RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13500
(396 letters)
>gnl|CDD|234193 TIGR03388, ascorbase, L-ascorbate oxidase, plant type. Members of
this protein family are the copper-containing enzyme
L-ascorbate oxidase (EC 1.10.3.3), also called
ascorbase. This family is found in flowering plants, and
shows greater sequence similarity to a family of
laccases (EC 1.10.3.2) from plants than to other known
ascorbate oxidases.
Length = 541
Score = 125 bits (315), Expect = 1e-31
Identities = 55/150 (36%), Positives = 80/150 (53%), Gaps = 21/150 (14%)
Query: 61 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAGT 120
GDTIVV+L NK+ IHWHG+ Q TP DG VTQC I G F Y F+ D GT
Sbjct: 39 GDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGT 98
Query: 121 YFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDE---- 176
YF+H H G Q+ G+ G+LI+ + +Y+ + +L++DW+H + ++
Sbjct: 99 YFYHGHYGMQRSAGLYGSLIVD-VPDGEKEPFHYDGE---FNLLLSDWWHKSIHEQEVGL 154
Query: 177 -----RWPGLRLHDVGQLPDTFLINGKGSY 201
RW +G+ P + LING+G +
Sbjct: 155 SSKPMRW-------IGE-PQSLLINGRGQF 176
>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase.
Length = 566
Score = 124 bits (314), Expect = 3e-31
Identities = 61/145 (42%), Positives = 86/145 (59%), Gaps = 9/145 (6%)
Query: 60 KGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAG 119
+GDT++V+L N + + IHWHG+ Q TP DG VTQCPIL G F Y+F+ D G
Sbjct: 61 QGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPG 120
Query: 120 TYFWHSHDGFQKMDGIIGNLIIRQPRT-SDPNSRYYEYDNPSHVVLVTDWYHNTTSDERW 178
TY +H+H G Q+ G+ G++ + PR S+P S Y+YD +++TDWYH +T E+
Sbjct: 121 TYLYHAHYGMQREAGLYGSIRVSLPRGKSEPFS--YDYD---RSIILTDWYHKSTY-EQA 174
Query: 179 PGLRLHDVGQL--PDTFLINGKGSY 201
GL + P + LI GKG Y
Sbjct: 175 LGLSSIPFDWVGEPQSLLIQGKGRY 199
>gnl|CDD|219542 pfam07732, Cu-oxidase_3, Multicopper oxidase. This entry contains
many divergent copper oxidase-like domains that are not
recognised by the pfam00394 model.
Length = 119
Score = 110 bits (278), Expect = 1e-29
Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLA-D 116
V +GDT+VV++ N + TTIHWHGL Q TP DGVP VTQCPI G F Y+F
Sbjct: 30 VREGDTVVVNVTNNLD-EPTTIHWHGLRQPGTPWADGVPGVTQCPIPPGESFTYRFTVKQ 88
Query: 117 AAGTYFWHSHDGFQKM-DGIIGNLIIRQP 144
AGTY++HSH + + G+ G +II P
Sbjct: 89 QAGTYWYHSHTSWLQQAAGLYGAIIIEDP 117
>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase.
Length = 574
Score = 104 bits (261), Expect = 2e-24
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 21/150 (14%)
Query: 61 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAGT 120
GDTIVV L NK+ IHWHG+ Q+ +P DG VTQC I G F YKF + GT
Sbjct: 61 GDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGT 120
Query: 121 YFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDE---- 176
+F+H H G Q+ G+ G+LI+ + RY N +L++DW+H + +
Sbjct: 121 HFYHGHYGMQRSAGLYGSLIVDVAKGPKERLRYDGEFN----LLLSDWWHESIPSQELGL 176
Query: 177 -----RWPGLRLHDVGQLPDTFLINGKGSY 201
RW G + LING+G +
Sbjct: 177 SSKPMRWIG--------EAQSILINGRGQF 198
>gnl|CDD|225043 COG2132, SufI, Putative multicopper oxidases [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 451
Score = 91.0 bits (226), Expect = 5e-20
Identities = 53/140 (37%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 60 KGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAG 119
KGDT+ +DL N++ T++HWHGL + MDGVP +TQ P G Y F D G
Sbjct: 70 KGDTVTLDLTNRLLV-DTSVHWHGL--PVPGEMDGVPPLTQIPPGPGETPTYTFTQDVPG 126
Query: 120 TYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDERWP 179
TY++H H Q DG+ G LII D NS D+ V+L DW +D
Sbjct: 127 TYWYHPHTHGQVYDGLAGALIIE-----DENSEPLGVDDE-PVILQDDWLDEDGTD---L 177
Query: 180 GLRLHDVGQLP-DTFLINGK 198
+G P DT L+NG
Sbjct: 178 YQEGPAMGGFPGDTLLVNGA 197
Score = 30.1 bits (68), Expect = 2.2
Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 6/72 (8%)
Query: 60 KGDTIVVDLHNKMPGRSTTIHWHG----LTQRLTPHMDGVPMVTQCPILEGNV-FRYKFL 114
G L N P H HG + P P ++ +F
Sbjct: 363 AGTRERWVLTNDTPM-PHPFHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAPGERLLVRFD 421
Query: 115 ADAAGTYFWHSH 126
AD G + +H H
Sbjct: 422 ADYPGPWMFHCH 433
>gnl|CDD|233432 TIGR01480, copper_res_A, copper-resistance protein, CopA family.
This model represents the CopA copper resistance protein
family. CopA is related to laccase (benzenediol:oxygen
oxidoreductase) and L-ascorbate oxidase, both
copper-containing enzymes. Most members have a typical
TAT (twin-arginine translocation) signal sequence with
an Arg-Arg pair. Twin-arginine translocation is observed
for a large number of periplasmic proteins that cross
the inner membrane with metal-containing cofactors
already bound. The combination of copper-binding sites
and TAT translocation motif suggests a mechansism of
resistance by packaging and export [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 587
Score = 87.2 bits (216), Expect = 1e-18
Identities = 47/109 (43%), Positives = 63/109 (57%), Gaps = 9/109 (8%)
Query: 60 KGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAG 119
+GDT+ + + N +P T+IHWHG+ L MDGVP V+ I G F Y+F +G
Sbjct: 82 EGDTVRLRVTNTLP-EDTSIHWHGIL--LPFQMDGVPGVSFAGIAPGETFTYRFPVRQSG 138
Query: 120 TYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDW 168
TY++HSH GFQ+ G+ G LII P DP D HVVL++DW
Sbjct: 139 TYWYHSHSGFQEQAGLYGPLII-DPAEPDP----VRADR-EHVVLLSDW 181
Score = 36.0 bits (83), Expect = 0.031
Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 9/112 (8%)
Query: 23 TIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCK-------GDTIVVDLHNKMPGR 75
++ + PGR +H G +R DG K G+ + V L N
Sbjct: 461 SLFPPPDGRAPGREIELHLTGNMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTM-M 519
Query: 76 STTIHWHGLTQRL-TPHMDGVPMVTQCPILEGNVFRYKFLADAAGTYFWHSH 126
+ IH HG+ L + + G ++ ADA G + +H H
Sbjct: 520 AHPIHLHGMWSELEDGQGEFQVRKHTVDVPPGGKRSFRVTADALGRWAYHCH 571
>gnl|CDD|132431 TIGR03390, ascorbOXfungal, L-ascorbate oxidase, fungal type. This
model describes a family of fungal ascorbate oxidases,
within a larger family of multicopper oxidases that also
includes plant ascorbate oxidases (TIGR03388), plant
laccases and laccase-like proteins (TIGR03389), and
related proteins. The member from Acremonium sp. HI-25
is characterized.
Length = 538
Score = 84.5 bits (209), Expect = 9e-18
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 26/150 (17%)
Query: 61 GDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADA--A 118
G T + ++N +P + T+HWHGLTQR P DG P+ +Q PI G+ F Y+ + A
Sbjct: 46 GQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDA 105
Query: 119 GTYFWHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNT------ 172
G+YF+HSH GFQ + G LI+ Y+YD+ ++LV+D++ T
Sbjct: 106 GSYFYHSHVGFQAVTA-FGPLIVEDCEPPP-----YKYDD-ERILLVSDFFSATDEEIEQ 158
Query: 173 ---TSDERWPGLRLHDVGQLPDTFLINGKG 199
++ W G + L+NGK
Sbjct: 159 GLLSTPFTWSG--------ETEAVLLNGKS 180
>gnl|CDD|234194 TIGR03389, laccase, laccase, plant. Members of this protein family
include the copper-containing enzyme laccase (EC
1.10.3.2), often several from a single plant species,
and additional, uncharacterized, closely related plant
proteins termed laccase-like multicopper oxidases. This
protein family shows considerable sequence similarity to
the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases
are enzymes of rather broad specificity, and
classification of all proteins scoring about the trusted
cutoff of this model as laccases may be appropriate.
Length = 539
Score = 65.9 bits (161), Expect = 1e-11
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 60 KGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF-LADAA 118
+GDT++V++ N + + TIHWHG+ Q DG +TQCPI G + Y F +
Sbjct: 40 EGDTVIVNVTNNV-QYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQR 98
Query: 119 GTYFWHSH 126
GT +WH+H
Sbjct: 99 GTLWWHAH 106
>gnl|CDD|177987 PLN02354, PLN02354, copper ion binding / oxidoreductase.
Length = 552
Score = 63.3 bits (154), Expect = 8e-11
Identities = 51/158 (32%), Positives = 69/158 (43%), Gaps = 25/158 (15%)
Query: 81 WHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF-LADAAGTYFWHSHDGFQKMDGIIGNL 139
W G+ QR DGVP T CPI G F Y F D G+YF++ G + G G L
Sbjct: 84 WSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGL 142
Query: 140 IIRQPRTSDPNSRYY---EYDNPS--HVVLVTDWYHNTTSDERWPGLRLHDVGQ---LPD 191
+ NSR Y +P + VL+ DWY + + + + D G+ PD
Sbjct: 143 RV--------NSRLLIPVPYADPEDDYTVLIGDWYTKSHTALK----KFLDSGRTLGRPD 190
Query: 192 TFLINGKGSYPVKGERYDFVIETSKAVSSYWIHIKGLG 229
LINGK KG+ D + T K +Y I +G
Sbjct: 191 GVLINGKSG---KGDGKDEPLFTMKPGKTYRYRICNVG 225
>gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase.
Length = 536
Score = 56.1 bits (135), Expect = 1e-08
Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Query: 62 DTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF-LADAAGT 120
D +V+++HN + + W+G+ R + DGV T CPI G + Y F + D G+
Sbjct: 55 DNLVINVHNDL-DEPFLLSWNGVHMRKNSYQDGV-YGTTCPIPPGKNYTYDFQVKDQVGS 112
Query: 121 YFWHSHDGFQKMDGIIGNL-IIRQPRTSDPNSRYYEYDNPS--HVVLVTDWYHNTTSDER 177
YF+ QK G G+L I PR P + P+ L+ DWY + +
Sbjct: 113 YFYFPSLAVQKAAGGYGSLRIYSLPRIPVP------FPEPAGDFTFLIGDWYRRNHTTLK 166
Query: 178 WPGLRLHDVGQLPDTFLINGKGSYPV------KGERYDFVIETSKAVSSYWIHIKG 227
+ +PD +ING+G V KG+ Y F I +S I G
Sbjct: 167 KILDGGRKLPLMPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILG 222
>gnl|CDD|215113 PLN02168, PLN02168, copper ion binding / pectinesterase.
Length = 545
Score = 54.6 bits (131), Expect = 5e-08
Identities = 45/147 (30%), Positives = 63/147 (42%), Gaps = 23/147 (15%)
Query: 62 DTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF-LADAAGT 120
D I V++ N + + W+GL R DGV T CPIL G + Y+F + D G+
Sbjct: 65 DVINVNIFNNLT-EPFLMTWNGLQLRKNSWQDGV-RGTNCPILPGTNWTYRFQVKDQIGS 122
Query: 121 YFWHSHDGFQKMDGIIGNLIIRQPRT-----SDPNSRYYEYDNPSHVVLVTDWYHNTTSD 175
YF+ QK G G + I P P+ EYD +L+ DW++ +
Sbjct: 123 YFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDE---EYD-----ILIGDWFYADHTV 174
Query: 176 ERWPGLRLHDVG---QLPDTFLINGKG 199
R D G PD L NG+G
Sbjct: 175 MR----ASLDNGHSLPNPDGILFNGRG 197
>gnl|CDD|178429 PLN02835, PLN02835, oxidoreductase.
Length = 539
Score = 51.5 bits (123), Expect = 4e-07
Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 22/180 (12%)
Query: 58 VCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF-LAD 116
V D I+++L NK+ + + W+G+ QR DGV + T CPI + + YKF D
Sbjct: 64 VVTNDNIILNLINKL-DQPFLLTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKFQTKD 121
Query: 117 AAGTYFWHSHDGFQKMDGIIGNL-IIRQPRTSDPNSRYYEYDNPS--HVVLVTDWY---H 170
GT+ + F K G G + + +PR P + P +LV DWY H
Sbjct: 122 QIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIP------FPLPDGDFTLLVGDWYKTSH 175
Query: 171 NTTSDERWPGLRLHDVGQLPDTFLINGKGSYPVKGER---YDFVIETSKAVSSYWIHIKG 227
T G L PD LING+ G++ Y F I +S I+G
Sbjct: 176 KTLQQRLDSGKVL----PFPDGVLINGQTQSTFSGDQGKTYMFRISNVGLSTSLNFRIQG 231
>gnl|CDD|215536 PLN02991, PLN02991, oxidoreductase.
Length = 543
Score = 51.2 bits (122), Expect = 5e-07
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 62 DTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF-LADAAGT 120
D +++++ N + I W G+ + DGV T CPI G + Y + D G+
Sbjct: 67 DNLIINVFNHL-DEPFLISWSGIRNWRNSYQDGV-YGTTCPIPPGKNYTYALQVKDQIGS 124
Query: 121 YFWHSHDGFQKMDGIIGNL-IIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDERWP 179
+++ GF K G G + I +P P + + VL+ DWY D R
Sbjct: 125 FYYFPSLGFHKAAGGFGAIRISSRPLIPVP----FPAPADDYTVLIGDWYKTNHKDLR-- 178
Query: 180 GLRLHDVGQLP--DTFLINGKGS 200
+L + G+LP D LING+GS
Sbjct: 179 -AQLDNGGKLPLPDGILINGRGS 200
>gnl|CDD|236810 PRK10965, PRK10965, multicopper oxidase; Provisional.
Length = 523
Score = 48.9 bits (117), Expect = 3e-06
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 16/98 (16%)
Query: 60 KGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKFLADAAG 119
+G + VD+ N++P TT+HWHGL + +DG P Q I G F D
Sbjct: 83 RGKAVTVDITNQLP-EETTLHWHGL--EVPGEVDGGP---QGIIAPGGKRTVTFTVDQPA 136
Query: 120 TYFW-----HSHDGFQKMDGIIGNLIIRQPRTSDPNSR 152
W H G Q G+ G ++I D S
Sbjct: 137 ATCWFHPHQHGKTGRQVAMGLAGLVLIE-----DDESL 169
Score = 38.1 bits (89), Expect = 0.007
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 20 KGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVP 56
+G + VD+ N++P TT+HWHGL + +DG P
Sbjct: 83 RGKAVTVDITNQLP-EETTLHWHGL--EVPGEVDGGP 116
>gnl|CDD|165622 PLN00044, PLN00044, multi-copper oxidase-related protein;
Provisional.
Length = 596
Score = 42.7 bits (100), Expect = 3e-04
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 12/142 (8%)
Query: 64 IVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVTQCPILEGNVFRYKF-LADAAGTYF 122
+VV++ N + + WHG+ QR + DGV T C I G + Y+F + D G++F
Sbjct: 70 LVVNVRNAL-DEPLLLTWHGVQQRKSAWQDGV-GGTNCAIPAGWNWTYQFQVKDQVGSFF 127
Query: 123 WHSHDGFQKMDGIIGNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDERWPGLR 182
+ + G G + I R P + D + + DWY R R
Sbjct: 128 YAPSTALHRAAGGYGAITINN-RDVIPIPFGFP-DGGDITLFIADWYARDHRALR----R 181
Query: 183 LHDVGQL---PDTFLINGKGSY 201
D G L PD LIN G Y
Sbjct: 182 ALDAGDLLGAPDGVLINAFGPY 203
>gnl|CDD|215896 pfam00394, Cu-oxidase, Multicopper oxidase. Many of the proteins
in this family contain multiple similar copies of this
plastocyanin-like domain.
Length = 146
Score = 34.2 bits (79), Expect = 0.047
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 10/59 (16%)
Query: 160 SHVVLVTDWYHNTTSDERWPGLRLHDVGQ----LPDTFLINGKG--SYPV----KGERY 208
+V+ ++DWYH D L +PD LINGK S G+ Y
Sbjct: 2 DYVITLSDWYHKDAKDLEKELLASGKAPTDFPPVPDAVLINGKDGASLATLTVTPGKTY 60
Score = 32.3 bits (74), Expect = 0.18
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 205 GERYDFVIETSKAVSSYWIHIKGLGPCEDNKPFQLGVLKYDGS 247
G+RY ++ ++ +YWI P + +L+Y G+
Sbjct: 105 GQRYSVLVTANQDPGNYWIVASPNIP-AFDNGTAAAILRYSGA 146
>gnl|CDD|225628 COG3086, RseC, Positive regulator of sigma E activity [Signal
transduction mechanisms].
Length = 150
Score = 30.0 bits (68), Expect = 1.0
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 15/71 (21%)
Query: 9 ACGNCTSKGVCKGDTIVVDLHNKMPGRSTTIHWHGLTQRLTPHMDGVPMVCKGDTIVVDL 68
ACG+C ++ C + +K+ ++ I + L P G + + +
Sbjct: 25 ACGSCAARAGCGSGLL-----SKLGPQTEHIFRVETDEPLEP----------GQKVELGI 69
Query: 69 HNKMPGRSTTI 79
K +S +
Sbjct: 70 EEKSLLKSALL 80
>gnl|CDD|218012 pfam04296, DUF448, Protein of unknown function (DUF448).
Length = 78
Score = 28.3 bits (64), Expect = 1.4
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 18 VCKGDTIVVDLHNKMPGRS 36
+V DL K+PGR
Sbjct: 21 RSPDGEVVPDLTGKLPGRG 39
Score = 28.3 bits (64), Expect = 1.4
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 58 VCKGDTIVVDLHNKMPGRS 76
+V DL K+PGR
Sbjct: 21 RSPDGEVVPDLTGKLPGRG 39
>gnl|CDD|119366 cd06549, GH18_trifunctional, GH18 domain of an uncharacterized
family of bacterial proteins, which share a common
three-domain architecture: an N-terminal glycosyl
hydrolase family 18 (GH18) domain, a glycosyl
transferase family 2 domain, and a C-terminal
polysaccharide deacetylase domain.
Length = 298
Score = 30.5 bits (69), Expect = 1.5
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 137 GNLIIRQPRTSDPNSRYYEYDNPSHVVLVTDWYHNTTSDERW 178
+ + S+ +Y+ + SH V W + +
Sbjct: 236 SAAVKFDDKASNATYFFYDDEGVSHEV----WMLDAVTLFNQ 273
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 29.9 bits (67), Expect = 2.6
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 253 PSSNPGYKGYPVNRIFNRPNADCNPDNTSNV----CISHLNNKDFVKPVLLAKKPDVFNR 308
P N G G P P D PD ++ + +N +F V P +
Sbjct: 331 PPPNEGKDGNPNEENLFPPGDDEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDI 390
Query: 309 PNADCNPDNTSN 320
P + N SN
Sbjct: 391 PEQEPNIPEDSN 402
>gnl|CDD|146712 pfam04219, DUF413, Protein of unknown function, DUF.
Length = 94
Score = 27.6 bits (62), Expect = 4.1
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 384 PRGFPRCGDF 393
PRGF R GDF
Sbjct: 9 PRGFSRSGDF 18
>gnl|CDD|236825 PRK11027, PRK11027, hypothetical protein; Provisional.
Length = 112
Score = 27.6 bits (62), Expect = 5.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 384 PRGFPRCGDF 393
PRGF R GDF
Sbjct: 18 PRGFSRSGDF 27
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 28.6 bits (64), Expect = 6.9
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 94 GVP-MVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMDGI 135
G P M+T LEG V F AD A +Y W + G GI
Sbjct: 89 GAPRMLTAGAQLEGPVDDLGFAADLAESYAWTTDLGVASPMGI 131
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 28.5 bits (64), Expect = 7.7
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 17/49 (34%)
Query: 89 TPHMDGVPMVTQCPILEGNVFRYKFLADAAGTYFWHSHDGFQKMD--GI 135
T MD VPMV ++ G V R A GT D FQ+ D GI
Sbjct: 106 TAQMDSVPMV----VITGQVPR-----PAIGT------DAFQETDIFGI 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.140 0.461
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,462,818
Number of extensions: 1942196
Number of successful extensions: 1365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1342
Number of HSP's successfully gapped: 43
Length of query: 396
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 297
Effective length of database: 6,546,556
Effective search space: 1944327132
Effective search space used: 1944327132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)