RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy135
(418 letters)
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1;
cell-free protein synthesis, protein regulation, lipid
metabolism, structural genomics; NMR {Mus musculus}
SCOP: a.60.1.2
Length = 97
Score = 85.2 bits (210), Expect = 1e-20
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
V+ W+ ++VA+WL + +Y L G+ L L +ED K PP+ + +R+
Sbjct: 17 VVYWSPKKVADWLLENAMPEYCEPL---EHFTGQDLINLTQEDFKKPPLYRVSSDNGQRL 73
Query: 68 IYDIESFKKEIH 79
+ IE+ K E H
Sbjct: 74 LDMIETLKMEHH 85
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 91
Score = 61.9 bits (150), Expect = 2e-12
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 8 VLDWTSEQVANWLTQKG--HGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIK 65
V WT+E+V WL Q G Y R++GR L L EE+ P +IE +
Sbjct: 17 VDKWTTEEVVLWLEQLGPWASLYRDRFL-SERVNGRLLLTLTEEEFSRAPYTIENSSHRR 75
Query: 66 RIIYDIESFK 75
I+ ++E +
Sbjct: 76 VILTELERVR 85
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain,
alternative splicing, cytoplasm, membrane,
metal-binding, phorbol-ester binding; 2.90A {Homo
sapiens}
Length = 81
Score = 61.2 bits (149), Expect = 3e-12
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 1 MENAENFVLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEI 60
ME V W +E+VA WL +Y + +H + G GL L DLK + +
Sbjct: 1 MEKTRP-VHLWGTEEVAAWLEHLSLCEYKDIFT-RHDIRGSGLLHLERRDLKD--LGVTK 56
Query: 61 LGDIKRIIYDIESFKKE 77
+G +KRI+ I+ +
Sbjct: 57 VGHMKRILCGIKELSRS 73
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction,
protein binding; NMR {Rattus norvegicus}
Length = 74
Score = 58.5 bits (142), Expect = 2e-11
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
V +W+ +QV++WL +Y + G L L LK+ + + D +
Sbjct: 4 VHEWSVQQVSHWLVGLSLDQYVSEFSA-QNISGEQLLQLDGNKLKA--LGMTSSQDRALV 60
Query: 68 IYDIESFKKE 77
++ K
Sbjct: 61 KKKLKEMKMS 70
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density,
SAM domain, shank, scaffolding protein, structural
protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB:
2f44_A
Length = 76
Score = 57.0 bits (138), Expect = 8e-11
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
+ W+ V +WL G++ D H ++G L L +ED + + +G + I
Sbjct: 2 LQLWSKFDVGDWLESIHLGEHRDRFED-HEIEGAHLPALTKEDFVE--LGVTRVGHRENI 58
Query: 68 ---IYDIESFKKEIHN 80
+ ++ ++ H+
Sbjct: 59 ERALRQLDGSRRHHHH 74
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 103
Score = 54.9 bits (132), Expect = 8e-10
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPL-LCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKR 66
W EQV ++L + G + L ++ + G L L E + + + LG+ K+
Sbjct: 27 YKTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFE--NLGVSSLGERKK 84
Query: 67 IIYDIESFKK 76
++ I+ +
Sbjct: 85 LLSYIQRLVQ 94
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 51.7 bits (124), Expect = 6e-09
Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 8 VLDWTSEQVANWLTQKGH--GKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIK 65
V W+ QV +W+ +Y + ++ G L + ++L+ + + +G +
Sbjct: 8 VSKWSPSQVVDWMKGLDDCLQQYIKNFE-REKISGDQLLRITHQELED--LGVSRIGHQE 64
Query: 66 RIIYDIESFKKEIHNDIRDRGYDPRS 91
I+ ++ + P S
Sbjct: 65 LILEAVD--------LLCALNSGPSS 82
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha
motif, SAM domain, SAM domain dimer, SAM domain
complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Length = 80
Score = 50.1 bits (120), Expect = 2e-08
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 8 VLDWTSEQVANWLTQKGH--GKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIK 65
V W+ QV +W+ +Y + ++ G L + ++L+ + + +G +
Sbjct: 4 VSKWSPSQVVDWMKGLDDCLQQYIKNFE-REKISGDQLLRITHQELED--LGVSRIGHQE 60
Query: 66 RIIYDIESFK 75
I+ ++
Sbjct: 61 LILEAVDLLC 70
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain
dimer, SAM domain complex, cytoplasm, membrane; 2.00A
{Drosophila melanogaster}
Length = 106
Score = 50.8 bits (121), Expect = 2e-08
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 8 VLDWTSEQVANWLTQK--GHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIK 65
V WT V W + + +Y L H + GR L + + L+ + + D +
Sbjct: 23 VYLWTVSDVLKWYRRHCGEYTQYEQLFAQ-HDITGRALLRITDSSLQR--MGVTDNRDRE 79
Query: 66 RIIYDIESFK-KEIHNDIRD 84
I +I + K +IRD
Sbjct: 80 AIWREIVKQRLKTDIMEIRD 99
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm,
membrane, sensory transduction, vision, signaling
protein; 1.90A {Drosophila melanogaster}
Length = 78
Score = 47.9 bits (114), Expect = 1e-07
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 8 VLDWTSEQVANWLTQK--GHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIK 65
V WT V W + + +Y L QH + GR L + + L+ + + D +
Sbjct: 3 VYLWTVSDVLKWYRRHCGEYTQYEQLFA-QHDITGRALLRITDSSLQR--MGVTDNRDRE 59
Query: 66 RIIYDIESFKK 76
I +I +
Sbjct: 60 AIWREIVKQRL 70
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Length = 265
Score = 51.0 bits (121), Expect = 2e-07
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
WT EQV +WL ++G G Y + G+ L ++DL+ + I+ K++
Sbjct: 15 FAKWTKEQVCSWLAEQGLGSYLS-SGKHWIISGQTLLQASQQDLEK-ELGIKHSLHRKKL 72
Query: 68 IYDIESFKKEIHNDIRDRGYDPR 90
+++ E + ++
Sbjct: 73 QLALQALGSEEETNYGKLDFNWV 95
Score = 31.3 bits (70), Expect = 0.47
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPI-SIEILGDIKRIIY 69
V WL G +Y + R+DGR L + +DL S + S+ IKR I
Sbjct: 90 LDFNWVTRWLDDIGLPQYKTQFDE-GRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQ 148
Query: 70 DIESFKKEIHNDIRDR 85
+ E + R
Sbjct: 149 VLRINNFEPNCLRRRP 164
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers,
transcriptional repression, transcription repression;
1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB:
1pk3_A
Length = 89
Score = 46.8 bits (111), Expect = 4e-07
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 8 VLDWTSEQVANWLTQ--KGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIK 65
+DWT E+V ++ + L +DG+ L L+ E + + ++ LG
Sbjct: 14 PIDWTIEEVIQYIESNDNSLAVHGDLFRKHE-IDGKALLRLNSERMMK-YMGLK-LGPAL 70
Query: 66 RIIYDIESFKKEIHN 80
+I + H+
Sbjct: 71 KICNLVNKVNGRDHH 85
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding
protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2
PDB: 1pk1_A
Length = 89
Score = 46.8 bits (111), Expect = 4e-07
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 8 VLDWTSEQVANWLTQ-KGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEI-LGDIK 65
+ W+ + V+N++ + G Y +DG+ L L E+ L + ++ + LG
Sbjct: 14 ISSWSVDDVSNFIRELPGCQDYVDDFIQ-QEIDGQALLRLKEKHLVN---AMGMKLGPAL 69
Query: 66 RIIYDIESFKKEIHNDIRD 84
+I+ +ES K+ +
Sbjct: 70 KIVAKVESIKEVRDHHHHH 88
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural
genomics, protein regulation, transcription; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 46.8 bits (111), Expect = 4e-07
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
V WT +VA WL D +L G+ L L + L++ +++ LG + I
Sbjct: 11 VETWTPGKVATWLRGLDDSLQDYPFED-WQLPGKNLLQLCPQSLEA--LAVRSLGHQELI 67
Query: 68 IYDIESFKKEIHN 80
+ +E +
Sbjct: 68 LGGVEQLQALSSR 80
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, alternative splicing, ANK repeat, cell
junction, cell membrane; NMR {Homo sapiens}
Length = 103
Score = 40.7 bits (95), Expect = 7e-05
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 10 DWTSEQVANWLTQKGHGKYAPLLCDQ--HRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
+ V WL G +Y L + G ++ ++DL I I G +RI
Sbjct: 19 RCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLE--IGILNSGHRQRI 76
Query: 68 IYDIESFKKEIHNDIRDRGYDPRSL 92
+ I+ K I GY P S+
Sbjct: 77 LQAIQLLPKMRP--IGHDGYHPTSV 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 8e-05
Identities = 53/427 (12%), Positives = 130/427 (30%), Gaps = 136/427 (31%)
Query: 15 QVANWLT---QKGHGK--YAPLLCDQHRLDGR---GLFLLHEEDLKSPPISIEILGDI-- 64
+ A + G GK A +C +++ + +F L+ ++ SP +E+L +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 65 -------------KRIIYDIESFKKEIHNDIRDRGYDPRSLV------------------ 93
I I S + E+ ++ + Y L+
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSC 266
Query: 94 KI---TRSHSAMVESTSSYVSREVVVIPRG----------------NFKVQDNILKPE-- 132
KI TR + + S+ + + + + + QD L E
Sbjct: 267 KILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPREVL 323
Query: 133 -----LVKMVVAAVYLFVVSW--------------ILAFVMVIVHDRVPDMKK-YPPLPD 172
+ ++ ++ + +W I + + V+ + +K + L
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA---EYRKMFDRLS- 379
Query: 173 IFLDNIPLVP-------WAFKLSEICGTLLMFIWISVCIFHKHRTILLRRFFALLGTAYL 225
+F + +P W + M + V HK +++ ++
Sbjct: 380 VFPPSAH-IPTILLSLIWFDVIKSDV----MVV---VNKLHK-YSLVEKQPKES------ 424
Query: 226 LRSVTVVITSLSVPGEHIECSPRTYSDQSIRQKLEEAFIIWKGAGLSIQGINTCGDYLFS 285
++S+P ++E + ++ ++ + + + + I K Y +S
Sbjct: 425 ---------TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 286 --GHTTAVTFLNFFITEYTPNTQIFYVLHL-LAWVVNILAIGCILASHEHYSIDVFIAF- 341
GH + E+ +F ++ L ++ + + ++
Sbjct: 476 HIGH-------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 342 ----YIT 344
YI
Sbjct: 529 FYKPYIC 535
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 99
Score = 40.2 bits (94), Expect = 1e-04
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 10 DWTSEQ-VANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRII 68
D+T+ V +WL+ +Y + + + EDL I I + G K+I+
Sbjct: 18 DFTAFTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLR--IGITLAGHQKKIL 75
Query: 69 YDIESFKKEIHNDIRDRGYDPRS 91
I S + +I P S
Sbjct: 76 NSIHSMRVQISQSPTAMASGPSS 98
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing
protein 3; SAM domain, helix bundle, cell membrane,
cell projection, cytoplasm; NMR {Homo sapiens}
Length = 100
Score = 39.9 bits (93), Expect = 1e-04
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 9 LDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRII 68
+A WL +YA L E+LK + I G KRI+
Sbjct: 22 AAPQDLDIAVWLATVHLEQYADTFRRHGLATAGAARGLGHEELKQ--LGISATGHRKRIL 79
Query: 69 YDIESFKKE 77
+++ +E
Sbjct: 80 RLLQTGTEE 88
>3k1r_B Usher syndrome type-1G protein; protein-protein complex,
alternative splicing, coiled coil, deafness, hearing,
non-syndromic deafness, polymorphism; 2.30A {Homo
sapiens}
Length = 74
Score = 38.9 bits (91), Expect = 1e-04
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 16 VANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYDIESFK 75
+ +L +A LL Q ++D L L + DL+S IS+ LG ++I+ + +
Sbjct: 5 LETFLASLHMEDFAALL-RQEKIDLEALMLCSDLDLRS--ISVP-LGPREKILGAVRRRR 60
Query: 76 KEIHN 80
+ +
Sbjct: 61 QAMER 65
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling
protein; NMR {Homo sapiens}
Length = 101
Score = 39.5 bits (92), Expect = 2e-04
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 10 DWTSEQVANWLTQKGHGKYAPLLCDQ--HRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
+ V WL G +Y L + G ++ E+DL+ I I +++
Sbjct: 26 RTLEQSVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRD--IGISDPQHRRKL 83
Query: 68 IYDIESFKKEIHNDIRDRGYD 88
+ S ++ GYD
Sbjct: 84 LQAARSLP-----KVKALGYD 99
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix
bundle, signaling protein, actin-binding, alternative
splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Length = 86
Score = 39.0 bits (91), Expect = 2e-04
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 10 DWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIY 69
++ WL G +Y L D L + EEDL+ ++ + ++
Sbjct: 23 GLGEAGMSAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEE--AGVQDPAHKRLLLD 80
Query: 70 DIESFK 75
++ K
Sbjct: 81 TLQLSK 86
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental
regulation, tyrosine kinase, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
SCOP: a.60.1.2
Length = 81
Score = 37.8 bits (88), Expect = 4e-04
Identities = 11/70 (15%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYD 70
+ V +WL G+Y + ++ +D+++ + I ++G K+I+
Sbjct: 5 SSGLTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRA--LGITLMGHQKKILGS 62
Query: 71 IESFKKEIHN 80
I++ + ++ +
Sbjct: 63 IQTMRAQLTS 72
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics,
structural genomics consortium, SGC, alternative
splicing, ATP-binding; 2.10A {Homo sapiens}
Length = 90
Score = 38.3 bits (89), Expect = 4e-04
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 10 DWTSEQ-VANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRII 68
D+T+ V WL +Y + + ED+ S + I ++G K+I+
Sbjct: 21 DFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMS--LGITLVGHQKKIM 78
Query: 69 YDIESFKKEIHN 80
I++ + ++ +
Sbjct: 79 SSIQTMRAQMLH 90
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer;
1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Length = 82
Score = 37.8 bits (88), Expect = 4e-04
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYD 70
+ V WL G+Y + + + ED+ + + + G K+I+
Sbjct: 9 TSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILR--VGVTLAGHQKKILNS 66
Query: 71 IESFKKEIH 79
I+ + +++
Sbjct: 67 IQVMRAQMN 75
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase,
membrane, nucleotide- binding, phosphorylation, repeat,
signal, transferase; 2.10A {Homo sapiens}
Length = 83
Score = 36.7 bits (85), Expect = 0.001
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYD 70
V WL G+Y + + EDL I + + G K+I+
Sbjct: 13 SAFGSVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLR--IGVTLAGHQKKILAS 70
Query: 71 IESFKKEIHN 80
++ K +
Sbjct: 71 VQHMKSQAKP 80
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM
domain, pointed domain, SCM domain, STE50 regulator,
transferase; NMR {Saccharomyces cerevisiae} SCOP:
a.60.1.2 PDB: 1x9x_A
Length = 85
Score = 36.1 bits (83), Expect = 0.002
Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 10 DWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIY 69
V +L + G +Y + + + L ++ L + + + +GD +I+
Sbjct: 12 TNDLPFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIA--LGVNKIGDRLKILR 69
Query: 70 DIESFKKE 77
+SF+++
Sbjct: 70 KSKSFQRD 77
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 36.0 bits (83), Expect = 0.002
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 10 DWTSEQ-VANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRII 68
+ + V+ WL +Y + + +D+K I + + G KRI
Sbjct: 8 EGVPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVKR--IGVRLPGHQKRIA 65
Query: 69 YDIESFKKEIHN 80
Y + K +++
Sbjct: 66 YSLLGLKDQVNT 77
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 80
Score = 35.2 bits (81), Expect = 0.004
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQ--HRLDGRGLFLLHEEDLKSPPISIEILGDIKRII 68
+ V WL G +Y L + G ++ ++DL I I G +RI+
Sbjct: 10 CPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLE--IGILNSGHRQRIL 67
Query: 69 YDIESFK 75
I+
Sbjct: 68 QAIQLLP 74
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell
signaling, angiogenesis, apopt ATP-binding, cataract;
NMR {Homo sapiens}
Length = 82
Score = 35.2 bits (81), Expect = 0.005
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 4 AENFVLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGD 63
+ V + V+ WL +Y + + +D+K I + + G
Sbjct: 7 SSGLVPRGSHMTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKR--IGVRLPGH 64
Query: 64 IKRIIYDIESFKKEIHN 80
KRI Y + K +++
Sbjct: 65 QKRIAYSLLGLKDQVNT 81
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal
transduction, SAM domain, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: a.60.1.2
Length = 91
Score = 35.3 bits (81), Expect = 0.005
Identities = 8/65 (12%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 16 VANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYDIESFK 75
+ ++L +Y + + +++ L+ I I G +RI+ ++
Sbjct: 18 IKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQK--IGISPTGHRRRILKQLQIIL 75
Query: 76 KEIHN 80
++ +
Sbjct: 76 SKMQD 80
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
EF-SAM, STIM1, store operated calcium entry regulator,
SOCE; NMR {Homo sapiens}
Length = 150
Score = 36.2 bits (83), Expect = 0.006
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 8 VLDWTSEQVANWLTQK-GHGKYAPLLCDQHRLDGRGLFLLHEEDLK 52
V +WT ++V WL +Y + +L G + L +
Sbjct: 78 VYNWTVDEVVQWLITYVELPQYEETF-RKLQLSGHAMPRLAVTNTT 122
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase,
nucleotide-binding, transferase, tyrosine-protein
kinase, signal, sterIle alpha motif; 2.40A {Homo
sapiens}
Length = 86
Score = 34.4 bits (79), Expect = 0.007
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYD 70
V+ WL +Y + + +D+K I + + G KRI Y
Sbjct: 19 VPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKR--IGVRLPGHQKRIAYS 76
Query: 71 IESFKKEIH 79
+ K +++
Sbjct: 77 LLGLKDQVN 85
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling
protein; 2.40A {Homo sapiens} PDB: 3sen_A
Length = 149
Score = 35.8 bits (82), Expect = 0.008
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYD 70
+A WL+ G +Y +L D + + + EDL+ I I LG K+++
Sbjct: 77 HKPANLAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQE--IGITKLGHQKKLMLA 134
Query: 71 IESFKK 76
+ +
Sbjct: 135 VRKLAE 140
Score = 32.0 bits (72), Expect = 0.19
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPIS 57
+SE V+ WLT YAP D + + EDL + ++
Sbjct: 8 KSSEAVSQWLTAFQLQLYAPNF-ISAGYDLPTISRMTPEDLTAIGVT 53
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase,
nucleotide-binding, transferase, tyrosine-protein
kinase, signal, sterIle alpha motif; 2.00A {Homo
sapiens} PDB: 3kka_A
Length = 82
Score = 34.0 bits (78), Expect = 0.010
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 2 ENAENFVLDWTSEQ-VANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEI 60
F D + V+ WL +Y + L EDL + I +
Sbjct: 11 RENLYFQGDGIPYRTVSEWLESIRMKRYILHFHSAGLDTMECVLELTAEDLTQ--MGITL 68
Query: 61 LGDIKRIIYDIES 73
G KRI+ I+
Sbjct: 69 PGHQKRILCSIQG 81
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction
module, dimerization domain, transferase; 2.00A {Mus
musculus} SCOP: a.60.1.2
Length = 94
Score = 34.1 bits (78), Expect = 0.011
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 16 VANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYDIESFK 75
V +WL +Y + + ++DL I I + +I+ +++ +
Sbjct: 29 VGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLAR--IGITAITHQNKILSSVQAMR 86
Query: 76 KEIH 79
++
Sbjct: 87 TQMQ 90
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 35.4 bits (81), Expect = 0.012
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 10 DWTSEQVANWLTQK-GHGKYAPLLCDQHRLDGRGLFLLHEED 50
+WT E WL + +Y + + G L + +
Sbjct: 80 NWTLEDTLQWLIEFVELPQYEK-NFRDNNVKGTTLPRIAVHE 120
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.025
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 31/122 (25%)
Query: 3 N-AENFVLDWTS-----EQVANWLTQKGHGKYAPLLCDQHR--LDGRGL-----FL---- 45
N A+N V+ + + L AP DQ R R L FL
Sbjct: 372 NGAKNLVV--SGPPQSLYGLNLTL----RKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 46 -LHEEDLKSPPISIEILGDIKR--IIYDIESFKKEIHNDIRDRGYDPRSLVK-ITRSHSA 101
H L P S I D+ + + ++ + + ++ D D G D R L I+
Sbjct: 426 PFHSHLLV--PASDLINKDLVKNNVSFNAKDIQIPVY-DTFD-GSDLRVLSGSISERIVD 481
Query: 102 MV 103
+
Sbjct: 482 CI 483
Score = 30.8 bits (69), Expect = 1.0
Identities = 54/343 (15%), Positives = 105/343 (30%), Gaps = 106/343 (30%)
Query: 34 DQHRLDGRGL----FLLHEED------LKSPPISIEILGDIKRIIYDIESFKKEIHNDIR 83
D ++ +GL +L + + L S PIS ++G + + + +
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG-----VIQLAHYV----VTAK 254
Query: 84 DRGYDPRSLVKITRS---H-----SAMVESTSSYVSREVVVIPRGNFKVQDNILKPELVK 135
G+ P L + H +A+ + + S E +F ++ K
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETD--SWE-------SF--FVSVRK----- 298
Query: 136 MVVAAVYLFVVSWI-LAFVMVIVHDRVPDMKKYPPLPDIFLDNIPLVPWAFKLSEICGTL 194
A LF +I + ++ P+ P + + L+N VP + LS I
Sbjct: 299 ---AITVLF---FIGVR-----CYEAYPNTSLPPSILEDSLENNEGVP-SPMLS-ISNLT 345
Query: 195 LMFI--WISVCIFH----KHRTILL---RRFF-------ALLGTAYLLRSVT-------- 230
+ +++ H K I L + +L G LR
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 231 --------VVITS----LSVPGEHIECSPRTY---SDQSIRQKLEEAFIIWKGAGLSIQG 275
+ ++ ++ P H S + I + L + + + + I
Sbjct: 406 RIPFSERKLKFSNRFLPVASP-FH---SH--LLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 276 INTC-GDYLFSGHTTAVTFLNFFITEYT---PNTQIFYVLHLL 314
+T G L + + I T F H+L
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR
{Saccharomyces cerevisiae}
Length = 119
Score = 33.5 bits (76), Expect = 0.039
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 16 VANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYDIESFK 75
+ WL KY+ L L L +E L+ + LG ++++
Sbjct: 52 IPMWLKSLRLHKYSDALSG---TPWIELIYLDDETLEK--KGVLALGARRKLLKAFGIVI 106
Query: 76 KEIHNDIRDRG 86
D+ DR
Sbjct: 107 DYKERDLIDRS 117
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA
binding protein; 1.60A {Saccharomyces cerevisiae} PDB:
2f8k_A 2fe9_A
Length = 88
Score = 32.6 bits (74), Expect = 0.044
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 16 VANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYDIESFK 75
+ WL KY+ L ++ L L +E L+ + LG ++++
Sbjct: 21 IPMWLKSLRLHKYSDALSGTPWIE---LIYLDDETLEK--KGVLALGARRKLLKAFGIVI 75
Query: 76 KEIHNDIRDR 85
D+ DR
Sbjct: 76 DYKERDLIDR 85
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo
sapiens} PDB: 3tad_A
Length = 334
Score = 34.5 bits (78), Expect = 0.060
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 10 DWTSEQVANWLTQK-GHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRII 68
W V WL G + C + G + L + +++ I I ++
Sbjct: 38 QWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQR-EIGISNPLHRLKLR 96
Query: 69 YDIESFKKEI 78
I+
Sbjct: 97 LAIQEMVSLT 106
Score = 32.6 bits (73), Expect = 0.22
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 10 DWTSEQVAN-WLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRII 68
D E + N WL G +Y + +D R L L ++DL+ + + +
Sbjct: 159 DMNHEWIGNEWLPSLGLPQYRSY-FMECLVDARMLDHLTKKDLR-VHLKMVDSFHRTSLQ 216
Query: 69 YDIESFKKEIHNDIRDRGYDPRSLVKIT 96
Y I ++ YD + L +
Sbjct: 217 YGIM--------CLKRLNYDRKELERRR 236
Score = 31.8 bits (71), Expect = 0.44
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEI 60
VL W++++V W+ G +YA + + + G + L D S + ++I
Sbjct: 246 VLVWSNDRVIRWIQAIGLREYANNILE-SGVHGSLIALDENFDYSSLALLLQI 297
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein
regulation, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
Length = 99
Score = 32.3 bits (73), Expect = 0.069
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 12 TSEQVANWLTQKGHGKYAPLLCDQ-HRLDGRGLFLLHEEDLKS 53
++V WL K ++P + + L G LF L++E+LK
Sbjct: 25 GPDEVRAWLEAKA---FSPRIVENLGILTGPQLFSLNKEELKK 64
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR
{Saccharomyces cerevisiae} PDB: 2ese_A
Length = 101
Score = 31.9 bits (72), Expect = 0.095
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 14 EQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYDIES 73
+ + WL KY+ L ++ L L +E L+ + LG ++++
Sbjct: 32 KNIPMWLKSLRLHKYSDALSGTPWIE---LIYLDDETLEK--KGVLALGARRKLLKAFGI 86
Query: 74 FKKEIHNDIRDRG 86
D+ DR
Sbjct: 87 VIDYKERDLIDRS 99
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein
interaction domain, growth arrest, signaling protein;
NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB:
1z1v_A
Length = 85
Score = 30.8 bits (69), Expect = 0.19
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 1 MENAENFVLDWTSEQVANWLTQKGHGKYAPLLCD---QHRLDGRGLFLLHEEDLK 52
M N + W+ + V W + LC ++ + G L L +D +
Sbjct: 4 MNNED--FSQWSVDDVITWCISTLEVEETDPLCQRLRENDIVGDLLPELCLQDCQ 56
>1x66_A Friend leukemia integration 1 transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 30.7 bits (69), Expect = 0.25
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 10 DWTSEQVANWL--TQKGHGKYAPLLCDQHRLDGRGLFLLHEEDL--KSPPISIEIL 61
WT E V WL K + +DG+ L +++ED + + E+L
Sbjct: 26 LWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNTEVL 81
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis,
protein regulation, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 84
Score = 29.9 bits (67), Expect = 0.29
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 10 DWTSEQVANWLTQKGHG-KYAPLLCDQHRLDGRGLFLLHEEDLKS 53
+ E+V+ L G ++DG L L EE L
Sbjct: 17 GLSIEEVSKSLRFIGLSEDVISFF-VTEKIDGNLLVQLTEEILSE 60
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein;
NMR {Homo sapiens} SCOP: a.60.1.1
Length = 97
Score = 30.3 bits (68), Expect = 0.30
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 10 DWTSEQVANWL--TQKGHGKYAPLLCDQHRLDGRGLFLLHEEDL--KSPPISIEIL 61
W+++ V WL K +G + +DG+ L + ++D +P + +IL
Sbjct: 29 LWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPSYNADIL 84
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 128
Score = 30.5 bits (68), Expect = 0.42
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 10 DWTSEQVANWL--TQKGHGKYAPLLCDQHRLDGRGLFLLHEEDL--KSPPISIEIL 61
WT E V WL K + +DG+ L +++ED + + E+L
Sbjct: 40 LWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNTEVL 95
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 29.5 bits (66), Expect = 0.51
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 10 DWTSEQVANWL--TQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKS-PPISIEIL 61
DW+ V WL T+ + Q L G+ L + EE + P+ ++L
Sbjct: 26 DWSPSNVQKWLLWTEHQYRLPPMGKAFQE-LAGKELCAMSEEQFRQRSPLGGDVL 79
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase
phosphorylation site, alpha-helical bundle,
transcription factor, DNA-binding, nucleus; NMR {Mus
musculus} PDB: 2kmd_A*
Length = 110
Score = 30.0 bits (67), Expect = 0.55
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 10 DWTSEQVANWLTQ-KGHGKYAPLLCDQHRLDGRGLFLLHEEDL--KSPPISIEIL 61
WT V +W+ + + + G L L +E +P +IL
Sbjct: 43 QWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPDFVGDIL 97
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 28.8 bits (64), Expect = 0.90
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 11 WTSEQVANWLT-QKGHGKYAPLLCDQHR--LDGRGLFLLHEEDL--KSPPISIEILGDI 64
W+ QV +W++ Q KY D R +DG L E+L P LGD
Sbjct: 27 WSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGP-----LGDQ 80
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, tandem, signaling protein, alternative
splicing, ANK repeat; NMR {Homo sapiens}
Length = 148
Score = 29.4 bits (65), Expect = 1.2
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQ--HRLDGRGLFLLHEEDLKSPPISIEILGDIKRII 68
+ + V WL G +Y L + G ++ ++DL I I G +RI+
Sbjct: 12 GSVQTVGQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLLE--IGILNSGHRQRIL 69
Query: 69 YDIESFKKEIHNDIRDRGYDPR 90
I+ K
Sbjct: 70 QAIQLLPKMRPIGHDGAHPTSV 91
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha
motif, hydro regulator; 2.40A {Escherichia coli}
Length = 93
Score = 28.0 bits (62), Expect = 1.6
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 10 DWTSEQVANWLTQ-KGHGKYAPLLCDQHRLDGRGLFLLHEEDLKS-PPISIEIL 61
W+ + VA WL + +P+ + ++G+ L LL +ED + P S ++L
Sbjct: 14 YWSRDDVAQWLKWAENEFSLSPIDSNTFEMNGKALLLLTKEDFRYRSPHSGDVL 67
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10)
helix, transcription; 2.07A {Drosophila melanogaster}
SCOP: a.60.1.1
Length = 82
Score = 27.5 bits (61), Expect = 2.1
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 10 DWTSEQVANWLTQKGHGKYAPLLC---DQHRLDGRGLFLLHEED 50
DWT V WL + + + ++G+ L L+ +
Sbjct: 13 DWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDM 56
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix,
transcription; 2.07A {Drosophila melanogaster} SCOP:
a.60.1.1 PDB: 1sv4_A
Length = 85
Score = 27.6 bits (61), Expect = 2.2
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 10 DWTSEQVANWLTQ-KGHGKYAPLLCDQHRLDGRGLFLLHEEDLKS 53
W+ E V +L L D +++G+ L LL D
Sbjct: 12 LWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGH 56
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A
{Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A
1lky_B 2qb1_A
Length = 89
Score = 27.2 bits (60), Expect = 2.9
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 10 DWTSEQVANWLTQ-KGHGKYAPLLCDQHRLDGRGLFLLHEEDLKS-PPISIEIL 61
W+ + VA WL + P+ + ++G+ L LL +ED + P S + L
Sbjct: 14 YWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPHSGDEL 67
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription,
signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Length = 91
Score = 26.8 bits (59), Expect = 4.5
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 10 DWTSEQVANWLTQKGHGKYA--PLLCDQHRLDGRGLFLLHEEDL--KSPPISI--EILGD 63
W+++QV +W+ +++ + + GR L L++ED + P I L
Sbjct: 25 HWSTDQVLHWVVWVMK-EFSMTDIDLTTLNISGRELCSLNQEDFFQRVPRGEILWSHLEL 83
Query: 64 IKR 66
+++
Sbjct: 84 LRK 86
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 27.7 bits (62), Expect = 7.5
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 134 VKMVVAAVYLFVVSWILAFVMVIVHDRVPDMKKYPPLPDIFL 175
VKM++ V F + W+ + ++ PD+ + ++L
Sbjct: 247 VKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYL 288
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.438
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,638,035
Number of extensions: 406553
Number of successful extensions: 939
Number of sequences better than 10.0: 1
Number of HSP's gapped: 918
Number of HSP's successfully gapped: 76
Length of query: 418
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 322
Effective length of database: 4,021,377
Effective search space: 1294883394
Effective search space used: 1294883394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.0 bits)