RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy135
(418 letters)
>gnl|CDD|188914 cd09515, SAM_SGMS1-like, SAM domain of sphingomyelin synthase
related subfamily. SAM (sterile alpha motif) domain of
SGMS-like (sphingomyelin synthase) subfamily is a
potential protein-protein interaction domain. This
group of proteins is related to sphingomyelin synthase
1, and contains an N-terminal SAM domain. The function
of SGMS1-like proteins is unknown; they may play a role
in sphingolipid metabolism.
Length = 70
Score = 96.2 bits (240), Expect = 8e-25
Identities = 35/70 (50%), Positives = 50/70 (71%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
V +WT E VA WL ++G KY LLC++HR+DG+ L L EEDL+SPP+ I++LGDIKR+
Sbjct: 1 VHEWTCEDVAKWLKKEGFSKYVDLLCNKHRIDGKVLLSLTEEDLRSPPLEIKVLGDIKRL 60
Query: 68 IYDIESFKKE 77
I +++
Sbjct: 61 WLAIRKLQRQ 70
>gnl|CDD|206528 pfam14360, PAP2_C, PAP2 superfamily C-terminal. This family is
closely related to the C-terminal a region of PAP2.
Length = 72
Score = 96.1 bits (240), Expect = 1e-24
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 278 TCGDYLFSGHTTAVTFLNFFITEYTPNTQIFYVLHLLAWVVNILAIGCILASHEHYSIDV 337
CGD +FSGHT T FI EY+P L ++AW+++++ I+AS HY++DV
Sbjct: 1 GCGDLIFSGHTVFTTLAFLFIWEYSPRW----FLKVIAWLLSLIGYFLIIASRFHYTVDV 56
Query: 338 FIAFYITSRLFLYYHS 353
+ +YIT+ +F YH+
Sbjct: 57 LLGYYITTLVFFLYHT 72
>gnl|CDD|188913 cd09514, SAM_SGMS1, SAM domain of sphingomyelin synthase. SAM
(sterile alpha motif) domain of SGMS-1 (sphingomyelin
synthase) subfamily is a potential protein-protein
interaction domain. Sphingomyelin synthase 1 is a
transmembrane protein with a SAM domain at the
N-terminus and a catalytic domain at the C-terminus.
Sphingomyelin synthase 1 is a Golgi-associated enzyme,
and depending on the concentration of diacylglycerol
and ceramide, can catalyze synthesis phosphocholine or
sphingomyelin, respectively. It plays a central role in
sphingolipid and glycerophospholipid metabolism.
Length = 72
Score = 46.7 bits (111), Expect = 5e-07
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 6 NFVLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIK 65
V+ W+ ++V++WL+++G +Y+ L DG+ L L EED K P+S+ +
Sbjct: 2 KEVVQWSPKEVSDWLSEEGMQEYSEAL---RSFDGQALLNLTEEDFKKTPLSLVSSDSGR 58
Query: 66 RIIYDIESFKKEIH 79
+++ IE+ K E H
Sbjct: 59 QLLEMIETLKIEHH 72
>gnl|CDD|188912 cd09513, SAM_BAR, SAM domain of BAR subfamily. SAM (sterile
alpha motif) domain of BAR (Bifunctional Apoptosis
Regulator) subfamily is a protein-protein interaction
domain. In addition to the SAM domain, this type of
regulator has a RING finger domain. Proteins of this
subfamily are involved in the apoptosis signal network.
Their overexpression in human neuronal cells
significantly protects cells from a broad range of cell
death stimuli. SAM domain can interact with Caspase8,
Bcl-2 and Bcl-X resulting in suppression of Bax-induced
cell death.
Length = 71
Score = 45.6 bits (108), Expect = 1e-06
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQ---HRLDGRGLFLLHEEDLKSPPISIEILGDI 64
V WT E+V WL Q G +A L ++ ++GR L L EE+L PP +IE
Sbjct: 1 VSKWTPEEVVLWLEQ--LGPWASLYRERFLSENVNGRLLLTLTEEELSKPPFNIENSLHR 58
Query: 65 KRIIYDIESFK 75
+ I+ ++E K
Sbjct: 59 RAILTELERVK 69
>gnl|CDD|215981 pfam00536, SAM_1, SAM domain (Sterile alpha motif). It has been
suggested that SAM is an evolutionarily conserved
protein binding domain that is involved in the
regulation of numerous developmental processes in
diverse eukaryotes. The SAM domain can potentially
function as a protein interaction module through its
ability to homo- and heterooligomerise with other SAM
domains.
Length = 62
Score = 43.0 bits (102), Expect = 7e-06
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYD 70
W+ E V WL G G+YA +DG L LL EEDL + + + G K+I+
Sbjct: 1 WSVEDVGEWLESIGLGQYADNF-RAGYIDGDALLLLTEEDLLK--LGVTLPGHRKKILSS 57
Query: 71 IESFK 75
I+ K
Sbjct: 58 IQGLK 62
>gnl|CDD|197735 smart00454, SAM, Sterile alpha motif. Widespread domain in
signalling and nuclear proteins. In EPH-related
tyrosine kinases, appears to mediate cell-cell
initiated signal transduction via the binding of
SH2-containing proteins to a conserved tyrosine that is
phosphorylated. In many cases mediates
homodimerisation.
Length = 68
Score = 41.9 bits (99), Expect = 2e-05
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLL-HEEDLKSPPISIEILGDIKR 66
V W+ E VA+WL G +YA ++ +DG L LL EEDLK + I LG K+
Sbjct: 1 VSQWSPESVADWLESIGLEQYADNF-RKNGIDGALLLLLTSEEDLKE--LGITKLGHRKK 57
Query: 67 IIYDIESFKK 76
I+ I+ K+
Sbjct: 58 ILKAIQKLKE 67
>gnl|CDD|188886 cd09487, SAM_superfamily, SAM (Sterile alpha motif ). SAM
(Sterile Alpha Motif) domain is a module consisting of
approximately 70 amino acids. This domain is found in
the Fungi/Metazoa group and in a restricted number of
bacteria. Proteins with SAM domains are represented by
a wide variety of domain architectures and have
different intracellular localization, including
nucleus, cytoplasm and membranes. SAM domains have
diverse functions. They can interact with proteins,
RNAs and membrane lipids, contain site of
phosphorylation and/or kinase docking site, and play a
role in protein homo and hetero
dimerization/oligomerization in processes ranging from
signal transduction to regulation of transcription.
Mutations in SAM domains have been linked to several
diseases.
Length = 56
Score = 39.5 bits (93), Expect = 1e-04
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 15 QVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
VA WL G +YA L ++ +DG L LL +EDLK + I G K+I
Sbjct: 1 DVAEWLESLGLEQYADLF-RKNEIDGDALLLLTDEDLKE--LGITSPGHRKKI 50
>gnl|CDD|188900 cd09501, SAM_SARM1-like_repeat1, SAM domain ot SARM1-like
proteins, repeat 1. SAM (sterile alpha motif) domain
repeat 1 of SARM1-like adaptor proteins is a
protein-protein interaction domain. SARM1-like proteins
contain two tandem SAM domains. SARM1-like proteins are
involved in TLR (Toll-like receptor) signaling. They
are responsible for targeted localization of the whole
protein to post-synaptic regions of axons. In humans
SARM1 expression is detected in kidney and liver.
Length = 69
Score = 37.3 bits (87), Expect = 8e-04
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLK 52
W+ V WL Q G YA + ++DG L L E++LK
Sbjct: 4 WSVADVQTWLKQIGFEDYAEKFSE-SQVDGDLLLQLTEDELK 44
>gnl|CDD|188911 cd09512, SAM_Neurabin-like, SAM domain of SAM_Neurabin-like
subfamily. SAM (sterile alpha motif) domain of
Neurabin-like (Neural actin-binding) subfamily is a
putative protein-protein interaction domain. This group
currently includes the SAM domains of neurobin-I,
SAMD14 and neurobin-I/SAMD14-like proteins. Most are
multidomain proteins and in addition to SAM domain they
contain other protein-binding domains such as PDZ and
actin-binding domains. Members of this subfamily
participate in signal transduction. Neurabin-I is
involved in the regulation of Ca signaling intensity in
alpha-adrenergic receptors; it forms a functional pair
of opposing regulators with neurabin-II. Neurabins are
expressed almost exclusively in neuronal cells. They
are known to interact with protein phosphatase 1 and
inhibit its activity; they also can bind actin
filaments; however, the exact role of the SAM domain is
unclear, since SAM doesn't participate in these
interactions.
Length = 70
Score = 35.3 bits (82), Expect = 0.004
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKS 53
V +W+ +QV WL G +Y P + +DG+ L L LK+
Sbjct: 4 VSEWSVQQVCQWLMGLGLEQYIPEFT-ANNIDGQQLLQLDSSKLKA 48
>gnl|CDD|188906 cd09507, SAM_DGK-delta-eta, SAM domain of diacylglycerol kinase
delta and eta subunits. SAM (sterile alpha motif)
domain of DGK-eta-delta subfamily proteins is a
protein-protein interaction domain. Proteins of this
subfamily are multidomain diacylglycerol kinases with a
SAM domain located at the C-terminus. DGK proteins
participate in signal transduction. They regulate the
level of second messengers such as diacylglycerol and
phosphatidic acid. The SAM domain of DGK proteins can
form high molecular weight homooligomers through
head-to-tail interactions as well as heterooligomers
between the SAM domains of DGK delta and eta proteins.
The oligomerization plays a role in the regulation of
DGK intracellular localization.
Length = 65
Score = 35.1 bits (81), Expect = 0.004
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEE--DLKSPPISIEILGDIK 65
V +WT+E+V WL G+Y + R D RG LLH E DLK + I +G +K
Sbjct: 2 VTNWTTEEVGAWLESLQLGEYRDIFA---RNDIRGSELLHLERRDLKD--LGITKVGHVK 56
Query: 66 RIIYDI 71
RI+ I
Sbjct: 57 RILQAI 62
>gnl|CDD|188908 cd09509, SAM_Polycomb, SAM domain of Polycomb group. SAM
(sterile alpha motif) domain of Polycomb group is a
protein-protein interaction domain. The Polycomb group
includes transcriptional repressors which are involved
in the regulation of some key regulatory genes during
development in many organisms. They are best known for
silencing Hox (Homeobox) genes. Polycomb proteins work
together in large multimeric and chromatin-associated
complexes. They organize chromatin of the target genes
and maintain repressed states during many cell
divisions. Polycomb proteins are classified based on
their common function, but not on conserved domains
and/or motifs; however many Polycomb proteins (members
of PRC1 class complex) contain SAM domains which are
more similar to each other inside of the Polycomb group
than to SAM domains outside of it. Most information
about structure and function of Polycomb SAM domains
comes from studies of Ph (Polyhomeotic) and Scm (Sex
comb on midleg) proteins. Polycomb SAM domains usually
can be found at the C-terminus of the proteins. Some
members of this group contain, in addition to the SAM
domain, MTB repeats, Zn finger, and/or DUF3588
domains. Polycomb SAM domains can form homo- and/or
heterooligomers through ML and EH surfaces. SAM/SAM
oligomers apparently play a role in transcriptional
repression through polymerization along the chromosome.
Polycomb proteins are known to be highly expressed in
some cells years before their cancer pathology; thus
they are attractive markers for early cancer therapy.
Length = 64
Score = 34.8 bits (81), Expect = 0.006
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 8 VLDWTSEQVANWLTQKGH-GKYAPLLCDQHRLDGRGLFLLHEEDL 51
W+ + VA ++ +YA + + +DG+ L LL E+DL
Sbjct: 1 PSKWSVDDVAQFIKSLDGCAEYAEVFR-EQEIDGQALLLLTEDDL 44
>gnl|CDD|203706 pfam07647, SAM_2, SAM domain (Sterile alpha motif).
Length = 66
Score = 33.8 bits (78), Expect = 0.014
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYD 70
W+ E VA WL G +YA DQ G L L EEDLK+ + I +G K+I+
Sbjct: 4 WSPEDVAEWLRSIGLPQYADNFRDQGITGGELLLRLTEEDLKA--LGITSVGHRKKILKK 61
Query: 71 IESFK 75
I+ K
Sbjct: 62 IQRLK 66
>gnl|CDD|188904 cd09505, SAM_WDSUB1, SAM domain of WDSUB1 proteins. SAM (sterile
alpha motif) domain of WDSUB1 subfamily proteins is a
putative protein-protein interaction domain. Proteins
of this group contain multiple domains: SAM, one or
more WD40 repeats and U-box (derived version of the
RING-finger domain). Apparently the WDSUB1 subfamily
proteins participate in protein degradation through
ubiquitination, since U-box domain are known as a
member of E3 ubiquitin ligase family, while SAM and
WD40 domains most probably are responsible for an E2
ubiquitin-conjugating enzyme binding and a target
protein binding.
Length = 72
Score = 33.8 bits (78), Expect = 0.015
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 7 FVLDWTSEQVANWLTQKGHGKYAPLLCDQHR---LDGRGLFLLHEEDLKSPPISIEILGD 63
+ DW+ E V WL G +Y + R +DG+ L L +E L S + IE LG
Sbjct: 1 SLQDWSEEDVCTWLRSIGLEQY----VEVFRANNIDGKELLNLTKESL-SKDLKIESLGH 55
Query: 64 IKRIIYDIESFKKE 77
+I+ IE K +
Sbjct: 56 RNKILRKIEELKMK 69
>gnl|CDD|188982 cd09583, SAM_Atherin-like, SAM domain of Atherin/Atherin-like
subfamily. SAM (sterile alpha motif) domain of
SAM_Atherin and Atherin-like subfamily proteins is a
putative protein-protein and/or protein-lipid
interaction domain. In addition to the C-terminal SAM
domain, the majority of proteins belonging to this
group also have PHD (or Zn finger) domain. As potential
members of the polycomb group, these proteins may be
involved in regulation of some key regulatory genes
during development. Atherin can be recruited by
Ruk/CIN85 kinase-binding proteins via its SH3 domains
thus participating in the signal transferring kinase
cascades. Also, atherin was found associated with low
density lipids (LDL) in atherosclerotic lesions in
human. It was suggested that atherin plays an essential
role in atherogenesis via immobilization of LDL in the
arterial wall. SAM domains of atherins are predicted to
form polymers. Inhibition of polymer formation could be
a potential antiatherosclerotic therapy.
Length = 69
Score = 33.4 bits (77), Expect = 0.019
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEED 50
+W+ E V + G + A +Q +DG+ L LL D
Sbjct: 1 PSNWSVEDVVQYFKTAGFPEEANAFKEQE-IDGKSLLLLTRSD 42
>gnl|CDD|188928 cd09529, SAM_MLTK, SAM domain of MLTK subfamily. SAM (sterile
alpha motif) domain of MLTK subfamily is a
protein-protein interaction domain. Besides SAM domain,
these proteins have N-terminal protein tyrosine kinase
domain and leucine-zipper motif. Proteins of this group
act as mitogen-activated protein triple kinase in a
number of MAPK cascades. They can be activated by
autophosphorylation in response to stress signals.
MLTK-alpha is known to phosphorylate histone H3. In
mammals, MLTKs participate in the activation of the
JNK/SAPK, p38, ERK5 pathways, the transcriptional
factor NF-kB, in the regulation of the cell cycle
checkpoint, and in the induction of apoptosis in a
hepatoma cell line. Some members of this subfamily are
proto-oncogenes, thus MLTK-alpha is involved in
neoplasmic cell transformation and/or skin cancer
development in athymic nude mice. Based on in vivo
coprecipitation experiments in mammalian cells, it has
been demonstrated that MLTK proteins might form
homodimers/oligomers via their SAM domains.
Length = 71
Score = 33.2 bits (76), Expect = 0.022
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 11 WTSEQVANWLTQ--------KGHGKYAPLLCDQHRLDGRGLFLLHEEDLK 52
WT E V W+ Q +YA L ++ + G+ L LL EEDL+
Sbjct: 2 WTEEDVHFWMQQLVRKGGHPSELSQYADLF-KENHITGKRLLLLTEEDLR 50
>gnl|CDD|188929 cd09530, SAM_Samd14, SAM domain of Samd14 subfamily. SAM
(sterile alpha motif) domain of SamD14 (or FAM15A)
subfamily is a putative protein-protein interaction
domain. SAM is widespread domain in proteins involved
in signal transduction and regulation. In many cases
SAM mediates homodimerization/oligomerization. The
exact function of proteins belonging to this subfamily
is unknown.
Length = 67
Score = 33.1 bits (76), Expect = 0.024
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 9 LDWTSEQVANWLTQKGHGKYAPLLC-DQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
L W +E VA W+ G +Y C + +DGR L L+ L P + + IK I
Sbjct: 1 LSWDTEDVAEWIEGLGFPQYR--ECFTTNFIDGRKLILVDASTL--PRMGVTDFEHIKAI 56
Query: 68 IYDI 71
I
Sbjct: 57 ARKI 60
>gnl|CDD|188962 cd09563, SAM_liprin-beta1,2_repeat1, SAM domain of liprin-beta1,2
proteins repeat 1. SAM (sterile alpha motif) domain
repeat 1 of liprin-beta1,2 proteins is a
protein-protein interaction domain. Liprin-beta protein
contain three copies (repeats) of SAM domain. They may
form heterodimers with liprins-alpha through their SAM
domains. It was suggested based on bioinformatic
approaches that the second SAM domain of liprin-beta is
potentially able to form polymers. Liprins were
originally identified as LAR (leukocyte common
antigen-related) transmembrane protein-tyrosine
phosphatase-interacting proteins. They participate in
mammary gland development, in axon guidance, and in the
maintenance of lymphatic vessel integrity.
Length = 64
Score = 32.6 bits (75), Expect = 0.035
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 10 DWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLF 44
+W++EQV +WL + G G+Y C + G+ L
Sbjct: 3 EWSTEQVCDWLAELGLGQYVD-ECRRWVKSGQTLL 36
>gnl|CDD|188975 cd09576, SAM_DGK-eta, SAM domain of diacylglycerol kinase eta.
SAM (sterile alpha motif) domain of DGK-eta subfamily
proteins is a protein-protein interaction domain.
Proteins of this subfamily are multidomain
diacylglycerol kinases. The SAM domain is located at
the C-terminus of two out of three isoforms of DGK-eta
protein. DGK-eta proteins participate in signal
transduction. They regulate the level of second
messengers such as diacylglycerol and phosphatidic
acid. The SAM domain of DCK-eta proteins can form high
molecular weight homooligomers through head-to-tail
interactions as well as heterooligomers with the SAM
domain of DGK-delta proteins. The oligomerization plays
a role in the regulation of the DGK-delta intracellular
localization: it is responsible for sustained endosomal
localization of the protein and resulted in negative
regulation of DCK-eta catalytic activity.
Length = 65
Score = 32.6 bits (74), Expect = 0.035
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
V W +++VA WL G+Y + R D RG LLH E + I +G +KRI
Sbjct: 2 VQKWGTDEVAAWLDLLSLGEYKEIFI---RHDIRGSELLHLERRDLKDLGIPKVGHMKRI 58
Query: 68 IYDIESF 74
+ I+
Sbjct: 59 LQGIKEL 65
>gnl|CDD|188927 cd09528, SAM_Samd9_Samd9L, SAM domain of Samd9/Samd9L subfamily.
SAM (sterile alpha motif) domain of Samd9/Samd9L
subfamily is a putative protein-protein interaction
domain. SAM is a widespread domain in signaling
proteins. Samd9 is a tumor suppressor gene. It is
involved in death signaling of malignant glioblastoma.
Samd9 suppression blocks cancer cell death induced by
HVJ-E or IFN-beta treatment. Deleterious mutations in
Samd9 lead to normophosphatemic familial tumoral
calcinosis, a cutaneous disorder characterized by
cutaneous calcification or ossification.
Length = 64
Score = 31.2 bits (71), Expect = 0.11
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 10 DWTSEQVANWLTQKG-HGKYAPLLCDQHRLDGRGLFLLHEEDLK 52
DWT E V WL + KYA +L ++ + G L L EEDL
Sbjct: 2 DWTKEHVKQWLIEDLIDKKYAEILYEE-EVTGAVLKELTEEDLV 44
>gnl|CDD|188974 cd09575, SAM_DGK-delta, SAM domain of diacylglycerol kinase
delta. SAM (sterile alpha motif) domain of DGK-delta
subfamily proteins is a protein-protein interaction
domain. Proteins of this subfamily are multidomain
diacylglycerol kinases with a SAM domain located at the
C-terminus. DGK-delta proteins participate in signal
transduction. They regulate the level of second
messengers such as diacylglycerol and phosphatidic
acid. In particular DGK-delta is involved in the
regulation of clathrin-dependent endocytosis. The SAM
domain of DGK-delta proteins can form high molecular
weight homooligomers through head-to-tail interactions
as well as heterooligomers with the SAM domain of
DGK-eta proteins. The oligomerization plays a role in
the regulation of the DGK-delta intracellular
localization: it inhibits the translocation of the
protein to the plasma membrane from the cytoplasm. The
SAM domain also can bind Zn at multiple (not conserved)
sites driving the formation of highly ordered large
sheets of polymers, thus suggesting that Zn may play
important role in the function of DCK-delta.
Length = 65
Score = 31.1 bits (70), Expect = 0.12
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEE--DLKSPPISIEILGDIKRII 68
W +E+VA WL +Y + R D RG LLH E DLK ++ +G +KRI+
Sbjct: 5 WGTEEVAAWLEHLSLCEYKDIFT---RHDVRGSELLHLERRDLKDLGVT--KVGHMKRIL 59
Query: 69 YDIE 72
I+
Sbjct: 60 CGIK 63
>gnl|CDD|188905 cd09506, SAM_Shank1,2,3, SAM domain of Shank1,2,3 family
proteins. SAM (sterile alpha motif) domain of
Shank1,2,3 family proteins is a protein-protein
interaction domain. Shank1,2,3 proteins are scaffold
proteins that are known to interact with a variety of
cytoplasmic and membrane proteins. SAM domains of the
Shank1,2,3 family are prone to homooligomerization.
They are highly enriched in the postsynaptic density,
acting as scaffolds to organize assembly of
postsynaptic proteins. SAM domains of Shank3 proteins
can form large sheets of helical fibers. Shank genes
show distinct patterns of expression, in rat Shank1
mRNA is found almost exclusively in brain, Shank2 in
brain, kidney and liver, and Shank3 in heart, brain and
spleen.
Length = 66
Score = 30.4 bits (69), Expect = 0.24
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDL 51
V +WT + V +WL G++ D + +DG L L +EDL
Sbjct: 2 VHEWTVDDVGDWLESLNLGEHRERFMD-NEIDGSHLPNLDKEDL 44
>gnl|CDD|188934 cd09535, SAM_BOI-like_fungal, SAM domain of BOI-like fungal
subfamily. SAM (sterile alpha motif) domain of
BOI-like fungal subfamily is a potential
protein-protein interaction domain. Proteins of this
subfamily are apparently scaffold proteins, since most
contain SH3 and PH domains, which are also
protein-protein interaction domains, in addition to SAM
domain. BOI-like proteins participate in cell cycle
regulation. In particular BOI1 and BOI2 proteins of
budding yeast S.cerevisiae are involved in bud
formation, and POB1 protein of fission yeast S.pombe
plays a role in cell elongation and separation. Among
binding partners of BOI-like fungal subfamily members
are such proteins as Bem1 and Cdc42 (they are known to
be involved in cell polarization and bud formation).
Length = 65
Score = 30.2 bits (69), Expect = 0.25
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 23/79 (29%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCD---QHRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
W+ EQVA WL G + +C+ ++ + G L L EDLK E+
Sbjct: 3 WSPEQVAEWLLSAG---FDDSVCEKFRENEITGDILLELDLEDLK------EL------- 46
Query: 68 IYDIESFKK--EIHNDIRD 84
DI SF K ++ N+I+
Sbjct: 47 --DIGSFGKRFKLWNEIKS 63
>gnl|CDD|188967 cd09568, SAM_liprin-alpha1,2,3,4_repeat3, SAM domain of
liprin-alpha1,2,3,4 proteins repeat 3. SAM (sterile
alpha motif) domain repeat 3 of liprin-alpha1,2,3,4
proteins is a protein-protein interaction domain.
Liprin-alpha proteins contain three copies (repeats) of
SAM domain. They may form heterodimers with liprin-beta
proteins through their SAM domains. Liprins were
originally identified as LAR (leukocyte common
antigen-related) transmembrane protein-tyrosine
phosphatase-interacting proteins. They participate in
mammary gland development and in axon guidance; in
particular, liprin-alpha is involved in formation of
the presynaptic active zone.
Length = 72
Score = 30.4 bits (69), Expect = 0.29
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCD 34
VL W++E+V W+ G +YA L +
Sbjct: 2 VLVWSNERVIRWVQSIGLREYANNLLE 28
>gnl|CDD|188932 cd09533, SAM_Ste50-like_fungal, SAM domain of Ste50_like (ubc2)
subfamily. SAM (sterile alpha motif) domain of
Ste50-like (or Ubc2 for Ustilago bypass of cyclase)
subfamily is a putative protein-protein interaction
domain. This group includes only fungal proteins.
Basidiomycetes have an N-terminal SAM domain, central
UBQ domain, and C-terminal SH3 domain, while
Ascomycetes lack the SH3 domain. Ubc2 of Ustilago
maydis is a major virulence and maize pathogenicity
factor. It is required for filamentous growth (the
budding haploid form of Ustilago maydis is a
saprophyte, while filamentous dikaryotic form is a
pathogen). Also the Ubc2 protein is involved in the
pheromone-responsive morphogenesis via the MAP kinase
cascade. The SAM domain is necessary for ubc2 function;
deletion of SAM eliminates this function. A Lys-to-Glu
mutation in the SAM domain of ubc2 gene induces
temperature sensitivity.
Length = 58
Score = 29.2 bits (66), Expect = 0.50
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 15 QVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPIS 57
VA+WL+ G +Y + + + G L L EDLK I+
Sbjct: 1 DVADWLSSLGLPQYEDQFIE-NGITGDVLVALDHEDLKEMGIT 42
>gnl|CDD|188876 cd08203, SAM_PNT, Sterile alpha motif (SAM)/Pointed domain.
Sterile alpha motif (SAM)/Pointed domain is found in
about 40% of transcriptional regulators of ETS family
(initially named for Erythroblastosis virus, E26-E
Twenty Six). SAM Pointed domain containing proteins of
this family additionally have a C-terminal ETS
DNA-binding domain. In a few cases, SAM Pointed domain
appears as a single domain protein. Members of this
group are mostly involved in regulation of embryonic
development and growth control in eukaryotes. SAM
Pointed domains mediate protein-protein interactions.
Depending on the subgroup, they can interact with other
SAM Pointed domains forming homo or hetero
dimers/oligomers and/or they can recruit a protein
kinase to its target which can be a SAM Pointed domain
containing protein itself or another protein that has
no kinase docking site. Thus, SAM Pointed domains
participate in transcriptional regulation and signal
transduction. Some genes coding ETS family
transcriptional regulators are proto-oncogenes. They
are prone to chromosomal translocations resulting in
gene fusions. Chimeric proteins with SAM Pointed
domains were found in a number of different human
tumors including myeloid leukemia, lymphoblastic
leukemia, Ewing's sarcoma and primitive neuroectodermal
tumor. Members of this family are potential targets for
cancer therapy.
Length = 67
Score = 29.2 bits (66), Expect = 0.53
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 9 LDWTSEQVANWLT-QKGHGKYAPLLCDQHRLDGRGLFLLHEEDL--KSPPISIEIL 61
L+WT E V WL+ P+ D+ ++G+ L L +ED ++P ++L
Sbjct: 3 LEWTPEHVQQWLSWVSKKFSLDPIDPDRFPMNGKELCALSKEDFRERAPSRGGDVL 58
>gnl|CDD|216247 pfam01019, G_glu_transpept, Gamma-glutamyltranspeptidase.
Length = 495
Score = 30.6 bits (70), Expect = 1.6
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 144 FVVSWILAFVMVIVHDRVPDMKKYPPLPDIFLDNI-PLVPWA-FKLSEICGTL 194
F VS LA + P ++ P L IFL P K + TL
Sbjct: 117 FPVSPYLAAAL---ALAEPRLRADPGLAKIFLPTGKPPKAGDLLKQPALAKTL 166
>gnl|CDD|173472 PTZ00192, PTZ00192, 60S ribosomal protein L13; Provisional.
Length = 218
Score = 30.3 bits (68), Expect = 1.6
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 88 DPRSLVKITRSHSAMVESTSSYVSREVVVIPRGNFKVQDNILKPELVKMVVAAVYLFVVS 147
D R K + V+ +Y+S+ +V+ P + KVQ K E VK F +
Sbjct: 103 DRRRKNKSEEGMNVNVQRLKTYMSK-LVLFPMNHKKVQKGEAKEEEVKAATQDRSRFGDA 161
Query: 148 WILAFVM 154
+ V
Sbjct: 162 AVGGVVT 168
>gnl|CDD|238813 cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine
phosphatases and vanadium haloperoxidases, includes type
2 phosphatidic acid phosphatase or lipid phosphate
phosphatase (LPP), Glucose-6-phosphatase,
Phosphatidylglycerophosphatase B and bacterial acid
phosphatase, vanadium chloroperoxidases, vanadium
bromoperoxidases, and several other mostly
uncharacterized subfamilies. Several members of this
superfamily have been predicted to be transmembrane
proteins.
Length = 122
Score = 29.4 bits (66), Expect = 1.7
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 285 SGHTTAVTFLNFFITEYTPNTQIFYVLHLLAWVVNILAIGCILASHEHYSIDVFIAFYI 343
SGH L F+ P + +L LL ++ +L + HY DV +
Sbjct: 55 SGHAAFAFALALFLALLLPRRLLRLLLGLLLLLLALLVGLSRVYLGVHYPSDVLAGALL 113
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and
metabolism].
Length = 409
Score = 30.2 bits (69), Expect = 2.0
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 132 ELVKMVVAAVYLFVVSWILAFVM-VIVHDRVPD 163
+L+ ++V VY FVV++I+ V+ +I+ RV +
Sbjct: 353 QLLGVLVTIVYAFVVTFIILKVLKLIIGLRVSE 385
>gnl|CDD|188925 cd09526, SAM_Samd3, SAM domain of Samd3 subfamily. SAM (sterile
alpha motif) domain of the Samd3 subfamily is a
putative protein-protein interaction domain. Proteins
of this subfamily have a SAM domain at the N-terminus.
SAM is a widespread domain in signaling and regulatory
proteins. In many cases SAM mediates
dimerization/oligomerization. Exact function of
proteins belonging to this subfamily is unknown.
Length = 66
Score = 27.7 bits (61), Expect = 2.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 11 WTSEQVANWLTQKGHGKYAP 30
W+ EQV NWL +K G+ P
Sbjct: 4 WSVEQVCNWLVEKNLGELVP 23
>gnl|CDD|204391 pfam10073, DUF2312, Uncharacterized protein conserved in bacteria
(DUF2312). Members of this family of hypothetical
bacterial proteins have no known function. Structural
modelling suggests this domain may bind nucleic acids.
Length = 74
Score = 27.6 bits (62), Expect = 2.4
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 10/46 (21%)
Query: 62 GDIKRIIYDIESF---KKEIHNDIRD-------RGYDPRSLVKITR 97
+++ I IE KK+I +DI+D G+D ++L +I +
Sbjct: 4 DQLRQFIERIERLEEEKKDIADDIKDVYAEAKGNGFDTKALRQIIK 49
>gnl|CDD|216577 pfam01569, PAP2, PAP2 superfamily. This family includes the enzyme
type 2 phosphatidic acid phosphatase (PAP2),
Glucose-6-phosphatase EC:3.1.3.9,
Phosphatidylglycerophosphatase B EC:3.1.3.27 and
bacterial acid phosphatase EC:3.1.3.2. The family also
includes a variety of haloperoxidases that function by
oxidising halides in the presence of hydrogen peroxide
to form the corresponding hypohalous acids.
Length = 123
Score = 28.6 bits (64), Expect = 2.9
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 285 SGHTTAVTFLNFFITEYTPNTQIFYVLHLLAWVVNILAIGCILASHEHYSIDVFIAFYIT 344
SGH L F+ + +L LL + L + H+ DV +
Sbjct: 49 SGHAATAFALALFLALLLKR-RRPKLLALLLLALAALVGLSRVYLGAHFPSDVLAGALLG 107
Query: 345 SRLFLYYHSLANN 357
+ + L + L
Sbjct: 108 ALVALLVYRLLKK 120
>gnl|CDD|227668 COG5377, COG5377, Phage-related protein, predicted endonuclease
[DNA replication, recombination, and repair].
Length = 319
Score = 29.5 bits (66), Expect = 3.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 58 IEILGDIKRIIYDIESFKKEIHNDIRD 84
+ +L IKR I ++E F KEI N +++
Sbjct: 234 LAVLHSIKRDISELEDFAKEIENRLKN 260
>gnl|CDD|217981 pfam04235, DUF418, Protein of unknown function (DUF418). Probable
integral membrane protein.
Length = 163
Score = 28.7 bits (65), Expect = 3.5
Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 130 KPELVKMVVAAVYLFVVSWILAFVMVIVHDRVPDMKKYPPLPDIFLDNIPLVPWAFKLSE 189
+ L ++++ + L + +L ++ + P PL F LS
Sbjct: 14 RRLLRRLLLIGLLLGLPLNLLGALLAALGWESP----------------PLGLLGFILSM 57
Query: 190 ICGTLLMFIWISVCI--FHKHRTILLRRFFALLG----TAYLLRSV 229
+ G L + ++ + + + + L R A +G T YLL+S+
Sbjct: 58 LGGPALALGYAALIVLLYQREKGRKLLRPLAAVGRMALTNYLLQSI 103
>gnl|CDD|226362 COG3843, VirD2, Type IV secretory pathway, VirD2 components
(relaxase) [Intracellular trafficking and secretion].
Length = 326
Score = 29.0 bits (65), Expect = 4.8
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 14/68 (20%)
Query: 32 LCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYDIESFKKEIHNDIRDRGYDPRS 91
L + L+ R L E LK +R+ Y K H D +D +
Sbjct: 158 LGPKEDLEAR--KRLERESLK------------ERLTYLQRQLKPHAHLDHIHLDFDINA 203
Query: 92 LVKITRSH 99
++T
Sbjct: 204 TPQLTDRK 211
>gnl|CDD|236381 PRK09108, PRK09108, type III secretion system protein HrcU;
Validated.
Length = 353
Score = 28.9 bits (65), Expect = 5.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 132 ELVKMVVAAVYLFVVSW--ILAFVMVIVHDRVPDMKKYPPLPDI 173
ELVKM+V AV + V W I + + +IV Y PD+
Sbjct: 140 ELVKMIVKAVVIAAVLWKGITSLMPLIVG------AAYQSPPDL 177
>gnl|CDD|223482 COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and
metabolism].
Length = 539
Score = 28.7 bits (65), Expect = 6.0
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 144 FVVSWILAFVMVIVHDRVPDMKKYPPLPDIFLDN-IPLVPWA-FKLSEICGTL 194
F VS LA ++ + K P IFL PL K ++ TL
Sbjct: 150 FPVSPRLAALI---ASAAERLAKDPETAAIFLPPGKPLKAGDLLKQPDLAKTL 199
>gnl|CDD|200492 cd11355, AmyAc_Sucrose_phosphorylase, Alpha amylase catalytic
domain found in sucrose phosphorylase (also called
sucrose glucosyltransferase, disaccharide
glucosyltransferase, and sucrose-phosphate alpha-D
glucosyltransferase). Sucrose phosphorylase is a
bacterial enzyme that catalyzes the phosphorolysis of
sucrose to yield glucose-1-phosphate and fructose. These
enzymes do not have the conserved calcium ion present in
other alpha amylase family enzymes. The Alpha-amylase
family comprises the largest family of glycoside
hydrolases (GH), with the majority of enzymes acting on
starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 433
Score = 28.7 bits (65), Expect = 6.3
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 24/85 (28%)
Query: 296 FFITEYTPNTQIFYVLHLLAWVVNILAIGCILASHEHYSIDVFIAFYITSRLFLYY---- 351
FF+ + + L LA + L I + H HYSI + IA + Y
Sbjct: 204 FFVEP-----ETWEFLDELAQIAKPLGIEVLPEIHSHYSIQIKIA----EKGDWVYDFAL 254
Query: 352 -----HSLANNQALYQKDSHRVRIW 371
H LY DS R++ W
Sbjct: 255 PPLVLH------TLYSGDSRRLKHW 273
>gnl|CDD|188910 cd09511, SAM_CNK1,2,3-suppressor, SAM domain of
CNK1,2,3-suppressor subfamily. SAM (sterile alpha
motif) domain of CNK (connector enhancer of kinase
suppressor of ras (Ksr)) subfamily is a protein-protein
interaction domain. CNK proteins are multidomain
scaffold proteins containing a few protein-protein
interaction domains and are required for connecting Rho
and Ras signaling pathways. In Drosophila, the SAM
domain of CNK is known to interact with the SAM domain
of the aveugle protein, forming a heterodimer. Mutation
of the SAM domain in human CNK1 abolishes the ability
to cooperate with the Ras effector, supporting the idea
that this interaction is necessary for proper Ras
signal transduction.
Length = 69
Score = 26.5 bits (59), Expect = 6.5
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 8 VLDWTSEQVANWL 20
V W+ +QV +WL
Sbjct: 1 VAKWSPKQVTDWL 13
>gnl|CDD|218835 pfam05975, EcsB, Bacterial ABC transporter protein EcsB. This
family consists of several bacterial ABC transporter
proteins which are homologous to the EcsB protein of
Bacillus subtilis. EcsB is thought to encode a
hydrophobic protein with six membrane-spanning helices
in a pattern found in other hydrophobic components of
ABC transporters.
Length = 385
Score = 28.7 bits (65), Expect = 6.7
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 309 YVLHLLAWVVNILAIGCILASHEHYSIDVFIAFYITSRLFLYYHSLANNQALYQKDSHRV 368
+L L+ V+ + + +L SI ++ + L ++ L + LY + R
Sbjct: 105 LILQLILQVLLAILLLPLLLKILGLSILQYVLLLLFLLLLKAWNLLLKWRILYLVEGKRW 164
Query: 369 RIWFPLF 375
+ L
Sbjct: 165 DLLIRLI 171
>gnl|CDD|224000 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit
(contains helicase and exonuclease domains) [DNA
replication, recombination, and repair].
Length = 1139
Score = 28.6 bits (64), Expect = 7.4
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 62 GDIKRIIY-----DIESFKKEIHNDIRDRGYDPRSLVKITRSHSAMVEST 106
GD K+ IY DI +F + ++ L RS ++ +
Sbjct: 416 GDPKQSIYRFRGADIFTFLEAASSEKAFARIT---LETNYRSTPELLNAV 462
>gnl|CDD|188981 cd09582, SAM_Scm-like-3MBT3,4, SAM domain of Scm-like-3MBT3,4
proteins of Polycomb group. SAM (sterile alpha motif)
domain of Scm-like-3MBT3,4 (Sex comb on midleg,
Malignant brain tumor) subfamily proteins (also known
as L3mbtl3,4 proteins) is a putative protein-protein
interaction domain. Proteins of this subfamily are
predicted transcriptional regulators belonging to
Polycomb group. The majority of them are multidomain
proteins: in addition to the C-terminal SAM domain,
they contain three MBT repeats and Zn finger domain.
Murine L3mbtl3 protein of this subfamily is essential
for maturation of myeloid progenitor cells during
differentiation. Human L3mbtl4 is a potential tumor
suppressor gene in breast cancer, while deregulation of
L3MBTL3 is associated with neuroblastoma.
Length = 66
Score = 26.1 bits (58), Expect = 7.4
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 8 VLDWTSEQVANWL-TQKGHGKYAPLLCDQHRLDGRGLFLLHEEDL 51
VL W+ ++VA ++ + G ++A + D ++DG LL + DL
Sbjct: 1 VLRWSVDEVAEFVQSLPGCEEHAKVFRD-EQIDGEAFLLLTQSDL 44
>gnl|CDD|131310 TIGR02257, cobalto_cobN, cobaltochelatase, CobN subunit.
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 1122
Score = 28.5 bits (64), Expect = 8.0
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 9 LDWTSEQVANWL----TQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDI 64
+ W ++ ANW+ + A +L + DGR + + L +P + IL +
Sbjct: 350 IKWVADLAANWIKLQRKPNAERRIALVLANYPVRDGR---IGNGVGLDTPASVVNILHAL 406
Query: 65 KRIIYDIES 73
K YD+
Sbjct: 407 KEQGYDLGG 415
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.142 0.438
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,149,593
Number of extensions: 2232141
Number of successful extensions: 2938
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2921
Number of HSP's successfully gapped: 78
Length of query: 418
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 319
Effective length of database: 6,546,556
Effective search space: 2088351364
Effective search space used: 2088351364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (26.9 bits)