RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13497
(262 letters)
>d1k0wa_ c.74.1.1 (A:) L-ribulose-5-phosphate 4-epimerase
{Escherichia coli [TaxId: 562]}
Length = 223
Score = 85.7 bits (211), Expect = 8e-21
Identities = 34/250 (13%), Positives = 68/250 (27%), Gaps = 43/250 (17%)
Query: 15 EHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDE--IYIAPSGVQKERLTSKDLFVQDME 72
E + + E VT T G ++ + I PSGV +T+ D+ V +E
Sbjct: 3 EDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIE 62
Query: 73 GKDLQLPEDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSY 132
++ E S + + G ++HTHS+ A +
Sbjct: 63 TG--EVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQS---------- 110
Query: 133 LGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIE 192
+ I + +
Sbjct: 111 --------------IPATGTTHANYFYGTIPCTRKMTD---------------AEINGEY 141
Query: 193 NTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMK 252
+ ++ E+ ++ VLV HG + WG + + + + + + +
Sbjct: 142 EWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCR 201
Query: 253 QLGLNPLSPP 262
QL
Sbjct: 202 QLAPQLPDMQ 211
>d1pvta_ c.74.1.1 (A:) Putative sugar-phosphate aldolase {Thermotoga
maritima [TaxId: 2336]}
Length = 232
Score = 84.9 bits (209), Expect = 2e-20
Identities = 35/275 (12%), Positives = 72/275 (26%), Gaps = 78/275 (28%)
Query: 16 HPRNLIPELCK---QFYHLGWVTGTGGGMTIKLGDE----------------------IY 50
H R I E+ K G G ++++L + +
Sbjct: 2 HMRETIREIQKVAYWLAIKGLSEANAGNISVRLDERPEGYEVKSVNEYGFDYDGPEMYLL 61
Query: 51 IAPSGVQKERLTSKDLFVQDMEGKDLQLPE--DKTLKKSQCTPLFMCSYTLR-----NAG 103
I +G + + D + + + E K + P + +
Sbjct: 62 ITATGSRMREVYEDDSKICLLHVLPGKHYEILHGNGKPTSEFPTHLMIHAKFKEMNPEKK 121
Query: 104 AVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIA 163
A++HTH + + L + + + + + + +
Sbjct: 122 AIVHTHPLNLLTLMNLEEFQELLPKMMKIHPEV---------------LIFFPQGISVVE 166
Query: 164 YQEMIKGTWNSTLGRYNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHG 223
++ P +L AVL +HG
Sbjct: 167 FE----------------------------KPGSVELGLKTVEK---SEGKDAVLWDKHG 195
Query: 224 VYVWGGDWKSTKTQTECYDYLFELAVSMKQLGLNP 258
V +G D + E + E+ + + LG NP
Sbjct: 196 VVAFGKDVAEAYDRVEILEKAAEILLRVLSLGRNP 230
>d1e4cp_ c.74.1.1 (P:) L-fuculose-1-phosphate aldolase {Escherichia
coli [TaxId: 562]}
Length = 206
Score = 64.1 bits (155), Expect = 5e-13
Identities = 37/247 (14%), Positives = 73/247 (29%), Gaps = 60/247 (24%)
Query: 18 RNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQ 77
I + C + LG GT G ++++ D + I P+G+ E+LT + D
Sbjct: 7 ARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDG-----N 61
Query: 78 LPEDKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNI 136
++ M +Y R +A AV+H H+ V++L
Sbjct: 62 GKHEEGKLPQSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRS-------------- 107
Query: 137 FQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIENTPQ 196
Y + T
Sbjct: 108 -----IPAIHYMIAAAGGNS------------------------------IPCAPYATFG 132
Query: 197 EKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQLG- 255
++L + + AL + L++ HG+ + + + L +L ++ +
Sbjct: 133 TRELSEHVALALKNRKA---TLLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAITD 189
Query: 256 -LNPLSP 261
+ LS
Sbjct: 190 PVPVLSD 196
>d1ojra_ c.74.1.1 (A:) L-rhamnulose-1-phosphate aldolase
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 57.5 bits (138), Expect = 2e-10
Identities = 29/278 (10%), Positives = 65/278 (23%), Gaps = 86/278 (30%)
Query: 23 ELCKQFYHLGWVTGTGGGMTIKL-----------------------------GDEIYIAP 53
+ + GW GG +T++L +
Sbjct: 15 KATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQQPRYIPLSQPMPLLANTPFIVTG 74
Query: 54 SGVQKERLTSKD-----LFVQDMEGKDLQLPE--DKTLKKSQCTPLFMCSYTLR------ 100
SG + + D +G + + P S+ R
Sbjct: 75 SGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNEAVPTSELPAHFLSHCERIKATNG 134
Query: 101 NAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVF 160
++H H+ + +T + + ++ + + + + V
Sbjct: 135 KDRVIMHCHATNLIALTYVLENDTAV-----------FTRQLWEGSTEC--LVVFPDGVG 181
Query: 161 RIAYQEMIKGTWNSTLGRYNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVR 220
+ + P + + E S VL
Sbjct: 182 ILPWM----------------------------VPGTDAIG---QATAQEMQKHSLVLWP 210
Query: 221 RHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQLGLNP 258
HGV+ G T + + ++ V + +G
Sbjct: 211 FHGVFGSGPTLDETFGLIDTAEKSAQVLVKVYSMGGMK 248
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain
2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 94
Score = 27.5 bits (61), Expect = 0.60
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 34 VTGTGGGMTIKLGDEIYIAPSGVQKE 59
G IK G + AP+GV E
Sbjct: 21 PVGRVETGVIKPGMVVTFAPAGVTTE 46
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase
subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas
syringae pv. tomato [TaxId: 323]}
Length = 92
Score = 26.8 bits (59), Expect = 0.91
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 34 VTGTGGGMTIKLGDEIYIAPSG 55
GT + GDEI + PSG
Sbjct: 24 FAGTLASGIVHKGDEIVVLPSG 45
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus
subtilis [TaxId: 1423]}
Length = 127
Score = 26.9 bits (59), Expect = 1.3
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 1 MSSNEIAKVEESHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDE 48
SS IA ++P R +I L K +T G L +
Sbjct: 19 TSSEIIADSVNTNPVVVRRMISLLKKA----DILTSRAGVPGASLKKD 62
>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter
jejuni [TaxId: 197]}
Length = 188
Score = 26.3 bits (57), Expect = 2.9
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 9 VEESHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPS 54
+ + + + ++G GGGM KL D + PS
Sbjct: 118 STSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPS 163
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain
2 {Escherichia coli [TaxId: 562]}
Length = 92
Score = 25.1 bits (55), Expect = 4.1
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 34 VTGTGGGMTIKLGDEIYIAPSGVQKE 59
VTG IK+G+E+ I ++
Sbjct: 23 VTGRVERGIIKVGEEVEIVGIKETQK 48
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 570
Score = 26.2 bits (57), Expect = 4.6
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 5/121 (4%)
Query: 111 KAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQ---EM 167
+A +V + + + LG K+ + V +NVF A++ +
Sbjct: 271 EARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTL 330
Query: 168 IKGTWNSTLGRYNRYDEELVVPIIE--NTPQEKDLRDSLERALVEFPSTSAVLVRRHGVY 225
I+ RY + VP+ L ++ L +T A L R++ +
Sbjct: 331 IQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIA 390
Query: 226 V 226
V
Sbjct: 391 V 391
>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10
{Yellow lupine (Lupinus luteus) [TaxId: 3873]}
Length = 155
Score = 25.6 bits (56), Expect = 4.7
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 19 NLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKD 65
++P++ + + V G GG TIK I+ + +L + D
Sbjct: 28 EIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAID 74
>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 117
Score = 25.0 bits (55), Expect = 6.2
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 157 SNVFRIAYQEMIKGTWNSTLGRYNRY 182
S +R A+Q ++ R N+
Sbjct: 28 SKQYRNAFQTLLNAATYEYRDRRNKK 53
>d1gwya_ b.97.1.1 (A:) Sticholysin II {Carribean sea anemone
(Stoichactis helianthus) [TaxId: 6123]}
Length = 175
Score = 25.2 bits (55), Expect = 7.4
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 94 MCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVA 153
+ + N A++++ K V + + GN + F V F YNWY
Sbjct: 58 ILPEFVPNTKALLYSGRKDTGPVATGAVAAFAYYM---SSGNTLGVMFSVPFDYNWYSN- 113
Query: 154 YCWSNV 159
W +V
Sbjct: 114 --WWDV 117
>d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus
thermophilus [TaxId: 274]}
Length = 117
Score = 24.6 bits (54), Expect = 7.9
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 157 SNVFRIAYQEMIKGTWNSTLGRYNR 181
S FR A + + + R R
Sbjct: 28 SKSFRKARETLFAAGNYAYAHRKRR 52
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 25.6 bits (55), Expect = 8.1
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 195 PQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQL 254
+E +L D LERA F V + G+ T T E Y L ++ L
Sbjct: 8 DEELNLWDFLERAAALFGRKEVV------SRLHTGEVHRT-TYAEVYQRARRLMGGLRAL 60
Query: 255 GLNP 258
G+
Sbjct: 61 GVGV 64
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain
{Fungi (Fusarium sp.) [TaxId: 29916]}
Length = 387
Score = 25.5 bits (54), Expect = 8.1
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 214 TSAVLVRRHGVYVWGGDWKSTKTQT----ECYD--YLF 245
+ ++L+ V+ GG T + + YL+
Sbjct: 347 SISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLY 384
Score = 25.2 bits (53), Expect = 8.9
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 7/38 (18%)
Query: 212 PSTSAVLVRRHGVYVWGG-------DWKSTKTQTECYD 242
P+ +A+ V +W T T +D
Sbjct: 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWD 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.417
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,021,855
Number of extensions: 47046
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 24
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)