RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy135
(418 letters)
>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 60.8 bits (147), Expect = 1e-12
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
V+ W+ ++VA+WL + +Y L G+ L L +ED K PP+ + +R+
Sbjct: 11 VVYWSPKKVADWLLENAMPEYCEPL---EHFTGQDLINLTQEDFKKPPLYRVSSDNGQRL 67
Query: 68 IYDIESFKKEIH 79
+ IE+ K E H
Sbjct: 68 LDMIETLKMEHH 79
>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster
[TaxId: 7227]}
Length = 70
Score = 47.1 bits (112), Expect = 6e-08
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 8 VLDWTSEQVANWLTQ-KGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKR 66
+ W+ + V+N++ + G Y Q +DG+ L L E+ L + LG +
Sbjct: 5 ISSWSVDDVSNFIRELPGCQDYVDDFI-QQEIDGQALLRLKEKHLVN--AMGMKLGPALK 61
Query: 67 IIYDIESFK 75
I+ +ES K
Sbjct: 62 IVAKVESIK 70
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains
3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Length = 64
Score = 46.8 bits (111), Expect = 9e-08
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYD 70
W+ V +WL G++ D H ++G L L +ED + + +G + I
Sbjct: 4 WSKFDVGDWLESIHLGEHRDRFED-HEIEGAHLPALTKEDFVE--LGVTRVGHRENIERA 60
Query: 71 IE 72
+
Sbjct: 61 LR 62
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 44.9 bits (106), Expect = 5e-07
Identities = 11/65 (16%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 16 VANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYDIESFK 75
V +WL G+Y + ++ +D+++ + I ++G K+I+ I++ +
Sbjct: 10 VGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRA--LGITLMGHQKKILGSIQTMR 67
Query: 76 KEIHN 80
++ +
Sbjct: 68 AQLTS 72
>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 63
Score = 42.2 bits (99), Expect = 3e-06
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 11 WTSEQVANWLTQ--KGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRII 68
WT E+V ++ + L +DG+ L L+ E + LG +I
Sbjct: 1 WTIEEVIQYIESNDNSLAVHGDLFRKHE-IDGKALLRLNSEMMMK--YMGLKLGPALKIC 57
Query: 69 YDIE 72
+
Sbjct: 58 NLVN 61
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 78
Score = 41.5 bits (97), Expect = 9e-06
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 11 WTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYD 70
+ + +L + +Y L L + E L ++I D R++
Sbjct: 10 ENHQTIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIE--LNIADPEDRARLLSA 67
Query: 71 IESFKK 76
ES
Sbjct: 68 AESLLS 73
>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 40.7 bits (95), Expect = 1e-05
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 14 EQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYDIES 73
V +WL +Y + + ++DL I I + +I+ +++
Sbjct: 5 VSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLAR--IGITAITHQNKILSSVQA 62
Query: 74 FKKEIHN 80
+ ++
Sbjct: 63 MRTQMQQ 69
>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor
of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 40.4 bits (94), Expect = 2e-05
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 8 VLDWTSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRI 67
V WT +VA WL + +L G+ L L + L++ +++ LG + I
Sbjct: 4 VETWTPGKVATWLRGLDDSLQDY-PFEDWQLPGKNLLQLCPQSLEA--LAVRSLGHQELI 60
Query: 68 IYDIESFKKEIHN 80
+ +E +
Sbjct: 61 LGGVEQLQALSSR 73
>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 74
Score = 40.0 bits (93), Expect = 3e-05
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 10 DWTS-EQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRII 68
D+TS V WL G+Y + + + ED+ + + + G K+I+
Sbjct: 2 DYTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILR--VGVTLAGHQKKIL 59
Query: 69 YDIESFKKEI 78
I+ + ++
Sbjct: 60 NSIQVMRAQM 69
>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 60
Score = 37.7 bits (87), Expect = 1e-04
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 16 VANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYDIESFK 75
V +L + G +Y + + + L ++ L + + + +GD +I+ +SF+
Sbjct: 3 VQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIA--LGVNKIGDRLKILRKSKSFQ 60
>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo
sapiens) [TaxId: 9606]}
Length = 78
Score = 37.6 bits (87), Expect = 2e-04
Identities = 8/69 (11%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 12 TSEQVANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIEILGDIKRIIYDI 71
+ + ++L +Y + + +++ L+ I I G +RI+ +
Sbjct: 7 VNVDIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQK--IGISPTGHRRRILKQL 64
Query: 72 ESFKKEIHN 80
+ ++ +
Sbjct: 65 QIILSKMQD 73
>d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia
blattae [TaxId: 563]}
Length = 224
Score = 31.6 bits (71), Expect = 0.14
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 285 SGHTTAVTFLNFFITEYTPNTQIFYVLHLLAWVVNILAIGCILASHEHYSIDVFIAFYIT 344
SGHT+ + E P Q + + + G H+ DV A +
Sbjct: 142 SGHTSIGWATALVLAEINPQRQNEILKRGYELGQSRVICGY------HWQSDVDAARVVG 195
Query: 345 SRLFLYYHSLANNQALYQK 363
S + H+ Q QK
Sbjct: 196 SAVVATLHTNPAFQQQLQK 214
>d2jv3a_ a.60.1.1 (A:) Ets-1 transcription factor pointed domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 29.0 bits (65), Expect = 0.33
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 21/64 (32%)
Query: 10 DWTSEQVANWLTQKGHGKYAPLLCDQHRL----------DGRGLFLLHEEDL--KSPPIS 57
WT V +W+ ++ L G L L +E +P
Sbjct: 43 QWTETHVRDWVMW---------AVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPDFV 93
Query: 58 IEIL 61
+IL
Sbjct: 94 GDIL 97
>d1sv0a_ a.60.1.1 (A:) Ets DNA-binding protein pokkuri (Yan)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 77
Score = 28.2 bits (63), Expect = 0.36
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 10 DWTSEQVANWLTQKGHGKYA--PLLCDQHRLDGRGLFLLHEEDLKS 53
W+ E V +L ++ L D +++G+ L LL D
Sbjct: 11 LWSREDVLVFLRF-CVREFDLPKLDFDLFQMNGKRLCLLTRADFGH 55
>d1sv0c_ a.60.1.1 (C:) Modulator of the activity of Ets (MAE,
CG15085-PA) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 82
Score = 27.9 bits (62), Expect = 0.54
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 10 DWTSEQVANWLTQK-GHGKYA--PLLCDQHRLDGRGLFLLHEEDLKS 53
DWT V WL L + ++G+ L L+ +
Sbjct: 13 DWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLC 59
>d1ji7a_ a.60.1.1 (A:) Etv6 transcription factor pointed domain
(Tel SAM) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 27.4 bits (61), Expect = 0.70
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 10 DWTSEQVANWLTQKGHGKYA--PLLCDQHRLDGRGLFLLHEEDLKS 53
W+ + VA WL + +++ P+ + ++G+ L LL +ED +
Sbjct: 14 YWSRDDVAQWL-KWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRY 58
>d1sxea_ a.60.1.1 (A:) Transcriptional regulator ERG {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 27.9 bits (62), Expect = 0.83
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 10 DWTSEQVANWL--TQKGHGKYAPLLCDQHRLDGRGLFLLHEEDL--KSPPISIEIL 61
W+++ V WL K +G + +DG+ L + ++D +P + +IL
Sbjct: 29 LWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPSYNADIL 84
>d1sxda_ a.60.1.1 (A:) GABP-alpha subunit {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 91
Score = 26.7 bits (59), Expect = 1.7
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 10 DWTSEQVANWLTQKGHGKYA--PLLCDQHRLDGRGLFLLHEEDLK 52
W+++QV +W+ +++ + + GR L L++ED
Sbjct: 25 HWSTDQVLHWVVWVMK-EFSMTDIDLTTLNISGRELCSLNQEDFF 68
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 25.2 bits (55), Expect = 3.3
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 16 VANWLTQKGHGKYAPLLCDQHRLDGRGLFLLHEEDLKSPPISIE 59
+ ++LT G Q L L EDL + I +
Sbjct: 2 LVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQ 45
>g1dy9.1 b.47.1.3 (A:,C:) NS3 protease {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 187
Score = 26.5 bits (59), Expect = 4.2
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 374 LFGYLESSMTRRVPNEYHTLGEIFV 398
L G + +S+T R N+ GE+ V
Sbjct: 13 LLGCIITSLTGRDKNQVD--GEVQV 35
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 26.1 bits (57), Expect = 7.5
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 78 IHNDIRDRGYDPRSLVK-ITRSHSAMVESTSSYVSREVVVIPRGN 121
IH D RGY ++ I R A V S+ + R
Sbjct: 165 IHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQRVP 209
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Length = 967
Score = 26.5 bits (58), Expect = 8.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 366 HRVRIWFPLFGYLESSMTRRVPNEYHTLGEIFVYVM 401
HRVR+ + + + M VP E +GE+ V +
Sbjct: 72 HRVRVIYSMLNDYCAKMISEVPYESSFVGELPVKSV 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.142 0.438
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,628,491
Number of extensions: 79104
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 26
Length of query: 418
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 330
Effective length of database: 1,199,356
Effective search space: 395787480
Effective search space used: 395787480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.6 bits)