RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13497
(262 letters)
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic
mechanism; 2.40A {Aquifex aeolicus}
Length = 208
Score = 204 bits (522), Expect = 1e-66
Identities = 54/257 (21%), Positives = 92/257 (35%), Gaps = 52/257 (20%)
Query: 1 MSSNEIAKVEESHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDE-IYIAPSGVQKE 59
M+ K E I E + + GWV T G ++ K+ +E I I SG K
Sbjct: 1 MNVELFKKFSE-----KVEEIIEAGRILHSRGWVPATSGNISAKVSEEYIAITASGKHKG 55
Query: 60 RLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTM 118
+LT +D+ + D EG+ + K S T L Y L AV+HTHS A ++++
Sbjct: 56 KLTPEDILLIDYEGRPV-----GGGKPSAETLLHTTVYKLFPEVNAVVHTHSPNATVISI 110
Query: 119 LYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGR 178
+ + + E++K
Sbjct: 111 VEKK-----------------------------------DFVELEDYELLKA-----FPD 130
Query: 179 YNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQT 238
+ ++ ++ +PI N L +E L+R HG+Y WG + T
Sbjct: 131 IHTHEVKIKIPIFPNEQNIPLLAKEVENYFKTSEDKYGFLIRGHGLYTWGRSMEEALIHT 190
Query: 239 ECYDYLFELAVSMKQLG 255
E +++FE + +
Sbjct: 191 EALEFIFECELKLLSFH 207
>1k0w_A L-ribulose 5 phosphate 4-epimerase; aldolase, isomerase; 2.10A
{Escherichia coli} SCOP: c.74.1.1 PDB: 1jdi_A
Length = 231
Score = 85.1 bits (211), Expect = 4e-20
Identities = 45/251 (17%), Positives = 78/251 (31%), Gaps = 45/251 (17%)
Query: 15 EHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDE--IYIAPSGVQKERLTSKDLFVQDME 72
E + + E VT T G ++ + I PSGV +T+ D+ V +E
Sbjct: 3 EDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIE 62
Query: 73 GKDLQLPEDKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTMLYPGNVSIELVSS 131
++ + K S TP Y + G ++HTHS+ A + SI
Sbjct: 63 TGEV---VEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQA---GQSIPATG- 115
Query: 132 YLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPII 191
Y + + M N Y+ E I+
Sbjct: 116 -----------------TTHANYFYGTIPCTRK--MTDAEIN------GEYEWETGNVIV 150
Query: 192 ENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSM 251
E + E+ ++ VLV HG + WG + + + + + +
Sbjct: 151 E----------TFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFC 200
Query: 252 KQLGLNPLSPP 262
+QL
Sbjct: 201 RQLAPQLPDMQ 211
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding,
riken structural genomics/proteomics initiative, RSGI,
NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Length = 200
Score = 80.4 bits (199), Expect = 1e-18
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 15 EHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGK 74
++ + + G ++ T G +++ I SGVQK RLT +DL +EG
Sbjct: 3 ARLYAAFRQVGEDLFAQGLISATAGNFSVRTKGGFLITKSGVQKARLTPEDLLEVPLEGP 62
Query: 75 DLQLPEDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTML 119
+ S + + Y A A++H H + AV ++
Sbjct: 63 IPEGA-------SVESVVHREVYRRTGARALVHAHPRVAVALSFH 100
Score = 43.4 bits (103), Expect = 2e-05
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 188 VPIIEN--TPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLF 245
VP++ ++ S+ AL E A L+R HG + G + E Y +
Sbjct: 118 VPVLAPKTVSATEEAALSVAEALREHR---ACLLRGHGAFAVGLKEAPEEALLEAYGLMT 174
Query: 246 EL 247
L
Sbjct: 175 TL 176
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas
structural genomics, PSI-2, protein structure
initiative; 2.50A {Bacteroides thetaiotaomicron}
Length = 212
Score = 72.7 bits (179), Expect = 1e-15
Identities = 14/106 (13%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Query: 15 EHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGK 74
+ L ++ + + G ++ ++G+E I+ +G L + + + ++
Sbjct: 4 DEHIELFLAQAHRYGDAKLMLCSSGNLSWRIGEEALISGTGSWVPTLAKEKVSICNIASG 63
Query: 75 DLQLPEDKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
+K S + + R + V+H S+ A ++ +
Sbjct: 64 TP----TNGVKPSMESTFHLGVLRERPDVNVVLHFQSEYATAISCM 105
Score = 34.5 bits (80), Expect = 0.018
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 188 VPIIEN-TPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGD 230
+P+I P +L ++ A+++ +VL+ HG V G D
Sbjct: 126 IPVIPYYRPGSPELAKAVVEAMLKHN---SVLLTNHGQVVCGKD 166
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial
L-fucose metabolism; 1.66A {Escherichia coli} SCOP:
c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P
1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P
1dzw_P 1e49_P 1e4a_P
Length = 215
Score = 69.6 bits (171), Expect = 1e-14
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 15 EHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGK 74
I + C + LG GT G ++++ D + I P+G+ E+LT + D GK
Sbjct: 4 NKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGK 63
Query: 75 DLQLPEDKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTML 119
E K M +Y R +A AV+H H+ V++L
Sbjct: 64 HE---EGK--LPQSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSIL 104
Score = 28.4 bits (64), Expect = 1.8
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 194 TPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGD 230
T ++L + + AL A L++ HG+ +
Sbjct: 130 TFGTRELSEHVALALKNRK---ATLLQHHGLIACEVN 163
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein
initiative, midwest center for structural genomics,
MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Length = 238
Score = 62.5 bits (152), Expect = 6e-12
Identities = 35/275 (12%), Positives = 73/275 (26%), Gaps = 77/275 (28%)
Query: 18 RNLIPELCKQFYHLGWVTGTGGGMTIKLGDE----------------------IYIAPSG 55
I ++ G G ++++L + + I +G
Sbjct: 7 IREIQKVAYWLAIKGLSEANAGNISVRLDERPEGYEVKSVNEYGFDYDGPEMYLLITATG 66
Query: 56 VQKERLTSKDLFVQDMEGKDLQLPE--DKTLKKSQCTPLFMCSYTLR-----NAGAVIHT 108
+ + D + + + E K + P + + A++HT
Sbjct: 67 SRMREVYEDDSKICLLHVLPGKHYEILHGNGKPTSEFPTHLMIHAKFKEMNPEKKAIVHT 126
Query: 109 HSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMI 168
H + + L + + +I + +I
Sbjct: 127 HPLNLLTLMNLEEFQELLP------------------------------KMMKIHPEVLI 156
Query: 169 KGTWNSTLGRYNRYDEELVVPIIE-NTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVW 227
+ + ++E P +L AVL +HGV +
Sbjct: 157 FF------PQG--------ISVVEFEKPGSVELGLKTVEKSEGK---DAVLWDKHGVVAF 199
Query: 228 GGDWKSTKTQTECYDYLFELAVSMKQLGLNPLSPP 262
G D + E + E+ + + LG NP P
Sbjct: 200 GKDVAEAYDRVEILEKAAEILLRVLSLGRNPTGVP 234
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 2e-07
Identities = 45/270 (16%), Positives = 83/270 (30%), Gaps = 87/270 (32%)
Query: 3 SNEIAKVEESHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLT 62
+ A +E P P EL +F LG+V+ + + G Q +++
Sbjct: 45 TEGFAADDE--PTTP----AELVGKF--LGYVS-----------SLVEPSKVG-QFDQVL 84
Query: 63 SKDL--FVQD-MEGKDL-----QLPEDKTLKKSQCTPLFMCSYTLRN-AGAVIHTHSKAA 113
+ L F +EG D+ +L ++ + L T R A S +A
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 114 VLVTMLYPGNVSIELVSSYLGNIFQLKFFVQF----TYNWYLVAYCWSNVFRIAYQEMIK 169
+ V GN + F + Y +E+
Sbjct: 145 LF-----------RAVGE--GNA---QLVAIFGGQGNTDDYF-------------EELRD 175
Query: 170 GTWNSTLGRYNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGG 229
Y Y LV +I+ + ++L L+ + + + G
Sbjct: 176 --------LYQTY-HVLVGDLIKFS------AETLSE-LIRTTLDAEKV------FTQGL 213
Query: 230 D---WKSTKTQTECYDYLFELAVSMKQLGL 256
+ W + T DYL + +S +G+
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Score = 33.1 bits (75), Expect = 0.11
Identities = 50/251 (19%), Positives = 87/251 (34%), Gaps = 76/251 (30%)
Query: 36 GTGGGMTIKLGDEIYIAPS--GVQKERLTSKDLFVQDMEGKDLQL----PEDKTLKKSQC 89
G G I+ E Y A + +L ++ +F +++ + L +Q
Sbjct: 1677 GGEKGKRIR---ENYSAMIFETIVDGKLKTEKIF-KEINEHSTSYTFRSEKGL-LSATQF 1731
Query: 90 T-P-LFMCSY----TLRNAGAVIHT-----HSKAAVLVTMLYPGNVSIE---LVSSYLGN 135
T P L + L++ G + HS L G E L S L +
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHS--------L--G----EYAALAS--LAD 1775
Query: 136 IFQLKFFVQFTYNWYLVAYCWSNVFR-IAYQEMIKGTWNSTLGRYNRYDEELVVP--IIE 192
+ ++ V+ +V Y R + Q + LGR N Y + P +
Sbjct: 1776 VMSIESLVE------VVFY------RGMTMQVAVPR---DELGRSN-YGMIAINPGRVAA 1819
Query: 193 NTPQEKDLRDSLERALVEFPSTSAVL--V---RRHGVYVWGGDWKSTKTQTECYDY---- 243
+ QE L+ +ER T ++ V + YV GD ++ T T ++
Sbjct: 1820 SFSQE-ALQYVVERVGKR---TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 244 ---LFELAVSM 251
+ EL S+
Sbjct: 1876 KIDIIELQKSL 1886
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding,
oligomerization, zinc, lyase, class II, cytoplasm; HET:
PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A
2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A
2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Length = 274
Score = 48.8 bits (116), Expect = 4e-07
Identities = 32/279 (11%), Positives = 70/279 (25%), Gaps = 88/279 (31%)
Query: 23 ELCKQFYHLGWVTGTGGGMTIKLGDE-----------------------------IYIAP 53
+ + GW GG +T++L D +
Sbjct: 15 KATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQQPRYIPLSQPMPLLANTPFIVTG 74
Query: 54 SGVQKERLT-----SKDLFVQDMEGKDLQLPE--DKTLKKSQCTPLFMCSYTLR------ 100
SG + + + D +G + + P S+ R
Sbjct: 75 SGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNEAVPTSELPAHFLSHCERIKATNG 134
Query: 101 NAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVF 160
++H H+ + +T + + ++ FT + +
Sbjct: 135 KDRVIMHCHATNLIALTYVLENDTAV------------------FTRQLWEGST------ 170
Query: 161 RIAYQEMIKGTWNSTLGRYNRYDEELVVPIIE-NTPQEKDLRDSLERALVEFPSTSAVLV 219
+ V I+ P + + + + + S VL
Sbjct: 171 --ECLVVFPDG----------------VGILPWMVPGTDAIGQATAQEMQKH---SLVLW 209
Query: 220 RRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQLGLNP 258
HGV+ G T + + ++ V + +G
Sbjct: 210 PFHGVFGSGPTLDETFGLIDTAEKSAQVLVKVYSMGGMK 248
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 1e-05
Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 44/203 (21%)
Query: 56 VQKERLTSKDL-------FVQDMEGKDLQLPEDKTLKKSQCTPLFMCSYTLRNAGAVIHT 108
+ + KD+ FV + + KD+Q L K + + M
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK----------DA 60
Query: 109 HSKAAVLVTML--YPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQE 166
S L L + + V L + Y + + R
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVL----------RINYKFLMSP--IKTEQRQ--PS 106
Query: 167 MIKGTWNSTLGR-YNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVY 225
M+ + R YN D ++ N + + L +AL+E VL+ GV
Sbjct: 107 MMTRMYIEQRDRLYN--DNQVFAKY--NVSRLQPY-LKLRQALLELRPAKNVLI--DGV- 158
Query: 226 VWGGDWKSTKTQTECYDYLFELA 248
G K+ C Y +
Sbjct: 159 --LGSGKTWVALDVCLSYKVQCK 179
Score = 30.2 bits (67), Expect = 0.88
Identities = 34/228 (14%), Positives = 74/228 (32%), Gaps = 44/228 (19%)
Query: 12 SHPEHPRNLI-------PELCKQFYH----LGWVTGTGGGMTIKLGDEIYIAPSGVQKER 60
+ L+ + F L +T +T L S
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 61 -LT---SKDLFVQDMEGKDLQLPEDKTLKKSQCTPLF--MCSYTLRNAGAVIHT--HSKA 112
LT K L ++ ++ + LP + P + + ++R+ A H
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVL----TTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 113 AVLVTMLYPGNVSIE-LVSSYLGNIFQLKFFVQFTYNWY-----LVAYCWSNVFRIAYQE 166
L T++ S+ L + +F + V F + + L W +V +
Sbjct: 353 DKLTTII---ESSLNVLEPAEYRKMFD-RLSV-FPPSAHIPTILLSLI-WFDVIKSDVMV 406
Query: 167 MIKGTWNSTLGRYNRYDEELVVPI----IENTPQEKDLRDSLERALVE 210
++ +L + +E + I +E + ++ +L R++V+
Sbjct: 407 VVNKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEY-ALHRSIVD 451
>2z7b_A MLR6791 protein; class II aldolase superfamily, lyase; 1.90A
{Mesorhizobium loti}
Length = 270
Score = 35.5 bits (82), Expect = 0.012
Identities = 15/124 (12%), Positives = 39/124 (31%), Gaps = 13/124 (10%)
Query: 1 MSSNEIAKVEESHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDE--IYIAPSGVQK 58
+ N + + + K + G T G ++ + ++ + +
Sbjct: 25 LEENLYFQGSFTMRRKVFEELVTATKILLNEGI-MDTFGHISARDPEDPASFFLAQKLAP 83
Query: 59 ERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTPLFMCSYTLRN---AGAVIHTHSKAAVL 115
+T D+ +++G+ ++ S + V+HTHS A +
Sbjct: 84 SLITVDDIQRFNLDGETSDNRPSYL-------ERYIHSEIYKTRPDVQCVLHTHSPAVLP 136
Query: 116 VTML 119
+
Sbjct: 137 YCFV 140
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for
structural genomics, protein struc initiative, MCSG,
lyase; 1.95A {Pseudomonas syringae PV}
Length = 273
Score = 33.5 bits (77), Expect = 0.044
Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 19/103 (18%)
Query: 28 FYHLGWVTGTGGGMTIKL---GDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTL 84
W + ++ + I G+ + +T+ +L D++G + P +
Sbjct: 45 AALKRWTDHIYTHFSARVPGPDEHFLINAFGLLFDEITASNLVKVDIDGTIVDDPTGLGI 104
Query: 85 KKSQCTPLFMCSYTL--------RNAGAVIHTHSKAAVLVTML 119
+ Y + + AV+HTH++ + V+
Sbjct: 105 NYA--------GYVIHSAIHAARHDLQAVLHTHTRDGIAVSAQ 139
>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal
helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1
PDB: 1ifv_A
Length = 155
Score = 30.0 bits (67), Expect = 0.45
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 19 NLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKD 65
++P++ + + V G GG TIK I+ + +L + D
Sbjct: 28 EIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAID 74
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural
genomics, PSI-2 structure initiative; 1.60A {Pseudomonas
syringae PV} SCOP: d.369.1.1
Length = 135
Score = 27.8 bits (61), Expect = 2.1
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 188 VPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFEL 247
VP+ P E L + E+ + P + V+G T T + + YL E+
Sbjct: 15 VPVPLELPDEDQLVEIEEQLFINIPFVFKEFLLTVSDVVYGSLEPVTVTDPQSHTYLPEV 74
Query: 248 AVSMKQLGL 256
+ LG+
Sbjct: 75 CATAWDLGV 83
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, transferase; 2.40A {Neisseria meningitidis}
Length = 794
Score = 28.3 bits (63), Expect = 2.8
Identities = 13/56 (23%), Positives = 20/56 (35%)
Query: 178 RYNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKS 233
+++ D+EL I D + E +T A V V D+KS
Sbjct: 530 EFDKQDDELKAEITRRIAGYASPVDFYVDKIAEGVATLAASVYPRKTIVRMSDFKS 585
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 28.4 bits (63), Expect = 3.2
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 18/108 (16%)
Query: 104 AVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIA 163
++ T++ + +YP ++ S G F ++ F A ++ F +
Sbjct: 187 VIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQF----------ATRYAKKFGVD 236
Query: 164 YQEMIKGTWNSTLGRYNRYDEELVVPIIENTPQEKDLRDSLERALVEF 211
+M+ W + +N ++ N + + + LERA F
Sbjct: 237 KAKMMDRLWGDSF--FNPKTKK-----WTNKDTDAEGKP-LERAFNMF 276
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv
T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A
{Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Length = 451
Score = 27.6 bits (61), Expect = 4.6
Identities = 3/13 (23%), Positives = 4/13 (30%)
Query: 200 LRDSLERALVEFP 212
L+R P
Sbjct: 42 FEQGLKRFSEAVP 54
>2vjg_A Major allergen DAU C 1; major carrot allergen,
pathogenesis-related protein, plant defense; HET: P4C
PG4 PGE; 2.70A {Daucus carota} PDB: 2wql_A* 2bk0_A
Length = 154
Score = 26.9 bits (59), Expect = 4.9
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 19 NLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKD 65
+IP+ Y V G GG T+++ +P R + +
Sbjct: 29 TVIPKAATGAYKSVEVKGDGGAGTVRIITLPEGSPITTMTVRTDAVN 75
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis,
dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A
{Thalictrum flavum} PDB: 2vne_A*
Length = 201
Score = 26.9 bits (59), Expect = 5.2
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 19 NLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKD 65
+P+L + + G GG TI + KE+ D
Sbjct: 55 KHLPDLLPGAFEKLEIIGDGGVGTILDMTFVPGEFPHEYKEKFILVD 101
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 27.2 bits (61), Expect = 6.2
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 34 VTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQ 77
V G K D+ I P + + S +Q D+
Sbjct: 210 VLGVVKQGISKDKDKTKIFPLD-RDIEIRS----IQ-SHDVDID 247
>3m4r_A Uncharacterized protein; short chain dehydrogenase, class II
aldolase, adducin head D carbohydrate metabolism,
structural genomics; 2.00A {Thermoplasma acidophilum}
Length = 222
Score = 27.0 bits (58), Expect = 6.3
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 200 LRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFEL 247
+ E +++R+HG+ +G K E YD +
Sbjct: 166 FTLAKEVMNCFKKGIDGIVLRKHGLLTFGDTGK------EAYDRHINI 207
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 26.7 bits (58), Expect = 8.9
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 5/121 (4%)
Query: 111 KAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQ---EM 167
+A +V + + + LG K+ + V +NVF A++ +
Sbjct: 167 EARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTL 226
Query: 168 IKGTWNSTLGRYNRYDEELVVPIIE--NTPQEKDLRDSLERALVEFPSTSAVLVRRHGVY 225
I+ RY + VP+ L ++ L +T A L R++ +
Sbjct: 227 IQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIA 286
Query: 226 V 226
V
Sbjct: 287 V 287
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.417
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,114,638
Number of extensions: 239113
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 38
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)