BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy135
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D8C|A Chain A, Solution Structure Of The Sam-Domain Of Mouse
Phosphatidyl Ceramidecholinephosphotransferase 1
Length = 97
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
V+ W+ ++VA+WL + +Y L G+ L L +ED K PP+ + +R+
Sbjct: 17 VVYWSPKKVADWLLENAMPEYCEPL---EHFTGQDLINLTQEDFKKPPLYRVSSDNGQRL 73
Query: 68 IYDIESFKKEIH 79
+ IE+ K E H
Sbjct: 74 LDMIETLKMEHH 85
>pdb|1V85|A Chain A, Sterile Alpha Motif (Sam) Domain Of Mouse Bifunctional
Apoptosis Regulator
Length = 91
Score = 36.6 bits (83), Expect = 0.024, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQ---HRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
WT+E+V WL Q G +A L D+ R++GR L L EE+ P +IE + I
Sbjct: 20 WTTEEVVLWLEQL--GPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVI 77
Query: 68 IYDIESFK 75
+ ++E +
Sbjct: 78 LTELERVR 85
>pdb|2R02|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Ypltsl Late Domain
pdb|2R03|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE YPDL
Late Domain
pdb|2R05|A Chain A, Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE HIV-1
Yplasl Late Domain
Length = 697
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 156 IVHDRVPDMKKYPPLPDIFL-DNIPL-VPWAFKLSEICGTLL-MFIWISVCIFHKHRTIL 212
I HDRVPD+K P+ L + P+ VP + K +++ ++ + + S+ +++ + L
Sbjct: 317 IYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADL 376
Query: 213 LRRFFALLGTAYLLRSVTVVITSLSVPG 240
+ R A + A L V+ SL++P
Sbjct: 377 VNRSIAQMREATTL--ANGVLASLNLPA 402
>pdb|2OEV|A Chain A, Crystal Structure Of AlixAIP1
Length = 705
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 156 IVHDRVPDMKKYPPLPDIFL-DNIPL-VPWAFKLSEICGTLL-MFIWISVCIFHKHRTIL 212
I HDRVPD+K P+ L + P+ VP + K +++ ++ + + S+ +++ + L
Sbjct: 325 IYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADL 384
Query: 213 LRRFFALLGTAYLLRSVTVVITSLSVPG 240
+ R A + A L V+ SL++P
Sbjct: 385 VNRSIAQMREATTL--ANGVLASLNLPA 410
>pdb|2XS1|A Chain A, Crystal Structure Of Alix In Complex With The Sivmac239
Pykevtedl Late Domain
pdb|2XS8|A Chain A, Crystal Structure Of Alix In Complex With The Sivagmtan-1
Aydparkll Late Domain
Length = 704
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 156 IVHDRVPDMKKYPPLPDIFL-DNIPL-VPWAFKLSEICGTLL-MFIWISVCIFHKHRTIL 212
I HDRVPD+K P+ L + P+ VP + K +++ ++ + + S+ +++ + L
Sbjct: 324 IYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADL 383
Query: 213 LRRFFALLGTAYLLRSVTVVITSLSVPG 240
+ R A + A L V+ SL++P
Sbjct: 384 VNRSIAQMREATTL--ANGVLASLNLPA 409
>pdb|3BQ7|A Chain A, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|B Chain B, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|C Chain C, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|D Chain D, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|E Chain E, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|F Chain F, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
Length = 81
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYD 70
W +E+VA WL +Y + R D RG LLH E + + +G +KRI+
Sbjct: 10 WGTEEVAAWLEHLSLCEYKDIFT---RHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCG 66
Query: 71 IESF 74
I+
Sbjct: 67 IKEL 70
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 29 APLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYDIESFKKEIHNDIRDRGYD 88
A LCD + R +F+ + D S EIL +K+I Y + +IH +RD +
Sbjct: 48 AKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGY--QKIPPDIHQVLRDIDSN 105
Query: 89 PRSLVKITRSHSAMVESTSSYVSREVVVIPRGNFKVQDN 127
+ T +A ++ +Y+ +EV +IP F + N
Sbjct: 106 ASGQIHYTDFLAATIDK-QTYLKKEVCLIPFKFFDIDGN 143
>pdb|3TAD|C Chain C, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
pdb|3TAD|D Chain D, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
Length = 265
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHR-LDGRGLFLLHEEDLK 52
WT EQV +WL ++G G Y L +H + G+ L ++DL+
Sbjct: 18 WTKEQVCSWLAEQGLGSY--LSSGKHWIISGQTLLQASQQDLE 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.142 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,164,457
Number of Sequences: 62578
Number of extensions: 476552
Number of successful extensions: 1089
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 10
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)