3-35 (280)
17 3tb5_A Methionine aminopeptida 25.4 19 0.00063 30.5 0.6 33 38-70 224-256 (264)
18 2yzt_A Putative uncharacterize 23.2 54 0.0019 21.7 2.6 26 222-251 25-50 (67)
19 3kwr_A Putative RNA-binding pr 22.8 53 0.0018 23.8 2.6 26 223-251 31-56 (97)
20 3oox_A Putative 2OG-Fe(II) oxy 20.0 41 0.0014 29.3 1.8 35 187-224 6-43 (312)
No 1
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=100.00 E-value=1.8e-47 Score=331.26 Aligned_cols=188 Identities=22% Similarity=0.315 Sum_probs=165.7
Q ss_pred CCcchHHhHHHHHHHHHHHcCCcccCCCceeEEeCCeEEEccCCCCCCCCCCCCEEEEeCCCCeecCCCCCCCCCCCcHH
Q psy13497 12 SHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTP 91 (262)
Q Consensus 12 ~~~~~~r~~l~~~~r~l~~~gl~~~~~GniSvR~~d~~lItpsG~~~~~l~~~div~vd~dg~~v~g~~~~~~~pS~E~~ 91 (262)
|..+++|++|++++|+|+++||+.+++||||+|+++.|||||||.++++++++||++||+||++++|. +||+|+.
T Consensus 1 m~~~~~r~~l~~~~r~l~~~gl~~~~~GNiS~R~~~~~lItpsG~~~~~l~~~dlv~vd~~G~~~~g~-----~pSse~~ 75 (215)
T 1e4c_P 1 MERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKHEEGK-----LPQSEWR 75 (215)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCCTTCCEEEEEETTEEEECCTTCCGGGCCGGGCEEECTTCCBCTTC-----CCCTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHCcCCCCCCCeEEEEeCCcEEEeCCCCCcccCCHHHEEEEcCCCCCCCCC-----CCChHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999873 5999999
Q ss_pred HHHHHHhhC-CccEEEEcCchHHHHHHhccCCCcchhhhhccccchhhhhhhhhhhhhhhhhhhcccceeecchHHHHhc
Q psy13497 92 LFMCSYTLR-NAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKG 170 (262)
Q Consensus 92 lH~~Iy~~r-dv~aViHtH~~~~~a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 170 (262)
+|+.||++| |++||+|+||+|+++||++.. ++|+ ++++...++.
T Consensus 76 lH~~iy~~rpdv~aVvHtHs~~~~a~s~~~~---~l~~-------------------~~~~~~~~~~------------- 120 (215)
T 1e4c_P 76 FHMAAYQSRPDANAVVHNHAVHCTAVSILNR---SIPA-------------------IHYMIAAAGG------------- 120 (215)
T ss_dssp HHHHHHHHCTTCCEEEEECCHHHHHHHHHTC---CBCS-------------------SSGGGGGGTS-------------
T ss_pred HHHHHHHhCCCCCEEEEcCcHHHHHHHHhCC---CCCc-------------------ccHHHHHhCC-------------
Confidence 999999999 999999999999999999963 3332 2222221110
Q ss_pred cccccCcccccCCCceeeeeecC-CCCcHHHHHHHHHHHhcCCCCcEEEEcCCcceEecCCHHHHHHHHHHHHHHHHHHH
Q psy13497 171 TWNSTLGRYNRYDEELVVPIIEN-TPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAV 249 (262)
Q Consensus 171 ~~~~~~g~~~~~~~~~~vp~~~~-~~gs~ela~~v~~~l~~~~~~~avll~nHG~~~~G~sl~eA~~~~e~lE~~a~~~~ 249 (262)
..||+++| .+|+.+|++.+++++++ .+++||+|||+++||+|+++|+++++.+|++|++++
T Consensus 121 ---------------~~ip~~~y~~~g~~~la~~i~~~l~~---~~avll~nHG~~~~G~~~~eA~~~~~~lE~~a~~~~ 182 (215)
T 1e4c_P 121 ---------------NSIPCAPYATFGTRELSEHVALALKN---RKATLLQHHGLIACEVNLEKALWLAHEVEVLAQLYL 182 (215)
T ss_dssp ---------------SCBCEECCCCTTCHHHHHHHHHHTSS---CSEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCcceeeCCCCCcHHHHHHHHHHhcc---CCEEEEcCCCcEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 13666766 68999999999999986 799999999999999999999999999999999999
Q ss_pred HHHhcCCC
Q psy13497 250 SMKQLGLN 257 (262)
Q Consensus 250 ~a~~~G~~ 257 (262)
.++++|.+
T Consensus 183 ~a~~~g~~ 190 (215)
T 1e4c_P 183 TTLAITDP 190 (215)
T ss_dssp HHHTTCSS
T ss_pred HHHHcCCC
Confidence 99999976
No 2
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic mechanism; 2.40A {Aquifex aeolicus}
Probab=100.00 E-value=6.6e-46 Score=319.73 Aligned_cols=196 Identities=26% Similarity=0.415 Sum_probs=166.0
Q ss_pred chHHhHHHHHHHHHHHcCCcccCCCceeEEeC-CeEEEccCCCCCCCCCCCCEEEEeCCCCeecCCCCCCCCCCCcHHHH
Q psy13497 15 EHPRNLIPELCKQFYHLGWVTGTGGGMTIKLG-DEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTPLF 93 (262)
Q Consensus 15 ~~~r~~l~~~~r~l~~~gl~~~~~GniSvR~~-d~~lItpsG~~~~~l~~~div~vd~dg~~v~g~~~~~~~pS~E~~lH 93 (262)
+++|++|++++|+|+++||+.+++||||+|++ +.|||||||.++++++++||++||+||+++ +. .+||+|+.+|
T Consensus 10 ~~~r~~l~~~~r~l~~~gl~~~~~GNiS~R~~~~~~~ItpsG~~~~~l~~~dlv~vd~~g~~v-~~----~~pSse~~lH 84 (208)
T 2irp_A 10 SEKVEEIIEAGRILHSRGWVPATSGNISAKVSEEYIAITASGKHKGKLTPEDILLIDYEGRPV-GG----GKPSAETLLH 84 (208)
T ss_dssp HHHHHHHHHHHHHHHHTTCSGGGCCEEEEECSSSEEEEECTTSCGGGCCGGGEEEEETTSCBT-TS----CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCeEEEEeCCCEEEEecCCCCcccCCcccEEEEcCCCCCC-CC----CCCCccHHHH
Confidence 57899999999999999999999999999998 579999999999999999999999999988 42 5899999999
Q ss_pred HHHHhhC-CccEEEEcCchHHHHHHhccCCCcchhhhhccccchhhhhhhhhhhhhhhhhhhcccceeecchHHHHhccc
Q psy13497 94 MCSYTLR-NAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTW 172 (262)
Q Consensus 94 ~~Iy~~r-dv~aViHtH~~~~~a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 172 (262)
..||++| |++||+|+||+|+++||++.+.. ++| ...++++..+.
T Consensus 85 ~~iy~~rpdv~aVvHtHs~~a~a~s~~~~~~-~lp----------------------------------~~~~~~~~~~~ 129 (208)
T 2irp_A 85 TTVYKLFPEVNAVVHTHSPNATVISIVEKKD-FVE----------------------------------LEDYELLKAFP 129 (208)
T ss_dssp HHHHHHCTTCCEEEEECCHHHHHHHHHCCSS-EEE----------------------------------CCCHHHHTTCT
T ss_pred HHHHHhCCCCCEEEecCCHHHHHHHhhcCCC-CCC----------------------------------ccHHHHHHHhC
Confidence 9999999 99999999999999999986321 222 22233333221
Q ss_pred cccCcccccCCCceeeeeecCCCCcHHHHHHHHHHHhcCCCCcEEEEcCCcceEecCCHHHHHHHHHHHHHHHHHHHHHH
Q psy13497 173 NSTLGRYNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMK 252 (262)
Q Consensus 173 ~~~~g~~~~~~~~~~vp~~~~~~gs~ela~~v~~~l~~~~~~~avll~nHG~~~~G~sl~eA~~~~e~lE~~a~~~~~a~ 252 (262)
+.. ++ +....||++++.+++++|++.+++++++.++.+++||+|||+++||+|+++|+++++.+|++|++++.++
T Consensus 130 g~~---~~--~~~~~vp~~~~~~g~~~La~~i~~~l~~~~~~~avll~nHG~~~~G~~~~eA~~~~~~lE~~a~~~~~~~ 204 (208)
T 2irp_A 130 DIH---TH--EVKIKIPIFPNEQNIPLLAKEVENYFKTSEDKYGFLIRGHGLYTWGRSMEEALIHTEALEFIFECELKLL 204 (208)
T ss_dssp TCC---CS--CSSCEEEEECCCSCHHHHHHHHHHHHHHCSCCSCEEETTTEEEEEESSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Ccc---cc--ccccceeeecCCCCHHHHHHHHHHHHhcCCCceEEEEcCCCCeEecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 00 1123689998888999999999999987544579999999999999999999999999999999999999
Q ss_pred hcC
Q psy13497 253 QLG 255 (262)
Q Consensus 253 ~~G 255 (262)
++|
T Consensus 205 ~~g 207 (208)
T 2irp_A 205 SFH 207 (208)
T ss_dssp TCC
T ss_pred hhC
Confidence 988
No 3
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-45 Score=318.29 Aligned_cols=184 Identities=17% Similarity=0.274 Sum_probs=160.7
Q ss_pred CCcchHHhHHHHHHHHHHHcCCcccCCCceeEEeCCeEEEccCCCCCCCCCCCCEEEEeC-CCCeecCCCCCCCCCCCcH
Q psy13497 12 SHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDM-EGKDLQLPEDKTLKKSQCT 90 (262)
Q Consensus 12 ~~~~~~r~~l~~~~r~l~~~gl~~~~~GniSvR~~d~~lItpsG~~~~~l~~~div~vd~-dg~~v~g~~~~~~~pS~E~ 90 (262)
|..+++|++|++++|+|+++||+.+++||||+|+++.|||||||.++++++++||++||+ ||++++|. +||+|+
T Consensus 1 m~~~~~r~~l~~~~r~l~~~gl~~~~~GNiS~R~~~~~lItpsG~~~~~l~~~dlv~vd~~~G~~~~g~-----~pSse~ 75 (212)
T 2opi_A 1 MITDEHIELFLAQAHRYGDAKLMLCSSGNLSWRIGEEALISGTGSWVPTLAKEKVSICNIASGTPTNGV-----KPSMES 75 (212)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSSCTTCCEEEEEETTEEEEEBTTCCGGGCCGGGEEEEETTTCCBSSSC-----CBCTTH
T ss_pred CccHHHHHHHHHHHHHHHHCCCCCCCCCeEEEEeCCeEEEeCCCCChhHCCCCcEEEEECCCCCCCCCC-----CCChhH
Confidence 345789999999999999999999999999999999999999999999999999999999 99999872 799999
Q ss_pred HHHHHHHhhC-CccEEEEcCchHHHHHHhccCC----CcchhhhhccccchhhhhhhhhhhhhhhhhhhcccceeecchH
Q psy13497 91 PLFMCSYTLR-NAGAVIHTHSKAAVLVTMLYPG----NVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQ 165 (262)
Q Consensus 91 ~lH~~Iy~~r-dv~aViHtH~~~~~a~a~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (262)
.+|+.||++| |++||+|+||+|+++||++.+. . .+|++
T Consensus 76 ~lH~~iy~~rpdv~aVvHtHs~~~~a~s~~~~~~~~~~-~lp~~------------------------------------ 118 (212)
T 2opi_A 76 TFHLGVLRERPDVNVVLHFQSEYATAISCMKNKPTNFN-VTAEI------------------------------------ 118 (212)
T ss_dssp HHHHHHHHHCTTCCEEEEECCHHHHHHHHBSSCCSCCC-CSTHH------------------------------------
T ss_pred HHHHHHHHhCCCCCEEEEeCcHHHHHHHhcCccccccc-cCchH------------------------------------
Confidence 9999999999 9999999999999999998631 1 22210
Q ss_pred HHHhccccccCcccccCCCceeeeeecC-CCCcHHHHHHHHHHHhcCCCCcEEEEcCCcceEecCCHHHHHHHHHHHHHH
Q psy13497 166 EMIKGTWNSTLGRYNRYDEELVVPIIEN-TPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYL 244 (262)
Q Consensus 166 ~~i~~~~~~~~g~~~~~~~~~~vp~~~~-~~gs~ela~~v~~~l~~~~~~~avll~nHG~~~~G~sl~eA~~~~e~lE~~ 244 (262)
.+. + | ..||+++| .+++.++++.+++++++ .+++||+|||+++||+|+++|+++++.+|++
T Consensus 119 ~~~--~-----g--------~~v~~~~y~~~g~~~la~~i~~~l~~---~~avll~nHG~~~~G~t~~eA~~~~~~lE~~ 180 (212)
T 2opi_A 119 PCH--V-----G--------SEIPVIPYYRPGSPELAKAVVEAMLK---HNSVLLTNHGQVVCGKDFDQVYERATFFEMA 180 (212)
T ss_dssp HHH--T-----C--------SCCCEECCCCTTCHHHHHHHHHHTSS---CSEEEETTTEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHH--h-----C--------CCeEEEcCCCCCcHHHHHHHHHHhcc---CCEEEEcCCCcEEEcCCHHHHHHHHHHHHHH
Confidence 111 0 1 14777776 58999999999999986 7999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy13497 245 FELAVSMKQLGLN 257 (262)
Q Consensus 245 a~~~~~a~~~G~~ 257 (262)
|++++.+ .|.+
T Consensus 181 a~~~~~a--~g~~ 191 (212)
T 2opi_A 181 CRIIVQS--GGDY 191 (212)
T ss_dssp HHHHHHT--TTCC
T ss_pred HHHHHHh--cCCC
Confidence 9999988 4533
No 4
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Probab=100.00 E-value=5.2e-45 Score=312.70 Aligned_cols=184 Identities=20% Similarity=0.232 Sum_probs=162.5
Q ss_pred cchHHhHHHHHHHHHHHcCCcccCCCceeEEeCCeEEEccCCCCCCCCCCCCEEEEeCCCCeecCCCCCCCCCCCcHHHH
Q psy13497 14 PEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTPLF 93 (262)
Q Consensus 14 ~~~~r~~l~~~~r~l~~~gl~~~~~GniSvR~~d~~lItpsG~~~~~l~~~div~vd~dg~~v~g~~~~~~~pS~E~~lH 93 (262)
++++|++|++++|+|+++||+.+++||||+|+++.|||||||.++++++++||++||+||+++ + +||+|+.+|
T Consensus 2 ~~~~r~~l~~~~r~l~~~Gl~~~~~GNiS~R~~~~~lItpsG~~~~~l~~~dlv~vd~~G~~~-~------~pSsE~~~H 74 (200)
T 2fk5_A 2 RARLYAAFRQVGEDLFAQGLISATAGNFSVRTKGGFLITKSGVQKARLTPEDLLEVPLEGPIP-E------GASVESVVH 74 (200)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCTTCCEEEEECSSEEEEEBTTCCGGGCCGGGEEEEESSSCCC-T------TBCTTHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEeCCCCCcccCCcccEEEEeCCCCCc-c------CCChhHHHH
Confidence 467999999999999999999999999999999999999999999999999999999999988 3 699999999
Q ss_pred HHHHhhCCccEEEEcCchHHHHHHhccCCCcchhhhhccccchhhhhhhhhhhhhhhhhhhcccceeecchHHHHhcccc
Q psy13497 94 MCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWN 173 (262)
Q Consensus 94 ~~Iy~~rdv~aViHtH~~~~~a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 173 (262)
..||++.|++||+|+||+|+++||+.. + ++|+ +++.+..++
T Consensus 75 ~~iy~~pdv~aVvHtHs~~a~a~s~~~--~-~l~~-------------------~~~~~~~~~----------------- 115 (200)
T 2fk5_A 75 REVYRRTGARALVHAHPRVAVALSFHL--S-RLRP-------------------LDLEGQHYL----------------- 115 (200)
T ss_dssp HHHHHHSCCSEEEEECCHHHHHHHTTC--S-EECC-------------------SSHHHHHHT-----------------
T ss_pred HHHHhCCCCCEEEecCCHHHHHHHhcC--C-CCCC-------------------ccHHHHHhC-----------------
Confidence 999999789999999999999999986 3 3432 222211110
Q ss_pred ccCcccccCCCceeeeee-cC-CCCcHHHHHHHHHHHhcCCCCcEEEEcCCcceEec------CCHHHHHHHHHHHHHHH
Q psy13497 174 STLGRYNRYDEELVVPII-EN-TPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWG------GDWKSTKTQTECYDYLF 245 (262)
Q Consensus 174 ~~~g~~~~~~~~~~vp~~-~~-~~gs~ela~~v~~~l~~~~~~~avll~nHG~~~~G------~sl~eA~~~~e~lE~~a 245 (262)
+.||++ +| .+++.++++.+++++++ .+++||+|||+++|| +|+++|+++++.+|++|
T Consensus 116 ------------~~ip~~~~y~~~g~~ela~~i~~~l~~---~~avll~nHG~~~~G~~~~~~~~~~eA~~~~~~lE~~a 180 (200)
T 2fk5_A 116 ------------KEVPVLAPKTVSATEEAALSVAEALRE---HRACLLRGHGAFAVGLKEAPEEALLEAYGLMTTLEESA 180 (200)
T ss_dssp ------------SCEEEECCSCCSSSHHHHHHHHHHHHH---CSEEEETTTEEEEEECCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCceEecCCCCCCcHHHHHHHHHHhCc---CCEEEECCCCcEEEeCCCCCcCcHHHHHHHHHHHHHHH
Confidence 147777 65 68999999999999987 799999999999999 99999999999999999
Q ss_pred HHHHHHHhcCCCC
Q psy13497 246 ELAVSMKQLGLNP 258 (262)
Q Consensus 246 ~~~~~a~~~G~~~ 258 (262)
++++.++++|.++
T Consensus 181 ~~~~~a~~~g~~~ 193 (200)
T 2fk5_A 181 QILLYHRLWQGAG 193 (200)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCC
Confidence 9999999998644
No 5
>1k0w_A L-ribulose 5 phosphate 4-epimerase; aldolase, isomerase; 2.10A {Escherichia coli} SCOP: c.74.1.1 PDB: 1jdi_A
Probab=100.00 E-value=6.6e-45 Score=318.27 Aligned_cols=203 Identities=20% Similarity=0.219 Sum_probs=160.5
Q ss_pred chHHhHHHHHHHHHHHcCCcccCCCceeEEeC--CeEEEccCCCCCCCCCCCCEEEEeCC-CCeecCCCCCCCCCCCcHH
Q psy13497 15 EHPRNLIPELCKQFYHLGWVTGTGGGMTIKLG--DEIYIAPSGVQKERLTSKDLFVQDME-GKDLQLPEDKTLKKSQCTP 91 (262)
Q Consensus 15 ~~~r~~l~~~~r~l~~~gl~~~~~GniSvR~~--d~~lItpsG~~~~~l~~~div~vd~d-g~~v~g~~~~~~~pS~E~~ 91 (262)
+++|++|++++|+|+++||+.+++||||+|++ +.|||||||.++++++++||++||+| |++++|. .+||+|+.
T Consensus 3 ~~~r~~l~~~~r~l~~~gl~~~~~GNiS~R~~~~~~~~ItpsG~~~~~l~~~dlv~vd~~~G~~v~g~----~~pSse~~ 78 (231)
T 1k0w_A 3 EDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGA----KKPSSDTP 78 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCCEEEEEETTTTEEEECBSSCCTTTCCGGGCEEEETTTCCEEECS----SCBCTTHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCceEEEEeCCCCEEEEeCCCCChhhCCHhHEEEEECCCCCCCCCC----CCCChhHH
Confidence 68999999999999999999999999999995 68999999999999999999999999 9999874 68999999
Q ss_pred HHHHHHhhC-CccEEEEcCchHHHHHHhccCCCcchhhhhccccchhhhhhhhhhhhhhhhhhhcccceeecchHHHHhc
Q psy13497 92 LFMCSYTLR-NAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKG 170 (262)
Q Consensus 92 lH~~Iy~~r-dv~aViHtH~~~~~a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 170 (262)
+|..||++| |++||+|+||+|+++||++. . ++|++. .+++..++ |.+++....
T Consensus 79 lH~~iy~~rpdv~aVvHtHs~~a~a~s~~~--~-~l~~~~------------------~~~~~~~~-g~vp~~~~~---- 132 (231)
T 1k0w_A 79 THRLLYQAFPSIGGIVHTHSRHATIWAQAG--Q-SIPATG------------------TTHANYFY-GTIPCTRKM---- 132 (231)
T ss_dssp HHHHHHHHCTTCCEEEECCCHHHHHHHHHT--C-CBCCCS------------------HHHHTTCS-SCBCBCCCC----
T ss_pred HHHHHHHhCCCCCEEEEeCcHHHHHHHHhC--C-CCCCcc------------------HHHHHHhC-CCceeeccc----
Confidence 999999999 99999999999999999986 3 344320 22222221 122221000
Q ss_pred cccccCcccccCCCceeeeeecCCCCcHHHHHHHHHHHhcCCCCcEEEEcCCcceEecCCHHHHHHHHHHHHHHHHHHHH
Q psy13497 171 TWNSTLGRYNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVS 250 (262)
Q Consensus 171 ~~~~~~g~~~~~~~~~~vp~~~~~~gs~ela~~v~~~l~~~~~~~avll~nHG~~~~G~sl~eA~~~~e~lE~~a~~~~~ 250 (262)
.+.++ .+|+. .+++.+|++.+.+.+.+..+.+++||+|||+++||+|+++|+.+++.+|++|++++.
T Consensus 133 ----------~~~~i-~~~y~--~~g~~~La~~~~~~~~~~l~~~avll~nHG~~~~G~~~~eA~~~~~~lE~~a~~~~~ 199 (231)
T 1k0w_A 133 ----------TDAEI-NGEYE--WETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIF 199 (231)
T ss_dssp ----------CHHHH-HSSHH--HHHHHHHHHHHHHTTCCTTTCCEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------ccccc-ccCcC--CCChHHHHHHHHHhhhccccCCEEEEcCCCCeEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 00000 02222 467788888876543332347999999999999999999999999999999999999
Q ss_pred HHhcCCCCCC
Q psy13497 251 MKQLGLNPLS 260 (262)
Q Consensus 251 a~~~G~~~~~ 260 (262)
++++|.++..
T Consensus 200 a~~~g~~~~~ 209 (231)
T 1k0w_A 200 CRQLAPQLPD 209 (231)
T ss_dssp HHHHCTTCCC
T ss_pred HHHcCCCCCC
Confidence 9999974543
No 6
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, lyase; 1.95A {Pseudomonas syringae PV}
Probab=100.00 E-value=2.8e-44 Score=321.53 Aligned_cols=194 Identities=16% Similarity=0.202 Sum_probs=165.7
Q ss_pred CcchHHhHHHHHHHHHHHcCCcccCCCceeEEeC---CeEEEccCCCCCCCCCCCCEEEEeCCCCeecCCCCCCCCCCCc
Q psy13497 13 HPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLG---DEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQC 89 (262)
Q Consensus 13 ~~~~~r~~l~~~~r~l~~~gl~~~~~GniSvR~~---d~~lItpsG~~~~~l~~~div~vd~dg~~v~g~~~~~~~pS~E 89 (262)
.++++|++|++++|.++++||+++++||||+|++ +.|||||||.+|++++++||++||+||++++|. ....+||+|
T Consensus 30 ~e~~~R~~la~~~r~l~~~G~~~~~~GNiS~R~~~~~~~flItPsG~~~~~lt~~dlv~vdldG~~v~g~-~~~~~psse 108 (273)
T 3ocr_A 30 QEWEVRVKLAAAYRLAALKRWTDHIYTHFSARVPGPDEHFLINAFGLLFDEITASNLVKVDIDGTIVDDP-TGLGINYAG 108 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBTTBCCEEEECSSSSCEEEECCTTCCGGGCCGGGCEEEETTCCEEECT-TSCCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCccCCCcEEEEEecCCCCEEEEeCCCCChhhCCccCEEEEeCCCCCccCC-CCCCCCChH
Confidence 4678999999999999999999999999999997 489999999999999999999999999999872 123589999
Q ss_pred HHHHHHHHhhC-CccEEEEcCchHHHHHHhccCCCcchhhhhccccchhhhhhhhhhhhhhhhhhhcccceeecchHHHH
Q psy13497 90 TPLFMCSYTLR-NAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMI 168 (262)
Q Consensus 90 ~~lH~~Iy~~r-dv~aViHtH~~~~~a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 168 (262)
+.+|..||++| |++||+|+||+|+++||++.. ++|++. ++..
T Consensus 109 ~~iH~~Iy~~rpdv~aVvHtHs~~a~a~s~~~~---~l~p~~----------------------------------~~~~ 151 (273)
T 3ocr_A 109 YVIHSAIHAARHDLQAVLHTHTRDGIAVSAQKD---GLLPIS----------------------------------QHSI 151 (273)
T ss_dssp THHHHHHHHHCTTCCEEEEECCHHHHHHHTSTT---CSCSCS----------------------------------HHHH
T ss_pred HHHHHHHHHhCCCCcEEEEcCChHHHHHHHccC---CCCCcc----------------------------------HHHH
Confidence 99999999999 999999999999999999863 233321 1111
Q ss_pred hccccccCcccccCCCceeeeeecC-CCC-cHHHHHHHHHHHhcCCCCcEEEEcCCcceEecCCHHHHHHHHHHHHHHHH
Q psy13497 169 KGTWNSTLGRYNRYDEELVVPIIEN-TPQ-EKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFE 246 (262)
Q Consensus 169 ~~~~~~~~g~~~~~~~~~~vp~~~~-~~g-s~ela~~v~~~l~~~~~~~avll~nHG~~~~G~sl~eA~~~~e~lE~~a~ 246 (262)
. + ++ .||+.+| .++ +.++++.++++|++ .+++||+|||+++||+|+++||.+++++|++|+
T Consensus 152 ~-~----------~g---~v~~~~y~~~~~~~el~~~i~~~l~~---~~avlL~nHG~~~~G~tl~eA~~~~~~lE~~a~ 214 (273)
T 3ocr_A 152 A-F----------SG---RVAYHGYEGIALDLSERERLVADLGD---KSVMILRNHGLLTGGVSVEHAIQQLHALEYACN 214 (273)
T ss_dssp T-T----------TT---TEEEECCCCSSCCHHHHHHHHHHHTT---CSEEEETTTEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred H-h----------CC---CEEEECCCCCCCCHHHHHHHHHHhCc---CCEEEEcCCceEEecCCHHHHHHHHHHHHHHHH
Confidence 1 0 01 3667665 355 78999999999986 799999999999999999999999999999999
Q ss_pred HHHHHHhcC-CCCCCC
Q psy13497 247 LAVSMKQLG-LNPLSP 261 (262)
Q Consensus 247 ~~~~a~~~G-~~~~~~ 261 (262)
+++.++++| .++..+
T Consensus 215 i~l~a~~~G~~~~~~l 230 (273)
T 3ocr_A 215 IQIAAQSAGNAELVFP 230 (273)
T ss_dssp HHHHHGGGCGGGCCCC
T ss_pred HHHHHHhcCCCCCCCC
Confidence 999999999 455443
No 7
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Probab=100.00 E-value=5.5e-43 Score=307.43 Aligned_cols=196 Identities=16% Similarity=0.202 Sum_probs=161.3
Q ss_pred chHHhHHHHHHHHHHHcCCcccCCCceeEEeCC----------------------eEEEccCCCCCCCCC--CCCEEEEe
Q psy13497 15 EHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGD----------------------EIYIAPSGVQKERLT--SKDLFVQD 70 (262)
Q Consensus 15 ~~~r~~l~~~~r~l~~~gl~~~~~GniSvR~~d----------------------~~lItpsG~~~~~l~--~~div~vd 70 (262)
+++|++|++++|+|+++||+.+++||||+|+++ .|||||||.++++++ ++|+++|+
T Consensus 4 ~~~~~~l~~~~r~l~~~Gl~~~~~GNiS~R~~~~~~~~~~~~~~~~~~~~~~~~l~~lItpsG~~~~~l~~p~~dl~~v~ 83 (238)
T 1pvt_A 4 RETIREIQKVAYWLAIKGLSEANAGNISVRLDERPEGYEVKSVNEYGFDYDGPEMYLLITATGSRMREVYEDDSKICLLH 83 (238)
T ss_dssp HHHHHHHHHHHHHHHHTTSSBTTBEEEEEEESSCCSSCCCCEEEEEEEEECSCCEEEEEEBTTCCHHHHTTCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCcCCCCceEEEEcCCCcccccccccccccccccCcceEEEEcCCCCCHHhccCCcccEEEEE
Confidence 578999999999999999999999999999974 899999999999999 79988887
Q ss_pred CC----CCeecCCCCCCCCCCCcHHHHHHHHh----hC-CccEEEEcCchHHHHHHhccCCCcchhhhhccccchhhhhh
Q psy13497 71 ME----GKDLQLPEDKTLKKSQCTPLFMCSYT----LR-NAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKF 141 (262)
Q Consensus 71 ~d----g~~v~g~~~~~~~pS~E~~lH~~Iy~----~r-dv~aViHtH~~~~~a~a~~~~~~~~~p~~~~~~~~~~~~~~ 141 (262)
+| |++++|. .+||+|+.+|+.||+ .| |++||+|+||+|+++||++.. ++++.+ .
T Consensus 84 ~d~~~~g~~v~g~----~~PSsE~~~H~~iy~~~~~~rpd~~aVvHtHs~~~~a~s~~~~----l~~~~~---------~ 146 (238)
T 1pvt_A 84 VLPGKHYEILHGN----GKPTSEFPTHLMIHAKFKEMNPEKKAIVHTHPLNLLTLMNLEE----FQELLP---------K 146 (238)
T ss_dssp ECSEEEEEEEECS----SCBCTTHHHHHHHHHHHHHSCTTCCEEEEECCHHHHHHTTSGG----GTTTHH---------H
T ss_pred ecCCCCcceeCCC----CCCChHHHHHHHHHHhhhccCCCceEEEecCcHHHHHHHhccc----chhhhc---------c
Confidence 77 5688763 489999999999999 47 999999999999999999862 222110 0
Q ss_pred hhhhhhhhhhhhhcccceeecchHHHHhccccccCcccccCCCceeeeeecC-CCCcHHHHHHHHHHHhcCCCCcEEEEc
Q psy13497 142 FVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIEN-TPQEKDLRDSLERALVEFPSTSAVLVR 220 (262)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~vp~~~~-~~gs~ela~~v~~~l~~~~~~~avll~ 220 (262)
+|+. ..+....+ + + .||+++| .+++.++++++++++++ .++|||+
T Consensus 147 l~~~------------------~~~~~~~~-----~-----~---~v~~~~y~~~g~~ela~~i~~~l~~---~~avll~ 192 (238)
T 1pvt_A 147 MMKI------------------HPEVLIFF-----P-----Q---GISVVEFEKPGSVELGLKTVEKSEG---KDAVLWD 192 (238)
T ss_dssp HTTS------------------SHHHHHHC-----S-----S---CCEEECCCSTTCHHHHHHHHHHTSS---CSEEEET
T ss_pred cccc------------------chHHHHHh-----C-----C---CceEecCCCCCcHHHHHHHHHHhcc---CCEEEEc
Confidence 1000 01111101 0 1 4677766 68999999999999986 7999999
Q ss_pred CCcceEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy13497 221 RHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQLGLNPLSP 261 (262)
Q Consensus 221 nHG~~~~G~sl~eA~~~~e~lE~~a~~~~~a~~~G~~~~~~ 261 (262)
|||+++||+|+++||.+++.+|++|++++.++++|.++++.
T Consensus 193 nHG~~~~G~~~~eA~~~~~~lE~~a~~~~~a~~~g~~~~~l 233 (238)
T 1pvt_A 193 KHGVVAFGKDVAEAYDRVEILEKAAEILLRVLSLGRNPTGV 233 (238)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCC-
T ss_pred CCCceEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999999999777654
No 8
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Probab=100.00 E-value=4.3e-42 Score=307.67 Aligned_cols=199 Identities=17% Similarity=0.191 Sum_probs=164.6
Q ss_pred CCcchHHhHHHHHHHHHHHcCCcccCCCceeEEeCC-----------------------------eEEEccCCCCCCCC-
Q psy13497 12 SHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGD-----------------------------EIYIAPSGVQKERL- 61 (262)
Q Consensus 12 ~~~~~~r~~l~~~~r~l~~~gl~~~~~GniSvR~~d-----------------------------~~lItpsG~~~~~l- 61 (262)
..++++|++|++++|+|+++||+.+++||||+|+++ +|||||||.+++++
T Consensus 4 ~~~~~~~~~l~~~~r~l~~~Gl~~~~~GNiS~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lItpSG~~~~~l~ 83 (274)
T 2v9l_A 4 ITYSWFVQGMIKATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQQPRYIPLSQPMPLLANTPFIVTGSGKFFRNVQ 83 (274)
T ss_dssp GGGSHHHHHHHHHHHHHHHTTCCCTTCEEEEEECCHHHHGGGGGGSCSSCEEEECSSCCGGGTTCEEEEEBTTCCGGGTT
T ss_pred hhHHHHHHHHHHHHHHHHHCCCccCCCceEEEEcCCCCcccccccccccccccccccccccccCcEEEEeCCCCCHHHhc
Confidence 345689999999999999999999999999999973 79999999999999
Q ss_pred -CCCC---EEEEeCCCC---ee---cCCCCCCCCCCCcHHHHHHHHhh-----C-CccEEEEcCchHHHHHHhccCCCcc
Q psy13497 62 -TSKD---LFVQDMEGK---DL---QLPEDKTLKKSQCTPLFMCSYTL-----R-NAGAVIHTHSKAAVLVTMLYPGNVS 125 (262)
Q Consensus 62 -~~~d---iv~vd~dg~---~v---~g~~~~~~~pS~E~~lH~~Iy~~-----r-dv~aViHtH~~~~~a~a~~~~~~~~ 125 (262)
+++| +++||.||+ ++ ++ +.+||+|+.+|+.||+. | |++||+|+||+|+++||++.+
T Consensus 84 ~~p~d~~~iv~vd~dG~~~~~v~~~~~----~~~PSsE~~~H~~iy~~r~~~~rpd~~aVvHtHs~~~~a~s~~~~---- 155 (274)
T 2v9l_A 84 LDPAANLGIVKVDSDGAGYHILWGLTN----EAVPTSELPAHFLSHCERIKATNGKDRVIMHCHATNLIALTYVLE---- 155 (274)
T ss_dssp TCHHHHEEEEEECTTSSEEEEEEECTT----TCCBCTTHHHHHHHHHHHHHHTTTCCCEEEEECCHHHHHHTTTSC----
T ss_pred CCHhhCCcEEEEeCCCCeeeeeeccCC----CCCCCHHHHHHHHHHHhcccccCCCCeEEEECCcHHHHHHHccCc----
Confidence 8998 999999999 54 34 36899999999999997 8 999999999999999999863
Q ss_pred hhhhhccccchhhhhhhhhhhhhhhhhhhcccceeecchHHHHhccccccCcccccCCCceeeeeecC-CCCcHHHHHHH
Q psy13497 126 IELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIEN-TPQEKDLRDSL 204 (262)
Q Consensus 126 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~vp~~~~-~~gs~ela~~v 204 (262)
+|. +.|+ .++|++...+ ... + + ..||+++| .||+.++++++
T Consensus 156 l~~-----------~~~~--~~~~~~~~e~----------~~~--~-----------g--~~v~v~~y~~~g~~ela~~i 197 (274)
T 2v9l_A 156 NDT-----------AVFT--RQLWEGSTEC----------LVV--F-----------P--DGVGILPWMVPGTDAIGQAT 197 (274)
T ss_dssp CCH-----------HHHH--HHHHHTSTTH----------HHH--C-----------T--TCEEECCCCCSSSHHHHHHH
T ss_pred ccc-----------cccc--chhhhcchHH----------HHH--c-----------C--CceeEecCCCCCCHHHHHHH
Confidence 221 0111 1234331111 010 0 1 04777776 78999999999
Q ss_pred HHHHhcCCCCcEEEEcCCcceEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy13497 205 ERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQLGLNPL 259 (262)
Q Consensus 205 ~~~l~~~~~~~avll~nHG~~~~G~sl~eA~~~~e~lE~~a~~~~~a~~~G~~~~ 259 (262)
++++++ .++|||+|||+++||+|+++||.+++.+|++|++++.++++|.++.
T Consensus 198 ~~~l~~---~~avll~nHG~~~~G~~~~eA~~~~e~lE~~a~i~~~a~~~g~~~~ 249 (274)
T 2v9l_A 198 AQEMQK---HSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAQVLVKVYSMGGMKQ 249 (274)
T ss_dssp HHHHTT---CSEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHcc---CCEEEEcCCCceEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999986 7999999999999999999999999999999999999999997444
No 9
>2z7b_A MLR6791 protein; class II aldolase superfamily, lyase; 1.90A {Mesorhizobium loti}
Probab=100.00 E-value=3.6e-42 Score=307.49 Aligned_cols=184 Identities=16% Similarity=0.147 Sum_probs=156.8
Q ss_pred chHHhHHHHHHHHHHHcCCcccCCCceeEEeC---CeEEEccCCCCCCCCCCCCEEEEeCCCCeecCCCCCCCCCCCcHH
Q psy13497 15 EHPRNLIPELCKQFYHLGWVTGTGGGMTIKLG---DEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTP 91 (262)
Q Consensus 15 ~~~r~~l~~~~r~l~~~gl~~~~~GniSvR~~---d~~lItpsG~~~~~l~~~div~vd~dg~~v~g~~~~~~~pS~E~~ 91 (262)
+++|++|++++|.|+++||+.+ +||||+|++ +.||||||| .+++++++||++||+||+ ++| ..+||+|+.
T Consensus 39 ~~~r~~l~~~~r~l~~~Gl~~~-~GNiSvR~~~~~~~~lItpsg-~~~~l~~~dlv~vd~dG~-~~g----~~~pSsE~~ 111 (270)
T 2z7b_A 39 RKVFEELVTATKILLNEGIMDT-FGHISARDPEDPASFFLAQKL-APSLITVDDIQRFNLDGE-TSD----NRPSYLERY 111 (270)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCS-SCEEEEECTTCTTEEEEECSS-CGGGCCGGGEEEEETTSC-CSC----CSCCCTTHH
T ss_pred HHHHHHHHHHHHHHHHCCCcCC-ceeEEEEecCCCCEEEEeCCC-ChhhCCcccEEEECCCCC-cCC----CCCCChhHH
Confidence 6789999999999999999997 899999996 479999998 689999999999999999 544 368999999
Q ss_pred HHHHHHhhC-CccEEEEcCchHHHHHHhccCCCcchhhhhccccchhhhhhhhhhhhhhhhhhhcccceeecchHHHHhc
Q psy13497 92 LFMCSYTLR-NAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKG 170 (262)
Q Consensus 92 lH~~Iy~~r-dv~aViHtH~~~~~a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 170 (262)
+|+.||++| |++||+|+||+|+++||++. . ++|++ .++..+++ +
T Consensus 112 lH~~Iy~~rpdv~aVvHtHs~~a~a~s~~~--~-~l~~~-------------------~~~~~~~g-~------------ 156 (270)
T 2z7b_A 112 IHSEIYKTRPDVQCVLHTHSPAVLPYCFVD--T-PLRPV-------------------THMGAFIG-E------------ 156 (270)
T ss_dssp HHHHHHHHCTTCCEEEEECCTTTGGGGSSS--S-CCCCC-------------------SGGGGGGC-S------------
T ss_pred HHHHHHHhCCCCeEEEeeCCHHHHHHHhcC--C-CCCCc-------------------cHHHHHhC-C------------
Confidence 999999999 99999999999999999986 3 34432 22222221 1
Q ss_pred cccccCcccccCCCceeeeeecC----------CCCcHHHHHHHHHHHhcCCCCcEEEEcCCcceEecCCHHHHHHHHHH
Q psy13497 171 TWNSTLGRYNRYDEELVVPIIEN----------TPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTEC 240 (262)
Q Consensus 171 ~~~~~~g~~~~~~~~~~vp~~~~----------~~gs~ela~~v~~~l~~~~~~~avll~nHG~~~~G~sl~eA~~~~e~ 240 (262)
.||++++ .++++++++.++++|++ .+++||+|||+++||+|+++|+++++.
T Consensus 157 ----------------~vpv~~y~~~~g~~~~~~~~s~ela~~ia~~l~~---~~avLL~nHG~~~~G~tl~eA~~~~~~ 217 (270)
T 2z7b_A 157 ----------------SVPVYEIRDKHGDETDLFGGSPDVCADIAESLGS---QTVVLMARHGVVNVGKSVREVVFRAFY 217 (270)
T ss_dssp ----------------CCCEECTHHHHCSCSCCCCCSHHHHHHHHHHHTT---SSEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred ----------------CCceecccccCCcccccccCCHHHHHHHHHHhcc---CCEEEEcCCceEEEeCCHHHHHHHHHH
Confidence 2444432 24588999999999986 789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q psy13497 241 YDYLFELAVSMKQLGLNPL 259 (262)
Q Consensus 241 lE~~a~~~~~a~~~G~~~~ 259 (262)
+|++|++++.++++|.+..
T Consensus 218 lE~~a~i~l~a~~~G~~~~ 236 (270)
T 2z7b_A 218 LEQEAAALTAGLKIGNVKY 236 (270)
T ss_dssp HHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhcCCCcC
Confidence 9999999999999996643
No 10
>3m4r_A Uncharacterized protein; short chain dehydrogenase, class II aldolase, adducin head D carbohydrate metabolism, structural genomics; 2.00A {Thermoplasma acidophilum}
Probab=100.00 E-value=3.3e-39 Score=280.80 Aligned_cols=174 Identities=16% Similarity=0.110 Sum_probs=141.3
Q ss_pred HhHHHHHHHHHH-HcCCcccCCCceeEEeC---------CeEEEccCCCCCCCCCCCCEEEEeCC---------------
Q psy13497 18 RNLIPELCKQFY-HLGWVTGTGGGMTIKLG---------DEIYIAPSGVQKERLTSKDLFVQDME--------------- 72 (262)
Q Consensus 18 r~~l~~~~r~l~-~~gl~~~~~GniSvR~~---------d~~lItpsG~~~~~l~~~div~vd~d--------------- 72 (262)
-++++.+++++. ++||+.+++||||+|++ +.|||||||.+|++++++||++||+|
T Consensus 17 L~~~v~~~~~lg~~~~l~~~t~GNiSvR~~~~~~~g~~~~~~~ItpSG~~~~~l~~~dlv~vdl~~l~~~~~~~~~~~~~ 96 (222)
T 3m4r_A 17 IDEVVYGSRLIGSDPDLVLHGGGNTSVKTTERDHAGRIISVLRVKNSGSNLGTIDSRGFTGIRMDDALAAAKIDKMTDEA 96 (222)
T ss_dssp HHHHHHHHHHHHTCTTTCC-CCCEEEEEEEEECTTSCEEEEEEEEBTTSCGGGCCGGGEEEEEHHHHHHGGGCSCCCHHH
T ss_pred HHHHHHHHHHhcccCCeeecCCCeEEEEeCCCccccCcCCEEEEeCCCCChhhCCHHHeEEEchhhhccccccccccchh
Confidence 456777777774 68999999999999996 57999999999999999999999999
Q ss_pred ------CCeecCCCCCCCCCCCcHHHHHHHHhhCCccEEEEcCchHHHHHHhccCCCcchhhhhccccchhhhhhhhhhh
Q psy13497 73 ------GKDLQLPEDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFT 146 (262)
Q Consensus 73 ------g~~v~g~~~~~~~pS~E~~lH~~Iy~~rdv~aViHtH~~~~~a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 146 (262)
|+++++. +.+||+|+.+|..||+ +||+|+||+|+++||++.. ++|++
T Consensus 97 ~~~~~~g~~v~~~---~~~pSsE~~lH~~iy~----~aVvHtHs~~a~a~s~~~~---~l~~~----------------- 149 (222)
T 3m4r_A 97 MVDYLKKSMVNPS---EPSPSVETFLHAFLPY----KFVMHSHADAILSITNTDL---PSDQI----------------- 149 (222)
T ss_dssp HHHHHHHTBSSTT---SCCBCTTHHHHHTSCS----SEEEEECCHHHHHHHTSSC---CHHHH-----------------
T ss_pred hccccCCccccCC---CCCcchhHHHHHHHHh----CEEEEeCCHHHHHHHhCCC---cHHHH-----------------
Confidence 8888763 3689999999999998 6999999999999999863 23321
Q ss_pred hhhhhhhhcccceeecchHHHHhccccccCcccccCCCceeeeeecC-CCCcHHHHHHHHHHHhcCCCCcEEEEcCCcce
Q psy13497 147 YNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIEN-TPQEKDLRDSLERALVEFPSTSAVLVRRHGVY 225 (262)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~vp~~~~-~~gs~ela~~v~~~l~~~~~~~avll~nHG~~ 225 (262)
..++ + .||+++| .+++ ++++.+++++++. .+++||+|||++
T Consensus 150 -----~~~~---------------------------g---~v~~~~y~~~g~-ela~~i~~~l~~~--~~avlL~nHG~~ 191 (222)
T 3m4r_A 150 -----AKIL---------------------------G---NVVVLPYIPPGF-TLAKEVMNCFKKG--IDGIVLRKHGLL 191 (222)
T ss_dssp -----HHHH---------------------------C---SEEEECCCCSSH-HHHHHHHHHCCTT--CSEEEETTTEEE
T ss_pred -----HHHh---------------------------C---CceecCCcCCcH-HHHHHHHHHHhcC--CCEEEECCCCCE
Confidence 0000 1 2556554 6888 9999999999862 489999999999
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13497 226 VWGGDWKSTKTQTECYDYLFELAVSMKQLGL 256 (262)
Q Consensus 226 ~~G~sl~eA~~~~e~lE~~a~~~~~a~~~G~ 256 (262)
+||+|+++||++++.+|++|++++.++++|.
T Consensus 192 ~~G~t~~eA~~~~~~lE~~a~~~l~a~~~G~ 222 (222)
T 3m4r_A 192 TFGDTGKEAYDRHINIVSRAENFIREKTDGK 222 (222)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHC------
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999883
No 11
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=61.29 E-value=14 Score=26.13 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=20.7
Q ss_pred CcceEecCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy13497 222 HGVYVWGGDWKSTKTQTECYDYLFELAVSMKQ 253 (262)
Q Consensus 222 HG~~~~G~sl~eA~~~~e~lE~~a~~~~~a~~ 253 (262)
-|+++.|+|+++|+.. +..+.+.++....
T Consensus 37 pgc~t~G~T~eEA~~~---a~eAl~~~le~~~ 65 (87)
T 2dsy_A 37 PGVWATGKSLKECEAN---LQAALEDWLLFLL 65 (87)
T ss_dssp TTCEEEESSHHHHHHH---HHHHHHHHHHHHH
T ss_pred CCeeEeeCCHHHHHHH---HHHHHHHHHHHHH
Confidence 3899999999999965 4555555555433
No 12
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=53.92 E-value=37 Score=25.93 Aligned_cols=50 Identities=12% Similarity=0.128 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEEcCCc--------ceEecCCHHHHHHHHHHHHHHHH
Q psy13497 197 EKDLRDSLERALVEFPSTSAVLVRRHG--------VYVWGGDWKSTKTQTECYDYLFE 246 (262)
Q Consensus 197 s~ela~~v~~~l~~~~~~~avll~nHG--------~~~~G~sl~eA~~~~e~lE~~a~ 246 (262)
+.++.+.+++++.+.+..+++++.=-| +++.|.|-++.-..++.+++.++
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk 60 (125)
T 2o5a_A 3 NQELLQLAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQ 60 (125)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECBTTBC--CEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 357888999999887778888887776 88999999999999999998876
No 13
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=48.75 E-value=22 Score=31.45 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCcceEecCCHHHHHHHHHHH
Q psy13497 198 KDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECY 241 (262)
Q Consensus 198 ~ela~~v~~~l~~~~~~~avll~nHG~~~~G~sl~eA~~~~e~l 241 (262)
.+++++|.+++++ ...+.+.|||+ -+++++..+..+
T Consensus 26 ~~~~~~l~~A~~~---~GFf~v~nHGi-----l~~~~~~~~~~F 61 (331)
T 1odm_A 26 MRVAQQIDAASRD---TGFFYAVNHGI-----NVQRLSQKTKEF 61 (331)
T ss_dssp HHHHHHHHHHHHT---TSEEEEESCCC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCEEEEEccce-----eHHHHHHHHHhc
Confidence 3478888899987 68899999998 677777666665
No 14
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=48.00 E-value=43 Score=25.74 Aligned_cols=50 Identities=8% Similarity=0.108 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEEcCCc--------ceEecCCHHHHHHHHHHHHHHHH
Q psy13497 197 EKDLRDSLERALVEFPSTSAVLVRRHG--------VYVWGGDWKSTKTQTECYDYLFE 246 (262)
Q Consensus 197 s~ela~~v~~~l~~~~~~~avll~nHG--------~~~~G~sl~eA~~~~e~lE~~a~ 246 (262)
+.++++.+++++.+.+..+++++.=-| +++.|.|-++.-..++.+++.++
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIaTg~S~rqv~Aiad~v~~~lk 60 (130)
T 2id1_A 3 IQEISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLK 60 (130)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEGGGTCSSCSEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 467888999999887778888887666 88999999999999999988876
No 15
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=36.11 E-value=1.2e+02 Score=23.32 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=44.0
Q ss_pred CCcHHHHHHHHHHHhcCCCCcEEEEcCCc--------ceEecCCHHHHHHHHHHHHHHHHH
Q psy13497 195 PQEKDLRDSLERALVEFPSTSAVLVRRHG--------VYVWGGDWKSTKTQTECYDYLFEL 247 (262)
Q Consensus 195 ~gs~ela~~v~~~l~~~~~~~avll~nHG--------~~~~G~sl~eA~~~~e~lE~~a~~ 247 (262)
..+.++.+.+++++.+.+..+++++.=.| +++.|.|-++.-..++.+++.++.
T Consensus 17 ~~~~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~ 77 (136)
T 3ups_A 17 FDPEMLLKLVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIKA 77 (136)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEEECTTTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 45678999999999987778888876555 578899999999999999887763
No 16
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=27.47 E-value=31 Score=29.71 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=24.1
Q ss_pred eeeeecCCCCcHHHHHHHHHHHhcCCCCcEEEEcCCcc
Q psy13497 187 VVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGV 224 (262)
Q Consensus 187 ~vp~~~~~~gs~ela~~v~~~l~~~~~~~avll~nHG~ 224 (262)
.||+++.. ..+.++++.+++++ ...+.+.|||+
T Consensus 3 ~IPvIDls--~~~~~~~l~~A~~~---~GFF~v~nHGi 35 (280)
T 3on7_A 3 KLETIDYR--AADSAKRFVESLRE---TGFGVLSNHPI 35 (280)
T ss_dssp -CCEEETT--STTHHHHHHHHHHH---HSEEEEESCSS
T ss_pred CCCEEECC--ChhHHHHHHHHHHh---CCEEEEECCCC
Confidence 37888631 23457888889987 68899999996
No 17
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Probab=25.41 E-value=19 Score=30.47 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=17.8
Q ss_pred CCceeEEeCCeEEEccCCCCCCCCCCCCEEEEe
Q psy13497 38 GGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQD 70 (262)
Q Consensus 38 ~GniSvR~~d~~lItpsG~~~~~l~~~div~vd 70 (262)
.|.+++|+.|.++||..|.-.=.-.|.+|..++
T Consensus 224 ~g~~gvriEd~vlVT~~G~e~LT~~p~el~~ie 256 (264)
T 3tb5_A 224 DGGLSCQYEHSLAITKEGPRILTSQGEELTYLE 256 (264)
T ss_dssp TCCCEEECCEEEECCTTCCEETTCCSSTTCC--
T ss_pred CCccEEEeceEEEEcCCcCEECCCCCcchhhhh
Confidence 356677777777777776543333344444443
No 18
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.80A {Thermus thermophilus}
Probab=23.16 E-value=54 Score=21.69 Aligned_cols=26 Identities=4% Similarity=0.055 Sum_probs=18.0
Q ss_pred CcceEecCCHHHHHHHHHHHHHHHHHHHHH
Q psy13497 222 HGVYVWGGDWKSTKTQTECYDYLFELAVSM 251 (262)
Q Consensus 222 HG~~~~G~sl~eA~~~~e~lE~~a~~~~~a 251 (262)
-| ++.|+|+++|...+ ..+.+.++..
T Consensus 25 pg-~t~G~T~eEa~~~~---~eAi~~~le~ 50 (67)
T 2yzt_A 25 HA-HTQAQSFEELLRRL---QEAIAVSLEE 50 (67)
T ss_dssp TE-EEEESSHHHHHHHH---HHHHHHHTTC
T ss_pred CC-ceeeCCHHHHHHHH---HHHHHHHHhc
Confidence 37 89999999999654 4444444443
No 19
>3kwr_A Putative RNA-binding protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS binding protein; HET: GOL; 1.45A {Lactobacillus plantarum}
Probab=22.80 E-value=53 Score=23.82 Aligned_cols=26 Identities=8% Similarity=0.141 Sum_probs=18.2
Q ss_pred cceEecCCHHHHHHHHHHHHHHHHHHHHH
Q psy13497 223 GVYVWGGDWKSTKTQTECYDYLFELAVSM 251 (262)
Q Consensus 223 G~~~~G~sl~eA~~~~e~lE~~a~~~~~a 251 (262)
|.++.|+|++||+..+ .++.+.++..
T Consensus 31 Gc~T~GdT~eEAl~nA---~EAL~~~Le~ 56 (97)
T 3kwr_A 31 AAQTFGASVQVAADNA---ANALAIALFE 56 (97)
T ss_dssp GGCEEESSHHHHHHHH---HHHHHHHHTT
T ss_pred CcEEecCCHHHHHHHH---HHHHHHHHHh
Confidence 7899999999998654 4444444443
No 20
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=20.00 E-value=41 Score=29.26 Aligned_cols=35 Identities=3% Similarity=0.037 Sum_probs=25.9
Q ss_pred eeeeecCC---CCcHHHHHHHHHHHhcCCCCcEEEEcCCcc
Q psy13497 187 VVPIIENT---PQEKDLRDSLERALVEFPSTSAVLVRRHGV 224 (262)
Q Consensus 187 ~vp~~~~~---~gs~ela~~v~~~l~~~~~~~avll~nHG~ 224 (262)
.||+++.. .+..+++++|.+++++ ...+.+.|||+
T Consensus 6 ~iPvIDls~~~~~~~~~~~~l~~A~~~---~GFf~v~nHGi 43 (312)
T 3oox_A 6 AIDPVSFSLYAKDFTRFAQELGASFER---YGFAVLSDYDL 43 (312)
T ss_dssp SSCCEETHHHHHCHHHHHHHHHHHHHH---HSEEEEESCCS
T ss_pred CCCeEEChHhcccHHHHHHHHHHHHHh---CcEEEEECCCC
Confidence 36666521 1345678889999987 68999999997
Done!